BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9921
         (61 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
 pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
          Length = 555

 Score = 32.3 bits (72), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 12  SISNIDDTEYHCN------KTQIRKXXXXXXXXXXXXXXXQVANLLRLFKIPQASF 61
           S++ +D+ EY C       +  I                 QVANLLRLF+IPQ S+
Sbjct: 92  SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 147


>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
           Precursor In Presence Of Ly341495 Antagonist
          Length = 479

 Score = 32.3 bits (72), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 12  SISNIDDTEYHCN------KTQIRKXXXXXXXXXXXXXXXQVANLLRLFKIPQASF 61
           S++ +D+ EY C       +  I                 QVANLLRLF+IPQ S+
Sbjct: 91  SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 146


>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
           Group Iii Metabotropic Glutamate Receptor
          Length = 501

 Score = 28.9 bits (63), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/15 (73%), Positives = 14/15 (93%)

Query: 47  VANLLRLFKIPQASF 61
           VAN+LRLF+IPQ S+
Sbjct: 133 VANILRLFQIPQISY 147


>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
           Ly3414 Antagonist
          Length = 481

 Score = 28.5 bits (62), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/15 (73%), Positives = 14/15 (93%)

Query: 47  VANLLRLFKIPQASF 61
           VAN+LRLF+IPQ S+
Sbjct: 133 VANILRLFQIPQISY 147


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,170,747
Number of Sequences: 62578
Number of extensions: 18770
Number of successful extensions: 47
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)