RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9921
         (61 letters)



>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 25.5 bits (54), Expect = 0.48
 Identities = 3/33 (9%), Positives = 11/33 (33%)

Query: 29  RKVISGVVGAASSVTSIQVANLLRLFKIPQASF 61
               +  +G     ++  V      +++P  + 
Sbjct: 75  EHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTA 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 207,087
Number of extensions: 6342
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)