Query psy9921
Match_columns 61
No_of_seqs 104 out of 1006
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:04:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq4_A Mglur7, metabotropic gl 98.7 2.1E-08 7.2E-13 63.1 5.7 59 3-61 84-147 (481)
2 3ks9_A Mglur1, metabotropic gl 98.6 5.8E-08 2E-12 61.5 5.7 56 3-61 89-158 (496)
3 2e4u_A Metabotropic glutamate 98.6 6.1E-08 2.1E-12 61.8 5.6 56 3-61 82-147 (555)
4 3sm9_A Mglur3, metabotropic gl 98.6 1.3E-07 4.5E-12 59.6 5.5 59 3-61 81-146 (479)
5 1jdp_A NPR-C, atrial natriuret 95.6 0.0065 2.2E-07 37.3 2.2 31 31-61 84-114 (441)
6 1dp4_A Atrial natriuretic pept 94.7 0.021 7.3E-07 34.7 2.6 32 30-61 76-107 (435)
7 4gpa_A Glutamate receptor 4; P 93.7 0.035 1.2E-06 33.0 2.0 32 30-61 68-99 (389)
8 3h6g_A Glutamate receptor, ion 92.4 0.083 2.8E-06 31.8 2.4 32 30-61 70-101 (395)
9 3hsy_A Glutamate receptor 2; l 92.1 0.062 2.1E-06 32.4 1.6 31 31-61 60-90 (376)
10 3qel_B Glutamate [NMDA] recept 91.7 0.048 1.6E-06 33.2 0.8 31 31-61 63-96 (364)
11 3o21_A Glutamate receptor 3; p 91.0 0.08 2.7E-06 32.2 1.2 32 30-61 68-99 (389)
12 4f11_A Gamma-aminobutyric acid 90.8 0.11 3.9E-06 31.6 1.8 31 31-61 85-115 (433)
13 3saj_A Glutamate receptor 1; r 90.7 0.1 3.6E-06 31.4 1.6 31 31-61 67-97 (384)
14 3kg2_A Glutamate receptor 2; I 90.0 0.16 5.3E-06 33.5 2.0 31 31-61 60-90 (823)
15 3om0_A Glutamate receptor, ion 88.7 0.23 7.9E-06 29.9 2.0 32 30-61 69-101 (393)
16 3qek_A NMDA glutamate receptor 86.9 0.36 1.2E-05 28.9 2.1 32 30-61 64-100 (384)
17 3i09_A Periplasmic branched-ch 74.8 2.6 9E-05 24.9 2.8 32 30-61 70-101 (375)
18 3n0x_A Possible substrate bind 70.8 2.8 9.4E-05 25.0 2.2 31 30-60 72-102 (374)
19 3n0w_A ABC branched chain amin 70.3 2.5 8.6E-05 25.1 2.0 32 30-61 72-103 (379)
20 4gnr_A ABC transporter substra 69.5 5.1 0.00018 23.4 3.2 32 30-61 74-105 (353)
21 4f06_A Extracellular ligand-bi 68.9 2 6.8E-05 25.6 1.3 32 30-61 71-102 (371)
22 4eyg_A Twin-arginine transloca 66.6 3.8 0.00013 24.0 2.2 32 30-61 71-102 (368)
23 3i45_A Twin-arginine transloca 66.4 3.6 0.00012 24.5 2.1 31 31-61 73-103 (387)
24 3lop_A Substrate binding perip 65.9 8.7 0.0003 22.5 3.7 30 31-60 73-104 (364)
25 3td9_A Branched chain amino ac 63.5 5.9 0.0002 23.3 2.6 31 31-61 81-111 (366)
26 3umf_A Adenylate kinase; rossm 61.7 8.4 0.00029 22.0 3.0 31 30-60 29-59 (217)
27 3hut_A Putative branched-chain 61.1 9.7 0.00033 22.2 3.3 31 30-60 71-101 (358)
28 3h5l_A Putative branched-chain 58.7 2.4 8E-05 25.6 0.3 31 30-60 82-112 (419)
29 3ipc_A ABC transporter, substr 58.2 8.9 0.00031 22.3 2.8 31 30-60 68-98 (356)
30 4evq_A Putative ABC transporte 58.2 6.7 0.00023 23.0 2.2 31 31-61 82-112 (375)
31 3sg0_A Extracellular ligand-bi 56.8 12 0.00042 21.9 3.2 30 31-60 89-118 (386)
32 1usg_A Leucine-specific bindin 56.0 10 0.00035 21.9 2.7 31 31-61 69-99 (346)
33 3sr0_A Adenylate kinase; phosp 53.0 14 0.00048 20.7 2.9 29 32-60 2-30 (206)
34 3snr_A Extracellular ligand-bi 48.1 11 0.00039 21.7 2.1 30 31-60 69-98 (362)
35 2h4a_A YRAM (HI1655); perplasm 47.3 16 0.00056 21.8 2.7 31 30-60 55-86 (325)
36 3eaf_A ABC transporter, substr 44.0 14 0.00046 22.0 2.0 30 30-60 75-104 (391)
37 3tlx_A Adenylate kinase 2; str 41.4 24 0.00082 20.0 2.7 31 30-60 29-59 (243)
38 1pea_A Amidase operon; gene re 39.8 27 0.00091 20.7 2.8 31 30-60 74-104 (385)
39 3gmt_A Adenylate kinase; ssgci 28.2 52 0.0018 19.0 2.7 29 32-60 10-38 (230)
40 1cke_A CK, MSSA, protein (cyti 27.4 68 0.0023 17.3 3.0 28 31-58 6-33 (227)
41 3ojc_A Putative aspartate/glut 25.5 58 0.002 18.5 2.5 19 31-49 3-21 (231)
42 3lkb_A Probable branched-chain 24.6 32 0.0011 20.3 1.3 29 31-60 75-103 (392)
43 2zsk_A PH1733, 226AA long hypo 22.4 71 0.0024 17.8 2.5 19 32-50 3-21 (226)
44 4i1u_A Dephospho-COA kinase; s 21.8 1E+02 0.0036 17.4 3.1 29 30-59 9-37 (210)
45 1tev_A UMP-CMP kinase; ploop, 20.8 1E+02 0.0035 16.0 3.0 17 30-46 3-19 (196)
46 1ukz_A Uridylate kinase; trans 20.2 1.1E+02 0.0038 16.2 3.5 30 30-59 15-44 (203)
No 1
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=98.73 E-value=2.1e-08 Score=63.07 Aligned_cols=59 Identities=34% Similarity=0.629 Sum_probs=41.0
Q ss_pred hHHHHHHHhhhcCCcCCCcccCCCCC-----CcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISNIDDTEYHCNKTQI-----RKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~~~~pny~C~~~~~-----~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+++++.+...+.+|||+|..... +..+.+++|+..+..+..++.++..+++|||||
T Consensus 84 ~~~a~~ll~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~ 147 (481)
T 3mq4_A 84 LEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISY 147 (481)
T ss_dssp HHHHGGGGGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEES
T ss_pred HHHHHHHHhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEcc
Confidence 56778888765545789999975311 035899999999999999999999999999997
No 2
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=98.64 E-value=5.8e-08 Score=61.46 Aligned_cols=56 Identities=39% Similarity=0.639 Sum_probs=37.5
Q ss_pred hHHHHHHHhh----hcCCcCCCcccCC----------CCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRS----ISNIDDTEYHCNK----------TQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~----~~~~~~pny~C~~----------~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+++++++ +.+..+|||+|.. + ..+.+++|+..+..+..++.++..+++|||||
T Consensus 89 ~~~a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~---~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~ 158 (496)
T 3ks9_A 89 LEQSIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTK---KPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAY 158 (496)
T ss_dssp HHHHHHHHSTTC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEES
T ss_pred HHHHHHHHHhhhccccccCCCCccccCcccccccccCC---CceEEEECCCccHHHHHHHHHHhhcceeEECC
Confidence 5678888843 2345689999962 3 57999999999999999999999999999997
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=98.63 E-value=6.1e-08 Score=61.79 Aligned_cols=56 Identities=45% Similarity=0.762 Sum_probs=38.4
Q ss_pred hHHHHHHHhhhcC-CcCCCcccCC---------CCCCcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISN-IDDTEYHCNK---------TQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~-~~~pny~C~~---------~~~~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+++++.+... ..+|||+|.. + ..+.+++|+..+..+..++.+++.+++|||||
T Consensus 82 ~~~a~~~l~~~~~~~~~~ny~C~~~~~~~~~~~~---~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~ 147 (555)
T 2e4u_A 82 LEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIP---LLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 147 (555)
T ss_dssp HHHHHHHHHTTC--------------------CC---CCEEEEEECSSHHHHHHHHHHHGGGTCCEEES
T ss_pred HHHHHHHHhCcCcccCCCCcccCCCccccccccC---CceEEEECCCCcHHHHHHHHHHhCcCCceEeC
Confidence 4567888864432 2789999975 4 56899999999999999999999999999987
No 4
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=98.55 E-value=1.3e-07 Score=59.59 Aligned_cols=59 Identities=42% Similarity=0.709 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhcC-CcCCCcccCCCCC------CcceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 3 FKWQGSYLRSISN-IDDTEYHCNKTQI------RKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 3 ~~~~~~~~~~~~~-~~~pny~C~~~~~------~~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
++.+++++.+... ..+|||+|..++. +.++.+++|+..|..+..++.++..+++|||||
T Consensus 81 ~~~~~~ll~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~ 146 (479)
T 3sm9_A 81 LEQSLEFVRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 146 (479)
T ss_dssp HHHHHHHHHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEES
T ss_pred HHHHHHHHhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECC
Confidence 5677888865432 2468999976421 135899999999999999999999999999997
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=95.57 E-value=0.0065 Score=37.29 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=28.9
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.++..+.+|+|||
T Consensus 84 ~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~ 114 (441)
T 1jdp_A 84 KPDLILGPVCEYAAAPVARLASHWDLPMLSA 114 (441)
T ss_dssp CCSEEECCCSHHHHHHHHHHHHHHTCCEEES
T ss_pred CceEEECCCchhhHHHHHHHHhhcCCcEEcC
Confidence 5789999999999999999999999999986
No 6
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=94.66 E-value=0.021 Score=34.74 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=28.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.++..+++|+|||
T Consensus 76 ~~v~aviG~~~S~~~~av~~~~~~~~ip~is~ 107 (435)
T 1dp4_A 76 HSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTA 107 (435)
T ss_dssp HCCSEEECCCSHHHHHHHHHHHHHHTCCEEES
T ss_pred cCceEEECCCChHHHHHHHHHHHhcCCcEEcc
Confidence 35679999999999999999999999999986
No 7
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=93.69 E-value=0.035 Score=33.05 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=28.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 68 ~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~ 99 (389)
T 4gpa_A 68 RGVFAIFGLYDKRSVHTLTSFCSALHISLITP 99 (389)
T ss_dssp TTCSEEEECCCTTTHHHHHHHHHHTTCEEEEC
T ss_pred cCCEEEEeCCccHHHHHHHHHHHHhCCCceec
Confidence 45789999999999999999999999999874
No 8
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=92.44 E-value=0.083 Score=31.83 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=28.9
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+++|+|+|
T Consensus 70 ~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~ 101 (395)
T 3h6g_A 70 LGVAAIFGPSHSSSANAVQSICNALGVPHIQT 101 (395)
T ss_dssp HCCSCEECCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cCcEEEECCCChhHHHHHHHHHhcCCCCeEee
Confidence 35778999999999999999999999999985
No 9
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=92.13 E-value=0.062 Score=32.41 Aligned_cols=31 Identities=3% Similarity=0.040 Sum_probs=28.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.+...+.+|+|++
T Consensus 60 ~V~aiiG~~~S~~~~av~~~~~~~~ip~is~ 90 (376)
T 3hsy_A 60 GVYAIFGFYDKKSVNTITSFCGTLHVSFITP 90 (376)
T ss_dssp TCSEEEECCCTTTHHHHHHHHHHHTCEEEEC
T ss_pred CcEEEECCCchhHHHHHHHHhccCcCceeec
Confidence 4779999999999999999999999999985
No 10
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=91.70 E-value=0.048 Score=33.16 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=22.3
Q ss_pred ceEEEeCCCC-hHHHHH--HHHHhccCCCceeeC
Q psy9921 31 VISGVVGAAS-SVTSIQ--VANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~-s~~s~~--~a~ll~~~~iPqISY 61 (61)
.+.+++|++. +..+.. ++.+.+.+.+|||||
T Consensus 63 ~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~ 96 (364)
T 3qel_B 63 KIQGVVFADDTDQEAIAQILDFISAQTLTPILGI 96 (364)
T ss_dssp CEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEecCCCCchHHHHHHHHHHhccCCCEEEe
Confidence 4668776443 333444 888999999999986
No 11
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=90.98 E-value=0.08 Score=32.19 Aligned_cols=32 Identities=3% Similarity=0.056 Sum_probs=28.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+...+.+|+|++
T Consensus 68 ~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~ 99 (389)
T 3o21_A 68 RGVYAIFGFYDQMSMNTLTSFCGALHTSFVTP 99 (389)
T ss_dssp TTCSCEEECCCTTTHHHHHHHHHHHTCCEEEC
T ss_pred cCcEEEEeCCChhHHHHHHHHhccCCCceeec
Confidence 35788999999999999999999999999953
No 12
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=90.76 E-value=0.11 Score=31.61 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=28.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.++..+.+|+|++
T Consensus 85 ~v~aviG~~~S~~~~a~~~~~~~~~ip~is~ 115 (433)
T 4f11_A 85 NHLMVFGGVCPSVTSIIAESLQGWNLVQLSF 115 (433)
T ss_dssp CCSEEEECCSHHHHHHHHHTHHHHTCEEEES
T ss_pred ceEEEECCCcchHHHHHHHHHHhcCceEEEc
Confidence 5779999999999999999999999999985
No 13
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=90.71 E-value=0.1 Score=31.44 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=28.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.+.....+|+|++
T Consensus 67 ~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~ 97 (384)
T 3saj_A 67 GVYAIFGFYERRTVNMLTSFCGALHVCFITP 97 (384)
T ss_dssp TCSCEEECCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CeEEEECCCCHHHHHHHHHHhccCCCCeEec
Confidence 4678999999999999999999999999986
No 14
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=90.02 E-value=0.16 Score=33.49 Aligned_cols=31 Identities=3% Similarity=0.040 Sum_probs=28.6
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.+...+++|+||+
T Consensus 60 ~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~ 90 (823)
T 3kg2_A 60 GVYAIFGFYDKKSVNTITSFCGTLHVSFITP 90 (823)
T ss_dssp TCSEEEECCCTTTHHHHHHHHHHTTCEEEEC
T ss_pred CcEEEEcCCChhHHHHHHHHhhcCCCceeec
Confidence 5789999999999999999999999999985
No 15
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=88.74 E-value=0.23 Score=29.91 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=26.8
Q ss_pred cceEEEeCCCChHHH-HHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTS-IQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s-~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+ ..++.+...+++|+|++
T Consensus 69 ~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~ 101 (393)
T 3om0_A 69 KGVVSVLGPSSSPASASTVSHICGEKEIPHIKV 101 (393)
T ss_dssp GCCSCEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred cCcEEEECCCCchhHHHHHHHHHhccCCCeEec
Confidence 357899999888655 58899999999999986
No 16
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=86.86 E-value=0.36 Score=28.94 Aligned_cols=32 Identities=9% Similarity=0.299 Sum_probs=23.4
Q ss_pred cceEEEeCC-----CChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGA-----ASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~-----~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+ ..+..+..++.+...+.+|+|+|
T Consensus 64 ~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~ 100 (384)
T 3qek_A 64 SQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGL 100 (384)
T ss_dssp GTEEEEEECC--------CCHHHHHHHHTTTCCEEES
T ss_pred cCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEec
Confidence 358899994 34556678889999999999986
No 17
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=74.82 E-value=2.6 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.++....+|.|++
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 101 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINI 101 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCceEEEe
Confidence 46889999988998888888988889998863
No 18
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=70.80 E-value=2.8 Score=24.96 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=26.7
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..++.+.....+|.|+
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 102 (374)
T 3n0x_A 72 DGADIAIGTSSSAAALADLPVAEENKKILIV 102 (374)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCccEEE
Confidence 3577899999999999999999988888875
No 19
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=70.30 E-value=2.5 Score=25.08 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=27.1
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.++....+|+|++
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 103 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFIT 103 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCceEEEc
Confidence 35778999888999989999998889998864
No 20
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=69.53 E-value=5.1 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=27.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.......+|+|++
T Consensus 74 ~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~ 105 (353)
T 4gnr_A 74 SKVSAVVGPATSGATAAAVANATKAGVPLISP 105 (353)
T ss_dssp SCCSEEECCCSHHHHHHHHHHHHHTTCCEEES
T ss_pred CCceEEeccccCcccceehhhhhccCcceEee
Confidence 45678899999999999999999999999874
No 21
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=68.94 E-value=2 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..++.+.....+|.|+.
T Consensus 71 d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~ 102 (371)
T 4f06_A 71 EKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVM 102 (371)
T ss_dssp SCCSEEEECCSHHHHHHHGGGHHHHTCCEEES
T ss_pred CCCEEEEecccccchHHHHHHHHhhcCCcccc
Confidence 45778999999999999999999899998863
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=66.56 E-value=3.8 Score=24.04 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
..+.+++|+..+..+..+..++....+|.|++
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~ 102 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQAKVPEIVM 102 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEES
T ss_pred CCcEEEECCCccHHHHHHHHHHHhCCceEEec
Confidence 45778999888888888888888889998863
No 23
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=66.39 E-value=3.6 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++.++....+|.|++
T Consensus 73 ~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 103 (387)
T 3i45_A 73 GVHALAGTFLSHVGLAVSDFARQRKVLFMAS 103 (387)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCEEEECCcchHHHHHHHHHHHHcCceEEec
Confidence 5678999888988888888888889998863
No 24
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=65.95 E-value=8.7 Score=22.53 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=25.9
Q ss_pred ceEEEeCCCChHHHHHHHH--HhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVAN--LLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~--ll~~~~iPqIS 60 (61)
.+.+++|+..+..+..+.. .+....+|.|+
T Consensus 73 ~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~ 104 (364)
T 3lop_A 73 NPVALLTVVGTANVEALMREGVLAEARLPLVG 104 (364)
T ss_dssp CEEEEECCCCHHHHHHHHHTTHHHHHTCCEES
T ss_pred CcEEEEecCCCHHHHhhCchhhHHhcCCcEEE
Confidence 6889999888888888888 88888899876
No 25
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=63.53 E-value=5.9 Score=23.26 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=26.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..++..+....+|.|+.
T Consensus 81 ~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~ 111 (366)
T 3td9_A 81 KVLAIIGEVASAHSLAIAPIAEENKVPMVTP 111 (366)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHTTCCEEES
T ss_pred CeEEEEccCCchhHHHHHHHHHhCCCeEEec
Confidence 4778999888888888888898899998863
No 26
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=61.73 E-value=8.4 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
++++.++|++.+.-+.....+-..+.+++||
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 5678889988887776666677777888775
No 27
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=61.14 E-value=9.7 Score=22.19 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.2
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+...+....+|.|+
T Consensus 71 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~ 101 (358)
T 3hut_A 71 PRVVGVLGDFSSTVSMAAGSIYGKEGMPQLS 101 (358)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHHCCCcEEe
Confidence 4688999988888777778888888888876
No 28
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=58.68 E-value=2.4 Score=25.62 Aligned_cols=31 Identities=3% Similarity=-0.039 Sum_probs=26.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..++.+.....+|+|+
T Consensus 82 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 112 (419)
T 3h5l_A 82 DNASALIAGYNLENGTALHDVAADAGVIAMH 112 (419)
T ss_dssp TCCSEEECSCCSSCSCHHHHHHHHHTCEEEE
T ss_pred cCCeEEEccccchhHHHhHHHHHHcCCeEEE
Confidence 4577899998888888888888888999886
No 29
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=58.25 E-value=8.9 Score=22.32 Aligned_cols=31 Identities=26% Similarity=0.178 Sum_probs=25.5
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+...+....+|.|+
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 98 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAENGILEIT 98 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHhCCCeEEe
Confidence 3567899988888888888888888999876
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=58.15 E-value=6.7 Score=23.01 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=25.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..+...+....+|.|++
T Consensus 82 ~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~ 112 (375)
T 4evq_A 82 KADVLIGTVHSGVAMAMVKIAREDGIPTIVP 112 (375)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCCCEEES
T ss_pred CceEEEcCCccHHHHHHHHHHHHcCceEEec
Confidence 5778999888888888888888888998853
No 31
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=56.82 E-value=12 Score=21.87 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+.....+...+....+|.|+
T Consensus 89 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 118 (386)
T 3sg0_A 89 KVDVLIGSSLTPVSLPLIDIAAEAKTPLMT 118 (386)
T ss_dssp CCSEEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEECCCCchhHHHHHHHHHhcCCeEEE
Confidence 577899988888888888888888999876
No 32
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=56.05 E-value=10 Score=21.90 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=23.5
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceeeC
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqISY 61 (61)
.+.+++|+..+..+..+...+....+|.|++
T Consensus 69 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~ 99 (346)
T 1usg_A 69 GIKYVIGHLCSSSTQPASDIYEDEGILMISP 99 (346)
T ss_dssp TCCEEECCSSHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCEEEcCCCcHHHHHHHHHHHHCCCeEEee
Confidence 5678899877777777777777778888763
No 33
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.02 E-value=14 Score=20.74 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=21.4
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.++|++.+.-......+-..+.+|+||
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 35678888777776666777778888876
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=48.13 E-value=11 Score=21.74 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=24.3
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++|+..+..+..+...+....+|.|+
T Consensus 69 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 98 (362)
T 3snr_A 69 KADVIMGSSVTPPSVAISNVANEAQIPHIA 98 (362)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEcCCCcHHHHHHHHHHHHcCccEEE
Confidence 577899988888877788888888888876
No 35
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=47.34 E-value=16 Score=21.80 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=24.9
Q ss_pred cceEEEeCCCChHHHHHHHHHh-ccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLL-RLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll-~~~~iPqIS 60 (61)
..+..++|+..+..+..++... ....+|+|+
T Consensus 55 ~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~ 86 (325)
T 2h4a_A 55 AGIKTLVGPLLKQNLDVILADPAQIQGMDVLA 86 (325)
T ss_dssp TTCCEEECCCSHHHHHHHHHCGGGGTTCEEEE
T ss_pred CCCCEEEeeCCHHHHHHHHhhhhccCCCcEEE
Confidence 3577999999999888888776 567888875
No 36
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=43.95 E-value=14 Score=22.02 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.3
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++| ..+..+..+...+....+|.|+
T Consensus 75 ~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~ 104 (391)
T 3eaf_A 75 YGVIAIIG-WGTADTEKLSDQVDTDKITYIS 104 (391)
T ss_dssp TCCSEEEE-CCHHHHHHHHHHHHHHTCEEEE
T ss_pred cCcEEEEE-cCcHHHHHHHHHHhhcCCeEEe
Confidence 45678888 6788888888888888999886
No 37
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=41.43 E-value=24 Score=19.97 Aligned_cols=31 Identities=23% Similarity=0.014 Sum_probs=19.4
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
+..+.++|++.+.-+.....+...+.++.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5577888887776665544454555555553
No 38
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=39.81 E-value=27 Score=20.67 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=23.0
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
..+.+++|+..+..+..+...+....+|.|+
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~ 104 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERADALLCY 104 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEECCCchHHHHHHHHHHHhcCceEEE
Confidence 4577888877776666677777777888875
No 39
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=28.17 E-value=52 Score=19.01 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=19.3
Q ss_pred eEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 32 ISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
-.+++|++.+.-+.....+-..+.++.|+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46888887776665555555656667664
No 40
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=27.42 E-value=68 Score=17.35 Aligned_cols=28 Identities=4% Similarity=0.029 Sum_probs=16.2
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCce
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQ 58 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPq 58 (61)
..++++|+..+.-+.....+...+.+|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4678899777666644443434444443
No 41
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=25.54 E-value=58 Score=18.53 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=14.8
Q ss_pred ceEEEeCCCChHHHHHHHH
Q psy9921 31 VISGVVGAASSVTSIQVAN 49 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ 49 (61)
+.+|++|++++..+...-+
T Consensus 3 k~iGilGGmg~~at~~~~~ 21 (231)
T 3ojc_A 3 KILGLIGGMSWESTIPYYR 21 (231)
T ss_dssp CCEEEEECTTHHHHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHH
Confidence 4679999999998875443
No 42
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=24.60 E-value=32 Score=20.32 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=22.8
Q ss_pred ceEEEeCCCChHHHHHHHHHhccCCCceee
Q psy9921 31 VISGVVGAASSVTSIQVANLLRLFKIPQAS 60 (61)
Q Consensus 31 ~~~~~ig~~~s~~s~~~a~ll~~~~iPqIS 60 (61)
.+.+++| ..+..+..+...+....+|.|+
T Consensus 75 ~V~~iig-~~s~~~~~~~~~~~~~~iP~i~ 103 (392)
T 3lkb_A 75 KIPVFLS-YATGANLQLKPLIQELRIPTIP 103 (392)
T ss_dssp CCSCEEE-CCHHHHHHHHHHHHHHTCCEEE
T ss_pred CcEEEEe-CCcHHHHHHHHHHHhCCceEEe
Confidence 5678888 6777777778888888888875
No 43
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=22.36 E-value=71 Score=17.84 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=15.0
Q ss_pred eEEEeCCCChHHHHHHHHH
Q psy9921 32 ISGVVGAASSVTSIQVANL 50 (61)
Q Consensus 32 ~~~~ig~~~s~~s~~~a~l 50 (61)
.+|++|++++..+...-..
T Consensus 3 ~iGiiGGmgp~at~~~~~~ 21 (226)
T 2zsk_A 3 KIGIIGGTTPESTLYYYKK 21 (226)
T ss_dssp CEEEEECSSHHHHHHHHHH
T ss_pred eEEEecccCHHHHHHHHHH
Confidence 5799999999988865544
No 44
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=21.83 E-value=1e+02 Score=17.40 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=18.7
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
...+|++|+..+.-| +++.+|....+|.|
T Consensus 9 ~~~iglTGgigsGKS-tv~~~l~~~g~~vi 37 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKT-TVADLFAARGASLV 37 (210)
T ss_dssp CCEEEEECCTTSCHH-HHHHHHHHTTCEEE
T ss_pred eeEEEEECCCCCCHH-HHHHHHHHCCCcEE
Confidence 357899998777665 45555555666654
No 45
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.78 E-value=1e+02 Score=15.96 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=10.6
Q ss_pred cceEEEeCCCChHHHHH
Q psy9921 30 KVISGVVGAASSVTSIQ 46 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~ 46 (61)
+..+.+.|.+.+.-+..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34677888766655543
No 46
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=20.19 E-value=1.1e+02 Score=16.18 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=17.6
Q ss_pred cceEEEeCCCChHHHHHHHHHhccCCCcee
Q psy9921 30 KVISGVVGAASSVTSIQVANLLRLFKIPQA 59 (61)
Q Consensus 30 ~~~~~~ig~~~s~~s~~~a~ll~~~~iPqI 59 (61)
...+.+.|++.+.-+.....+...+..+.|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i 44 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 44 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence 457888887776666544444444444443
Done!