Query psy9923
Match_columns 315
No_of_seqs 129 out of 1349
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:06:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02343 chap_CCT_epsi T-comp 100.0 8.8E-67 1.9E-71 510.6 33.2 308 1-308 55-362 (532)
2 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.1E-66 4.5E-71 508.3 34.3 307 1-307 51-357 (526)
3 TIGR02339 thermosome_arch ther 100.0 7.9E-66 1.7E-70 503.7 34.2 306 1-308 44-353 (519)
4 cd03343 cpn60 cpn60 chaperonin 100.0 7.2E-65 1.6E-69 497.2 34.2 306 1-308 43-350 (517)
5 TIGR02344 chap_CCT_gamma T-com 100.0 2E-64 4.3E-69 494.5 33.5 306 1-308 44-354 (525)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 4.7E-64 1E-68 490.5 35.4 306 1-308 44-359 (531)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 5.1E-64 1.1E-68 491.5 34.4 306 1-308 36-351 (527)
8 TIGR02342 chap_CCT_delta T-com 100.0 6E-64 1.3E-68 489.7 34.6 305 1-307 37-348 (517)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-63 3.6E-68 487.6 34.6 304 1-308 44-352 (522)
10 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.3E-63 4.9E-68 486.2 34.2 305 1-307 36-347 (515)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1E-62 2.2E-67 481.1 35.4 302 1-307 41-346 (517)
12 TIGR02340 chap_CCT_alpha T-com 100.0 2.4E-62 5.1E-67 480.4 35.0 306 1-308 40-355 (536)
13 PTZ00212 T-complex protein 1 s 100.0 5.3E-62 1.2E-66 477.3 34.9 303 1-308 50-359 (533)
14 TIGR02345 chap_CCT_eta T-compl 100.0 3.4E-62 7.3E-67 477.9 33.2 303 1-307 46-352 (522)
15 TIGR02346 chap_CCT_theta T-com 100.0 7.3E-62 1.6E-66 475.8 34.7 303 1-307 46-349 (531)
16 TIGR02341 chap_CCT_beta T-comp 100.0 4.4E-61 9.5E-66 469.1 35.1 302 1-307 42-347 (519)
17 KOG0361|consensus 100.0 7E-63 1.5E-67 440.3 20.3 303 1-307 48-355 (543)
18 KOG0358|consensus 100.0 8.9E-62 1.9E-66 432.5 17.9 305 1-307 54-365 (534)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.3E-59 2.7E-64 455.6 30.4 277 1-308 40-316 (484)
20 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 8.1E-58 1.8E-62 445.1 30.7 300 1-308 17-316 (485)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 6.5E-58 1.4E-62 443.5 27.4 264 1-307 44-312 (480)
22 COG0459 GroL Chaperonin GroEL 100.0 4.2E-56 9.1E-61 429.8 28.3 299 1-307 39-344 (524)
23 cd00309 chaperonin_type_I_II c 100.0 1.2E-55 2.7E-60 427.1 29.3 264 1-308 36-299 (464)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.3E-55 2.8E-60 426.6 28.9 266 1-307 36-301 (472)
25 KOG0363|consensus 100.0 4.2E-56 9.1E-61 394.6 20.9 297 6-307 53-351 (527)
26 KOG0360|consensus 100.0 2.1E-56 4.5E-61 407.6 18.4 307 1-308 47-362 (545)
27 KOG0362|consensus 100.0 5.9E-53 1.3E-57 387.2 26.4 299 1-307 54-352 (537)
28 KOG0364|consensus 100.0 2.9E-54 6.3E-59 390.3 17.0 307 1-309 47-355 (527)
29 PRK12849 groEL chaperonin GroE 100.0 4.1E-51 8.9E-56 399.3 28.3 261 1-304 38-326 (542)
30 PTZ00114 Heat shock protein 60 100.0 4.6E-51 1E-55 400.7 28.6 261 1-304 50-339 (555)
31 PRK00013 groEL chaperonin GroE 100.0 7.2E-51 1.6E-55 397.6 28.6 262 1-304 38-326 (542)
32 cd03344 GroEL GroEL_like type 100.0 1.5E-50 3.2E-55 394.3 29.3 261 1-304 36-324 (520)
33 KOG0359|consensus 100.0 2.6E-52 5.6E-57 377.1 14.9 301 1-307 45-349 (520)
34 PRK12851 groEL chaperonin GroE 100.0 2.3E-50 5.1E-55 394.3 28.9 262 1-304 39-327 (541)
35 TIGR02348 GroEL chaperonin Gro 100.0 2.6E-50 5.7E-55 393.2 27.9 261 1-304 37-325 (524)
36 PRK12850 groEL chaperonin GroE 100.0 6.4E-50 1.4E-54 391.4 28.9 262 1-304 39-327 (544)
37 PLN03167 Chaperonin-60 beta su 100.0 2.9E-49 6.3E-54 389.0 28.4 263 1-307 94-389 (600)
38 PRK12852 groEL chaperonin GroE 100.0 5E-49 1.1E-53 385.9 27.4 262 1-305 39-328 (545)
39 CHL00093 groEL chaperonin GroE 100.0 5E-49 1.1E-53 384.6 25.4 263 1-304 38-327 (529)
40 PRK14104 chaperonin GroEL; Pro 100.0 6.4E-48 1.4E-52 377.2 27.3 259 1-302 39-325 (546)
41 cd03334 Fab1_TCP TCP-1 like do 100.0 5.2E-35 1.1E-39 261.9 19.6 185 116-307 13-201 (261)
42 cd03333 chaperonin_like chaper 100.0 5.1E-31 1.1E-35 229.5 17.0 161 104-307 2-162 (209)
43 KOG0356|consensus 100.0 5.1E-31 1.1E-35 246.1 17.5 266 3-304 54-341 (550)
44 KOG0357|consensus 99.9 1.3E-27 2.9E-32 211.0 5.9 170 1-307 56-225 (400)
45 KOG0230|consensus 99.8 5.6E-21 1.2E-25 195.2 12.4 179 120-305 331-512 (1598)
46 COG1433 Uncharacterized conser 83.6 4.9 0.00011 31.7 6.5 53 228-281 56-108 (121)
47 PF02579 Nitro_FeMo-Co: Dinitr 82.9 3.8 8.3E-05 30.0 5.5 38 228-266 44-81 (94)
48 cd00851 MTH1175 This uncharact 80.3 3.9 8.5E-05 30.5 4.9 44 228-273 54-97 (103)
49 cd00562 NifX_NifB This CD repr 72.1 8.8 0.00019 28.5 4.8 39 228-267 52-90 (102)
50 TIGR02663 nifX nitrogen fixati 67.6 17 0.00036 28.3 5.6 56 228-286 56-115 (119)
51 PRK13600 putative ribosomal pr 58.7 53 0.0011 24.1 6.4 52 227-281 19-74 (84)
52 PRK07283 hypothetical protein; 58.7 48 0.001 24.8 6.5 50 228-280 25-78 (98)
53 cd00852 NifB NifB belongs to a 57.1 27 0.00058 26.4 4.9 31 236-267 64-94 (106)
54 cd00853 NifX NifX belongs to a 54.4 39 0.00084 25.3 5.4 31 236-267 60-90 (102)
55 cd04743 NPD_PKS 2-Nitropropane 51.9 48 0.0011 30.7 6.5 56 228-284 73-128 (320)
56 PRK04175 rpl7ae 50S ribosomal 51.7 64 0.0014 25.3 6.4 51 228-281 37-92 (122)
57 TIGR03677 rpl7ae 50S ribosomal 50.4 67 0.0014 25.0 6.3 50 228-280 33-87 (117)
58 TIGR03659 IsdE heme ABC transp 50.4 48 0.001 29.8 6.3 54 229-282 83-142 (289)
59 cd01144 BtuF Cobalamin binding 49.3 57 0.0012 28.3 6.5 53 229-281 49-108 (245)
60 PRK07714 hypothetical protein; 48.9 87 0.0019 23.5 6.6 52 228-282 25-80 (100)
61 cd01143 YvrC Periplasmic bindi 48.7 54 0.0012 27.1 6.0 53 229-281 52-111 (195)
62 PRK13601 putative L7Ae-like ri 48.6 89 0.0019 22.7 6.2 52 228-282 15-70 (82)
63 TIGR03151 enACPred_II putative 48.3 70 0.0015 29.4 7.1 57 228-284 78-134 (307)
64 PRK09534 btuF corrinoid ABC tr 46.5 55 0.0012 30.7 6.2 53 229-281 111-170 (359)
65 PRK13602 putative ribosomal pr 46.0 1E+02 0.0022 22.2 6.3 53 227-282 17-73 (82)
66 PTZ00106 60S ribosomal protein 45.9 85 0.0018 24.1 6.1 51 228-281 32-87 (108)
67 PRK06683 hypothetical protein; 45.1 1E+02 0.0023 22.3 6.2 52 228-282 18-73 (82)
68 PF12846 AAA_10: AAA-like doma 41.8 64 0.0014 28.6 5.8 57 226-282 242-303 (304)
69 PRK05583 ribosomal protein L7A 39.9 1.4E+02 0.003 22.7 6.4 53 228-283 24-80 (104)
70 TIGR00129 fdhD_narQ formate de 39.4 41 0.0009 29.7 4.0 42 228-269 183-224 (237)
71 cd03308 CmuA_CmuC_like CmuA_Cm 38.2 2.1E+02 0.0046 27.0 8.8 76 210-288 244-322 (378)
72 PRK01018 50S ribosomal protein 37.9 1.6E+02 0.0035 22.0 6.5 51 228-281 23-78 (99)
73 PRK06552 keto-hydroxyglutarate 37.7 2.7E+02 0.0058 24.1 8.7 55 228-284 79-134 (213)
74 PF00809 Pterin_bind: Pterin b 37.3 73 0.0016 27.4 5.1 65 220-284 53-121 (210)
75 PRK04247 hypothetical protein; 36.5 87 0.0019 27.7 5.4 29 236-264 204-232 (238)
76 PRK03298 hypothetical protein; 36.2 88 0.0019 27.3 5.3 43 227-270 166-212 (224)
77 PF01248 Ribosomal_L7Ae: Ribos 36.0 60 0.0013 23.8 3.8 52 227-281 21-77 (95)
78 cd01138 FeuA Periplasmic bindi 35.8 92 0.002 27.0 5.7 52 229-281 58-113 (248)
79 PRK00724 formate dehydrogenase 35.2 51 0.0011 29.6 3.9 43 227-269 211-253 (263)
80 PRK03379 vitamin B12-transport 33.4 1.3E+02 0.0028 26.6 6.3 53 229-281 64-123 (260)
81 PF02603 Hpr_kinase_N: HPr Ser 32.9 35 0.00076 26.9 2.2 51 214-264 58-110 (127)
82 PF02796 HTH_7: Helix-turn-hel 32.8 53 0.0011 20.6 2.6 33 58-90 11-43 (45)
83 cd03309 CmuC_like CmuC_like. P 32.7 2.6E+02 0.0056 25.9 8.2 74 211-287 188-265 (321)
84 COG4359 Uncharacterized conser 32.4 83 0.0018 26.9 4.4 81 225-311 77-161 (220)
85 COG1121 ZnuC ABC-type Mn/Zn tr 32.4 55 0.0012 29.3 3.6 79 185-283 156-240 (254)
86 TIGR01496 DHPS dihydropteroate 31.6 1.9E+02 0.0042 25.7 7.0 63 221-284 58-123 (257)
87 PF03060 NMO: Nitronate monoox 31.4 1.3E+02 0.0029 27.8 6.2 58 226-283 102-160 (330)
88 PF13380 CoA_binding_2: CoA bi 31.2 1E+02 0.0022 23.7 4.6 38 227-264 69-107 (116)
89 PRK05718 keto-hydroxyglutarate 31.1 1.9E+02 0.0042 25.0 6.7 55 229-285 79-134 (212)
90 PF12554 MOZART1: Mitotic-spin 30.5 76 0.0017 20.6 3.0 21 56-76 22-42 (48)
91 PF05822 UMPH-1: Pyrimidine 5' 29.7 33 0.00071 30.6 1.7 35 227-261 96-130 (246)
92 PRK10824 glutaredoxin-4; Provi 29.3 2.7E+02 0.0059 21.6 6.6 59 227-286 5-74 (115)
93 PF00725 3HCDH: 3-hydroxyacyl- 28.5 1.3E+02 0.0029 21.9 4.7 31 53-83 7-38 (97)
94 COG1358 RPL8A Ribosomal protei 28.5 2.6E+02 0.0057 21.7 6.4 52 227-281 33-89 (116)
95 cd03465 URO-D_like The URO-D _ 27.8 3.3E+02 0.0072 24.7 8.2 74 211-287 198-273 (330)
96 COG1526 FdhD Uncharacterized p 27.7 77 0.0017 28.6 3.7 42 228-269 212-253 (266)
97 cd01149 HutB Hemin binding pro 27.2 1.9E+02 0.0041 24.8 6.2 52 230-281 51-110 (235)
98 cd00717 URO-D Uroporphyrinogen 27.2 3.1E+02 0.0068 25.1 7.9 73 211-287 205-281 (335)
99 cd01139 TroA_f Periplasmic bin 27.1 1.6E+02 0.0035 27.0 6.0 52 230-281 84-148 (342)
100 PRK11613 folP dihydropteroate 26.5 3E+02 0.0066 25.0 7.4 62 221-284 73-138 (282)
101 cd03213 ABCG_EPDR ABCG transpo 26.4 83 0.0018 26.4 3.6 52 185-255 128-179 (194)
102 cd01141 TroA_d Periplasmic bin 26.4 97 0.0021 25.5 4.0 51 229-279 61-119 (186)
103 PHA02591 hypothetical protein; 26.4 1E+02 0.0022 22.2 3.3 35 57-91 48-82 (83)
104 PF13443 HTH_26: Cro/C1-type H 25.8 1E+02 0.0022 20.4 3.3 35 246-283 21-55 (63)
105 KOG0991|consensus 25.7 2.1E+02 0.0046 25.6 5.9 54 16-83 228-283 (333)
106 cd01146 FhuD Fe3+-siderophore 25.6 1.9E+02 0.0042 25.1 6.0 52 230-281 58-115 (256)
107 cd00739 DHPS DHPS subgroup of 25.6 3.2E+02 0.0068 24.4 7.3 64 220-284 58-125 (257)
108 PF02634 FdhD-NarQ: FdhD/NarQ 25.3 64 0.0014 28.4 2.7 41 228-268 183-223 (236)
109 PF00702 Hydrolase: haloacid d 24.8 2E+02 0.0043 23.9 5.7 54 227-280 133-193 (215)
110 PF07905 PucR: Purine cataboli 24.7 2.7E+02 0.0059 21.5 6.0 41 226-266 61-106 (123)
111 PF07611 DUF1574: Protein of u 24.5 2.3E+02 0.0049 26.7 6.3 59 222-283 250-308 (345)
112 PF04471 Mrr_cat: Restriction 24.3 1.1E+02 0.0023 22.7 3.6 37 227-263 67-106 (115)
113 PRK06842 fumarate hydratase; P 24.3 2.7E+02 0.0059 23.6 6.2 71 227-304 85-155 (185)
114 COG1137 YhbG ABC-type (unclass 24.3 1.2E+02 0.0026 26.5 4.0 44 186-248 157-200 (243)
115 TIGR01544 HAD-SF-IE haloacid d 23.9 1.4E+02 0.003 27.1 4.7 35 226-260 126-160 (277)
116 PRK13753 dihydropteroate synth 23.9 3.3E+02 0.0071 24.8 7.0 62 221-284 60-124 (279)
117 cd03232 ABC_PDR_domain2 The pl 23.8 93 0.002 26.0 3.4 52 185-255 125-176 (192)
118 PF01497 Peripla_BP_2: Peripla 23.6 2.3E+02 0.005 24.0 6.0 51 231-281 54-112 (238)
119 PF01136 Peptidase_U32: Peptid 23.5 4.4E+02 0.0096 22.6 7.8 33 246-278 47-82 (233)
120 PRK07114 keto-hydroxyglutarate 23.2 3.5E+02 0.0076 23.6 6.9 53 230-284 84-137 (222)
121 PF02836 Glyco_hydro_2_C: Glyc 23.2 1.4E+02 0.003 27.0 4.6 39 227-265 39-78 (298)
122 cd01140 FatB Siderophore bindi 22.9 2E+02 0.0043 25.2 5.6 52 230-281 65-123 (270)
123 PRK14502 bifunctional mannosyl 22.6 1.7E+02 0.0036 30.3 5.3 80 164-260 393-472 (694)
124 COG1129 MglA ABC-type sugar tr 21.9 1.1E+02 0.0023 30.4 3.7 45 186-249 163-207 (500)
125 TIGR01464 hemE uroporphyrinoge 21.8 4.6E+02 0.01 24.1 8.0 73 211-287 208-284 (338)
126 TIGR01290 nifB nitrogenase cof 21.7 2E+02 0.0044 27.9 5.6 44 226-272 389-432 (442)
127 cd00636 TroA-like Helical back 21.4 1.5E+02 0.0033 22.3 4.1 34 231-264 55-88 (148)
128 TIGR03859 PQQ_PqqD coenzyme PQ 21.3 1.6E+02 0.0035 21.0 3.8 40 1-40 19-58 (81)
129 TIGR01491 HAD-SF-IB-PSPlk HAD- 21.1 1.7E+02 0.0037 24.1 4.5 37 226-262 85-121 (201)
130 cd01427 HAD_like Haloacid deha 20.8 1.9E+02 0.0041 21.4 4.4 34 227-260 30-63 (139)
131 TIGR01488 HAD-SF-IB Haloacid D 20.7 2E+02 0.0043 23.2 4.8 36 226-261 78-113 (177)
132 PF01208 URO-D: Uroporphyrinog 20.4 2.4E+02 0.0051 26.0 5.7 68 211-281 210-278 (343)
No 1
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-67 Score=510.57 Aligned_cols=308 Identities=72% Similarity=1.161 Sum_probs=294.6
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++|||+||+++.+|+++|+||+.|++||+.
T Consensus 55 mI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~ 134 (532)
T TIGR02343 55 MLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEV 134 (532)
T ss_pred EEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++++++.+..+++.|.++|+|++++|+.+.+.+.|++++++|+..+.+.....+|+++|+|++++|+++
T Consensus 135 a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~ 214 (532)
T TIGR02343 135 AARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSL 214 (532)
T ss_pred HHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCc
Confidence 99999999999987765554568899999999999999999999999999999998865333468889999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
+||++++|++|++++.+++||++++||||++++++|++++++.+.++.+++++++.++.+.|+++++++++++++.|++|
T Consensus 215 ~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 215 EDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred ccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+|+++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 295 vi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~ 362 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT 362 (532)
T ss_pred EEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 2
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-66 Score=508.30 Aligned_cols=307 Identities=76% Similarity=1.190 Sum_probs=293.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 51 mi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~ 130 (526)
T cd03339 51 ILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQ 130 (526)
T ss_pred EEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++++++.+..+++.|.++|+|++++|+.+.+.+.|++++++|+..+.+.....+|++.|+|++++||++
T Consensus 131 a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~ 210 (526)
T cd03339 131 ACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRL 210 (526)
T ss_pred HHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCH
Confidence 99999999999988776555578899999999999999999999999999999998875333456778999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
+||++++|++|++++.+++||++.+||||++++++|++++++.++++.++++++++.+.++|+++++++++++.+.|++|
T Consensus 211 ~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 211 EDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred HHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|+++++|++.|++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|+++++|.
T Consensus 291 vi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~ 357 (526)
T cd03339 291 VICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGT 357 (526)
T ss_pred EEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999885
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.9e-66 Score=503.74 Aligned_cols=306 Identities=42% Similarity=0.651 Sum_probs=291.6
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++||+++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 44 ~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~ 123 (519)
T TIGR02339 44 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRK 123 (519)
T ss_pred eeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHhccc---ccCCCCccceEEEecc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII-NKCHRQMAEIAVNAVMAVADL---EKRDVNFELIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~-~~~~~~ls~l~~~a~~~v~~~---~~~~~~~~~I~i~~~~ 156 (315)
|++.++++|++++++++ ..+++.|.++|+|+++||+. +.+.+.|++++++|+..+++. +...+|+++|+|++++
T Consensus 124 a~~~~~~~L~~~s~~v~--~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~ 201 (519)
T TIGR02339 124 AAEKALEIIDEIATKIS--PEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKT 201 (519)
T ss_pred HHHHHHHHHHHhccccC--cccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEcc
Confidence 99999999999976653 34678999999999999999 789999999999999999852 1224788899999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
|++++||++++|++|++++.+++||++++||||++++++|++++++.++++.+++++++.++.++|++++++++++|++.
T Consensus 202 Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~ 281 (519)
T TIGR02339 202 GGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADA 281 (519)
T ss_pred CcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|++||+++++|++.++++|.++||++++++++++|+|||++|||++++++++++++++|+|++|+++++|.+
T Consensus 282 g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~ 353 (519)
T TIGR02339 282 GANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDD 353 (519)
T ss_pred CCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864
No 4
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.2e-65 Score=497.23 Aligned_cols=306 Identities=42% Similarity=0.667 Sum_probs=292.1
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++|++++.+++++|+||..|++||++
T Consensus 43 ~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~ 122 (517)
T cd03343 43 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRL 122 (517)
T ss_pred eeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccccc--CCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK--RDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~--~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++ ..+++.+.++|+|+++||+.+.+.+.|++++++|+..+++.+. ..+|+++|+|.+++|+
T Consensus 123 a~~~~~~~L~~~s~~v~--~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Gg 200 (517)
T cd03343 123 AAEKALELLDEIAIKVD--PDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGG 200 (517)
T ss_pred HHHHHHHHHHHhhcccC--CCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCc
Confidence 99999999999976653 2368899999999999999999999999999999999986321 2468888999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
+++||++++|++|++++.+++||+.++||||++++++|++++++.++++.+++++++..+.++|+++++++++++.+.|+
T Consensus 201 s~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~ 280 (517)
T cd03343 201 SVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGA 280 (517)
T ss_pred CHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
+||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 281 ~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~ 350 (517)
T cd03343 281 NVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDD 350 (517)
T ss_pred CEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998853
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-64 Score=494.48 Aligned_cols=306 Identities=33% Similarity=0.556 Sum_probs=289.6
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 44 ~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~ 123 (525)
T TIGR02344 44 MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKK 123 (525)
T ss_pred eEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc---cCCCCcc-ceEEEecc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE---KRDVNFE-LIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~---~~~~~~~-~I~i~~~~ 156 (315)
|++.++++|+++++++ +..+.+.+.++|+|++++|+.++|.+.|++++++|+..+++.. ...+|++ +|+|++++
T Consensus 124 a~~~~~~~L~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~ 201 (525)
T TIGR02344 124 ALDDALSVLEEISIPV--DVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIP 201 (525)
T ss_pred HHHHHHHHHHHhcccc--CCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEec
Confidence 9999999999986654 4346788999999999999999999999999999999998642 1245554 49999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
||+++||++++|++|++++.++.||++++||||+++++||++++++.++++.++++++++.+.++|++++++++++|.+.
T Consensus 202 Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~ 281 (525)
T TIGR02344 202 GGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAV 281 (525)
T ss_pred CCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~ 308 (315)
|++||+++++|++.++++|.++||.+++++++++|+|||++|||++++++++++++++|+ |+.|+++++|.+
T Consensus 282 ~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~ 354 (525)
T TIGR02344 282 KPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDE 354 (525)
T ss_pred CCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCe
Confidence 999999999999999999999999999999999999999999999999999999999999 999999998754
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.7e-64 Score=490.49 Aligned_cols=306 Identities=29% Similarity=0.444 Sum_probs=289.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||||+++|||+||+++.+|+++|+||+.|++||+.
T Consensus 44 mi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~ 123 (531)
T TIGR02347 44 MLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEI 123 (531)
T ss_pred EEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+++ +..+++.|.++|+|+++||+.+.+.+.|++++++|+..+++.+ ..+|++.|++.++.|++.
T Consensus 124 a~~~~~~~L~~~~~~~~-~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~-~~i~~~~I~i~k~~g~s~ 201 (531)
T TIGR02347 124 ARGELLEFLDKFKIKTE-DEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDG-EQIDLFMVEIMEMKHKSA 201 (531)
T ss_pred HHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcC-CCCChhHeEEEEecCCCc
Confidence 99999999999975442 1346889999999999999999999999999999999998632 247788899999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG--- 237 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~--- 237 (315)
.||++++|++|++++.+++||++++||||++++++|++.+++....+.+++++++..+.+.|+++++.++++|.+.+
T Consensus 202 ~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~ 281 (531)
T TIGR02347 202 TDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKV 281 (531)
T ss_pred cccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ----Cc---EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 238 ----AT---LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 238 ----~~---lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
++ +|+|+++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|++|+++.+|.+
T Consensus 282 ~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~ 359 (531)
T TIGR02347 282 CGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEE 359 (531)
T ss_pred cccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCe
Confidence 25 999999999999999999999999999999999999999999999999999999999999999999863
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.1e-64 Score=491.52 Aligned_cols=306 Identities=33% Similarity=0.478 Sum_probs=287.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~ 115 (527)
T cd03335 36 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRL 115 (527)
T ss_pred EEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc-c--cCCCCccceEEEecc
Q psy9923 81 AAQCAVKHLET-IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL-E--KRDVNFELIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~-~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~-~--~~~~~~~~I~i~~~~ 156 (315)
|++.++++|++ +++++ +..+++.|.++|+|+++||+.+.+.+.|++++++|+..++.. . ...+|+++|+|+++.
T Consensus 116 a~~~~~~~L~~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~ 193 (527)
T cd03335 116 ACKEAVKYIKEHLSISV--DNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAH 193 (527)
T ss_pred HHHHHHHHHHHhhccCC--CccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEec
Confidence 99999999996 75554 334688899999999999999988999999999999999631 1 123788899999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
|+++++|++++|++|++++.+++||+.++||||++++++|++.+++.++++.++++++++.+.+.|++++++++++|.+.
T Consensus 194 Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~ 273 (527)
T cd03335 194 GKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAA 273 (527)
T ss_pred CcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCC------CCCCceeeeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL------TSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~ 308 (315)
|++||+++++|++.+++||.++||++++++++++|+|||++|||+++++++++ +++++|+|++|+++++|.+
T Consensus 274 g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~ 351 (527)
T cd03335 274 GANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDD 351 (527)
T ss_pred CCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999988655 3448999999999998864
No 8
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6e-64 Score=489.69 Aligned_cols=305 Identities=36% Similarity=0.565 Sum_probs=290.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 37 mi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~ 116 (517)
T TIGR02342 37 MIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQI 116 (517)
T ss_pred EEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc-cCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE-KRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~~I~i~~~~G~~ 159 (315)
|++.++++|+++++++ +..+++.|.++|+|++++|+.+.+.+.|++++++|+..+++.. .+.+|++.|+|.++.|++
T Consensus 117 a~~~~~~~L~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs 194 (517)
T TIGR02342 117 AADEAIKILDEMSIPV--DLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGT 194 (517)
T ss_pred HHHHHHHHHHHhcccc--CccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCC
Confidence 9999999999996654 3346889999999999999999999999999999999998531 235788899999999999
Q ss_pred cccccceeEEEEecCCCC-CCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 160 LEDTMLVKGVVIDKDFSH-PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~-~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
.+||++++|++|++++.+ ++||++++|+||++++++|++++++...++.+.++++++.+.++|+++++++++++.+.|+
T Consensus 195 ~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~ 274 (517)
T TIGR02342 195 IDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGC 274 (517)
T ss_pred hhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCC-----CHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+||+|+++| ++.+++||.++||.+++++++++|+|||++|||++++++++++++++|+|+.|+++++|.
T Consensus 275 ~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~ 348 (517)
T TIGR02342 275 NVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG 348 (517)
T ss_pred CEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC
Confidence 999999998 999999999999999999999999999999999999999999999999999999888875
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-63 Score=487.62 Aligned_cols=304 Identities=33% Similarity=0.536 Sum_probs=288.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 44 mi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~ 123 (522)
T cd03340 44 LIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRK 123 (522)
T ss_pred EEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCC--CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNP--DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~--~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++++++.+. .+++.|.++|+|+++||+.+.+.++|++++++|+..+++ ..|.++|+|+++.|+
T Consensus 124 a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i~~i~Gg 199 (522)
T cd03340 124 ALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD----DLDLDMIGIKKVPGG 199 (522)
T ss_pred HHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc----cCChhHheEeeecCC
Confidence 99999999999976654321 246789999999999999999999999999999999974 457778999999999
Q ss_pred CcccccceeEEEEecCCCCCC---CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQ---MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~---~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~ 235 (315)
++.||++++|++|++++.+++ ||++++||||+++++||++.+++.+.++.++++++++++.+.|++++.++++++.+
T Consensus 200 s~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~ 279 (522)
T cd03340 200 SLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVK 279 (522)
T ss_pred ChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876 48999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
.|+++|+++++|+|.+++||.++||++++++++++|+|||++|||++++++++++++++|+|++|+++++|.+
T Consensus 280 ~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~ 352 (522)
T cd03340 280 SGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGE 352 (522)
T ss_pred cCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653
No 10
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-63 Score=486.23 Aligned_cols=305 Identities=36% Similarity=0.556 Sum_probs=289.9
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||||+++||++|++++.+++++|+||..|++||+.
T Consensus 36 ~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~ 115 (515)
T cd03338 36 MIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQI 115 (515)
T ss_pred eeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccccc-CCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK-RDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~-~~~~~~~I~i~~~~G~~ 159 (315)
|++.++++|++++.+++. .+++.|.++|+|+++||+.+.+++.|++++++|+.++++.+. ..+|+++|+|.++.|++
T Consensus 116 a~~~~~~~L~~~a~~v~~--~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs 193 (515)
T cd03338 116 AAKKAVEILDSMSIPVDL--NDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGT 193 (515)
T ss_pred HHHHHHHHHHHhccCCCC--CCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCC
Confidence 999999999999766533 367889999999999999999999999999999999986432 35788899999999999
Q ss_pred cccccceeEEEEecCCCCCC-CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQ-MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~-~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
++||++++|++|++++.+++ ||+.++|+|+++++|||++.+++....+.++++++++.+.++|+++++++++++++.|+
T Consensus 194 ~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~ 273 (515)
T cd03338 194 IEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGC 273 (515)
T ss_pred hhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986 49999999999999999999999989999999999999999999999999999999999
Q ss_pred cEEEecCCC-----CHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+||+|+++| ++.+++||.++||.+++++++++|+|||++|||++++++++++++++|+|+.|+++++|.
T Consensus 274 ~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~ 347 (515)
T cd03338 274 NVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD 347 (515)
T ss_pred CEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC
Confidence 999999998 899999999999999999999999999999999999999999999999999999999974
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-62 Score=481.05 Aligned_cols=302 Identities=34% Similarity=0.496 Sum_probs=285.4
Q ss_pred CcccC--CCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy9923 1 MMVSS--DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 78 (315)
Q Consensus 1 mi~~~--~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~ 78 (315)
||+++ .|+++|||||+||+++|+++||+|+|++++|++||+++||||||+++|||+||+++.+|+++|+||+.|++||
T Consensus 41 mi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~ 120 (517)
T cd03336 41 ILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGY 120 (517)
T ss_pred EeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCC-CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccC
Q psy9923 79 ELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVG 157 (315)
Q Consensus 79 ~~a~~~~~~~L~~~s~~i~~~~-~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G 157 (315)
+.|.+.++++|+++++++..+. .+++.|.++|+|++++|+.+.+.+.|++++++|+..+++ ++|++.|++++++|
T Consensus 121 ~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G 196 (517)
T cd03336 121 RMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIKKLG 196 (517)
T ss_pred HHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc----cCCccceeEEEccC
Confidence 9999999999999976653222 246789999999999999999999999999999999963 56778899999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~-~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++++||++++|+++++++.+ .||+.++||||+++++||++++++. ++++.+++++|+..+.+.|++++++++++|.+.
T Consensus 197 ~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~ 275 (517)
T cd03336 197 GSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKH 275 (517)
T ss_pred CCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865 5799999999999999999999987 789999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|++++++++.|++.+++||.++||.+++++++++|+|||++|||++++++++++++++|+|+.|+++.+|.
T Consensus 276 gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~ 346 (517)
T cd03336 276 GINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE 346 (517)
T ss_pred CCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccCCCCcccccccceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 12
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-62 Score=480.36 Aligned_cols=306 Identities=32% Similarity=0.471 Sum_probs=286.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||++|||++||+++.+|+++|+||+.|++||+.
T Consensus 40 ~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~ 119 (536)
T TIGR02340 40 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRL 119 (536)
T ss_pred EEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-hccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc---ccCCCCccceEEEecc
Q psy9923 81 AAQCAVKHLETI-ADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL---EKRDVNFELIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~~-s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~---~~~~~~~~~I~i~~~~ 156 (315)
|++.++++|++. ++++ +..+.+.+.++|+|+++||+.+.+.+.|++++++|+..++.. +...+|+++|+++++.
T Consensus 120 a~~~~~~~L~~~~~~~~--~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~ 197 (536)
T TIGR02340 120 ACKEAVKYIKENLSVSV--DELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAH 197 (536)
T ss_pred HHHHHHHHHHHhhccCC--CcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEec
Confidence 999999999874 5554 334678899999999999999999999999999999999631 1123688899999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
|++..+|++++|++|++++.+++||+.++||||++++++|++.+++.++++.++++.+++.+.+.|++++.+.+++|.+.
T Consensus 198 G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~ 277 (536)
T TIGR02340 198 GGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKA 277 (536)
T ss_pred CCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCC------CCCCceeeeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL------TSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~ 308 (315)
|++||+++++|++.+++||.++||.+++++++++|+|||++|||++++++.++ +++++|+|++|+++++|.+
T Consensus 278 g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~ 355 (536)
T TIGR02340 278 GANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADD 355 (536)
T ss_pred CCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999988654 4456999999999999874
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=5.3e-62 Score=477.29 Aligned_cols=303 Identities=35% Similarity=0.504 Sum_probs=285.6
Q ss_pred CcccC-----CCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHH
Q psy9923 1 MMVSS-----DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIA 75 (315)
Q Consensus 1 mi~~~-----~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~ 75 (315)
||+++ .|+++|||||+||+++|+++||+|+|++++|++||+++||||||+++|||+||+++.+|+++|+||+.|+
T Consensus 50 mi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii 129 (533)
T PTZ00212 50 ILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTII 129 (533)
T ss_pred EeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 67887 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCC-CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEe
Q psy9923 76 DGFELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEG 154 (315)
Q Consensus 76 ~g~~~a~~~~~~~L~~~s~~i~~~~-~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~ 154 (315)
+||+.|++.++++|+++++++..+. .+++.|.++|+|++++|+.+.+.+.|++++++|+..+.+ ++|++.|++++
T Consensus 130 ~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~k 205 (533)
T PTZ00212 130 EGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIK 205 (533)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEE
Confidence 9999999999999999976654321 126789999999999999999999999999999998863 56788899999
Q ss_pred ccCCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHH
Q psy9923 155 KVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKV 233 (315)
Q Consensus 155 ~~G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~-~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i 233 (315)
++|++++||++++|+++++++.+ .||++++||||+++++||++++++. ++++.+++++++..+.+.|+++++++++.|
T Consensus 206 i~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~I 284 (533)
T PTZ00212 206 KPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKI 284 (533)
T ss_pred ecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5899999999999999999999997 889999999999999999999999999999
Q ss_pred HHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 234 KATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 234 ~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
.+.|+++++++++|++.++++|.++||.+++++++++++|||++|||+++++++++++++||+|++|+++.+|.+
T Consensus 285 i~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~ 359 (533)
T PTZ00212 285 LAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGED 359 (533)
T ss_pred HhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998853
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.4e-62 Score=477.88 Aligned_cols=303 Identities=32% Similarity=0.506 Sum_probs=287.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.| ++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 46 ~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~ 124 (522)
T TIGR02345 46 LIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYRE 124 (522)
T ss_pred EEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHH
Confidence 7889899 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCC-CCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVN-PDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~-~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~ 159 (315)
|.+.++++|++++++++.. ..+++.+.++|+|+++||+.+.++++|++++++|+..+++ +++|+++|+|+++.|++
T Consensus 125 a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~---~~~~~~~I~i~ki~Ggs 201 (522)
T TIGR02345 125 ALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDI---DDLDLKLIGVKKVQGGS 201 (522)
T ss_pred HHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhh---ccCChhHheEEeecCCC
Confidence 9999999999997766431 1246789999999999999999999999999999999974 36788899999999999
Q ss_pred cccccceeEEEEecCCCCCCC---CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQM---PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~---~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++||++++|++|++++.+++| |++++||||++++++|++.+.+.+..+.++++++++++.+.|++++.++++++.+.
T Consensus 202 ~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~ 281 (522)
T TIGR02345 202 LQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVES 281 (522)
T ss_pred HHhcceecceEEecccCccccccCCceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998865 89999999999999999999998899999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|+++|+|+++|++.+++||.++||++++++++++++|+|++|||++++++++++++++|+|+.|+++++|.
T Consensus 282 g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~ 352 (522)
T TIGR02345 282 GANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGS 352 (522)
T ss_pred CCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 15
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.3e-62 Score=475.80 Aligned_cols=303 Identities=26% Similarity=0.421 Sum_probs=286.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||+.
T Consensus 46 mi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~ 125 (531)
T TIGR02346 46 MVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQ 125 (531)
T ss_pred EEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc-cCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIAD-SFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~-~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~ 159 (315)
|++.++++|++++. +++ +..+++.+.++++|++++|+.+. ++.|++++++|+..+++.+.+.+|++.|+|+++.|++
T Consensus 126 a~~~~~~~L~~~~~~~~~-~~~~~~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s 203 (531)
T TIGR02346 126 ALKKAMEVLEELVVWEVE-DVRNKKELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGS 203 (531)
T ss_pred HHHHHHHHHHHhccccCC-CCCCHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCC
Confidence 99999999998864 443 33467889999999999999988 9999999999999998643336788899999999999
Q ss_pred cccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
.+||++++|++|++++. +||+.++|+||+++++||++.+++..+++.++++.++.++.+.|+++++++++++++.|++
T Consensus 204 ~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~ 281 (531)
T TIGR02346 204 ISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVN 281 (531)
T ss_pred hhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999964 5799999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 240 LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 240 lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||+++++|+|.++++|.++||.++++++..+|+|||.+|||++++++++++++++|+|++|+++++|.
T Consensus 282 lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~ 349 (531)
T TIGR02346 282 VIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG 349 (531)
T ss_pred EEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999875
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-61 Score=469.15 Aligned_cols=302 Identities=32% Similarity=0.474 Sum_probs=284.2
Q ss_pred CcccCC--CCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy9923 1 MMVSSD--GDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 78 (315)
Q Consensus 1 mi~~~~--g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~ 78 (315)
||+++. |+++|||||+||+++|+++||+|+|++++|++||+++||||||+++||++||+++.+|+++|+||+.|++||
T Consensus 42 mI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~ 121 (519)
T TIGR02341 42 ILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGY 121 (519)
T ss_pred EEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 788885 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCC-CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccC
Q psy9923 79 ELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVG 157 (315)
Q Consensus 79 ~~a~~~~~~~L~~~s~~i~~~~-~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G 157 (315)
+.|++.++++|+++++++..+. .+++.|.++|+|++++|+.+.+.+.|++++++|+..+.+ ..|.+.|++.++.|
T Consensus 122 ~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~----~~~~~~i~i~k~~G 197 (519)
T TIGR02341 122 RRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKG----SGNLDAIQIIKKLG 197 (519)
T ss_pred HHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcc----CCChhheEEEEccC
Confidence 9999999999999977664322 246889999999999999999999999999999998853 23667799999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~-~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
+++++|++++|+++++.+.+ .||+.++||+|+++++||++.+++. ++++.+++++++..+.+.|++++.++++.|.+.
T Consensus 198 ~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~ 276 (519)
T TIGR02341 198 GSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKH 276 (519)
T ss_pred CCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999865 6799999999999999999999886 889999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|++++++++.|++.+++||.++||.+++++++++|+|||++|||++++++++++++++|+|+.|+++.+|.
T Consensus 277 g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~ 347 (519)
T TIGR02341 277 NINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGE 347 (519)
T ss_pred CCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEecccccCCccccccCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999884
No 17
>KOG0361|consensus
Probab=100.00 E-value=7e-63 Score=440.32 Aligned_cols=303 Identities=31% Similarity=0.507 Sum_probs=288.9
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
+|+++.|+++|||||+||+|-|++-||+|+.|+++|++||.++||||||||+||+++|+++..+++.|+||..|+++|+.
T Consensus 48 Livd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rk 127 (543)
T KOG0361|consen 48 LIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRK 127 (543)
T ss_pred eeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCC--CCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVN--PDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~--~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~ 158 (315)
|...|++.++++++.++.. ..-++-|.++|.|+++||.+.+..++|+++++||+..+. +..+.+.|-|+|++||
T Consensus 128 a~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld----~~l~~~mIGIKKV~GG 203 (543)
T KOG0361|consen 128 ARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLD----NDLDLNMIGIKKVPGG 203 (543)
T ss_pred HHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhc----cccchhhcceeecCCC
Confidence 9999999999997766532 234788999999999999999999999999999999886 3466778999999999
Q ss_pred CcccccceeEEEEecCCCCCCC---CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQM---PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~---~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~ 235 (315)
+++||.+++|+.|.+.|++.+| |+++.||||++||..||....+.++++++.++++|+.+.+.||+.+.++++++.+
T Consensus 204 ~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~ 283 (543)
T KOG0361|consen 204 AMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHE 283 (543)
T ss_pred ccchhhhccceeeeehccccchhhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999998875 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
.|+|+|++.-.|.|.|.|||++++|.|..||+.+||.|+..++|+++.++.+++.++.||.|+.|+|+++|.
T Consensus 284 sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 284 SGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 18
>KOG0358|consensus
Probab=100.00 E-value=8.9e-62 Score=432.52 Aligned_cols=305 Identities=37% Similarity=0.571 Sum_probs=289.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|++-||+|+||++.+.+||.++||||||+|||||+||+.+.+|+++|+||+.|...|+.
T Consensus 54 MIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~ 133 (534)
T KOG0358|consen 54 MIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQS 133 (534)
T ss_pred HhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc-ccCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL-EKRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~-~~~~~~~~~I~i~~~~G~~ 159 (315)
|.+.++++|.+++.++.. ++++.|.+-|.|+++||+.++|+..+++++++|+.++... ...++|+..|+|.+..||.
T Consensus 134 a~~~~v~il~~m~~~vel--sdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgt 211 (534)
T KOG0358|consen 134 AAKKAVDILDEMSVPVEL--SDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGT 211 (534)
T ss_pred HHHHHHHHHHhcCCCccc--CcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCc
Confidence 999999999999766655 4899999999999999999999999999999999999753 3346888899999999999
Q ss_pred cccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
++|+++++|++|++......-|++++++||.++.|.+.++|+++...+.++++.|++.+.++|++|+.+++++|++.|+|
T Consensus 212 vdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcn 291 (534)
T KOG0358|consen 212 VDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCN 291 (534)
T ss_pred cchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999999887666799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-----CHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEE-Eeee
Q psy9923 240 LAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQT-QTMF 307 (315)
Q Consensus 240 lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~-~~~~ 307 (315)
++++|++| +|.++|||++-+|++++.+.++|+|.+|+.+|+.|+.+++.++++.||+++.++|. .-|.
T Consensus 292 vLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~ 365 (534)
T KOG0358|consen 292 VLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDSSGE 365 (534)
T ss_pred EEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhcccCCC
Confidence 99999976 89999999999999999999999999999999999999999999999999999997 3444
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-59 Score=455.65 Aligned_cols=277 Identities=30% Similarity=0.494 Sum_probs=260.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||||+++||++||+++.+++++|+||..|++||+.
T Consensus 40 mi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~ 119 (484)
T cd03342 40 MLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFEL 119 (484)
T ss_pred EEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|.+.++++|++++.+++.+ .+++.+.++|+|+++||+.+.+.+.|++++++|+..+++.+ ..+|++.|+|+++.|+++
T Consensus 120 a~~~~~~~L~~~s~~v~~~-~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs~ 197 (484)
T cd03342 120 AKNKALKFLESFKVPVEID-TDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKSD 197 (484)
T ss_pred HHHHHHHHHHHhcccCCCC-CCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcC-CccChhHeEEEEecCCCh
Confidence 9999999999997766432 36789999999999999999999999999999999998632 257888999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
.||++++|++|++++.+++||++++||||+++++||++++++....+.++ |
T Consensus 198 ~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~~~~~~-----------------------------l 248 (484)
T cd03342 198 SDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYS-----------------------------V 248 (484)
T ss_pred hhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCcEEEEE-----------------------------E
Confidence 99999999999999999999999999999999999999988776665532 9
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+|+++|++.++++|.++||.+++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 249 vi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~ 316 (484)
T cd03342 249 VINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEE 316 (484)
T ss_pred EEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCChhhCcccceEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998863
No 20
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=8.1e-58 Score=445.14 Aligned_cols=300 Identities=36% Similarity=0.584 Sum_probs=284.2
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.+++++|+||..|++||+.
T Consensus 17 li~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~ 96 (485)
T PF00118_consen 17 LIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQE 96 (485)
T ss_dssp EEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred EEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhh
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.+++.|++++++++.+ .+.+.++|+|++++|+...|.+.|++++++|+..+.+ .+|++.+.++++.|++.
T Consensus 97 ~~~~~~~~l~~~s~~~~~~---~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~----~~~~~~i~i~~i~g~~~ 169 (485)
T PF00118_consen 97 ALKIILEYLEKISIPINND---DESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS----NFDLDNIKIIKIPGGSI 169 (485)
T ss_dssp HHHHHHHHHHHHSEESTST---SHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT----THHGGGEEEEEEESSSS
T ss_pred hhhhhhhhhhhhhcccccc---chhhhhhhcccccccccccchhhhhhhHHHHHHhhcc----cccccchhhhhhccccc
Confidence 9999999999997777632 1889999999999999999999999999999944432 26667799999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
+||++++|++|++++.+++||+++++|||++++++|++.++ .++++.++++++++.+.++|+++++++++++.+.|+++
T Consensus 170 ~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~l 248 (485)
T PF00118_consen 170 SDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNL 248 (485)
T ss_dssp GGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSE
T ss_pred cccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhhhhhccccceEeeeccce
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+++++|++.++++|.++||.+++++++++|+|||++|||++++++++++++++|+|+.++++.+|.+
T Consensus 249 Ii~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~ 316 (485)
T PF00118_consen 249 IISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNK 316 (485)
T ss_dssp EEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSS
T ss_pred eeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999989999999999988874
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-58 Score=443.53 Aligned_cols=264 Identities=37% Similarity=0.611 Sum_probs=247.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++||++||+++.+|+++|+||+.|++||+.
T Consensus 44 mi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~ 123 (480)
T cd03337 44 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRK 123 (480)
T ss_pred EeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccccc-C--CCCcc-ceEEEecc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEK-R--DVNFE-LIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~-~--~~~~~-~I~i~~~~ 156 (315)
|++.++++|+++++++ +..+++.|.++++|++++|+.+.|.+.|++++++|+..+++... . .+|++ +|+|++++
T Consensus 124 a~~~~~~~L~~~~~~~--~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~ 201 (480)
T cd03337 124 ALEDALKILEEISIPV--DVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIP 201 (480)
T ss_pred HHHHHHHHHHHhcccc--ccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEec
Confidence 9999999999986554 44478899999999999999999999999999999999986421 1 35554 59999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
|++.+||++++|++|++++.++.||++++||||+++++||++
T Consensus 202 Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~-------------------------------------- 243 (480)
T cd03337 202 GGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY-------------------------------------- 243 (480)
T ss_pred CCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce--------------------------------------
Confidence 999999999999999999999999999999999999999987
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~ 307 (315)
||+++++|++.+++||.++||.+++++++++|+|||++|||+++++++++++++||+ |+.++++++|.
T Consensus 244 ---lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~ 312 (480)
T cd03337 244 ---LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGD 312 (480)
T ss_pred ---EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999 67777777764
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-56 Score=429.76 Aligned_cols=299 Identities=37% Similarity=0.519 Sum_probs=279.6
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||.|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 39 ~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~ 118 (524)
T COG0459 39 MLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRL 118 (524)
T ss_pred EEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 68888779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|.+.++++|++.+.++..+ +.+. +++.|++++|...++ +.+++++++|+.++++.+ .|++.|.+.+..|++.
T Consensus 119 A~~~~~e~l~~~a~~v~~~--~~~~--~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~---~d~~~i~~vk~~gg~~ 190 (524)
T COG0459 119 AVEKAVEELKEIAKPVSDS--EEEL--KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQ---SDLDGIIIVKESGGSE 190 (524)
T ss_pred HHHHHHHHHHHhhccCCcc--hhhh--hhhhheeeeeeccCh-HHHHHHHHHHHHHhcccc---cccCCeEEEEecCCCc
Confidence 9999999999997776543 2222 889999999999887 999999999999998632 2778899999999999
Q ss_pred ccccceeEEEEecCC-CCCCCC-ceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q psy9923 161 EDTMLVKGVVIDKDF-SHPQMP-KELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQ-EKFASMVDKVKATG 237 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~-~~~~~~-~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~-~~~~~~~~~i~~~~ 237 (315)
.++++++|++|++++ +++.|| +.++||+|++++++|++.+++.+.++.++++.++..|.++|+ +.+..+++.+.+.+
T Consensus 191 ~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g 270 (524)
T COG0459 191 TELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGG 270 (524)
T ss_pred cceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999955 566678 899999999999999999999999999999999999999999 99999999999999
Q ss_pred Cc-EEEecCCCCHHHHHHHHhCCCCeeecCChhhH-HHHHHHHCCeeccCCCCCCCCCcee--eeeEEEEEeee
Q psy9923 238 AT-LAICQWGFDDEANHLLLQKQLPAVRWVGGPDI-ELIAIVTGGRIVPRFEELTSEKLGK--AGLVRQTQTMF 307 (315)
Q Consensus 238 ~~-lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l-~~ls~~tGa~ii~~l~~l~~~~lG~--~~~v~~~~~~~ 307 (315)
+| +++++++|+|.+++||.+.+|++++++.++++ ++++++|||++++.++++++..+|. |+.|++..+|.
T Consensus 271 ~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~ 344 (524)
T COG0459 271 ANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD 344 (524)
T ss_pred CCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc
Confidence 99 99999999999999999999999999999999 8999999999999999999999999 99999997753
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-55 Score=427.14 Aligned_cols=264 Identities=48% Similarity=0.699 Sum_probs=250.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++||++|++++.+++++|+||+.|++||+.
T Consensus 36 ~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~ 115 (464)
T cd00309 36 MLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEK 115 (464)
T ss_pred EEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|+++++++ +..+++.+.++|+|+++||+.+.|++.+++++++|+..+++... .+|.+.|+|++++||++
T Consensus 116 a~~~~~~~L~~~~~~~--~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~ 192 (464)
T cd00309 116 AVEKALEILKEIAVPI--DVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG-DVDLGVIRVEKKKGGSL 192 (464)
T ss_pred HHHHHHHHHHHhcCcc--CCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC-ccccceEEEEecCCCCc
Confidence 9999999999997664 33478899999999999999999999999999999999986432 45677899999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
.||++++|++|++++.+++||+.++||||++++++|++ |
T Consensus 193 ~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~-----------------------------------------l 231 (464)
T cd00309 193 EDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY-----------------------------------------V 231 (464)
T ss_pred ccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-----------------------------------------E
Confidence 99999999999999999999999999999999999987 9
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+++++|++.++++|.++||.+++++++++|+|||++|||++++++++++++++|+|+.|+++++|.+
T Consensus 232 Ii~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~ 299 (464)
T cd00309 232 VIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDE 299 (464)
T ss_pred EecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998864
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-55 Score=426.64 Aligned_cols=266 Identities=31% Similarity=0.434 Sum_probs=247.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||+++|+++||+++.+++++|+||+.|++||+.
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~ 115 (472)
T cd03341 36 MVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEK 115 (472)
T ss_pred EEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+...+..+.+.+.++++|+++||..+ +.++|++++++|+..+++...+.+|++.|+|++++|++.
T Consensus 116 a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~ 194 (472)
T cd03341 116 ALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSL 194 (472)
T ss_pred HHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCc
Confidence 9999999999986542223346788999999999999986 689999999999999986432467888999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
+||++++|++|++++. .++++++||||++++++|++ |++|
T Consensus 195 ~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~--------------------------------------g~~l 234 (472)
T cd03341 195 EDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI--------------------------------------GVNV 234 (472)
T ss_pred ccceEEeeEEEccccC--CCceeccCCcEEEEeccccC--------------------------------------CCeE
Confidence 9999999999998764 45688999999999999987 8999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|+++++|++.+++||.++||.+++++++++|+|||++|||++++++++++++++|+|++|+++++|.
T Consensus 235 vi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~ 301 (472)
T cd03341 235 IVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGD 301 (472)
T ss_pred EEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 25
>KOG0363|consensus
Probab=100.00 E-value=4.2e-56 Score=394.62 Aligned_cols=297 Identities=36% Similarity=0.526 Sum_probs=279.5
Q ss_pred CCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9923 6 DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 85 (315)
Q Consensus 6 ~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~ 85 (315)
.|.+.+||||+|||+++.+.+|+|++|++.++-||.++|||||+|+|||++||++|.+|+.+.+||+.|+.|||.|.+.|
T Consensus 53 ~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a 132 (527)
T KOG0363|consen 53 AGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAA 132 (527)
T ss_pred CCceEEecchHHHHHhcCCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCC-CCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCccccc
Q psy9923 86 VKHLETIADSFPVN-PDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTM 164 (315)
Q Consensus 86 ~~~L~~~s~~i~~~-~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~~dS~ 164 (315)
.+.|.+.++.-..+ ...++.|.++|+|.++||+.+.+.++|++|+++|+.++. +.-|++.|+|+|+.||++.||+
T Consensus 133 ~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLk----Gs~nL~~IqIIK~~Gg~l~dSf 208 (527)
T KOG0363|consen 133 LEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLK----GSTNLEAIQIIKKLGGKLEDSF 208 (527)
T ss_pred HHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCCCccceeeehhcCCcccccc
Confidence 99998875543322 234889999999999999999999999999999999996 3457888999999999999999
Q ss_pred ceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCC-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEe
Q psy9923 165 LVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAIC 243 (315)
Q Consensus 165 ~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~-~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~ 243 (315)
+-+|+++++.+-. +.|++++|+||++-|.+++..|.+. ++.++++|...+.+++..|++.++..+++|.++|+|+.+.
T Consensus 209 LDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 209 LDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 9999999998865 4599999999999999999999886 7899999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 244 QWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 244 ~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
.+-|.+..+++|...||+++.+.+.+-+||++.+||+.++++|++++..++|+|+.+++..+|.
T Consensus 288 RQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999988875
No 26
>KOG0360|consensus
Probab=100.00 E-value=2.1e-56 Score=407.56 Aligned_cols=307 Identities=33% Similarity=0.465 Sum_probs=285.6
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
|++++.|++++||||+|||+.|.++||++++|++.++.||+++|||||+++++|++|++++.+|+.+++||..++.||+.
T Consensus 47 mlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ 126 (545)
T KOG0360|consen 47 MLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRL 126 (545)
T ss_pred hccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc--c-CCCCccceEEEeccC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--K-RDVNFELIKVEGKVG 157 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~--~-~~~~~~~I~i~~~~G 157 (315)
|+..+++++.+- ...+++...+..|.++++|++++|+.....+++++++++|+..+.-.. . ...-++.++|.+..|
T Consensus 127 ac~e~~k~i~~~-~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG 205 (545)
T KOG0360|consen 127 ACIEAVKYITEG-LSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHG 205 (545)
T ss_pred HHHHHHHHhhcc-ceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCC
Confidence 999999999763 245556668899999999999999999999999999999999875311 1 112345699999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~ 237 (315)
.+..||.+++|+.++...++..||+++.++||++|++.|...+......+.+.+++.++++.+.|....++.+++|...|
T Consensus 206 ~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~g 285 (545)
T KOG0360|consen 206 KSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATG 285 (545)
T ss_pred ccchhheeecceeeeccHhhhccccccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCC------CCCCceeeeeEEEEEeeee
Q psy9923 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL------TSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 238 ~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~ 308 (315)
+|+|+++++|||.+++||+++|+++++|++++||++|+++||+++++++.++ ++..+|+|++|.+.+||.+
T Consensus 286 anvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dd 362 (545)
T KOG0360|consen 286 ANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDD 362 (545)
T ss_pred CcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999855 4568999999999998864
No 27
>KOG0362|consensus
Probab=100.00 E-value=5.9e-53 Score=387.23 Aligned_cols=299 Identities=29% Similarity=0.426 Sum_probs=278.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
|++|+.|+.++|||.+||+++|+++||+|+||+++++.|+++.||||+++|+||++||++|.+||..|++|..|++||+.
T Consensus 54 ~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~ 133 (537)
T KOG0362|consen 54 MVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYET 133 (537)
T ss_pred eeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|.+.+++.|+++....-.+..|.+ ..+++++.+|...+ .+++++++++|+..+.+. ..||.++|+|+++.|+++
T Consensus 134 A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~-ed~l~~lVa~ac~si~p~--~~FnvdnIrVcKi~Gg~l 207 (537)
T KOG0362|consen 134 ATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGN-EDFLTKLVAKACVSILPL--MSFNVDNIRVCKILGGGL 207 (537)
T ss_pred HHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcch-HHHHHHHHHHHHHhhccc--ccccccceEEEEEecCCc
Confidence 999999999998544223334444 77888888876553 789999999999999875 348999999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
++|+++.|++|++.+. +-+++.+.+||++++||++...+++++++.+++++++..|.+.|+..+...++.|...|+++
T Consensus 208 ~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkV 285 (537)
T KOG0362|consen 208 EDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKV 285 (537)
T ss_pred ccceeeEEEEeccccC--CcccccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeE
Confidence 9999999999999886 44577889999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|++.+.|++++++||++++|++++--++.||+|+|+..||++++++..+.++.+|+|++|+..++|.
T Consensus 286 iV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~ 352 (537)
T KOG0362|consen 286 IVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGD 352 (537)
T ss_pred EEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 28
>KOG0364|consensus
Probab=100.00 E-value=2.9e-54 Score=390.28 Aligned_cols=307 Identities=33% Similarity=0.586 Sum_probs=292.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
|+.++.|.+..||||..|++++++.||+|+-+.+.+.+||+++|||||||++||+++|.++..++++|+||+.++++|.+
T Consensus 47 mlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~ 126 (527)
T KOG0364|consen 47 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIK 126 (527)
T ss_pred HhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCc-cceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNF-ELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~-~~I~i~~~~G~~ 159 (315)
|+..+++.+++.+ +++|..+...+.++..+++.+|+.+.|++.++++..+|+..++......+|+ .+.+++|++||.
T Consensus 127 aled~~~~~~~~~--~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~ 204 (527)
T KOG0364|consen 127 ALEDNIRALDKIS--IPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGL 204 (527)
T ss_pred HHHHHHHHHHhhc--ccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccc
Confidence 9999999999885 4455567888999999999999999999999999999999998643335777 579999999999
Q ss_pred cccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
+.+|++++|+.+.+...||.|.+.++||||.+|||||+|.+.++++++.+...+++....+-|++++..+++.|....++
T Consensus 205 l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pD 284 (527)
T KOG0364|consen 205 LEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPD 284 (527)
T ss_pred ccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeeeec
Q psy9923 240 LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMFKF 309 (315)
Q Consensus 240 lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~ 309 (315)
+|+++++++|.+++||.+.||.+++++++.|-.|++++|||+++++.+|+.+.+.|+ |+.|+.+.+|.-|
T Consensus 285 lVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdey 355 (527)
T KOG0364|consen 285 LVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEY 355 (527)
T ss_pred EEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceeccChhhCchhccCcccceeeeeccCchh
Confidence 999999999999999999999999999999999999999999999999999999995 8899999998765
No 29
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.1e-51 Score=399.33 Aligned_cols=261 Identities=28% Similarity=0.419 Sum_probs=236.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++||||||+++||++||+++.+|+++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~ 117 (542)
T PRK12849 38 VIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKR 117 (542)
T ss_pred EEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|++.++++|++++++++ +.+.|.++|+|+.+ +++.+++++++|+..+++. +. +.+. .
T Consensus 118 G~~~A~~~~~~~L~~~s~~~~----~~~~l~~va~ts~~------~~~~l~~lv~~Av~~v~~~---g~----i~i~--~ 178 (542)
T PRK12849 118 GIDKAVEAVVEELKALARPVS----GSEEIAQVATISAN------GDEEIGELIAEAMEKVGKD---GV----ITVE--E 178 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcC------ChHHHHHHHHHHHHHhccC---Cc----EeEE--e
Confidence 999999999999999976653 67789999999876 3799999999999999742 21 4454 5
Q ss_pred CCCccc-ccceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLED-TMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~d-S~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++.+| +++++|++|++++.+++| ++.++||+|+++++.+ ++++++ .+
T Consensus 179 g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-------------~~~~~~-----------~~ 234 (542)
T PRK12849 179 SKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI-------------SSLQDL-----------LP 234 (542)
T ss_pred CCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc-------------CCHHHH-----------HH
Confidence 888876 799999999999999875 7888999999999954 456665 56
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhC------CCCeeecCC-----hhhHHHHHHHHCCeecc-----CCCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVG-----GPDIELIAIVTGGRIVP-----RFEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~-----~~~l~~ls~~tGa~ii~-----~l~~l~~~ 292 (315)
+++++.+.|++|||++++|++.|+++|.++ +|.++++++ +++|+|||++|||++++ ++++++++
T Consensus 235 ~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~ 314 (542)
T PRK12849 235 LLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLD 314 (542)
T ss_pred HHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHH
Confidence 889999999999999999999999999999 899999876 56699999999999999 68999999
Q ss_pred CceeeeeEEEEE
Q psy9923 293 KLGKAGLVRQTQ 304 (315)
Q Consensus 293 ~lG~~~~v~~~~ 304 (315)
+||+|++|++.+
T Consensus 315 ~LG~~~~v~~~~ 326 (542)
T PRK12849 315 DLGRAKRVTITK 326 (542)
T ss_pred HCceeeEEEEee
Confidence 999999999976
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=4.6e-51 Score=400.68 Aligned_cols=261 Identities=21% Similarity=0.360 Sum_probs=238.2
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++||||||+++||++||+++.+|+++|+||..|++
T Consensus 50 mi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~ 129 (555)
T PTZ00114 50 IIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKR 129 (555)
T ss_pred EEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.++++|++++.+++ +.+.+.++|+|++++ ++.+++++++|+..+++ ++. |.+..
T Consensus 130 G~~~A~~~~~~~L~~~s~~v~----~~~~l~~va~ts~~~------~~~l~~li~eAv~~vg~---~g~------I~~~~ 190 (555)
T PTZ00114 130 GIDLAVKVVLESLKEQSRPVK----TKEDILNVATISANG------DVEIGSLIADAMDKVGK---DGT------ITVED 190 (555)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHHcCC------hHHHHHHHHHHHHHhCc---CCc------EEEcC
Confidence 999999999999999976663 577899999999876 68999999999999974 222 45567
Q ss_pred CCCcccc-cceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDT-MLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~dS-~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++..|| ++++|++|++++.+++| |+.+++|+|+++|++|+ ++++ +.+
T Consensus 191 g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-------------~~~~-----------i~~ 246 (555)
T PTZ00114 191 GKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-------------SIQS-----------ILP 246 (555)
T ss_pred CCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-------------CHHH-----------HHH
Confidence 9999998 89999999999999976 78889999999999986 3444 468
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCC------CCeeec-----CChhhHHHHHHHHCCeeccCC------CCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQ------LPAVRW-----VGGPDIELIAIVTGGRIVPRF------EELTS 291 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~------I~~i~~-----v~~~~l~~ls~~tGa~ii~~l------~~l~~ 291 (315)
+++++.+.|++|+|++++|++.|+++|..|+ |.++++ +++++|+|||.+|||+++++. +++++
T Consensus 247 ~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~ 326 (555)
T PTZ00114 247 ILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDP 326 (555)
T ss_pred HHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCH
Confidence 8999999999999999999999999999997 778876 678999999999999999997 78888
Q ss_pred CCceeeeeEEEEE
Q psy9923 292 EKLGKAGLVRQTQ 304 (315)
Q Consensus 292 ~~lG~~~~v~~~~ 304 (315)
++||+|++|++++
T Consensus 327 ~~LG~a~~v~~~~ 339 (555)
T PTZ00114 327 SMLGSAKKVTVTK 339 (555)
T ss_pred HHcCCCceEEEEe
Confidence 8999999999988
No 31
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.2e-51 Score=397.61 Aligned_cols=262 Identities=27% Similarity=0.412 Sum_probs=239.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| .|+|++++|++||+++||||||+++||++||+++.+++++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~ 117 (542)
T PRK00013 38 VLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKR 117 (542)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 688999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.++++|++++++++ +.+.|.++|.|++++ ++.+++++++|+..+++. +. |.|++..
T Consensus 118 G~~~A~~~~~~~L~~~a~~~~----~~~~l~~va~ts~~~------~~~ls~lv~~Av~~v~~~---g~----i~i~~~~ 180 (542)
T PRK00013 118 GIDKAVEAAVEELKKISKPVE----DKEEIAQVATISANG------DEEIGKLIAEAMEKVGKE---GV----ITVEESK 180 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHhcccc------hHHHHHHHHHHHHHhCcC---Cc----EEEEEcC
Confidence 999999999999999977653 678899999998763 899999999999999742 22 8888767
Q ss_pred CCCcccccceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASM 229 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~ 229 (315)
| ...+|++++|++|++++.+++| |+.++||+|+++|+.+ ++++++ .++
T Consensus 181 ~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i-------------~~~~~l-----------~~~ 235 (542)
T PRK00013 181 G-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI-------------SNIQDL-----------LPV 235 (542)
T ss_pred C-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-------------CCHHHH-----------HHH
Confidence 6 7789999999999999999976 7888999999999953 556665 588
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCC------CCeeecCC-----hhhHHHHHHHHCCeecc-----CCCCCCCCC
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQ------LPAVRWVG-----GPDIELIAIVTGGRIVP-----RFEELTSEK 293 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~------I~~i~~v~-----~~~l~~ls~~tGa~ii~-----~l~~l~~~~ 293 (315)
++++.+.|++|||++++|++.|+++|..++ |.++++++ +++|+|||++|||++++ +++++++++
T Consensus 236 l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~ 315 (542)
T PRK00013 236 LEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLED 315 (542)
T ss_pred HHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHH
Confidence 999999999999999999999999999997 77888775 89999999999999999 799999999
Q ss_pred ceeeeeEEEEE
Q psy9923 294 LGKAGLVRQTQ 304 (315)
Q Consensus 294 lG~~~~v~~~~ 304 (315)
||+|+.|++.+
T Consensus 316 LG~~~~v~~~~ 326 (542)
T PRK00013 316 LGQAKKVVVTK 326 (542)
T ss_pred CCeeeEEEEec
Confidence 99999999985
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.5e-50 Score=394.33 Aligned_cols=261 Identities=27% Similarity=0.420 Sum_probs=237.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++||||||+++||++||+++.+++++|+||..|++
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~ 115 (520)
T cd03344 36 VIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKR 115 (520)
T ss_pred EEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 788999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.++++|++++++++ +.+.+.++|+|++++ ++.+++++++|+..+++. +. |.+ ..
T Consensus 116 G~~~a~~~~~~~L~~~~~~i~----~~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~~----i~v--~~ 176 (520)
T cd03344 116 GIEKAVEAVVEELKKLSKPVK----TKEEIAQVATISANG------DEEIGELIAEAMEKVGKD---GV----ITV--EE 176 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC---Cc----EEE--Ee
Confidence 999999999999999977663 688899999999987 799999999999998742 22 555 36
Q ss_pred CCCccc-ccceeEEEEecCCCCCCC---C----ceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLED-TMLVKGVVIDKDFSHPQM---P----KELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~d-S~~i~G~vl~~~~~~~~~---~----~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++..| +++++|++|++++.+++| | +.++||+|+++|+++ ++++++ .+
T Consensus 177 g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-------------~~~~~l-----------~~ 232 (520)
T cd03344 177 GKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-------------SSIQEL-----------LP 232 (520)
T ss_pred CCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC-------------CCHHHH-----------HH
Confidence 888888 699999999999999887 4 568899999999995 455665 57
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC------CeeecC-----ChhhHHHHHHHHCCeecc-----CCCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRWV-----GGPDIELIAIVTGGRIVP-----RFEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~v-----~~~~l~~ls~~tGa~ii~-----~l~~l~~~ 292 (315)
+++++.+.|++|||++++|++.++++|.+++| .++++. ++++|+|||++|||++++ ++++++++
T Consensus 233 ~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~ 312 (520)
T cd03344 233 ILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLE 312 (520)
T ss_pred HHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHH
Confidence 88999999999999999999999999999999 676655 899999999999999999 78999999
Q ss_pred CceeeeeEEEEE
Q psy9923 293 KLGKAGLVRQTQ 304 (315)
Q Consensus 293 ~lG~~~~v~~~~ 304 (315)
+||+|++|++.+
T Consensus 313 ~LG~~~~v~~~~ 324 (520)
T cd03344 313 DLGRAKKVVVTK 324 (520)
T ss_pred HCCcceEEEEee
Confidence 999999999987
No 33
>KOG0359|consensus
Probab=100.00 E-value=2.6e-52 Score=377.11 Aligned_cols=301 Identities=30% Similarity=0.472 Sum_probs=286.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
|++++.|++.+|+||.+.+++|+++||.+-++..++.+||+..|||||++|+|.|+|+++|...+..|+||..|..||..
T Consensus 45 mlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~ 124 (520)
T KOG0359|consen 45 MLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEA 124 (520)
T ss_pred hccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|.+.++++|+..+.++ +++.|..+++|++++|....-.+.+++++++|+..+.+ +...+|+.++.|.+....+.
T Consensus 125 a~~~~l~~L~k~~~~~-----~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~-~~~~idl~mveim~mq~~s~ 198 (520)
T KOG0359|consen 125 AKNKALEFLEKVSREV-----DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR-QEEPIDLFMVEIMEMQHKSL 198 (520)
T ss_pred HHHHHHhhhhccccch-----hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc-CCCCcchhHHHhhhhccCch
Confidence 9999999999775544 58999999999999999998899999999999998872 23457888999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc-
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT- 239 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~- 239 (315)
.|+.+++|++++++..|+.||++++|+.|++.|.+|||+|++.++.+-+++++|.+.+...|++++.+.+++|.+.+..
T Consensus 199 ~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~v 278 (520)
T KOG0359|consen 199 HDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKV 278 (520)
T ss_pred hhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ---EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 240 ---LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 240 ---lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+|+.+++|||..++.|+++||++++|.++..|||+..+||+..+++++|++++.+|+|+.|++..+|.
T Consensus 279 c~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGE 349 (520)
T KOG0359|consen 279 CEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGE 349 (520)
T ss_pred ceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999995
No 34
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-50 Score=394.30 Aligned_cols=262 Identities=26% Similarity=0.393 Sum_probs=236.5
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++||++||+++.+|+++|+||..|++
T Consensus 39 mi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~ 118 (541)
T PRK12851 39 VIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKR 118 (541)
T ss_pred EEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|++.++++|++++++++ +.+.+.++|+++++ +++.+++++++|+..+++. +. +.|.+..
T Consensus 119 G~~~a~~~~~~~L~~~s~~~~----~~~~l~~va~~s~~------~~~~l~~lv~~Av~~vg~~---g~----i~i~~~~ 181 (541)
T PRK12851 119 GIDRAVAAVVEELKANARPVT----TNAEIAQVATISAN------GDAEIGRLVAEAMEKVGNE---GV----ITVEESK 181 (541)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhccc---Cc----eEEEEcc
Confidence 999999999999999976653 57789999988774 4899999999999999742 22 5666644
Q ss_pred CCCcccccceeEEEEecCCCCCC-------CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQ-------MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASM 229 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~-------~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~ 229 (315)
+...++++++|++|++++.+++ ||+.++||+|+++|++++ +.++ +.++
T Consensus 182 -~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-------------~~~~-----------i~~~ 236 (541)
T PRK12851 182 -TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-------------NLQD-----------LLPV 236 (541)
T ss_pred -CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-------------cHHH-----------HHHH
Confidence 4567899999999999999986 888999999999999842 2333 4788
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCC------Ceeec-----CChhhHHHHHHHHCCeecc-----CCCCCCCCC
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRW-----VGGPDIELIAIVTGGRIVP-----RFEELTSEK 293 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~-----v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~ 293 (315)
++.+.+.|++|||++++|++.|+++|..++| .++++ +++++|+|||++|||++++ +++++++++
T Consensus 237 l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~ 316 (541)
T PRK12851 237 LEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQ 316 (541)
T ss_pred HHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHH
Confidence 9999999999999999999999999999998 66665 8999999999999999999 688999999
Q ss_pred ceeeeeEEEEE
Q psy9923 294 LGKAGLVRQTQ 304 (315)
Q Consensus 294 lG~~~~v~~~~ 304 (315)
||+|++|++.+
T Consensus 317 LG~~~~v~~~~ 327 (541)
T PRK12851 317 LGRAKKVVVEK 327 (541)
T ss_pred cCCccEEEEEc
Confidence 99999999988
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.6e-50 Score=393.22 Aligned_cols=261 Identities=27% Similarity=0.424 Sum_probs=235.9
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++||||||+++||++||+++.+|+++|+||..|++
T Consensus 37 mi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~ 116 (524)
T TIGR02348 37 VLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKR 116 (524)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.++++|++++.+++ +.+.+.++|+|+.++ ++.+++++++|+..+++. +. |.|..
T Consensus 117 G~~~A~~~~l~~L~~~s~~~~----~~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~---~~----i~v~~-- 177 (524)
T TIGR02348 117 GIEKAVEAAVEELKKLSKPVK----GKKEIAQVATISANN------DEEIGSLIAEAMEKVGKD---GV----ITVEE-- 177 (524)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhccC------hHHHHHHHHHHHHHhCcC---Cc----Eeeec--
Confidence 999999999999999977664 678899999998764 799999999999999752 22 55554
Q ss_pred CCCc-ccccceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKL-EDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~-~dS~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|+.. .+|++++|++|++++.+++| ++.++||+|+++++++ ++++++ .+
T Consensus 178 g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i-------------~~~~~i-----------~~ 233 (524)
T TIGR02348 178 SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI-------------SNIKDL-----------LP 233 (524)
T ss_pred CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc-------------CCHHHH-----------HH
Confidence 6656 56899999999999999986 7788999999999953 456664 78
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhC------CCCeeecCC-----hhhHHHHHHHHCCeecc-----CCCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVG-----GPDIELIAIVTGGRIVP-----RFEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~-----~~~l~~ls~~tGa~ii~-----~l~~l~~~ 292 (315)
+++.+.+.|+|||+++++|++.|+++|..| +|.++++++ +++|+|||++|||++++ ++++++++
T Consensus 234 ~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~ 313 (524)
T TIGR02348 234 LLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLD 313 (524)
T ss_pred HHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHH
Confidence 899999999999999999999999999997 788998774 48999999999999999 89999999
Q ss_pred CceeeeeEEEEE
Q psy9923 293 KLGKAGLVRQTQ 304 (315)
Q Consensus 293 ~lG~~~~v~~~~ 304 (315)
+||+|++|++.+
T Consensus 314 ~LG~~~~v~~~~ 325 (524)
T TIGR02348 314 DLGKAKKVTVDK 325 (524)
T ss_pred HCCCceEEEEee
Confidence 999999999987
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.4e-50 Score=391.43 Aligned_cols=262 Identities=25% Similarity=0.412 Sum_probs=234.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~----a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||||+++||++||+++.+|+++|+||..|++
T Consensus 39 mi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~ 118 (544)
T PRK12850 39 VLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKR 118 (544)
T ss_pred EEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHH
Confidence 7889999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|++.++++|++++.+++ +.+.|.++|++++++ ++.+++++++|+..+++. +.++++.+ +..
T Consensus 119 G~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~--g~i~v~~~---~~~ 183 (544)
T PRK12850 119 GIDLAVAAVVDELKKIAKKVT----SSKEIAQVATISANG------DESIGEMIAEAMDKVGKE--GVITVEEA---KTL 183 (544)
T ss_pred HHHHHHHHHHHHHHHhccCCC----CHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc--CceeeEEc---ccc
Confidence 999999999999999976663 678899999998876 799999999999999752 22322222 122
Q ss_pred CCCcccccceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASM 229 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~ 229 (315)
| .++++++|++|++++.+++| |+.++||+|+++|+.+ ++.++ +.++
T Consensus 184 g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i-------------~~~~~-----------i~~~ 236 (544)
T PRK12850 184 G---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI-------------SNLQD-----------LLPI 236 (544)
T ss_pred C---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc-------------CCHHH-----------HHHH
Confidence 3 57899999999999999886 7888999999999954 23333 5789
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCC------Ceeec-----CChhhHHHHHHHHCCeecc-----CCCCCCCCC
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVRW-----VGGPDIELIAIVTGGRIVP-----RFEELTSEK 293 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~~-----v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~ 293 (315)
++.+.+.|++|||++++|++.++++|.+|+| .++++ +++++|+|||++|||++++ +++++++++
T Consensus 237 l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~ 316 (544)
T PRK12850 237 LEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDM 316 (544)
T ss_pred HHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHH
Confidence 9999999999999999999999999999999 78776 8999999999999999999 689999999
Q ss_pred ceeeeeEEEEE
Q psy9923 294 LGKAGLVRQTQ 304 (315)
Q Consensus 294 lG~~~~v~~~~ 304 (315)
||+|++|++.+
T Consensus 317 LG~~~~v~~~~ 327 (544)
T PRK12850 317 LGRAKRVLITK 327 (544)
T ss_pred cCCCcEEEEEe
Confidence 99999999887
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2.9e-49 Score=388.96 Aligned_cols=263 Identities=26% Similarity=0.435 Sum_probs=237.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~----a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++||+ |+|++++|++|++++||||||++|||++||+++.+++++|+||..|++
T Consensus 94 mi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~ 173 (600)
T PLN03167 94 VLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173 (600)
T ss_pred EEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6889999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.+++.|++++.+++ + +.|.++|.+++++ ++.|++|+++|+.++++ ++. |.+. .
T Consensus 174 G~~~A~~~~~~~L~~~s~~v~----d-~~L~~vA~tS~~~------~~~i~~liaeAv~~Vg~---~g~----i~v~--~ 233 (600)
T PLN03167 174 GIEKTAKALVKELKKMSKEVE----D-SELADVAAVSAGN------NYEVGNMIAEAMSKVGR---KGV----VTLE--E 233 (600)
T ss_pred HHHHHHHHHHHHHHHhcccCC----H-HHHHHHHHHhccC------cHHHHHHHHHHHHHhcc---CCc----EEec--c
Confidence 999999999999999976653 3 5699999999886 68999999999999985 232 5544 5
Q ss_pred CCCcccc-cceeEEEEecCCCCC-------CCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDT-MLVKGVVIDKDFSHP-------QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~dS-~~i~G~vl~~~~~~~-------~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++.+|+ ++++|++|+++|.+| +|++.++||+|+++++. +++++++ .+
T Consensus 234 g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~-------------i~~~~~l-----------~~ 289 (600)
T PLN03167 234 GKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK-------------ITNARDL-----------IG 289 (600)
T ss_pred CCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc-------------cCCHHHH-----------HH
Confidence 8889998 899999999999999 57788999999999873 4667776 56
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHH------hCCCCeeecCC-----hhhHHHHHHHHCCeecc-----CCCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLL------QKQLPAVRWVG-----GPDIELIAIVTGGRIVP-----RFEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~------~~~I~~i~~v~-----~~~l~~ls~~tGa~ii~-----~l~~l~~~ 292 (315)
+++.+.+.++++|+++++|+++++++|. ..++.++++.+ +++|+|||.+|||++++ ++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 6778888999999999999999999999 67788999885 88999999999999999 68899999
Q ss_pred CceeeeeEEEEE-----eee
Q psy9923 293 KLGKAGLVRQTQ-----TMF 307 (315)
Q Consensus 293 ~lG~~~~v~~~~-----~~~ 307 (315)
+||+|++|++++ +|.
T Consensus 370 ~LG~a~~v~~~~~~t~iig~ 389 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGD 389 (600)
T ss_pred HCceeeEEEEecccceeeCC
Confidence 999999999988 775
No 38
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5e-49 Score=385.87 Aligned_cols=262 Identities=24% Similarity=0.405 Sum_probs=234.5
Q ss_pred CcccCCCCeEEecChHHHHhhccc----cChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDV----DHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i----~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|++ +||.|+|++++|++|++++||||||+++||++||+++.+|+++|+||..|++
T Consensus 39 mi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 118 (545)
T PRK12852 39 VIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKR 118 (545)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788999999999999999999999 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|++.++++|++++++++ +.+.+.++|+++.++ ++.+++++++|+..+++. +. |.+..
T Consensus 119 G~~~A~~~~l~~L~~~s~~v~----~~~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~---g~----i~v~~-- 179 (545)
T PRK12852 119 GIDIAVAAVVKDIEKRAKPVA----SSAEIAQVGTISANG------DAAIGKMIAQAMQKVGNE---GV----ITVEE-- 179 (545)
T ss_pred HHHHHHHHHHHHHHHhcccCC----CHHHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC---Cc----eeeec--
Confidence 999999999999999976664 356699999998876 699999999999999852 22 55553
Q ss_pred CCCc-ccccceeEEEEecCCCCCC-------CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKL-EDTMLVKGVVIDKDFSHPQ-------MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~-~dS~~i~G~vl~~~~~~~~-------~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|+.. .++++++|+.|++++.+++ |+..++||+|+++++.+ +++++ +.+
T Consensus 180 g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i-------------~~~~~-----------i~~ 235 (545)
T PRK12852 180 NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL-------------SGLQA-----------MLP 235 (545)
T ss_pred CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc-------------CCHHH-----------HHH
Confidence 7765 6899999999999999987 77888999999988743 34444 478
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhC------CCCeeecCC-----hhhHHHHHHHHCCeecc-----CCCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQK------QLPAVRWVG-----GPDIELIAIVTGGRIVP-----RFEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~------~I~~i~~v~-----~~~l~~ls~~tGa~ii~-----~l~~l~~~ 292 (315)
+++.+.+.|++|||++++|++.|+++|..| +|.++++.+ +++|+|||++|||++++ ++++++++
T Consensus 236 ~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~ 315 (545)
T PRK12852 236 VLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLK 315 (545)
T ss_pred HHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHH
Confidence 999999999999999999999999999987 788888655 99999999999999999 78999999
Q ss_pred CceeeeeEEEEEe
Q psy9923 293 KLGKAGLVRQTQT 305 (315)
Q Consensus 293 ~lG~~~~v~~~~~ 305 (315)
+||+|++|++.+.
T Consensus 316 ~lG~~~~v~~~~~ 328 (545)
T PRK12852 316 MLGRAKKVVIDKE 328 (545)
T ss_pred HCCCCcEEEEEcc
Confidence 9999999999884
No 39
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=5e-49 Score=384.64 Aligned_cols=263 Identities=24% Similarity=0.364 Sum_probs=231.1
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHH----HHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIA----KLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a----~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++||++ +|++++|++|++++||||||++|||++||+++.+|+++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 117 (529)
T CHL00093 38 VLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKR 117 (529)
T ss_pred EEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 78899999999999999999999999998 58888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||+.|.+.+++.|++++.+++ +++.|.++|++++++ ++.+++|+++|+..+++. +. |.+.. .
T Consensus 118 G~~~A~~~~l~~L~~~s~~v~----d~~~L~~VA~ts~~~------~~~l~~lv~eAv~~vg~~---g~----i~~~~-g 179 (529)
T CHL00093 118 GIEKATQYVVSQIAEYARPVE----DIQAITQVASISAGN------DEEVGSMIADAIEKVGRE---GV----ISLEE-G 179 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHhccC------hHHHHHHHHHHHHHhccC---Cc----eeecC-C
Confidence 999999999999999976664 678899999998884 899999999999999852 22 44432 2
Q ss_pred CCCcccccceeEEEEecCCCCCCC---Cc----eeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQM---PK----ELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASM 229 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~---~~----~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~ 229 (315)
++...++++++|++|+++|.+++| |+ .++||+|++++++|++.+ .+ +.++
T Consensus 180 ~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------------~~-----------i~~~ 236 (529)
T CHL00093 180 KSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------------QD-----------LLPI 236 (529)
T ss_pred CccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH------------HH-----------HHHH
Confidence 233456799999999999999987 54 378999999999998641 12 5789
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHH--Hh----CCCCeeecC-----ChhhHHHHHHHHCCeecc-----CCCCCCCCC
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLL--LQ----KQLPAVRWV-----GGPDIELIAIVTGGRIVP-----RFEELTSEK 293 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l--~~----~~I~~i~~v-----~~~~l~~ls~~tGa~ii~-----~l~~l~~~~ 293 (315)
++.+.+.++++||++++|++.++++| ++ ++|.+++++ ++++|+|||.+|||++++ +++++++++
T Consensus 237 l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~ 316 (529)
T CHL00093 237 LEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDL 316 (529)
T ss_pred HHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHH
Confidence 99999999999999999999877766 66 489999988 458899999999999999 799999999
Q ss_pred ceeeeeEEEEE
Q psy9923 294 LGKAGLVRQTQ 304 (315)
Q Consensus 294 lG~~~~v~~~~ 304 (315)
||+|++|++.+
T Consensus 317 LG~~~~v~~~~ 327 (529)
T CHL00093 317 LGQARRIIVTK 327 (529)
T ss_pred CCcceEEEEec
Confidence 99999999865
No 40
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=6.4e-48 Score=377.19 Aligned_cols=259 Identities=24% Similarity=0.389 Sum_probs=230.0
Q ss_pred CcccCCCCeEEecChHHHHhhcccc----ChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVD----HEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~----hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++ ||.|+|++++|++||+++||||||++|||++||+++.+++++|+||..|++
T Consensus 39 ~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~ 118 (546)
T PRK14104 39 VLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKR 118 (546)
T ss_pred EEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHH
Confidence 6788899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|.+.+++.|++++++++ +.+.+.++|+++.++ ++.+++++++|+..+++. +. |.+..
T Consensus 119 G~~~A~~~~~~~L~~~a~~v~----~~~~l~~va~~s~~~------d~~i~~lv~~Av~~vg~~---g~----i~v~~-- 179 (546)
T PRK14104 119 GIDLAVEAVVADLVKNSKKVT----SNDEIAQVGTISANG------DAEIGKFLADAMKKVGNE---GV----ITVEE-- 179 (546)
T ss_pred HHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHhcC------chHHHHHHHHHHHHhccC---Cc----eeeEe--
Confidence 999999999999999977664 346789999998887 488999999999999852 32 66654
Q ss_pred CCCc-ccccceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKL-EDTMLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~-~dS~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
+++. .++++++|++|++++.+|+| +..+++|+|++.+.. +++++++ .+
T Consensus 180 ~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~-------------i~~~~~i-----------~~ 235 (546)
T PRK14104 180 AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK-------------LSSLNEL-----------LP 235 (546)
T ss_pred cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh-------------hcCHHHH-----------HH
Confidence 3445 47899999999999999987 566789999998732 4556554 78
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHh------CCCCeeecCC-----hhhHHHHHHHHCCeeccC-----CCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQ------KQLPAVRWVG-----GPDIELIAIVTGGRIVPR-----FEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~------~~I~~i~~v~-----~~~l~~ls~~tGa~ii~~-----l~~l~~~ 292 (315)
+++.+.+.|+||||++++|++.|+++|.. .+|.++++++ +++|+|||.+|||+++++ +++++++
T Consensus 236 ~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~ 315 (546)
T PRK14104 236 LLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQ 315 (546)
T ss_pred HHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHH
Confidence 99999999999999999999999999995 4677887665 899999999999999999 8999999
Q ss_pred CceeeeeEEE
Q psy9923 293 KLGKAGLVRQ 302 (315)
Q Consensus 293 ~lG~~~~v~~ 302 (315)
+||+|++|++
T Consensus 316 ~LG~a~~v~~ 325 (546)
T PRK14104 316 MLGRAKKVMI 325 (546)
T ss_pred HCCceeEEEE
Confidence 9999999996
No 41
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=5.2e-35 Score=261.91 Aligned_cols=185 Identities=22% Similarity=0.299 Sum_probs=169.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccc--cCCCCcc-ceEEEeccCCCcccccceeEEEEecCCCCCCCCceeeeceEEEE
Q psy9923 116 SKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFE-LIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAIL 192 (315)
Q Consensus 116 ~k~~~~~~~~ls~l~~~a~~~v~~~~--~~~~~~~-~I~i~~~~G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll 192 (315)
......|.+.|++++++|+..+.+.. ...+|++ +|+|++++||+++||++++|++++++++++.||++++||||+++
T Consensus 13 ~~~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll 92 (261)
T cd03334 13 ISNDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLL 92 (261)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEE
Confidence 33456789999999999999986431 2357775 59999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHH
Q psy9923 193 TCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 272 (315)
Q Consensus 193 ~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~ 272 (315)
++||++++++. ++++++++.++|++++.+++++|.+.|++||||+|+|++.|++||.++||++++++++++|+
T Consensus 93 ~~~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~ 165 (261)
T cd03334 93 QGPLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLE 165 (261)
T ss_pred eeeeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHH
Confidence 99999998763 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCeeccCC-CCCCCCCceeeeeEEEEEeee
Q psy9923 273 LIAIVTGGRIVPRF-EELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 273 ~ls~~tGa~ii~~l-~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|||++|||++++++ ++++++++|+|++|+++++|.
T Consensus 166 rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~ 201 (261)
T cd03334 166 RISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVE 201 (261)
T ss_pred HHHHHhCCEEecChhhhcCcccCcCcceEEEEEecC
Confidence 99999999999994 589999999999999999984
No 42
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.97 E-value=5.1e-31 Score=229.49 Aligned_cols=161 Identities=41% Similarity=0.586 Sum_probs=152.4
Q ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCcccccceeEEEEecCCCCCCCCce
Q psy9923 104 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKE 183 (315)
Q Consensus 104 ~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~~dS~~i~G~vl~~~~~~~~~~~~ 183 (315)
+.|.++|+|+++||+ +.|.+.+++++++|+..+++... .++.++|+|++++||+++||++++|++|++++.+++||++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~ 79 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKR 79 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeE
Confidence 468999999999999 99999999999999999986332 4567789999999999999999999999999999999999
Q ss_pred eeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCee
Q psy9923 184 LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAV 263 (315)
Q Consensus 184 ~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i 263 (315)
++||||++++++|++ +|+++++|++.++++|.++||.++
T Consensus 80 ~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v 118 (209)
T cd03333 80 LENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAV 118 (209)
T ss_pred cCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEE
Confidence 999999999999987 999999999999999999999999
Q ss_pred ecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 264 RWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 264 ~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+++++++|+|||++|||++++++++++++++|+|++|+++++|.
T Consensus 119 ~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~ 162 (209)
T cd03333 119 RRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE 162 (209)
T ss_pred EeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC
Confidence 99999999999999999999999999999999999999999975
No 43
>KOG0356|consensus
Probab=99.97 E-value=5.1e-31 Score=246.13 Aligned_cols=266 Identities=25% Similarity=0.358 Sum_probs=229.8
Q ss_pred ccCCCCeEEecChHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy9923 3 VSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 78 (315)
Q Consensus 3 ~~~~g~~~iTnDG~tIl~~l~i~hP~----a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~ 78 (315)
..+.|.|.|||||.|+.+++.+.++. |+++++++.+.++.+||||||+++||+++..++.+-+.+|.+|..+.+|.
T Consensus 54 eq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi 133 (550)
T KOG0356|consen 54 EQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGI 133 (550)
T ss_pred ccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhH
Confidence 35689999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCC
Q psy9923 79 ELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 79 ~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~ 158 (315)
..|.+...+.|.++|+++. ..+++.++|..+.+| +..+++++.+|+.++++ .++ |.|+. |.
T Consensus 134 ~~av~~vv~~L~k~sk~Vt----t~eeIaqVAtiSAng------D~~ig~li~~a~~kvG~---~GV----Itv~~--gk 194 (550)
T KOG0356|consen 134 MLAVDAVVDELKKMSKPVT----TPEEIAQVATISANG------DKEIGNLISDAMKKVGR---KGV----ITVKD--GK 194 (550)
T ss_pred HHHHHHHHHHHHHhCCCCC----CHHHHHHHHhhhcCC------cHHHHHHHHHHHHHhCc---CCe----EEeec--CC
Confidence 9999999999999988876 688999999999888 88999999999999995 566 88764 88
Q ss_pred Ccccc-cceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q psy9923 159 KLEDT-MLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237 (315)
Q Consensus 159 ~~~dS-~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~ 237 (315)
+..|. ++++|+-|+++|.+|+|.+.-+..+ .-|..++-.. ++.++++++++ .+.++......
T Consensus 195 t~~delev~eGmkfdrGyiSPyfi~~~k~~~-~e~e~~~~ll-----~~kki~~v~~i-----------vp~LE~A~~~~ 257 (550)
T KOG0356|consen 195 TLEDELEVIEGMKFDRGYISPYFITSSKKQK-VEFENALLLL-----SEKKISSVQSI-----------VPALELALAKR 257 (550)
T ss_pred ccccchhhhhcccccccccCccccccchhhh-hhhhhhhhhh-----hhhhhhHHHHH-----------hHHHHHhhhcc
Confidence 88887 8999999999999999976654333 1222222211 55567777776 78999999999
Q ss_pred CcEEEecCCCCHHHHHHHHhCCCCee-----------ecCChhhHHHHHHHHCCeeccC------CCCCCCCCceeeeeE
Q psy9923 238 ATLAICQWGFDDEANHLLLQKQLPAV-----------RWVGGPDIELIAIVTGGRIVPR------FEELTSEKLGKAGLV 300 (315)
Q Consensus 238 ~~lVi~~~~I~~~al~~l~~~~I~~i-----------~~v~~~~l~~ls~~tGa~ii~~------l~~l~~~~lG~~~~v 300 (315)
.|+++++.+|+.++|..|.-|+..+. ..-++..+.+++.+|||.++.. +++.+.++||+|.++
T Consensus 258 ~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~ev 337 (550)
T KOG0356|consen 258 RPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEV 337 (550)
T ss_pred CceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeE
Confidence 99999999999999999999887643 3447888999999999999983 556777899999999
Q ss_pred EEEE
Q psy9923 301 RQTQ 304 (315)
Q Consensus 301 ~~~~ 304 (315)
.+..
T Consensus 338 vvtk 341 (550)
T KOG0356|consen 338 VVTK 341 (550)
T ss_pred EEec
Confidence 8765
No 44
>KOG0357|consensus
Probab=99.94 E-value=1.3e-27 Score=210.99 Aligned_cols=170 Identities=73% Similarity=1.144 Sum_probs=160.1
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
|++++.|++++|||| .|++++++...+..|+.++|||||.+++|++.+++++..++.+|+||..|.+||..
T Consensus 56 ~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~ 126 (400)
T KOG0357|consen 56 MLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEK 126 (400)
T ss_pred ccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhh
Confidence 467788999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|.+.+.+.|++.+.+++
T Consensus 127 ~~~~av~~l~~i~~~~e--------------------------------------------------------------- 143 (400)
T KOG0357|consen 127 AKVVAVEHLDEISDPFE--------------------------------------------------------------- 143 (400)
T ss_pred HHHhhhhhhhhhccccc---------------------------------------------------------------
Confidence 99999998887744331
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
+..+++++++.|+++
T Consensus 144 -----------------------------------------------------------------f~emi~~vK~~ga~l 158 (400)
T KOG0357|consen 144 -----------------------------------------------------------------FEEMIQQIKETGANL 158 (400)
T ss_pred -----------------------------------------------------------------HHHHHHHHHhhCCcE
Confidence 357889999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
++|+|++||+|-++|.+|+..+++||.-.++|-||.+|||+|+++|+++++++||+|+.|+|..||-
T Consensus 159 ~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgt 225 (400)
T KOG0357|consen 159 AICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGT 225 (400)
T ss_pred EEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999884
No 45
>KOG0230|consensus
Probab=99.85 E-value=5.6e-21 Score=195.22 Aligned_cols=179 Identities=24% Similarity=0.332 Sum_probs=161.8
Q ss_pred chhHHHHHHHHHHHHHHhccccc--CCCCc-cceEEEeccCCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCC
Q psy9923 120 NKCHRQMAEIAVNAVMAVADLEK--RDVNF-ELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPF 196 (315)
Q Consensus 120 ~~~~~~ls~l~~~a~~~v~~~~~--~~~~~-~~I~i~~~~G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L 196 (315)
..|.+.+..|+++|+..+.+... +.+|. ++|+|+++.||+..||+++.|+++.++.+++.|+++.++|||+++.++|
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 46889999999999999987532 34565 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHH
Q psy9923 197 EPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAI 276 (315)
Q Consensus 197 ~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~ 276 (315)
++++... .+.| ++...++|.++++.++.+|...+++++++.++|++.|+++|...+|.++.++++..|+|||+
T Consensus 411 eyqrisn----~lsS---~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR 483 (1598)
T KOG0230|consen 411 EYQRISN----QLSS---IETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISR 483 (1598)
T ss_pred hhhhhhc----cccc---hHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHH
Confidence 9986543 2344 44455668999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCeeccCCCCCCCCCceeeeeEEEEEe
Q psy9923 277 VTGGRIVPRFEELTSEKLGKAGLVRQTQT 305 (315)
Q Consensus 277 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~~ 305 (315)
+|||.|+++++.++...+|+|+.|+++++
T Consensus 484 ~tga~I~~siDslt~~klg~C~~F~v~~~ 512 (1598)
T KOG0230|consen 484 CTGADIVPSVDSLTSQKLGYCELFRVENY 512 (1598)
T ss_pred HhcCceecchhhhhccccCCCccHhhhhh
Confidence 99999999999999999999999998765
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=83.63 E-value=4.9 Score=31.65 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
.+.+.+++.|+++|+|+ .+.+.+.+.|..+||.+..-.+.+.=+-|.....+.
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 46788999999999995 899999999999999998877744434444444443
No 47
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=82.90 E-value=3.8 Score=30.02 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV 266 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v 266 (315)
.+.+.+...++++|+| +.|.+.+...|.++||.++...
T Consensus 44 ~~~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEEST
T ss_pred hHHHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcC
Confidence 4556667789999999 5799999999999999999873
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=80.33 E-value=3.9 Score=30.54 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHH
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIEL 273 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ 273 (315)
...+.+...++++|+|. .+.+.+.+.|.++||.++.... ..++.
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 45666777999999995 7999999999999999997765 34443
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=72.11 E-value=8.8 Score=28.45 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG 267 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 267 (315)
...+.+...++++|+|. .+.+.+...|.++||.++....
T Consensus 52 ~~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 52 LAARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 34566677899999996 6999999999999999987665
No 50
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=67.61 E-value=17 Score=28.33 Aligned_cols=56 Identities=9% Similarity=0.220 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCeeccCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGRIVPRF 286 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ii~~l 286 (315)
..++.+ .++++||| .+|.+.+...|.+.||.++..-. .+.|+++.+..-+++-+.+
T Consensus 56 ~~~~~l--~~c~vvi~-~~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~~~w~ 115 (119)
T TIGR02663 56 PKIEAL--KDCAILYC-LAIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNPPPWL 115 (119)
T ss_pred HHHHHh--CCCcEEEE-hhcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCCCHHH
Confidence 344444 59999999 59999999999999999997332 6778888888877665544
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=58.66 E-value=53 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
++-++.+.+-.+.+|+.++++++... .++.++||..+.--++.+| .++||-.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~L---GkAcgi~ 74 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHAL---GKHVGIN 74 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCCC
Confidence 45667777778899999999998876 4667899988776666554 5555543
No 52
>PRK07283 hypothetical protein; Provisional
Probab=58.65 E-value=48 Score=24.84 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGG 280 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa 280 (315)
...+.+.+-.+.+||.+.+.++... +.+..++|.++...++ +.|..++|=
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 3456677777899999999999888 6666789998776655 568888884
No 53
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=57.09 E-value=27 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=27.2
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecCC
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVG 267 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 267 (315)
.++++|++ +++.+.+...|.++||.++..-.
T Consensus 64 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 69999999 59999999999999999985544
No 54
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=54.39 E-value=39 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecCC
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVG 267 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 267 (315)
.++++||| ++|.+.+...|.++||.++....
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 58999988 59999999999999999987654
No 55
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=51.91 E-value=48 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeecc
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~ 284 (315)
+.++.+.+.++++|++..+.... ...|.+.||.++..+..-..-+-+.-.|+..+.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 56788888999999998887766 589999999999888765555667778888774
No 56
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=51.66 E-value=64 Score=25.31 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-H----HHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-A----NHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-a----l~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..++.+.+-.+.+||.+.++++. . ..++.+++|..+..-++ ++|..++|-.
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk---~eLG~a~Gk~ 92 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK---KDLGKAAGLE 92 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHhCCC
Confidence 45566666678999999999873 2 34578899997666655 5677777754
No 57
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=50.41 E-value=67 Score=24.98 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-H----HHHHHhCCCCeeecCChhhHHHHHHHHCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-A----NHLLLQKQLPAVRWVGGPDIELIAIVTGG 280 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-a----l~~l~~~~I~~i~~v~~~~l~~ls~~tGa 280 (315)
..++.|.+-.+.+|+.+.++++. . .+++.+++|..+..-++ ++|.+++|-
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk---~eLG~a~Gk 87 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK---EDLGAAAGL 87 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 44566666678999999999774 3 45678999997776666 566777775
No 58
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=50.39 E-value=48 Score=29.82 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=41.8
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeee-cC-----ChhhHHHHHHHHCCee
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR-WV-----GGPDIELIAIVTGGRI 282 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~-~v-----~~~~l~~ls~~tGa~i 282 (315)
-+|.|.+.+++|||.....++...+.|.+.||.++. .. -.+.++.+++++|..-
T Consensus 83 n~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~~ 142 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGREE 142 (289)
T ss_pred CHHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCHH
Confidence 357888899999999888888888999999987753 11 2456888888888553
No 59
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.33 E-value=57 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.5
Q ss_pred HHHHHHHCCCcEEEecCCCCHH-HHHHHHhCCCCeeecC--C----hhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDE-ANHLLLQKQLPAVRWV--G----GPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~-al~~l~~~~I~~i~~v--~----~~~l~~ls~~tGa~ 281 (315)
-+|+|.+.+++|||....-++. ..+.|.+.|+.++..- . .+.++.++.++|-.
T Consensus 49 n~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 49 DLERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred CHHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 4578888999999987655454 4888999999765421 1 45588899999876
No 60
>PRK07714 hypothetical protein; Provisional
Probab=48.88 E-value=87 Score=23.46 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
...+.+.+-.+.+||.+.+.++.... ++..+++.++...++ +.|..++|-..
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~~ 80 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKDE 80 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCCc
Confidence 45566777788999999999987654 446789998876665 66778888553
No 61
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=48.71 E-value=54 Score=27.12 Aligned_cols=53 Identities=28% Similarity=0.234 Sum_probs=38.0
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeee-cCC------hhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR-WVG------GPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~-~v~------~~~l~~ls~~tGa~ 281 (315)
-++.|.+.+++|||......+...+.|.+.|+.++. ... .+.++.+++++|-.
T Consensus 52 n~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 52 NVEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred CHHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 347778889999998766666677889999996543 221 34577888888853
No 62
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=48.63 E-value=89 Score=22.69 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
..++.+.+-.+.+||++.+.++.... ++..++|.+...-++ +.|.+++|-.+
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~v 70 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGIDV 70 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCcc
Confidence 45577777889999999999987664 456789999654444 66777887553
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=48.28 E-value=70 Score=29.41 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeecc
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~ 284 (315)
+.++.+.+.++++|.+..+..+...+.+.++|+.++-.+..-+.-+-+.-.|+..+.
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE
Confidence 466777889999999888888778899999999998877655555556667887773
No 64
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=46.45 E-value=55 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC---C----hhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV---G----GPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v---~----~~~l~~ls~~tGa~ 281 (315)
-+|+|...+++|||....-.+...+.|.+.||.++..- + .+.++.+++++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 46888899999999876556667889999999986532 1 25567888888864
No 65
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=45.98 E-value=1e+02 Score=22.24 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
+..++.|.+-.+.+|+.+.+.++... +++.+++|.++.--++ +.|..++|-.+
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~~ 73 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIEV 73 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCCc
Confidence 34557777778899999999999765 4568899998766555 66777887543
No 66
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=45.91 E-value=85 Score=24.07 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHH----HHHHHhCCCCeeec-CChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEA----NHLLLQKQLPAVRW-VGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~a----l~~l~~~~I~~i~~-v~~~~l~~ls~~tGa~ 281 (315)
..++.+.+-.+.+||++.+.++.. .+++..++|.++.. -.+ +.|.+++|=.
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCCc
Confidence 455677777889999999998874 56678899998765 444 5778888844
No 67
>PRK06683 hypothetical protein; Provisional
Probab=45.13 E-value=1e+02 Score=22.27 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
..++.|.+-.+.+||++.+.++...+ ++..++|.++..-++ +.|..++|-..
T Consensus 18 ~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 18 RTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 45577777788999999999987664 467899998765544 66778888543
No 68
>PF12846 AAA_10: AAA-like domain
Probab=41.82 E-value=64 Score=28.58 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHH-----HHHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEA-----NHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~a-----l~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
+.+++....+.|+.+++....+++.. -..+..-+...+.++...+.+.+++..|-++
T Consensus 242 ~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~~ 303 (304)
T PF12846_consen 242 LDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLTP 303 (304)
T ss_pred hhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcCC
Confidence 46788888999999999999999988 7899999999999999988888999888653
No 69
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=39.89 E-value=1.4e+02 Score=22.73 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCeeecCChhhHHHHHHHHCCeec
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRWVGGPDIELIAIVTGGRIV 283 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii 283 (315)
...+.+.+-.+.+||.+.+.++.-.. ++..+++.++...++ +.|..++|=..+
T Consensus 24 ~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~---~eLg~a~Gk~~~ 80 (104)
T PRK05583 24 KCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSK---EELGNAIGRDEI 80 (104)
T ss_pred HHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH---HHHHHHhCCCCe
Confidence 34566777778999999999887654 445679998887666 557788885543
No 70
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=39.42 E-value=41 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChh
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP 269 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~ 269 (315)
+++.|....|+++|++...-...+.++-.+.||..+..++..
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 677888889999999999999999999999999988776643
No 71
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=38.21 E-value=2.1e+02 Score=27.04 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=53.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCC-eeecCChhhHHHHHHHHCC--eeccCC
Q psy9923 210 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP-AVRWVGGPDIELIAIVTGG--RIVPRF 286 (315)
Q Consensus 210 ~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~-~i~~v~~~~l~~ls~~tGa--~ii~~l 286 (315)
=|++++++| -+-+++++++.+++.|..+++...+-....+..+.+-+.. ++......++....+..|. .++..+
T Consensus 244 lsp~~f~ef---~~P~~k~i~~~i~~~g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~~~g~~~~i~GNl 320 (378)
T cd03308 244 LRPKQFEKF---YWPSFKKVVEGLAARGQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKEKLGDKKCIAGGF 320 (378)
T ss_pred cCHHHHHHH---HHHHHHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHHHhCCCEEEEcCC
Confidence 356665444 4667888888988888777777666666678888887765 4444445788888889984 555555
Q ss_pred CC
Q psy9923 287 EE 288 (315)
Q Consensus 287 ~~ 288 (315)
+.
T Consensus 321 ~p 322 (378)
T cd03308 321 PT 322 (378)
T ss_pred CC
Confidence 43
No 72
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=37.87 E-value=1.6e+02 Score=22.04 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecC-ChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWV-GGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v-~~~~l~~ls~~tGa~ 281 (315)
..++.+.+..+.+||.+.+.++... +++.+++|.++... ++ +.|.+++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCCC
Confidence 4557777778999999999987655 45678999987764 55 5677888843
No 73
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.74 E-value=2.7e+02 Score=24.11 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC-ChhhHHHHHHHHCCeecc
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV-GGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v-~~~~l~~ls~~tGa~ii~ 284 (315)
+.++...+.|++.+++ .+.++.+.+++.++|+..+-.+ ..+++.+- .--|++++.
T Consensus 79 ~~~~~a~~aGA~Fivs-P~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A-~~~Gad~vk 134 (213)
T PRK06552 79 VTARLAILAGAQFIVS-PSFNRETAKICNLYQIPYLPGCMTVTEIVTA-LEAGSEIVK 134 (213)
T ss_pred HHHHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEECCcCCHHHHHHH-HHcCCCEEE
Confidence 3457788889998885 6999999999999999998654 55555444 458888875
No 74
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.34 E-value=73 Score=27.43 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCeecc
Q psy9923 220 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGRIVP 284 (315)
Q Consensus 220 ~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ii~ 284 (315)
++|++++.+.++.+.+...++.++=...++.+.....++|...+.++. .+.+-.++.-.|+.++-
T Consensus 53 ~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~ 121 (210)
T PF00809_consen 53 EEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVL 121 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEE
Confidence 357788999999999755567777778888888888777998887664 45677777778988775
No 75
>PRK04247 hypothetical protein; Provisional
Probab=36.52 E-value=87 Score=27.73 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=26.6
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeee
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVR 264 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~ 264 (315)
..+.-|+++.+|++.|..+|.++|+.++.
T Consensus 204 ~~VRGilvAp~i~~~A~~ll~~~Gle~~~ 232 (238)
T PRK04247 204 DKVRGILVAPSITDRARRLLEKEGLEFVK 232 (238)
T ss_pred CCcEEEEECCcCCHHHHHHHHHcCCeEEE
Confidence 56789999999999999999999999875
No 76
>PRK03298 hypothetical protein; Provisional
Probab=36.24 E-value=88 Score=27.32 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHC----CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhh
Q psy9923 227 ASMVDKVKAT----GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 270 (315)
Q Consensus 227 ~~~~~~i~~~----~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~ 270 (315)
.+.++.+... .+.=||++.+|.+.|..++.++|+.++. ++.+.
T Consensus 166 ~RYve~l~rd~~~~~VRGIlvAp~It~~Ar~Ll~drGle~v~-ld~~~ 212 (224)
T PRK03298 166 TRYLELLNRDPLLAPVRGVFAAQEIKPQARTLAEDRGIRCVT-LDYDA 212 (224)
T ss_pred HHHHHHHhhCcCcCCceEEEECCcCCHHHHHHHHHcCCeEEE-cCHHH
Confidence 3444555432 2445899999999999999999999865 44333
No 77
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=35.97 E-value=60 Score=23.79 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHH-----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEAN-----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al-----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
.+..+.+.+-.+.+|+.+.++++... .++.+++|.++..-++ +.|.+++|-.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~---~eLG~~~g~~ 77 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSK---EELGRACGKK 77 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHH---HHHHHHTTSS
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCH---HHHHHHHCCC
Confidence 45667777778899999999987543 4678899999776654 6677777765
No 78
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=35.83 E-value=92 Score=27.02 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=34.5
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC----ChhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV----GGPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v----~~~~l~~ls~~tGa~ 281 (315)
-+|+|...+++|||+.....+ ..+.|.+.+..++... -.+.++.+++++|-.
T Consensus 58 ~~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 58 NLEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred CHHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 447788889999998776555 6677777664433221 256677777777754
No 79
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=35.19 E-value=51 Score=29.61 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChh
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP 269 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~ 269 (315)
.+++.|....|+++|++...-...+.++-.+.||..+..++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 3678889999999999999999999999999999988776543
No 80
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=33.42 E-value=1.3e+02 Score=26.57 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=36.8
Q ss_pred HHHHHHHCCCcEEEecCC-CCHHHHHHHHhCCCCeeecC--C----hhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWG-FDDEANHLLLQKQLPAVRWV--G----GPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~~v--~----~~~l~~ls~~tGa~ 281 (315)
-+|++.+.+++||+...+ -.....+.|.+.||.++.-- + .+.++.+++++|-.
T Consensus 64 n~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (260)
T PRK03379 64 NLERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQP 123 (260)
T ss_pred CHHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCCH
Confidence 347788889999998543 34567788899999876531 1 34567777777743
No 81
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=32.87 E-value=35 Score=26.91 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCC--CHHHHHHHHhCCCCeee
Q psy9923 214 DYKELRKYEQEKFASMVDKVKATGATLAICQWGF--DDEANHLLLQKQLPAVR 264 (315)
Q Consensus 214 ~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I--~~~al~~l~~~~I~~i~ 264 (315)
++.-+..-..+..++.++++.+.++++||++.+. ++...+.+.++++.+++
T Consensus 58 E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~ 110 (127)
T PF02603_consen 58 ESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLR 110 (127)
T ss_dssp HHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEE
T ss_pred HHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEE
Confidence 3444444444455778899999999988887766 56777899999999876
No 82
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=32.83 E-value=53 Score=20.60 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh
Q psy9923 58 LEQAEHLLDKGIHPIRIADGFELAAQCAVKHLE 90 (315)
Q Consensus 58 l~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~ 90 (315)
.+++.+|.+.|.+..+|.+-+..+..-+..+|+
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 467788889998888888877777666666654
No 83
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=32.68 E-value=2.6e+02 Score=25.90 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEecCCCCHHHHHHHHhCCCCeeecCChh-hHHHHHHHHCCe--eccCC
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKAT-GATLAICQWGFDDEANHLLLQKQLPAVRWVGGP-DIELIAIVTGGR--IVPRF 286 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~-~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~-~l~~ls~~tGa~--ii~~l 286 (315)
|++++++| -.-+++++++.+++. +..+++...+-....+..+.+.|+-++.---.. ++..+.+..|.+ +...+
T Consensus 188 Spe~f~ef---v~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNl 264 (321)
T cd03309 188 SPATFREF---ILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAI 264 (321)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCC
Confidence 45665444 355677888888877 555555444444456777888888887644443 888888999963 44444
Q ss_pred C
Q psy9923 287 E 287 (315)
Q Consensus 287 ~ 287 (315)
+
T Consensus 265 D 265 (321)
T cd03309 265 D 265 (321)
T ss_pred C
Confidence 3
No 84
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=83 Score=26.86 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCC----CCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeE
Q psy9923 225 KFASMVDKVKATGATLAICQWGFDDEANHLLLQKQ----LPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300 (315)
Q Consensus 225 ~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~----I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v 300 (315)
.+++.++.+++.++++++++.+.++..-.+|..-. |-++..++.++-- ..-|-. ++-....+..|+|+.-
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~i---h~dg~h---~i~~~~ds~fG~dK~~ 150 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYI---HIDGQH---SIKYTDDSQFGHDKSS 150 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceE---cCCCce---eeecCCccccCCCcch
Confidence 46889999999999999999999888877776544 6666655432200 000000 1122233567776665
Q ss_pred EEEEeeeeccc
Q psy9923 301 RQTQTMFKFKK 311 (315)
Q Consensus 301 ~~~~~~~~~~~ 311 (315)
.+.....+++.
T Consensus 151 vI~~l~e~~e~ 161 (220)
T COG4359 151 VIHELSEPNES 161 (220)
T ss_pred hHHHhhcCCce
Confidence 55554444443
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=32.39 E-value=55 Score=29.28 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=48.2
Q ss_pred eeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHh-----CC
Q psy9923 185 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQ-----KQ 259 (315)
Q Consensus 185 ~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~-----~~ 259 (315)
.+|.++++|.|+.- +...+... +.++++.+.+.|.-++++.-+++.... ++.+ ++
T Consensus 156 ~~p~lllLDEP~~g--------vD~~~~~~-----------i~~lL~~l~~eg~tIl~vtHDL~~v~~-~~D~vi~Ln~~ 215 (254)
T COG1121 156 QNPDLLLLDEPFTG--------VDVAGQKE-----------IYDLLKELRQEGKTVLMVTHDLGLVMA-YFDRVICLNRH 215 (254)
T ss_pred cCCCEEEecCCccc--------CCHHHHHH-----------HHHHHHHHHHCCCEEEEEeCCcHHhHh-hCCEEEEEcCe
Confidence 48999999999743 22223333 478999999999999999988876543 3322 22
Q ss_pred CCeeecC-ChhhHHHHHHHHCCeec
Q psy9923 260 LPAVRWV-GGPDIELIAIVTGGRIV 283 (315)
Q Consensus 260 I~~i~~v-~~~~l~~ls~~tGa~ii 283 (315)
+.+.... ....-+.+.++.|+...
T Consensus 216 ~~~~G~~~~~~~~~~l~~~~g~~~~ 240 (254)
T COG1121 216 LIASGPPEEVLTEENLEKAFGGSLA 240 (254)
T ss_pred eEeccChhhccCHHHHHHHhCccch
Confidence 2222221 12222457777776554
No 86
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.59 E-value=1.9e+02 Score=25.73 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChh---hHHHHHHHHCCeecc
Q psy9923 221 YEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP---DIELIAIVTGGRIVP 284 (315)
Q Consensus 221 ~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~---~l~~ls~~tGa~ii~ 284 (315)
.|++++.+.++.+.+. .++.++-...++.++....+.|.-.+..++-. ++-.++.-.|+.++-
T Consensus 58 ~E~~rl~~~v~~~~~~-~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 58 EELNRVVPVIKALRDQ-PDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 4677889999998764 13446777889999988888898888766544 366777777877775
No 87
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=31.44 E-value=1.3e+02 Score=27.77 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=42.6
Q ss_pred HHHHHHHHHHCCCcEEEecCCCC-HHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeec
Q psy9923 226 FASMVDKVKATGATLAICQWGFD-DEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 283 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~-~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii 283 (315)
+.+.++.+.+.++++|.+.-+.. +...+.+.++|+.++-.+..-.--+.+.-.|+..+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~i 160 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAI 160 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEE
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEE
Confidence 56778888888999998887877 88889999999999988865444455666787766
No 88
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.23 E-value=1e+02 Score=23.75 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCc-EEEecCCCCHHHHHHHHhCCCCeee
Q psy9923 227 ASMVDKVKATGAT-LAICQWGFDDEANHLLLQKQLPAVR 264 (315)
Q Consensus 227 ~~~~~~i~~~~~~-lVi~~~~I~~~al~~l~~~~I~~i~ 264 (315)
.+.++.+.+.|+. +++..+.-++.+..++.++|+.++.
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEe
Confidence 5778888888886 5566677788888999999998774
No 89
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.14 E-value=1.9e+02 Score=25.00 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCee-ecCChhhHHHHHHHHCCeeccC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAV-RWVGGPDIELIAIVTGGRIVPR 285 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i-~~v~~~~l~~ls~~tGa~ii~~ 285 (315)
.++...+.|++.+++- +.++...+++.++++..+ .....+++.. +.-.|+.++--
T Consensus 79 ~a~~a~~aGA~FivsP-~~~~~vi~~a~~~~i~~iPG~~TptEi~~-a~~~Ga~~vKl 134 (212)
T PRK05718 79 QLAQAIEAGAQFIVSP-GLTPPLLKAAQEGPIPLIPGVSTPSELML-GMELGLRTFKF 134 (212)
T ss_pred HHHHHHHcCCCEEECC-CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEEE
Confidence 3477788899998885 789999999999999999 6677777665 66789888753
No 90
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=30.48 E-value=76 Score=20.59 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCChhHHHH
Q psy9923 56 ALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 56 ~ll~~~~~li~~gi~p~~i~~ 76 (315)
+-|+-+.+|++.|++|..+..
T Consensus 22 etL~ici~L~e~GVnPeaLA~ 42 (48)
T PF12554_consen 22 ETLSICIELCENGVNPEALAA 42 (48)
T ss_pred HHHHHHHHHHHCCCCHHHHHH
Confidence 334556778888888865543
No 91
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=29.74 E-value=33 Score=30.56 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCC
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP 261 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~ 261 (315)
..+++.+.+.++|+++.+.++.|.....|.+++..
T Consensus 96 ~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~ 130 (246)
T PF05822_consen 96 EEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVF 130 (246)
T ss_dssp HHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999998654
No 92
>PRK10824 glutaredoxin-4; Provisional
Probab=29.26 E-value=2.7e+02 Score=21.57 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCcEEEecCC--------CCHHHHHHHHhCCCCe--eecC-ChhhHHHHHHHHCCeeccCC
Q psy9923 227 ASMVDKVKATGATLAICQWG--------FDDEANHLLLQKQLPA--VRWV-GGPDIELIAIVTGGRIVPRF 286 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~--------I~~~al~~l~~~~I~~--i~~v-~~~~l~~ls~~tGa~ii~~l 286 (315)
...++.+.+.++-+|+ .++ .+..|.++|...|+.. +.-. +.+.-+.+...||.+-++.+
T Consensus 5 ~~~v~~~I~~~~Vvvf-~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQI 74 (115)
T PRK10824 5 IEKIQRQIAENPILLY-MKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQL 74 (115)
T ss_pred HHHHHHHHhcCCEEEE-ECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 5677788777754455 454 7888999999999763 2211 34455677788888777653
No 93
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=28.50 E-value=1.3e+02 Score=21.88 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHcC-CChhHHHHHHHHHHH
Q psy9923 53 LAGALLEQAEHLLDKG-IHPIRIADGFELAAQ 83 (315)
Q Consensus 53 La~~ll~~~~~li~~g-i~p~~i~~g~~~a~~ 83 (315)
+...+++++.+++++| .+|.+|=++++.++.
T Consensus 7 l~~~~~~ea~~l~~egvas~~~ID~~~~~~~G 38 (97)
T PF00725_consen 7 LLAALLNEAARLVEEGVASPEDIDRAMRYGLG 38 (97)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 4567889999999999 688887667666543
No 94
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=28.46 E-value=2.6e+02 Score=21.74 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHH-----HHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEA-----NHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~a-----l~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...++.|.+-.+.+|+.+.+++|.- ..+|.++||..+.--++.+ |.+++|-.
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~---LG~a~g~~ 89 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE---LGKAVGKE 89 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCCC
Confidence 4555666666789999999999443 2567779999888777755 55556654
No 95
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=27.76 E-value=3.3e+02 Score=24.72 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHC--CeeccCCC
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTG--GRIVPRFE 287 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tG--a~ii~~l~ 287 (315)
|++++. +.-..+++++++.++..|..+++-..+-....+.++.+.|+-++..-...++..+.+..| ..+...++
T Consensus 198 sp~~f~---e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id 273 (330)
T cd03465 198 SPEDFK---EFSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLD 273 (330)
T ss_pred CHHHHH---HHhhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcC
Confidence 455554 344566778888888877766653333344668888888888776554558888888888 45555554
No 96
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=27.70 E-value=77 Score=28.58 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChh
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGP 269 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~ 269 (315)
+++.|....|++++++-......+.+...+.||..+..++-.
T Consensus 212 EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~ 253 (266)
T COG1526 212 EMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGG 253 (266)
T ss_pred HHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCC
Confidence 688899999999999999999999999999999998877643
No 97
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.24 E-value=1.9e+02 Score=24.78 Aligned_cols=52 Identities=23% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHCCCcEEEecCC-CCHHHHHHHHhCCCCeeec--C-C----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWG-FDDEANHLLLQKQLPAVRW--V-G----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~~--v-~----~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++||+.... .++...+.|.+.||.++.. . . .+.++.++.++|-.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~~~lg~i~g~e 110 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVPSTPTLDGLLTKIRQVAQALGVP 110 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 47888889999998664 4556778899999987542 1 2 44566777777764
No 98
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=27.17 E-value=3.1e+02 Score=25.15 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC--CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCC--eeccCC
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKAT--GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGG--RIVPRF 286 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~--~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa--~ii~~l 286 (315)
|++++++| -.-+++++++.+++. +++++...++-. ..+..+.+.++.++..-...++......+|. .+...+
T Consensus 205 sp~~f~ef---~~P~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni 280 (335)
T cd00717 205 SPEDFEEF---VLPYLKRIIEEVKKRLPGVPVILFAKGAG-GLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNL 280 (335)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHhCCCCCEEEEcCCCH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCC
Confidence 46665444 456678888888887 566765445554 5688888888877654445678888888884 444444
Q ss_pred C
Q psy9923 287 E 287 (315)
Q Consensus 287 ~ 287 (315)
+
T Consensus 281 ~ 281 (335)
T cd00717 281 D 281 (335)
T ss_pred C
Confidence 4
No 99
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.09 E-value=1.6e+02 Score=27.02 Aligned_cols=52 Identities=23% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHCCCcEEEecCCC-----CHHHHHHHHhCCCCeeec------C--ChhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGF-----DDEANHLLLQKQLPAVRW------V--GGPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I-----~~~al~~l~~~~I~~i~~------v--~~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||..... +....+.|.+.||.++.- + -.+.++.+++++|-.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~~ 148 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGRE 148 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCCH
Confidence 477888899999886544 345778888888886541 1 145678888888854
No 100
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=26.48 E-value=3e+02 Score=24.99 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC---Chhh-HHHHHHHHCCeecc
Q psy9923 221 YEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV---GGPD-IELIAIVTGGRIVP 284 (315)
Q Consensus 221 ~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v---~~~~-l~~ls~~tGa~ii~ 284 (315)
+|++++.+.++.+.+. .++.++=....+.+.....+.|.-.+..+ ...+ ++.+++ .|+.++-
T Consensus 73 eE~~Rv~pvI~~l~~~-~~~~ISIDT~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~-~~~~vVl 138 (282)
T PRK11613 73 EELDRVIPVVEAIAQR-FEVWISVDTSKPEVIRESAKAGAHIINDIRSLSEPGALEAAAE-TGLPVCL 138 (282)
T ss_pred HHHHHHHHHHHHHHhc-CCCeEEEECCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH-cCCCEEE
Confidence 4677889999999753 25667778889999999888898888544 2334 544444 5666653
No 101
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=26.45 E-value=83 Score=26.44 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=34.4
Q ss_pred eeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHH
Q psy9923 185 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL 255 (315)
Q Consensus 185 ~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l 255 (315)
.+|+++++|.|..-. ...+ ++.+.++++.+.+.+..+|+++-+.+..+.+++
T Consensus 128 ~~p~illlDEP~~~L--------D~~~-----------~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~ 179 (194)
T cd03213 128 SNPSLLFLDEPTSGL--------DSSS-----------ALQVMSLLRRLADTGRTIICSIHQPSSEIFELF 179 (194)
T ss_pred cCCCEEEEeCCCcCC--------CHHH-----------HHHHHHHHHHHHhCCCEEEEEecCchHHHHHhc
Confidence 579999999996432 1111 223466777777668889999888775555544
No 102
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.42 E-value=97 Score=25.54 Aligned_cols=51 Identities=24% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHHHHCCCcEEEecCCCCHH-HHHHHHhCCCCeeec-C----C--hhhHHHHHHHHC
Q psy9923 229 MVDKVKATGATLAICQWGFDDE-ANHLLLQKQLPAVRW-V----G--GPDIELIAIVTG 279 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~-al~~l~~~~I~~i~~-v----~--~~~l~~ls~~tG 279 (315)
=++++...+++|||......+. ....|.+.||.++.- . . .+.++.+..++|
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred CHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 4578888999999886655553 888899999865331 1 1 244777888888
No 103
>PHA02591 hypothetical protein; Provisional
Probab=26.36 E-value=1e+02 Score=22.24 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh
Q psy9923 57 LLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLET 91 (315)
Q Consensus 57 ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~ 91 (315)
+..-|.+|.++|+.+..|.+.+......+.+++.+
T Consensus 48 ~~~vA~eL~eqGlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 48 LISVTHELARKGFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhc
Confidence 34556778889999999999888877777777653
No 104
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.81 E-value=1e+02 Score=20.38 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeec
Q psy9923 246 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 283 (315)
Q Consensus 246 ~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii 283 (315)
+++...++-+...+ ...++.+.+.+||.+.|+++-
T Consensus 21 gis~~tl~~~~~~~---~~~~~~~~l~~ia~~l~~~~~ 55 (63)
T PF13443_consen 21 GISRSTLSRILNGK---PSNPSLDTLEKIAKALNCSPE 55 (63)
T ss_dssp T--HHHHHHHHTTT--------HHHHHHHHHHHT--HH
T ss_pred CcCHHHHHHHHhcc---cccccHHHHHHHHHHcCCCHH
Confidence 67777777666655 368899999999999999864
No 105
>KOG0991|consensus
Probab=25.71 E-value=2.1e+02 Score=25.63 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHhhccccChH--HHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy9923 16 ATILKLMDVDHEI--AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQ 83 (315)
Q Consensus 16 ~tIl~~l~i~hP~--a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~ 83 (315)
--++|-.+.+||. -+|+..+.+.--++ |..+|++.++ .|++|..|+..+-...+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~~~~~~-----------A~~il~~lw~---lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLKRNIDE-----------ALKILAELWK---LGYSPEDIITTLFRVVK 283 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHhccHHH-----------HHHHHHHHHH---cCCCHHHHHHHHHHHHH
Confidence 3456667889996 67777766554333 4777777554 59999999887666554
No 106
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=25.56 E-value=1.9e+02 Score=25.12 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC------hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG------GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~------~~~l~~ls~~tGa~ 281 (315)
++++...+++|||......+.....|.+.+..++...+ .+.++.+++++|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 37788889999999877776566667665433333332 23577788888855
No 107
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=25.55 E-value=3.2e+02 Score=24.38 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCCh----hhHHHHHHHHCCeecc
Q psy9923 220 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG----PDIELIAIVTGGRIVP 284 (315)
Q Consensus 220 ~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~----~~l~~ls~~tGa~ii~ 284 (315)
+.|++++.+.++.+.+. .++.++=...++.+.....++|.-.+..++- +.+-.++.-.|+.++-
T Consensus 58 ~~E~~rl~~~v~~i~~~-~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 58 EEELERVIPVLEALRGE-LDVLISVDTFRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVL 125 (257)
T ss_pred HHHHHHHHHHHHHHHhc-CCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence 34777888999998764 2455677888999999888889777765532 4566666777887775
No 108
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=25.28 E-value=64 Score=28.41 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCCh
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG 268 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~ 268 (315)
+++.|....|+++|++...-...+.++-.+.||..+..++.
T Consensus 183 emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 183 EMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 57778888888888888888888888888888887765543
No 109
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=24.78 E-value=2e+02 Score=23.86 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCC---eeecC--ChhhH--HHHHHHHCC
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP---AVRWV--GGPDI--ELIAIVTGG 280 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~---~i~~v--~~~~l--~~ls~~tGa 280 (315)
.+.++.+.+.|+.+.+++++-...+...+.+.||. ++.++ +.+.- .++.+..+.
T Consensus 133 ~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 133 KEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 56788999999999999999999999999999994 66777 65555 777777664
No 110
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.69 E-value=2.7e+02 Score=21.48 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCcEEEecCC-----CCHHHHHHHHhCCCCeeecC
Q psy9923 226 FASMVDKVKATGATLAICQWG-----FDDEANHLLLQKQLPAVRWV 266 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~-----I~~~al~~l~~~~I~~i~~v 266 (315)
+.++++.+.+.|+--+.+..+ +++.+.+++.++++..+.--
T Consensus 61 ~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 61 LREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred HHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeC
Confidence 468899999999876666554 99999999999999988733
No 111
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=24.48 E-value=2.3e+02 Score=26.67 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeec
Q psy9923 222 EQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 283 (315)
Q Consensus 222 E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii 283 (315)
+...+.++++.+++.|+++|+..-.|++...+.+.+.++.-. =...++.++.-+|+..+
T Consensus 250 q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~~~~~---w~~~i~~l~~~~~~~~~ 308 (345)
T PF07611_consen 250 QFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKELKVYES---WWPIIKKLAKEYGIPFL 308 (345)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhchhhH---HHHHHHHHHhcCCceEe
Confidence 445678999999999999999999999999999999988321 15567788888888765
No 112
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=24.33 E-value=1.1e+02 Score=22.69 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHHHHC--CCcEEEecCCCCHHHHHHHHh-CCCCee
Q psy9923 227 ASMVDKVKAT--GATLAICQWGFDDEANHLLLQ-KQLPAV 263 (315)
Q Consensus 227 ~~~~~~i~~~--~~~lVi~~~~I~~~al~~l~~-~~I~~i 263 (315)
.+++..+... ..-++++..++++.|..+..+ ++|..+
T Consensus 67 ~~~~~~~~~~~~~~~iivt~~~~t~~a~~~~~~~~~I~l~ 106 (115)
T PF04471_consen 67 RQLIGKAKKYGADKGIIVTSSGFTPEAKEFAEKFKNIELI 106 (115)
T ss_dssp HHHHHHHGGGT-SEEEEE-SSEE-HHHHHHHH--------
T ss_pred HHHhhhhhccCCCEEEEEECCcCCHHHHHHHHhhcccccc
Confidence 3444444444 345888899999999999988 664443
No 113
>PRK06842 fumarate hydratase; Provisional
Probab=24.31 E-value=2.7e+02 Score=23.63 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEE
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQ 304 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ 304 (315)
.+....+.+.|+.++|=.++-++.+.+.|.++|-.-+.-+.-.- --+++ -+.+...+.-.+|| ++.+++-+
T Consensus 85 d~y~~~l~~~Gv~~~IGKG~r~~~~~~a~k~~gaVYl~~~GGaa-Alla~-----~Ik~v~~v~~~dLG-~EAi~~l~ 155 (185)
T PRK06842 85 DAYAPRLLDIGLKGMIGKGARSDEVIESIKKNKAVYFGAIGGAA-ALIAK-----SIKKSEVIAYEDLG-AEAIRKLE 155 (185)
T ss_pred hhhHHHHHHCCCeEEEECCCCCHHHHHHHHHcCEEEEEcCChHH-HHHHh-----heeeEeEEeccccC-ccEEEEEE
Confidence 56667777789999999999999999999999987666554211 11111 12233334445688 77776654
No 114
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=24.31 E-value=1.2e+02 Score=26.52 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=32.9
Q ss_pred eceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCC
Q psy9923 186 DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFD 248 (315)
Q Consensus 186 ~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~ 248 (315)
+|+.++||.|+.-- .--+..++ ++++..+++.|..++|+.-.|-
T Consensus 157 ~P~fiLLDEPFAGV--------DPiaV~dI-----------q~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 157 NPKFILLDEPFAGV--------DPIAVIDI-----------QRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred CCCEEEecCCccCC--------CchhHHHH-----------HHHHHHHHhCCceEEEccccHH
Confidence 79999999997432 22335565 6788999999999999976653
No 115
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=23.94 E-value=1.4e+02 Score=27.13 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQL 260 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I 260 (315)
+.++++.+.+.|+++.+++.+..+.+...|.+.|+
T Consensus 126 ~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 126 YENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred HHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 46788999999999999999999999999998887
No 116
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.94 E-value=3.3e+02 Score=24.78 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC---hhhHHHHHHHHCCeecc
Q psy9923 221 YEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG---GPDIELIAIVTGGRIVP 284 (315)
Q Consensus 221 ~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~---~~~l~~ls~~tGa~ii~ 284 (315)
+|.+++.+.++.+...++ .++=....+.+.....++|.-.+..++ ...+.+++.-.|+.++-
T Consensus 60 eE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGadiINDVsg~~d~~~~~vva~~~~~vVl 124 (279)
T PRK13753 60 DEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVV 124 (279)
T ss_pred HHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEE
Confidence 477788999999988654 467678899999999999988877664 44454544445655553
No 117
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.78 E-value=93 Score=26.05 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=33.8
Q ss_pred eeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHH
Q psy9923 185 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLL 255 (315)
Q Consensus 185 ~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l 255 (315)
.+|+++++|.|.... . ++. ++.+.+.+..+.+.+..+|+++-+.++.+..++
T Consensus 125 ~~p~vlllDEP~~~L--------D---~~~--------~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~ 176 (192)
T cd03232 125 AKPSILFLDEPTSGL--------D---SQA--------AYNIVRFLKKLADSGQAILCTIHQPSASIFEKF 176 (192)
T ss_pred cCCcEEEEeCCCcCC--------C---HHH--------HHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC
Confidence 579999999996432 1 111 223456667776668889999888765445544
No 118
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.64 E-value=2.3e+02 Score=23.99 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHCCCcEEEecCCC-CHHHHHHHHhCCCCeeecCC-------hhhHHHHHHHHCCe
Q psy9923 231 DKVKATGATLAICQWGF-DDEANHLLLQKQLPAVRWVG-------GPDIELIAIVTGGR 281 (315)
Q Consensus 231 ~~i~~~~~~lVi~~~~I-~~~al~~l~~~~I~~i~~v~-------~~~l~~ls~~tGa~ 281 (315)
|++...+++|||..... .......+.+.+|.++---. .+.++.++.++|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 77888899999998888 77778888888998765222 46788888888865
No 119
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.52 E-value=4.4e+02 Score=22.57 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHhCCCCeee---cCChhhHHHHHHHH
Q psy9923 246 GFDDEANHLLLQKQLPAVR---WVGGPDIELIAIVT 278 (315)
Q Consensus 246 ~I~~~al~~l~~~~I~~i~---~v~~~~l~~ls~~t 278 (315)
-.+..+.+++.+.|+..+- .++.++++.++..+
T Consensus 47 v~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~ 82 (233)
T PF01136_consen 47 VFNSESARFLKELGASRITLSPELSLEEIKEIAENS 82 (233)
T ss_pred CCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhC
Confidence 3467777888888776543 56899999999988
No 120
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.25 E-value=3.5e+02 Score=23.63 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=40.7
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC-ChhhHHHHHHHHCCeecc
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV-GGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v-~~~~l~~ls~~tGa~ii~ 284 (315)
++...+.|++.+++ .+.++.+.+++.++|+..+-.+ ...|+.. +.-.|++++-
T Consensus 84 a~~a~~aGA~FiVs-P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~-A~~~Ga~~vK 137 (222)
T PRK07114 84 AALYIQLGANFIVT-PLFNPDIAKVCNRRKVPYSPGCGSLSEIGY-AEELGCEIVK 137 (222)
T ss_pred HHHHHHcCCCEEEC-CCCCHHHHHHHHHcCCCEeCCCCCHHHHHH-HHHCCCCEEE
Confidence 36778889999888 4899999999999999998644 5555544 4446777764
No 121
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=23.17 E-value=1.4e+02 Score=27.02 Aligned_cols=39 Identities=8% Similarity=-0.054 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCCcEE-EecCCCCHHHHHHHHhCCCCeeec
Q psy9923 227 ASMVDKVKATGATLA-ICQWGFDDEANHLLLQKQLPAVRW 265 (315)
Q Consensus 227 ~~~~~~i~~~~~~lV-i~~~~I~~~al~~l~~~~I~~i~~ 265 (315)
..-+..+++.|+|.| +....-++..+++|.+.||++...
T Consensus 39 ~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e 78 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQE 78 (298)
T ss_dssp HHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEe
Confidence 456788899999998 456667899999999999998753
No 122
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.88 E-value=2e+02 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=34.4
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC-------hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG-------GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~-------~~~l~~ls~~tGa~ 281 (315)
+|+|...+++||+....-.+...+++...++.++..-. ++.++.++.++|-.
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~~ 123 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGKE 123 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCcH
Confidence 47788889999998655555555556666666554211 23578888888854
No 123
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=22.57 E-value=1.7e+02 Score=30.26 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=55.1
Q ss_pred cceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEe
Q psy9923 164 MLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAIC 243 (315)
Q Consensus 164 ~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~ 243 (315)
.+=+|..++++..+.+.|......|+++.|.+=.+...+ . . .+.. ..+.++++.+.|+.++++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~d--~--~-i~~~------------t~eAL~~L~ekGI~~VIA 455 (694)
T PRK14502 393 VLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNPL--T--Y-SYST------------ALDALRLLKDKELPLVFC 455 (694)
T ss_pred eCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCCC--C--c-cCHH------------HHHHHHHHHHcCCeEEEE
Confidence 345788888888777777777677888876552222111 1 0 1111 256788999999999999
Q ss_pred cCCCCHHHHHHHHhCCC
Q psy9923 244 QWGFDDEANHLLLQKQL 260 (315)
Q Consensus 244 ~~~I~~~al~~l~~~~I 260 (315)
++.-...+..++.+-++
T Consensus 456 TGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 456 SAKTMGEQDLYRNELGI 472 (694)
T ss_pred eCCCHHHHHHHHHHcCC
Confidence 99988888888877664
No 124
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=21.87 E-value=1.1e+02 Score=30.39 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=34.5
Q ss_pred eceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCH
Q psy9923 186 DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDD 249 (315)
Q Consensus 186 ~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~ 249 (315)
++|++++|.|=.. +...|.+.+.+++.++++.|+.+|+++-..++
T Consensus 163 ~arllIlDEPTaa-------------------Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 163 DARVLILDEPTAA-------------------LTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred CCCEEEEcCCccc-------------------CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 7899999998221 12345666789999999999999999876544
No 125
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=21.79 E-value=4.6e+02 Score=24.07 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC--CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCC--eeccCC
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKAT--GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGG--RIVPRF 286 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~--~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa--~ii~~l 286 (315)
|++++++| -.-+++++++.+++. +.+++...++-. ..+.++.+.++-++..-...++....+..|. .++..+
T Consensus 208 sp~~f~ef---~~p~~k~i~~~i~~~~~~~~ilh~cg~~~-~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni 283 (338)
T TIGR01464 208 SPEDFEEF---VLPYLKKIIEEVKARLPNVPVILFAKGAG-HLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNL 283 (338)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHhCCCCCEEEEeCCcH-HHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCC
Confidence 46665444 456677888888876 566775555655 4577888888888754445678888888885 455555
Q ss_pred C
Q psy9923 287 E 287 (315)
Q Consensus 287 ~ 287 (315)
+
T Consensus 284 ~ 284 (338)
T TIGR01464 284 D 284 (338)
T ss_pred C
Confidence 3
No 126
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.66 E-value=2e+02 Score=27.95 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHH
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIE 272 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~ 272 (315)
+..+++.| .++++|+| .+|.+.+...|.+.||.++.....+.++
T Consensus 389 ~~~~~~~L--~dc~~Vi~-~~IG~~a~~~L~~~GI~v~~~~~~~~Ie 432 (442)
T TIGR01290 389 LDAIIELL--SDCKALLC-SRIGLTPRKALEAAGVEPQVDYDGQPIE 432 (442)
T ss_pred HHHHHHHH--CCCcEEEE-cccCHHHHHHHHHcCCEEEEcCCCCcHH
Confidence 34555555 78999999 4899999999999999999776543333
No 127
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=21.40 E-value=1.5e+02 Score=22.32 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=25.5
Q ss_pred HHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeee
Q psy9923 231 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVR 264 (315)
Q Consensus 231 ~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~ 264 (315)
+.+.+.++++||..+...+.....+.+.|+.++.
T Consensus 55 E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 55 EKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 5566679999999887766667778888866543
No 128
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=21.32 E-value=1.6e+02 Score=21.03 Aligned_cols=40 Identities=23% Similarity=0.431 Sum_probs=30.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhh
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQD 40 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~ 40 (315)
+++++.|-+.+..-|+.|.+.++-.+-+..+...++..-+
T Consensus 19 Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~ 58 (81)
T TIGR03859 19 VLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFP 58 (81)
T ss_pred EEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcC
Confidence 3556667778888899999999888888787777766544
No 129
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=21.09 E-value=1.7e+02 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCe
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPA 262 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~ 262 (315)
+.+.++.+.+.|..+++++.+....+...+...|+.-
T Consensus 85 ~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 121 (201)
T TIGR01491 85 AEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY 121 (201)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe
Confidence 3677888888999999999999999999998888753
No 130
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=20.78 E-value=1.9e+02 Score=21.45 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQL 260 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I 260 (315)
.+.++.+.+.|..+++++.+-.+.+...+...++
T Consensus 30 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 30 KEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 5778888888999999998888888899988876
No 131
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=20.66 E-value=2e+02 Score=23.17 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCC
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP 261 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~ 261 (315)
+.+.++.+.+.|..+++++.+....+...+.+.|+.
T Consensus 78 ~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 78 ARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 356778888899999999999999899988888775
No 132
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=20.37 E-value=2.4e+02 Score=25.96 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKATGA-TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~~~-~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
|++.++++ -.-+++++++.+++.|. .+++-..+-....+..+.+.|+-++..-...++....+..|..
T Consensus 210 sp~~f~e~---~~P~~k~i~~~i~~~g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~ 278 (343)
T PF01208_consen 210 SPEMFEEF---ILPYLKKIIDAIKEAGKDPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDK 278 (343)
T ss_dssp -HHHHHHH---THHHHHHHHHHHHHHETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTS
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHhCCCceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCC
Confidence 45555444 45677889999999887 6665544555558889999999988766667786677666533
Done!