Query psy9921
Match_columns 61
No_of_seqs 104 out of 1006
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:04:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1056|consensus 98.7 4.6E-08 9.9E-13 67.0 5.7 58 3-61 98-155 (878)
2 cd06365 PBP1_Pheromone_recepto 98.5 4.4E-07 9.5E-12 58.4 5.5 55 3-61 79-133 (469)
3 cd06361 PBP1_GPC6A_like Ligand 98.4 1.1E-06 2.3E-11 55.7 6.2 59 3-61 74-133 (403)
4 cd06375 PBP1_mGluR_groupII Lig 98.2 4.3E-06 9.3E-11 53.8 5.5 59 3-61 70-135 (458)
5 cd06376 PBP1_mGluR_groupIII Li 98.0 2.3E-05 5E-10 50.2 5.5 59 3-61 70-133 (463)
6 cd06374 PBP1_mGluR_groupI Liga 97.8 7.5E-05 1.6E-09 48.1 5.6 58 2-61 80-147 (472)
7 cd06364 PBP1_CaSR Ligand-bindi 97.7 0.00014 3E-09 47.5 5.5 58 3-61 89-148 (510)
8 cd06362 PBP1_mGluR Ligand bind 97.3 0.00072 1.6E-08 43.1 5.4 57 3-61 70-133 (452)
9 cd06350 PBP1_GPCR_family_C_lik 97.0 0.0039 8.4E-08 38.1 6.1 54 4-61 68-121 (348)
10 cd06363 PBP1_Taste_receptor Li 96.5 0.012 2.6E-07 37.3 5.5 56 4-61 82-137 (410)
11 cd06371 PBP1_sensory_GC_DEF_li 94.5 0.067 1.4E-06 33.7 3.7 32 30-61 65-96 (382)
12 cd06383 PBP1_iGluR_AMPA_Like N 94.4 0.075 1.6E-06 33.7 3.7 29 33-61 69-97 (368)
13 cd06393 PBP1_iGluR_Kainate_Glu 94.0 0.11 2.5E-06 32.6 4.0 32 30-61 71-102 (384)
14 cd06384 PBP1_NPR_B Ligand-bind 94.0 0.082 1.8E-06 33.4 3.2 30 32-61 74-103 (399)
15 cd06372 PBP1_GC_G_like Ligand- 93.8 0.095 2.1E-06 32.8 3.2 32 30-61 67-98 (391)
16 cd06386 PBP1_NPR_C_like Ligand 93.4 0.098 2.1E-06 33.0 2.8 31 31-61 67-97 (387)
17 PF01094 ANF_receptor: Recepto 93.3 0.087 1.9E-06 31.8 2.5 32 30-61 50-81 (348)
18 cd06385 PBP1_NPR_A Ligand-bind 93.3 0.11 2.4E-06 32.7 3.0 31 31-61 74-104 (405)
19 cd06269 PBP1_glutamate_recepto 92.8 0.29 6.2E-06 28.6 4.1 32 30-61 70-101 (298)
20 cd06367 PBP1_iGluR_NMDA N-term 92.2 0.13 2.9E-06 31.9 2.2 32 30-61 62-96 (362)
21 cd06373 PBP1_NPR_like Ligand b 92.0 0.24 5.1E-06 31.1 3.2 32 30-61 72-103 (396)
22 cd06382 PBP1_iGluR_Kainate N-t 91.8 0.31 6.7E-06 29.7 3.5 32 30-61 62-93 (327)
23 cd06352 PBP1_NPR_GC_like Ligan 90.7 0.4 8.8E-06 29.9 3.3 32 30-61 67-98 (389)
24 cd06368 PBP1_iGluR_non_NMDA_li 90.2 0.56 1.2E-05 28.4 3.6 32 30-61 61-92 (324)
25 cd06380 PBP1_iGluR_AMPA N-term 90.0 0.57 1.2E-05 29.2 3.6 32 30-61 61-92 (382)
26 cd06381 PBP1_iGluR_delta_like 88.7 0.79 1.7E-05 29.0 3.5 31 30-60 61-91 (363)
27 cd06388 PBP1_iGluR_AMPA_GluR4 87.6 0.67 1.4E-05 29.4 2.7 31 30-60 62-92 (371)
28 cd06351 PBP1_iGluR_N_LIVBP_lik 87.1 1.4 3.1E-05 26.4 3.8 32 30-61 62-93 (328)
29 cd06366 PBP1_GABAb_receptor Li 86.6 1.4 3E-05 27.1 3.6 32 30-61 65-96 (350)
30 cd06392 PBP1_iGluR_delta_1 N-t 84.8 1.8 3.8E-05 28.1 3.6 32 30-61 61-92 (400)
31 cd06389 PBP1_iGluR_AMPA_GluR2 82.6 1.6 3.4E-05 27.6 2.7 31 30-60 56-86 (370)
32 cd06394 PBP1_iGluR_Kainate_KA1 81.9 2.8 6.1E-05 26.4 3.6 32 30-61 64-96 (333)
33 cd06347 PBP1_ABC_ligand_bindin 80.1 3.5 7.7E-05 24.9 3.5 32 30-61 66-97 (334)
34 cd06390 PBP1_iGluR_AMPA_GluR1 79.8 2.3 5.1E-05 26.9 2.7 32 30-61 55-86 (364)
35 cd06349 PBP1_ABC_ligand_bindin 78.1 4.8 0.00011 24.6 3.7 32 30-61 66-97 (340)
36 cd06344 PBP1_ABC_ligand_bindin 77.5 5 0.00011 24.5 3.6 32 30-61 65-96 (332)
37 cd06345 PBP1_ABC_ligand_bindin 74.2 6.3 0.00014 24.2 3.5 32 30-61 66-97 (344)
38 cd06370 PBP1_Speract_GC_like L 73.1 5.9 0.00013 25.1 3.3 30 30-61 68-97 (404)
39 cd06342 PBP1_ABC_LIVBP_like Ty 73.1 6.8 0.00015 23.7 3.4 31 31-61 66-96 (334)
40 cd06346 PBP1_ABC_ligand_bindin 70.8 5.1 0.00011 24.3 2.5 32 30-61 66-98 (312)
41 cd06338 PBP1_ABC_ligand_bindin 70.8 6 0.00013 24.2 2.8 31 31-61 71-101 (345)
42 cd06340 PBP1_ABC_ligand_bindin 70.3 7.8 0.00017 23.9 3.3 32 30-61 69-100 (347)
43 cd06327 PBP1_SBP_like_1 Peripl 69.1 8.8 0.00019 23.4 3.3 32 30-61 65-96 (334)
44 cd06348 PBP1_ABC_ligand_bindin 65.3 12 0.00027 22.9 3.4 32 30-61 66-97 (344)
45 cd06391 PBP1_iGluR_delta_2 N-t 62.9 15 0.00033 23.7 3.6 31 30-60 61-91 (400)
46 cd06343 PBP1_ABC_ligand_bindin 61.4 15 0.00033 22.6 3.3 31 30-60 73-103 (362)
47 cd06330 PBP1_Arsenic_SBP_like 60.1 14 0.0003 22.6 3.0 31 31-61 67-97 (346)
48 cd06335 PBP1_ABC_ligand_bindin 58.2 22 0.00047 21.9 3.6 31 30-60 66-96 (347)
49 cd06387 PBP1_iGluR_AMPA_GluR3 57.5 14 0.00031 23.7 2.8 31 30-60 62-92 (372)
50 cd06379 PBP1_iGluR_NMDA_NR1 N- 57.0 19 0.00042 22.5 3.3 31 31-61 80-115 (377)
51 cd06328 PBP1_SBP_like_2 Peripl 54.9 22 0.00048 21.8 3.3 31 30-60 67-97 (333)
52 cd04509 PBP1_ABC_transporter_G 52.4 32 0.00069 19.9 3.5 31 31-61 67-97 (299)
53 cd06358 PBP1_NHase Type I peri 48.8 26 0.00055 21.4 2.8 30 30-60 66-95 (333)
54 cd06359 PBP1_Nba_like Type I p 48.0 32 0.00069 21.0 3.2 31 30-60 64-94 (333)
55 cd06331 PBP1_AmiC_like Type I 47.6 28 0.00061 21.2 2.9 30 31-60 67-96 (333)
56 PHA02105 hypothetical protein 46.6 13 0.00029 18.1 1.1 16 46-61 28-43 (68)
57 PRK15404 leucine ABC transport 45.6 35 0.00075 21.5 3.1 31 30-60 91-121 (369)
58 PF05233 PHB_acc: PHB accumula 43.7 22 0.00047 15.8 1.5 12 2-13 24-35 (41)
59 cd06329 PBP1_SBP_like_3 Peripl 39.7 41 0.00089 20.7 2.8 30 31-60 66-102 (342)
60 TIGR03863 PQQ_ABC_bind ABC tra 39.6 42 0.00091 21.2 2.8 30 31-60 59-88 (347)
61 cd06339 PBP1_YraM_LppC_lipopro 39.4 49 0.0011 20.4 3.1 30 31-60 59-88 (336)
62 COG0563 Adk Adenylate kinase a 39.1 53 0.0012 18.9 3.0 28 33-60 3-30 (178)
63 cd06333 PBP1_ABC-type_HAAT_lik 38.2 87 0.0019 18.8 4.0 31 30-60 65-95 (312)
64 PRK01184 hypothetical protein; 37.0 71 0.0015 17.9 3.3 28 32-60 3-30 (184)
65 cd06332 PBP1_aromatic_compound 34.7 67 0.0014 19.3 3.1 30 31-60 65-94 (333)
66 cd06268 PBP1_ABC_transporter_L 34.5 68 0.0015 18.5 3.0 30 31-60 66-95 (298)
67 COG0237 CoaE Dephospho-CoA kin 34.1 77 0.0017 18.8 3.2 29 30-59 2-30 (201)
68 cd06360 PBP1_alkylbenzenes_lik 33.9 62 0.0013 19.5 2.9 30 31-60 65-94 (336)
69 cd06356 PBP1_Amide_Urea_BP_lik 33.8 60 0.0013 19.9 2.8 31 30-60 66-96 (334)
70 cd06377 PBP1_iGluR_NMDA_NR3 N- 32.6 81 0.0018 20.7 3.3 31 30-60 80-111 (382)
71 cd06337 PBP1_ABC_ligand_bindin 31.4 63 0.0014 20.1 2.7 31 30-60 68-98 (357)
72 cd06326 PBP1_STKc_like Type I 29.9 99 0.0022 18.7 3.3 30 31-60 68-97 (336)
73 PRK14730 coaE dephospho-CoA ki 28.5 1.2E+02 0.0025 17.6 3.3 28 32-59 3-30 (195)
74 TIGR01360 aden_kin_iso1 adenyl 28.2 1.1E+02 0.0025 16.8 3.4 28 30-57 3-30 (188)
75 PLN02200 adenylate kinase fami 28.2 1.2E+02 0.0027 18.1 3.4 31 30-60 43-73 (234)
76 PLN02674 adenylate kinase 27.8 1.3E+02 0.0029 18.4 3.5 30 31-60 32-61 (244)
77 TIGR01359 UMP_CMP_kin_fam UMP- 27.7 1E+02 0.0023 17.0 3.0 27 33-59 2-28 (183)
78 COG1794 RacX Aspartate racemas 27.0 96 0.0021 19.1 2.8 20 31-50 2-21 (230)
79 TIGR01351 adk adenylate kinase 26.3 1.2E+02 0.0026 17.5 3.1 27 34-60 3-29 (210)
80 COG3172 NadR Predicted ATPase/ 26.0 87 0.0019 18.6 2.4 27 30-56 8-34 (187)
81 KOG3079|consensus 25.1 1.1E+02 0.0025 18.3 2.8 31 30-60 8-38 (195)
82 PF01121 CoaE: Dephospho-CoA k 24.9 97 0.0021 17.9 2.5 27 32-59 2-28 (180)
83 PTZ00088 adenylate kinase 1; P 24.8 1.3E+02 0.0028 18.1 3.1 28 33-60 9-36 (229)
84 PRK14530 adenylate kinase; Pro 24.6 1.4E+02 0.0031 17.2 3.2 28 32-59 5-32 (215)
85 TIGR03669 urea_ABC_arch urea A 24.4 1E+02 0.0022 19.6 2.8 30 30-59 67-96 (374)
86 PF00406 ADK: Adenylate kinase 24.2 66 0.0014 17.4 1.7 25 36-60 2-26 (151)
87 PF08971 GlgS: Glycogen synthe 24.0 73 0.0016 15.8 1.6 14 1-14 5-18 (66)
88 cd06336 PBP1_ABC_ligand_bindin 23.9 86 0.0019 19.3 2.3 29 31-60 71-99 (347)
89 cd06355 PBP1_FmdD_like Peripla 23.3 1.2E+02 0.0027 18.7 2.9 30 30-59 66-95 (348)
90 COG0683 LivK ABC-type branched 22.0 51 0.0011 20.8 1.1 31 30-60 77-107 (366)
91 PF13458 Peripla_BP_6: Peripla 20.8 96 0.0021 18.7 2.0 31 30-60 68-98 (343)
92 PF09498 DUF2388: Protein of u 20.3 1.1E+02 0.0024 15.4 1.8 13 2-14 43-55 (72)
93 PRK14527 adenylate kinase; Pro 20.0 1.9E+02 0.004 16.4 3.1 28 30-57 6-33 (191)
No 1
>KOG1056|consensus
Probab=98.69 E-value=4.6e-08 Score=66.99 Aligned_cols=58 Identities=40% Similarity=0.576 Sum_probs=48.2
Q ss_pred hHHHHHHHhhhcCCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
|+|+++|++.+-......+.|.... .+.+.++||+..++.++.+++++++|.+|||||
T Consensus 98 leqsl~Fv~~~~~~~~~e~~c~~g~-sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisy 155 (878)
T KOG1056|consen 98 LEQSLSFVRASLTSDDSEVRCPDGY-SPPVVAVIGPSYSSVSIAVANLLRLFLIPQISY 155 (878)
T ss_pred HHhhHHHHHhcccCCCcceecCCCC-CCceeEEeCCCCchHHHHHHHHHHhhcCceecc
Confidence 7899999996655555677786321 155999999999999999999999999999998
No 2
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=98.47 E-value=4.4e-07 Score=58.38 Aligned_cols=55 Identities=25% Similarity=0.429 Sum_probs=47.3
Q ss_pred hHHHHHHHhhhcCCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++++++|+.+.. +..+++.|... ..+++++|+..+..+..++.+++.+.+|||||
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~C~~~---~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~ 133 (469)
T cd06365 79 LESSLMWLSGEG-ETIPNYSCRRQ---RKSVAVIGGPSWALSATIATLLGLYKFPQLTY 133 (469)
T ss_pred HHHHHHHHhCCC-cccCCccCCCC---CceEEEEcCCccHHHHHHHHHhhhhcccceee
Confidence 578899997643 45688999866 57899999999999999999999999999987
No 3
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=98.42 E-value=1.1e-06 Score=55.75 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=46.4
Q ss_pred hHHHHHHHhh-hcCCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRS-ISNIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~-~~~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+.+|+.+ ......+||.|.....++.+.+++|+..|..+..++.+++.+.+|||||
T Consensus 74 ~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~S~~s~ava~v~~~~~IP~IS~ 133 (403)
T cd06361 74 MAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGYSEISMAVSRMLNLQLIPQVSY 133 (403)
T ss_pred HHHHHHHHhhcccccccccccccCCCCCCCeEEEECCCcchHHHHHHHHhccCCcceEec
Confidence 4567788864 2334568999974322256899999999999999999999999999987
No 4
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=98.21 E-value=4.3e-06 Score=53.77 Aligned_cols=59 Identities=42% Similarity=0.715 Sum_probs=45.5
Q ss_pred hHHHHHHHhhh-cCCcCCCcccCCCC------CCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSI-SNIDDTEYHCNKTQ------IRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~-~~~~~pny~C~~~~------~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++++++|+.+. .+...+++.|.... .++.+.+++|+..|..+..++.++..+.+|||||
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~~~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~ 135 (458)
T cd06375 70 LEQSLEFVRASLTKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISY 135 (458)
T ss_pred HHHHHHHHhhhhhcccccccccccCCccccccCCCCeEEEEcCCCchHHHHHHHHhhhccccceee
Confidence 57888999742 22345788886210 0156899999999999999999999999999986
No 5
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=97.98 E-value=2.3e-05 Score=50.22 Aligned_cols=59 Identities=34% Similarity=0.635 Sum_probs=45.3
Q ss_pred hHHHHHHHhhhcCCcCCCcccCCCC-----CCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNIDDTEYHCNKTQ-----IRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~~~pny~C~~~~-----~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
+++++++++....+..+++.|.... .+..+.+++|+..+..+..++.+++.+.+|+|+|
T Consensus 70 ~~~a~~~~~~l~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~ 133 (463)
T cd06376 70 LEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISY 133 (463)
T ss_pred HHHHHHHHhhhhhcccccCcCCCCCccccCCCCCeEEEECCCCchHHHHHHHHhccccCccccc
Confidence 4678888876433335788896310 1146889999999999999999999999999986
No 6
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=97.81 E-value=7.5e-05 Score=48.06 Aligned_cols=58 Identities=40% Similarity=0.553 Sum_probs=44.4
Q ss_pred hhHHHHHHHhhhc----------CCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 2 YFKWQGSYLRSIS----------NIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 2 ~~~~~~~~~~~~~----------~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
-++++++|+.... ....+++.|.... ..+.+++|+..+..+..++.+++.+.+|+|+|
T Consensus 80 a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~ 147 (472)
T cd06374 80 ALEQSIEFIRDSLISIRDEKDGVNPDGQSPGPNKSK--KPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAY 147 (472)
T ss_pred HHHHHHHHHhhcccccccccccccccCCCcccccCC--CCeEEEECCCcchHHHHHHHHhhhhccccccc
Confidence 3678999997420 0113566776432 56899999999999999999999999999986
No 7
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=97.68 E-value=0.00014 Score=47.55 Aligned_cols=58 Identities=38% Similarity=0.471 Sum_probs=42.9
Q ss_pred hHHHHHHHhhhcCCcCCCc--ccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNIDDTEY--HCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~~~pny--~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++++.+|+.... ...+|+ .|......+.+.+++|+.++..+..++.++..+.+|+|||
T Consensus 89 ~~~a~~li~~~~-~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~ 148 (510)
T cd06364 89 LEATLSFVAQNK-IDSLNLDEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSY 148 (510)
T ss_pred HHHHHHHHhccc-ccccccccccccCCCCCceEEEECCCchhHHHHHHHHhcccccccccc
Confidence 567788886533 233555 4652111156889999999999999999999999999986
No 8
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=97.35 E-value=0.00072 Score=43.09 Aligned_cols=57 Identities=44% Similarity=0.588 Sum_probs=40.8
Q ss_pred hHHHHHHHhhhcCC-------cCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNI-------DDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~-------~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+.+++...... ..+++.|.... ..+.+++|+..+..+..++.++..+.+|+|+|
T Consensus 70 ~~~a~~li~~~~~~~~~~~~~~~~~~~~~~~~--~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~ 133 (452)
T cd06362 70 LEQSLEFVRASLTKIDDCVYCDGGSPPPNNSP--KPVAGVIGASYSSVSIQVANLLRLFKIPQISY 133 (452)
T ss_pred HHHHHHHHhhhhhcCCccccccCCCcccccCC--CCeEEEECCCCCchHHHHHHHhccccCccccc
Confidence 34566777542111 14555443222 57899999999999999999999999999986
No 9
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=97.01 E-value=0.0039 Score=38.10 Aligned_cols=54 Identities=39% Similarity=0.544 Sum_probs=39.9
Q ss_pred HHHHHHHhhhcCCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 4 KWQGSYLRSISNIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 4 ~~~~~~~~~~~~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
+.+.+++....+ ..+++.|... ..+.+++|+.++..+..++.++..+.+|+|+|
T Consensus 68 ~~a~~li~~~~~-~~~~~~~~~~---~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~ 121 (348)
T cd06350 68 RAALDLLLSGEG-TTPPYSCRKQ---PKVVAVIGPGSSSVSMAVAELLGLFKIPQISY 121 (348)
T ss_pred HHHHHHHhcCCC-CCCCCcCCCC---CceEEEECCCccHHHHHHHHHHhcCcCceecc
Confidence 345556654332 2233677655 57899999999999999999999999999985
No 10
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=96.46 E-value=0.012 Score=37.27 Aligned_cols=56 Identities=32% Similarity=0.415 Sum_probs=39.8
Q ss_pred HHHHHHHhhhcCCcCCCcccCCCCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 4 KWQGSYLRSISNIDDTEYHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 4 ~~~~~~~~~~~~~~~pny~C~~~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
+.+.+++.... ..+++.|.....+..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 82 ~~~~~li~~~~--~~~~~~c~~~~~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~ 137 (410)
T cd06363 82 PPTLSLLSVNG--SRIEPQCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISY 137 (410)
T ss_pred HHHHHHHhccC--cccCcccccccCCCCeEEEECCCccHHHHHHHHHhcccccccccc
Confidence 34455554322 126788861111146899999999999999999999999999875
No 11
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=94.53 E-value=0.067 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=29.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+++|+||+
T Consensus 65 ~~V~aviGp~~S~~~~a~a~va~~~~iP~Is~ 96 (382)
T cd06371 65 GYASAFVGPVNPGYCEAAALLAKEWDKALFSW 96 (382)
T ss_pred CCceEEECCCCchHHHHHHHHHHhcCceEEec
Confidence 46889999999999999999999999999985
No 12
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=94.40 E-value=0.075 Score=33.67 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=26.8
Q ss_pred EEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 33 SGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 33 ~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+++|+.++..+..++.+.+.+.+|+|++
T Consensus 69 ~AIiGp~ss~~a~~V~si~~~~~IP~Is~ 97 (368)
T cd06383 69 HLVLDTTTCGDASEIKSVTGALGIPTFSA 97 (368)
T ss_pred EEEECCCcchhHHHHHHHHhccCCCEEEc
Confidence 69999999999999999999999999885
No 13
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=94.04 E-value=0.11 Score=32.61 Aligned_cols=32 Identities=9% Similarity=0.283 Sum_probs=29.2
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+.+.+++|+|++
T Consensus 71 ~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~ 102 (384)
T cd06393 71 LGVVAIFGPSQGSCTNAVQSICNALEVPHIQL 102 (384)
T ss_pred cCcEEEECCCChHHHHHHHHHHhccCCCeEec
Confidence 46889999999999999999999999999974
No 14
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=93.96 E-value=0.082 Score=33.37 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=27.4
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+++|+..+..+..++.+...+.+|+|+|
T Consensus 74 v~aviGp~~S~~~~av~~i~~~~~iP~Is~ 103 (399)
T cd06384 74 PDVFFGPGCVYPTASVARFATHWRLPLITA 103 (399)
T ss_pred CCEEECCCCchHHHHHHHHHhhcCCcEEee
Confidence 457999999999999999999999999986
No 15
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=93.75 E-value=0.095 Score=32.85 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=29.2
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+++|+|+|
T Consensus 67 ~~v~aiiGp~~S~~~~av~~va~~~~iP~is~ 98 (391)
T cd06372 67 EHISALFGPACPEAAEVTGLLASQWNIPMFGF 98 (391)
T ss_pred cCceEEECCCCCcHHHHHHHHHhccCccEEEe
Confidence 35789999999999999999999999999985
No 16
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=93.38 E-value=0.098 Score=33.02 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=28.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.+.+.+.+|+|++
T Consensus 67 ~v~aiiGp~~s~~~~~va~ia~~~~iP~Is~ 97 (387)
T cd06386 67 KPDLILGPVCEYAAAPVARLASHWNIPMISA 97 (387)
T ss_pred CCCEEECCCCccHHHHHHHHHHhCCCcEEcc
Confidence 5678999999999999999999999999985
No 17
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=93.32 E-value=0.087 Score=31.80 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=28.2
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
+.+.+++|+..+..+..++.+...+.+|+|+|
T Consensus 50 ~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~ 81 (348)
T PF01094_consen 50 QGVVAVIGPSCSSSAEAVASLASEWNIPQISP 81 (348)
T ss_dssp HTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred CCcEEEECCCcccccchhheeecccccceeec
Confidence 45889999999999999999999999999986
No 18
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=93.29 E-value=0.11 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=28.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.+...+++|+|||
T Consensus 74 ~v~aiiGp~~S~~~~~va~~a~~~~iP~Is~ 104 (405)
T cd06385 74 NPWAFIGPGCDYTASPVARFTTHWDVPLVTA 104 (405)
T ss_pred CCcEEECCCccchHHHHHHHHhccCCcEEcc
Confidence 4567999999999999999999999999986
No 19
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=92.76 E-value=0.29 Score=28.62 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=28.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 70 ~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 101 (298)
T cd06269 70 RGVVAVIGPSSSSSAEAVASLLGALHIPQISY 101 (298)
T ss_pred CceEEEECCCCchHHHHHHHHhccCCCcEEec
Confidence 46889999999999999999999999999975
No 20
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=92.18 E-value=0.13 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.4
Q ss_pred cceEEEeCCCChHH---HHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVT---SIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~---s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+.. +..++.+...+++|+|+|
T Consensus 62 ~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 62 QVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred cceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 45778889888887 888899999999999986
No 21
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=92.00 E-value=0.24 Score=31.15 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=28.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 72 ~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is~ 103 (396)
T cd06373 72 HKPDAFLGPGCEYAAAPVARFAAHWNVPVLTA 103 (396)
T ss_pred cCCeEEECCCccchhHHHHHHHhcCCCceECc
Confidence 35789999999999999999999999999975
No 22
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=91.82 E-value=0.31 Score=29.72 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.7
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++..+..++.+...+.+|+|++
T Consensus 62 ~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~ 93 (327)
T cd06382 62 QGVAAIFGPSSSEASSIVQSICDAKEIPHIQT 93 (327)
T ss_pred cCcEEEECCCChhHHHHHHHHHhccCCCceec
Confidence 36889999999999999999999999999974
No 23
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=90.70 E-value=0.4 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=28.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|+|
T Consensus 67 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is~ 98 (389)
T cd06352 67 HNVDAFIGPGCPYACAPVARLAAHWNIPMISW 98 (389)
T ss_pred cCCcEEECCCChhHHHHHHHHHhcCCCCEecc
Confidence 46789999999999999999999999999975
No 24
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=90.21 E-value=0.56 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=28.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 61 ~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~ 92 (324)
T cd06368 61 QGVAAIFGPSSSSSANTVQSICDALEIPHITT 92 (324)
T ss_pred cCcEEEECCCCHHHHHHHHHHHhccCCCcEEe
Confidence 35789999999999999999999999999874
No 25
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=90.03 E-value=0.57 Score=29.25 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=27.8
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 61 ~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~ 92 (382)
T cd06380 61 RGVFAIFGSYDKSSVNTLTSYSDALHVPFITP 92 (382)
T ss_pred cCcEEEEecCcHHHHHHHHHHHhcCCCCeEec
Confidence 45889999998888888999999999999874
No 26
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=88.68 E-value=0.79 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=28.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+.++..+..++.+.+...+|+|+
T Consensus 61 ~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 61 QGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred cCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 3688999999999999999999999999986
No 27
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=87.61 E-value=0.67 Score=29.38 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=28.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+.++..+..++.+-+-..+|+|+
T Consensus 62 ~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~ 92 (371)
T cd06388 62 RGVFAIFGLYDKRSVHTLTSFCSALHISLIT 92 (371)
T ss_pred CCceEEEecCCHHHHHHHHHHhhCCCCCeee
Confidence 4589999999999999999999999999986
No 28
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=87.10 E-value=1.4 Score=26.42 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 62 ~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~ 93 (328)
T cd06351 62 QGVAAIFGPTSSESASAVQSICDALEIPHISI 93 (328)
T ss_pred cCcEEEECCCCHHHHHHHHHHhccCCCCeEEe
Confidence 45788999999999999999999999999874
No 29
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=86.61 E-value=1.4 Score=27.11 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=28.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+.....+|+|++
T Consensus 65 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~ 96 (350)
T cd06366 65 KPVVAIIGPQCSSVAEFVAEVANEWNVPVLSF 96 (350)
T ss_pred CCceEEECCCcHHHHHHHHHHhhcCCeeEEec
Confidence 36889999999999999999999999999874
No 30
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=84.84 E-value=1.8 Score=28.11 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=28.8
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++..+..++.+-+-+.+|.|++
T Consensus 61 ~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~ 92 (400)
T cd06392 61 QGILALVTSTGCASANALQSLTDAMHIPHLFV 92 (400)
T ss_pred cCeEEEECCCchhHHHHHHHHhccCcCCcEee
Confidence 45889999999999999999999999999874
No 31
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=82.62 E-value=1.6 Score=27.59 Aligned_cols=31 Identities=3% Similarity=0.110 Sum_probs=28.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+.++..+..++.+-+-+.+|+|+
T Consensus 56 ~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~ 86 (370)
T cd06389 56 RGVYAIFGFYDKKSVNTITSFCGTLHVSFIT 86 (370)
T ss_pred cCcEEEEecCCHHHHHHHHHhhccCCCCeee
Confidence 5689999999999999999999999999985
No 32
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=81.91 E-value=2.8 Score=26.41 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=26.2
Q ss_pred cceEEEeCCCChHH-HHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVT-SIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~-s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++.. ...++.+-+-..+|.|++
T Consensus 64 ~gV~AIiGp~ss~~~~~~v~~i~~~~~VP~Is~ 96 (333)
T cd06394 64 KGVVSVLGPSSSPASSSIVSHICGEKEIPHFKV 96 (333)
T ss_pred cCeEEEECCCCchHHHHHHHHHhhccCCceEEe
Confidence 46889999888865 458888999999999874
No 33
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=80.12 E-value=3.5 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+.....+|.|++
T Consensus 66 ~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~ 97 (334)
T cd06347 66 DKVVAIIGPVTSGATLAAGPIAEDAKVPMITP 97 (334)
T ss_pred cCeEEEEcCCccHhHHHhHHHHHHCCCeEEcC
Confidence 36888999888888888989999999999874
No 34
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=79.84 E-value=2.3 Score=26.95 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=28.1
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++..+..++.+-+...+|.|++
T Consensus 55 ~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~ 86 (364)
T cd06390 55 KGVYAIFGFYDRKTVNMLTSFCGALHVCFITP 86 (364)
T ss_pred cCceEEEccCChhHHHHHHHhhcCCCCCceec
Confidence 45889999999999999999999999998863
No 35
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=78.11 E-value=4.8 Score=24.59 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=27.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++..+..++..+...++|.|++
T Consensus 66 ~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~~ 97 (340)
T cd06349 66 PRIVAVLGDFSSGVSMAASPIYQRAGLVQLSP 97 (340)
T ss_pred CCeEEEECCCccHhHHHhHHHHHhCCCeEEec
Confidence 45788999999999999999999999998864
No 36
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=77.49 E-value=5 Score=24.55 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=27.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+.++..+..+..++...++|.|++
T Consensus 65 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 65 PEILGVVGHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred cCceEEEcCCCcHHHHHHHHHHhhcCceEEcc
Confidence 46788999988888888888999999998863
No 37
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=74.21 E-value=6.3 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+..-..+|.|++
T Consensus 66 ~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (344)
T cd06345 66 DKVDAVVGGYSSEVVLALQDVAAENKVPFIVT 97 (344)
T ss_pred CCceEEECCcchHHHHHHHHHHHHcCCcEEec
Confidence 36788999999999989999999999999863
No 38
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=73.15 E-value=5.9 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=22.8
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+.. .++.+...+.+|+|++
T Consensus 68 ~~v~aiiGp~~S~~--~~a~i~~~~~iP~Is~ 97 (404)
T cd06370 68 RGVVAFIGPECTCT--TEARLAAAWNLPMISY 97 (404)
T ss_pred cCceEEECCCchhH--HHHHHHhhcCCcEEec
Confidence 35788999877643 4567888999999975
No 39
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=73.11 E-value=6.8 Score=23.67 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=26.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.++...++|.|++
T Consensus 66 ~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~ 96 (334)
T cd06342 66 GVVGVVGHLNSGVTIPASPIYADAGIVMISP 96 (334)
T ss_pred CceEEECCCccHhHHHhHHHHHhCCCeEEec
Confidence 5778999988888889999999999998864
No 40
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=70.82 E-value=5.1 Score=24.30 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=26.9
Q ss_pred cceEEEeCCCChHHHHHH-HHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQV-ANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~-a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..+ +.+....++|+|++
T Consensus 66 ~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~ 98 (312)
T cd06346 66 DGVPGIVGAACSGVTIAALTSVAVPNGVVMISP 98 (312)
T ss_pred cCCCEEEccccchhhHhhhhhhhccCCcEEEec
Confidence 367889999888888888 88888899998863
No 41
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=70.82 E-value=6 Score=24.15 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=26.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+.++..+..++.......+|+|++
T Consensus 71 ~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 101 (345)
T cd06338 71 KVDFLLGPYSSGLTLAAAPVAEKYGVPMVAG 101 (345)
T ss_pred CccEEecCCcchhHHHHHHHHHHhCCcEEec
Confidence 5778999888888888888899999999873
No 42
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=70.32 E-value=7.8 Score=23.92 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=27.2
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.++....+|.|++
T Consensus 69 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 100 (347)
T cd06340 69 EGVVALVGAYQSAVTLAASQVAERYGVPFVVD 100 (347)
T ss_pred CCceEEecccchHhHHHHHHHHHHhCCCEEec
Confidence 36788999988888888899998899999863
No 43
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=69.07 E-value=8.8 Score=23.43 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=27.1
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++......++|+|++
T Consensus 65 ~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 96 (334)
T cd06327 65 DGVDMIVGGPNSAVALAVQEVAREKKKIYIVT 96 (334)
T ss_pred cCceEEECCccHHHHHHHHHHHHHhCceEEec
Confidence 36789999988898888888989899998863
No 44
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=65.28 E-value=12 Score=22.86 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=26.0
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..+..+.....+|.|++
T Consensus 66 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 97 (344)
T cd06348 66 DRVLAIIGPTLSQQAFAADPIAERAGVPVVGP 97 (344)
T ss_pred cCceEEECCCCcHHHHhhhHHHHhCCCCEEec
Confidence 36789999888888888878888889998863
No 45
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=62.87 E-value=15 Score=23.67 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=25.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+.++..+..++.+-..+.+|.|+
T Consensus 61 ~gv~ai~Gp~~~~~~~~v~~~~~~~~vP~i~ 91 (400)
T cd06391 61 QGILALVSSIGCTSAGSLQSLADAMHIPHLF 91 (400)
T ss_pred CCeEEEECCCcchHHHHHHHHhccCcCCeEE
Confidence 4467999988888888888888999999885
No 46
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.39 E-value=15 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=26.7
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+.++..+..+...+...++|.|+
T Consensus 73 ~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~ 103 (362)
T cd06343 73 DEVFAMVGGLGTPTNLAVQKYLNEKKVPQLF 103 (362)
T ss_pred cCeEEEEecCCcHHHHHhHHHHHhcCCceEe
Confidence 4578899999999888888899999999886
No 47
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=60.12 E-value=14 Score=22.62 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=26.4
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++..+....+|.|++
T Consensus 67 ~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~ 97 (346)
T cd06330 67 GVDMLIGLISSGVALAVAPVAEELKVFFIAT 97 (346)
T ss_pred CCcEEEcccchHHHHHHHHHHHHcCCeEEEc
Confidence 5778899888888888899999999998864
No 48
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=58.21 E-value=22 Score=21.94 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=26.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+.....+..++....+|.|+
T Consensus 66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (347)
T cd06335 66 EKVVAVLGGLHTPVALANLEFIQQNKIPLIG 96 (347)
T ss_pred CCeEEEEcCCCCHHHHhhhHHHHhcCCcEEe
Confidence 3578999988888888888899999999886
No 49
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=57.49 E-value=14 Score=23.67 Aligned_cols=31 Identities=3% Similarity=0.089 Sum_probs=26.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.-+.+++|+.+...+-.+..+-+.+.+|.|.
T Consensus 62 ~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~ 92 (372)
T cd06387 62 RGVYAIFGFYDQMSMNTLTSFCGALHTSFIT 92 (372)
T ss_pred cccEEEEecCCHhHHHHHHHhhccccCCeee
Confidence 4578999988888888888888999999885
No 50
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=57.00 E-value=19 Score=22.50 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=20.8
Q ss_pred ceEEEeC-CC-ChH---HHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVG-AA-SSV---TSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig-~~-~s~---~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++| +. ++. .+..++.+...+.+|+|++
T Consensus 80 ~V~aii~~~~~ss~~~~~~~~v~~~~~~~~iP~Is~ 115 (377)
T cd06379 80 QVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGI 115 (377)
T ss_pred ceEEEEEeCCCCCcccccHHHHHHHhhCCCCcEEec
Confidence 4667653 33 232 3556777888999999985
No 51
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=54.94 E-value=22 Score=21.82 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=26.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+.....+.....-..+|.|+
T Consensus 67 ~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~ 97 (333)
T cd06328 67 DGVDILVGSTSSGVALAVLPVAEENKKILIV 97 (333)
T ss_pred cCCeEEEccCCcHHHHHHHHHHHHhCCcEEe
Confidence 3678999999999998888888888899885
No 52
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=52.38 E-value=32 Score=19.90 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=23.6
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+.....++.+.....+|.|++
T Consensus 67 ~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~ 97 (299)
T cd04509 67 GVDALVGPVSSGVALAVAPVAEALKIPLISP 97 (299)
T ss_pred CceEEEcCCCcHHHHHHHHHHhhCCceEEec
Confidence 5778899777766667777777788888763
No 53
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=48.76 E-value=26 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+..+.. .++|.|+
T Consensus 66 ~~v~aviG~~~s~~a~a~~~~~~-~~vp~i~ 95 (333)
T cd06358 66 GGVDAIIGWHTSAVRNAVAPVVA-GRVPYVY 95 (333)
T ss_pred CCCcEEEecCcHHHHHHHHHHHh-cCceEEe
Confidence 35789999888888888888888 8888875
No 54
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=47.96 E-value=32 Score=21.02 Aligned_cols=31 Identities=16% Similarity=-0.066 Sum_probs=25.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+.....++..+....+|.|+
T Consensus 64 ~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~ 94 (333)
T cd06359 64 DKVDFVTGVVFSNVLLAVVPPVLESGTFYIS 94 (333)
T ss_pred cCCcEEEccCCcHHHHHHHHHHHHcCCeEEe
Confidence 3577899988888888888888888899875
No 55
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=47.62 E-value=28 Score=21.23 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=25.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+.++..+..+........+|.|+
T Consensus 67 ~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 67 KVDAVFGCYTSASRKAVLPVVERGRGLLFY 96 (333)
T ss_pred CCcEEEecccHHHHHHHHHHHHhcCceEEe
Confidence 678899998898888888888888888875
No 56
>PHA02105 hypothetical protein
Probab=46.62 E-value=13 Score=18.09 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=11.2
Q ss_pred HHHHHhccCCCceeeC
Q psy9921 46 QVANLLRLFKIPQASF 61 (61)
Q Consensus 46 ~~a~ll~~~~iPqISY 61 (61)
.+..+-..|.+|||-|
T Consensus 28 ~~~ql~svfsipqi~y 43 (68)
T PHA02105 28 LFDQLKTVFSIPQIKY 43 (68)
T ss_pred HHHHHHHhccccceEE
Confidence 3455667888999765
No 57
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=45.59 E-value=35 Score=21.51 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=26.1
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..++.+..-..+|.|+
T Consensus 91 ~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 121 (369)
T PRK15404 91 DGIKYVIGHLCSSSTQPASDIYEDEGILMIT 121 (369)
T ss_pred CCceEEEcCCCchhHHHhHHHHHHCCCeEEe
Confidence 3577899988888888888888889999886
No 58
>PF05233 PHB_acc: PHB accumulation regulatory domain; InterPro: IPR007897 The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, for example the production of poly-beta-hydroxybutyrate (PHB) which is formed via the polymerisation of D(-)-3-hydroxybutyryl-CoA []. The function of this domain is unknown.
Probab=43.67 E-value=22 Score=15.82 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=9.6
Q ss_pred hhHHHHHHHhhh
Q psy9921 2 YFKWQGSYLRSI 13 (61)
Q Consensus 2 ~~~~~~~~~~~~ 13 (61)
|||++++.+...
T Consensus 24 YLEqS~~~f~~~ 35 (41)
T PF05233_consen 24 YLEQSMQMFAEM 35 (41)
T ss_pred HHHHHHHHHHHH
Confidence 899999888643
No 59
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=39.71 E-value=41 Score=20.66 Aligned_cols=30 Identities=13% Similarity=-0.034 Sum_probs=23.2
Q ss_pred ceEEEeCCCChHHHHHH-------HHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQV-------ANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~-------a~ll~~~~iPqIS 60 (61)
.+.+++|+..+..+..+ ...+.-..+|.|+
T Consensus 66 ~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~ 102 (342)
T cd06329 66 GVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLN 102 (342)
T ss_pred CCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEe
Confidence 57789998888887777 5666777888875
No 60
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=39.65 E-value=42 Score=21.23 Aligned_cols=30 Identities=7% Similarity=-0.112 Sum_probs=25.6
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..|..+..+..+..-..+|.|+
T Consensus 59 ~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~ 88 (347)
T TIGR03863 59 GVRFFVLDLPAAALLALADAAKAKGALLFN 88 (347)
T ss_pred CCCEEEecCChHHHHHHHHHHHhCCcEEEe
Confidence 477899999999999999988888888875
No 61
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=39.41 E-value=49 Score=20.43 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=23.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+..+..++.+.....+|.|+
T Consensus 59 ~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 88 (336)
T cd06339 59 GADIIVGPLLKENVAALAAAAAELGVPVLA 88 (336)
T ss_pred CCCEEEccCCHHHHHHHHhhhccCCCCEEE
Confidence 466889988888777777777777888774
No 62
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=39.06 E-value=53 Score=18.92 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=16.6
Q ss_pred EEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 33 SGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 33 ~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+.++|++.+..+.....+-..+.+|+|+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 3566766655554444555557777775
No 63
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=38.22 E-value=87 Score=18.79 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=22.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|...+.....+...+....+|.|+
T Consensus 65 ~~v~~vig~~~s~~~~~~~~~~~~~~vP~v~ 95 (312)
T cd06333 65 DKVDAIIGPSTTPATMAVAPVAEEAKTPMIS 95 (312)
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcCCCEEE
Confidence 3678899876666666666677777888875
No 64
>PRK01184 hypothetical protein; Provisional
Probab=37.05 E-value=71 Score=17.86 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=17.9
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+++++|++.+.-+. ++.++..+.++.|+
T Consensus 3 ~i~l~G~~GsGKsT-~a~~~~~~g~~~i~ 30 (184)
T PRK01184 3 IIGVVGMPGSGKGE-FSKIAREMGIPVVV 30 (184)
T ss_pred EEEEECCCCCCHHH-HHHHHHHcCCcEEE
Confidence 56778876666554 45666666666554
No 65
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=34.69 E-value=67 Score=19.29 Aligned_cols=30 Identities=23% Similarity=0.072 Sum_probs=22.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+.....+...+....+|.|+
T Consensus 65 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 94 (333)
T cd06332 65 KVDVVVGPVFSNVALAVVPSLTESGTFLIS 94 (333)
T ss_pred CCcEEEcCCccHHHHHHHHHHhhcCCeEEe
Confidence 577889977766666666777777888875
No 66
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=34.53 E-value=68 Score=18.48 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+.....+...+....+|.|+
T Consensus 66 ~v~~iig~~~~~~~~~~~~~~~~~~ip~i~ 95 (298)
T cd06268 66 GVDAVIGPLSSGVALAAAPVAEEAGVPLIS 95 (298)
T ss_pred CceEEEcCCcchhHHhhHHHHHhCCCcEEc
Confidence 466888877666665677778778888775
No 67
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=34.14 E-value=77 Score=18.76 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=19.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
..++|++|+..+.-+ +++.++....+|-|
T Consensus 2 ~~iIglTG~igsGKS-tva~~~~~~G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKS-TVAKILAELGFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHH-HHHHHHHHcCCeEE
Confidence 357889997776665 55666666656654
No 68
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=33.87 E-value=62 Score=19.55 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+.....+...+...++|.|+
T Consensus 65 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 94 (336)
T cd06360 65 KVDVVVGPVHSGEALAMVKVLREPGTPLIN 94 (336)
T ss_pred CCcEEEccCccHhHHHHHHHHHhcCceEEe
Confidence 466788887777777777777777888875
No 69
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=33.83 E-value=60 Score=19.92 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=25.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+..+..-..+|.|+
T Consensus 66 ~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 66 DKVDVVWGGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred CCCCEEEeCcchHHHHHHHHHHHhcCceEEe
Confidence 4678899988888888888888888888764
No 70
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=32.62 E-value=81 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=23.3
Q ss_pred cceEEEeCC-CChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGA-ASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~-~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+ .+......+..+-+.+.+|.|+
T Consensus 80 ~GV~AIfg~p~s~~~~~~v~sic~~l~IP~I~ 111 (382)
T cd06377 80 QGVSALLAFPQTRPELVQLDFVSAALEIPVVS 111 (382)
T ss_pred CCeEEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 567888895 5545556777788889999886
No 71
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.42 E-value=63 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=23.7
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..++..+.-..+|.|+
T Consensus 68 d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 98 (357)
T cd06337 68 DKVDLLLAGGTPDTTNPVSDQCEANGVPCIS 98 (357)
T ss_pred cCccEEEecCCcchhhHHHHHHHHhCCCeEE
Confidence 3577888988888887777777777777764
No 72
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=29.86 E-value=99 Score=18.65 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|...+..+..+...+....+|.|+
T Consensus 68 ~v~avig~~~s~~~~~~~~~~~~~~iP~i~ 97 (336)
T cd06326 68 KVFALFGYVGTPTTAAALPLLEEAGVPLVG 97 (336)
T ss_pred CcEEEEeCCCchhHHHHHHHHHHcCCeEEE
Confidence 678888876665555566667777788765
No 73
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=28.52 E-value=1.2e+02 Score=17.61 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=16.3
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
.++++|+..+.-+.....+-..+..|.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i 30 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL 30 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe
Confidence 5788887777766444444333355544
No 74
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=28.23 E-value=1.1e+02 Score=16.82 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=15.8
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCc
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIP 57 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iP 57 (61)
.+++.++|++.+.-+.....+...+..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3567888877666665444444333333
No 75
>PLN02200 adenylate kinase family protein
Probab=28.19 E-value=1.2e+02 Score=18.11 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+..+.++|++.+.-+.....+...+.++.|+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4567888877776665555555555555554
No 76
>PLN02674 adenylate kinase
Probab=27.79 E-value=1.3e+02 Score=18.38 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=21.0
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.-+.++|++.+..+.....+-..+.++.||
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 345778888877776666666777777765
No 77
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=27.74 E-value=1e+02 Score=17.03 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=12.9
Q ss_pred EEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 33 SGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 33 ~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
+.++|++.+.-+.....+...+..+.|
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i 28 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL 28 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 345665555555443444444444444
No 78
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=27.00 E-value=96 Score=19.12 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=15.4
Q ss_pred ceEEEeCCCChHHHHHHHHH
Q psy9921 31 VISGVVGAASSVTSIQVANL 50 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~l 50 (61)
+..|++|++++..+...=+.
T Consensus 2 k~iGilGGMgpeST~~yyr~ 21 (230)
T COG1794 2 KTIGILGGMGPESTAPYYRK 21 (230)
T ss_pred ceeEeccCCChHHHHHHHHH
Confidence 46799999999988765443
No 79
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=26.26 E-value=1.2e+02 Score=17.46 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=14.1
Q ss_pred EEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 34 GVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 34 ~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.++|++.+.-+.....+-..+.++.|+
T Consensus 3 ~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 3 VLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 456665555554444444455556554
No 80
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=26.04 E-value=87 Score=18.63 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=18.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKI 56 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~i 56 (61)
.+.++++|+.++..+..+..+-..|+-
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 357899998888887766655555543
No 81
>KOG3079|consensus
Probab=25.11 E-value=1.1e+02 Score=18.35 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+++.++|++.+.---..+.+...|.+.++|
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky~ftHlS 38 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKYGFTHLS 38 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHcCceeec
Confidence 5688889988776666666666666655554
No 82
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=24.87 E-value=97 Score=17.88 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=15.5
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
++|++|+..+.-| +++.++.-..+|-|
T Consensus 2 iIglTG~igsGKS-tv~~~l~~~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKS-TVSKILAELGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHH-HHHHHHHHTT-EEE
T ss_pred EEEEECCCcCCHH-HHHHHHHHCCCCEE
Confidence 5688887776666 44444444555543
No 83
>PTZ00088 adenylate kinase 1; Provisional
Probab=24.75 E-value=1.3e+02 Score=18.10 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=18.3
Q ss_pred EEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 33 SGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 33 ~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+.++|++.+.-+.....+-..+.++.|+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 5678877766665555555666677765
No 84
>PRK14530 adenylate kinase; Provisional
Probab=24.57 E-value=1.4e+02 Score=17.22 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=16.5
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
.+.++|++.+.-+.....+-..+.++.|
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4677887776666544444455555554
No 85
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=24.44 E-value=1e+02 Score=19.58 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=23.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
..+.+++|+..+..+..+..+..-..+|.|
T Consensus 67 d~v~~viG~~~S~~~~A~~~~~~~~~~~~i 96 (374)
T TIGR03669 67 DKVDALWAGYSSATREAIRPIIDRNEQLYF 96 (374)
T ss_pred CCCCEEEcCCchHHHHHHHHHHHhcCceEE
Confidence 357788999889888888888777777765
No 86
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=24.16 E-value=66 Score=17.42 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=12.6
Q ss_pred eCCCChHHHHHHHHHhccCCCceee
Q psy9921 36 VGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 36 ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+|++.+.-+.....+-..+.++.||
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCCChHHHHHHHHHhcCcceec
Confidence 4555555444444454455555554
No 87
>PF08971 GlgS: Glycogen synthesis protein; InterPro: IPR015065 Members of this protein are involved in glycogen synthesis in Enterobacteria. The structure of the polypeptide chain comprises a bundle of two parallel amphipathic helices, alpha-1 and alpha-3, and a short hydrophobic helix alpha-2 sandwiched between them []. ; GO: 0005978 glycogen biosynthetic process; PDB: 1RRZ_A.
Probab=24.03 E-value=73 Score=15.82 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.6
Q ss_pred ChhHHHHHHHhhhc
Q psy9921 1 LYFKWQGSYLRSIS 14 (61)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (61)
+|-...+|||+++-
T Consensus 5 ~ys~~nfDFlAsS~ 18 (66)
T PF08971_consen 5 VYSHTNFDFLASSF 18 (66)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhccccchHHHHHH
Confidence 46778899998664
No 88
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.89 E-value=86 Score=19.33 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=22.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+.++..... +.+..-..+|.|+
T Consensus 71 ~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~ 99 (347)
T cd06336 71 GVKFILGPIGGGITAA-QQITERNKVLLLT 99 (347)
T ss_pred CceEEEeCCCCchhhh-hhhhhhcCceEEe
Confidence 5778899887777766 7788788888876
No 89
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=23.33 E-value=1.2e+02 Score=18.69 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=23.0
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
..+.+++|+..+..+..+..++.-..+|.|
T Consensus 66 ~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i 95 (348)
T cd06355 66 DKVAAVFGCWTSASRKAVLPVFERHNGLLF 95 (348)
T ss_pred CCCcEEEeccchhhHHHHHHHHhccCCcee
Confidence 457889998888888888877777666655
No 90
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=22.02 E-value=51 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+.....--++|.|+
T Consensus 77 ~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~ 107 (366)
T COG0683 77 DGVDAVVGPTTSGVALAASPVAEEAGVPLIS 107 (366)
T ss_pred cCceEEEEeccCcccccchhhHhhcCceEEe
Confidence 4678899999899888888888888888876
No 91
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.84 E-value=96 Score=18.70 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=24.0
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+.....+...+....+|.|+
T Consensus 68 ~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~ 98 (343)
T PF13458_consen 68 DGVDAVVGPLSSAQAEAVAPIAEEAGIPYIS 98 (343)
T ss_dssp STESEEEESSSHHHHHHHHHHHHHHT-EEEE
T ss_pred cCcEEEEecCCcHHHHHHHHHHHhcCcEEEE
Confidence 4577889988888888888888888888764
No 92
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=20.30 E-value=1.1e+02 Score=15.44 Aligned_cols=13 Identities=15% Similarity=-0.067 Sum_probs=10.6
Q ss_pred hhHHHHHHHhhhc
Q psy9921 2 YFKWQGSYLRSIS 14 (61)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (61)
+||+|+..++...
T Consensus 43 ~LEaAl~~lR~~~ 55 (72)
T PF09498_consen 43 RLEAALRQLRQDN 55 (72)
T ss_pred HHHHHHHHHHhhC
Confidence 6899999998664
No 93
>PRK14527 adenylate kinase; Provisional
Probab=20.02 E-value=1.9e+02 Score=16.38 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=15.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCc
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIP 57 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iP 57 (61)
+.++.++|++.+.-+.....+-..+..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~ 33 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLK 33 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4577888877666655444444333333
Done!