RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9921
(61 letters)
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 54.4 bits (131), Expect = 6e-11
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Query: 12 SISNIDDTEYHCN------KTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
S++ +D+ EY C + I +I+GV+G + S SIQVANLLRLF+IPQ S+
Sbjct: 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 147
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 52.1 bits (125), Expect = 4e-10
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 12 SISNIDDTEYHCNK------TQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
S++ +D+ EY C I +I+GV+G + S SIQVANLLRLF+IPQ S+
Sbjct: 91 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISY 146
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 49.9 bits (119), Expect = 2e-09
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 8 SYLRSISNIDDTEYHCNKTQI-----RKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
++++++ D ++ C + + + GV+GA+ S SI VAN+LRLF+IPQ S+
Sbjct: 89 TFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISY 147
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 47.9 bits (114), Expect = 1e-08
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 21 YHC-NKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
+ +K I+GV+G SS +IQV NLL+LF IPQ ++
Sbjct: 117 GQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAY 158
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 38.3 bits (89), Expect = 3e-05
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 33 SGVVGAASSVTSIQVANLLRLFKIPQASF 61
V G + +A L+ + + Q SF
Sbjct: 87 LMVFGGVCPSVTSIIAESLQGWNLVQLSF 115
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 34.7 bits (79), Expect = 7e-04
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 31 VISGVVGAASSVTSIQVANLLRLFKIPQASF 61
++S +T ++ ++IP
Sbjct: 70 LVSHPPAPTDHLTPTPISYTAGFYRIPVIGL 100
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 34.0 bits (77), Expect = 0.001
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 32 ISGVVGAASSVTSIQVANLLRLFKIPQASF 61
+ +G ++ V +++P +
Sbjct: 78 PAVFLGPGCVYSAAPVGRFTAHWRVPLLTA 107
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 32.4 bits (73), Expect = 0.004
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 29 RKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
++G + VA L + +P S
Sbjct: 82 GAKPDLILGPVCEYAAAPVARLASHWDLPMLSA 114
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 32.0 bits (72), Expect = 0.006
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 32 ISGVVGAASSVTSIQVANLLRLFKIPQASF 61
++ + G + S ++ V ++ +P
Sbjct: 72 VAAIFGPSHSSSANAVQSICNALGVPHIQT 101
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell
CELL membrane, endoplasmic reticulum, glycoprotein, ION
TRA ionic channel; HET: NAG BMA; 1.75A {Rattus
norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A
3n6v_A
Length = 376
Score = 29.8 bits (66), Expect = 0.028
Identities = 2/35 (5%), Positives = 10/35 (28%)
Query: 27 QIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
Q + + + G + + + + +
Sbjct: 56 QFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP 90
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 29.0 bits (64), Expect = 0.064
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 27 QIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
Q K + + G T + + + +
Sbjct: 63 QFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITP 97
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 27.9 bits (61), Expect = 0.14
Identities = 2/41 (4%), Positives = 12/41 (29%)
Query: 21 YHCNKTQIRKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
+ +Q + + + G ++ + + +
Sbjct: 59 TNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTP 99
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A;
CO-expressed complex, hetero-tetramer, structural
genomics, PSI-2; 2.59A {Bacillus subtilis}
Length = 241
Score = 25.4 bits (56), Expect = 1.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 27 QIRKVISGVVGAASSVTSIQVANLLRLFKIPQ 58
QI+K+I+ VG ++ L + +PQ
Sbjct: 72 QIKKMIASYVGENKIFERQFLSGELEVELVPQ 103
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.90A {Escherichia coli}
SCOP: c.124.1.2
Length = 220
Score = 24.5 bits (54), Expect = 2.1
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 27 QIRKVISGVVGAASSVTSIQVANLLRLFKIPQ 58
++RKVI+ +G ++ + + +PQ
Sbjct: 69 RVRKVIASHIGTNPETGRRMISGEMDVVLVPQ 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.386
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 841,110
Number of extensions: 32385
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 15
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)