RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy992
         (106 letters)



>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
          {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 28.0 bits (62), Expect = 0.21
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 28 ENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEAL 61
          E++   W++L    Q   + ++  +++E      
Sbjct: 16 EHLLRFWNELEEAQQVELYAELQAMNFEELNFFF 49


>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 876

 Score = 24.7 bits (52), Expect = 3.5
 Identities = 3/34 (8%), Positives = 8/34 (23%)

Query: 12 ASTLEYFVDRKWNWSNENVQALWDQLSPEDQEMF 45
             ++  +  K        Q  W  +    +   
Sbjct: 58 GLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV 91


>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 402

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 9/62 (14%), Positives = 19/62 (30%)

Query: 24  NWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAARRK 83
           +  + +   L+     +       +     W  H+EA+   L  Y    D   L    + 
Sbjct: 283 SGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQV 342

Query: 84  WQ 85
            +
Sbjct: 343 AE 344


>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
           pestis [TaxId: 632]}
          Length = 353

 Score = 23.6 bits (49), Expect = 7.5
 Identities = 10/76 (13%), Positives = 28/76 (36%)

Query: 22  KWNWSNENVQALWDQLSPEDQEMFFFDMGQLDWEYHAEALCLGLRLYLVHDDLTSLPAAR 81
           +     +  + ++  LS     +++ +    +     +       L + ++ L  LPA  
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 303

Query: 82  RKWQKLYIAHCILRAV 97
            + ++L  +   L  V
Sbjct: 304 PRLERLIASFNHLAEV 319



 Score = 23.2 bits (48), Expect = 9.2
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 66  RLYLVHDDLTSLPAARRKWQKLYIAHCILR 95
           RL    + L  +P   +  ++L++ +  LR
Sbjct: 308 RLIASFNHLAEVPELPQNLKQLHVEYNPLR 337


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,534
Number of extensions: 18258
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 12
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)