Query psy9923
Match_columns 315
No_of_seqs 129 out of 1349
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:06:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q3q_A Thermosome alpha subuni 100.0 2.2E-70 7.5E-75 535.9 35.0 305 1-307 51-357 (548)
2 3iyg_E T-complex protein 1 sub 100.0 2.3E-70 8E-75 532.9 34.5 307 1-307 38-344 (515)
3 3ko1_A Chaperonin; 9-fold symm 100.0 1.3E-70 4.5E-75 537.1 31.8 305 1-307 58-364 (553)
4 1a6d_B Thermosome (beta subuni 100.0 2E-70 7E-75 536.0 33.1 305 1-307 49-355 (543)
5 3iyg_A T-complex protein 1 sub 100.0 5E-70 1.7E-74 531.7 35.0 306 1-308 38-353 (529)
6 3ruv_A Chaperonin, CPN; double 100.0 4E-70 1.4E-74 533.5 34.1 305 1-308 47-351 (543)
7 3aq1_B Thermosome subunit; gro 100.0 2.6E-71 9E-76 537.4 24.6 305 1-307 1-308 (500)
8 1a6d_A Thermosome (alpha subun 100.0 4.5E-70 1.6E-74 533.4 33.0 303 1-307 50-354 (545)
9 3iyg_H T-complex protein 1 sub 100.0 1.3E-69 4.4E-74 526.9 33.5 304 1-308 39-347 (515)
10 3iyg_G T-complex protein 1 sub 100.0 5.9E-69 2E-73 522.6 35.1 306 1-308 37-346 (515)
11 3iyg_B T-complex protein 1 sub 100.0 4.5E-69 1.6E-73 523.2 34.2 303 1-308 38-344 (513)
12 3p9d_E T-complex protein 1 sub 100.0 1.5E-69 5E-74 531.1 30.4 307 1-307 73-387 (562)
13 3p9d_D T-complex protein 1 sub 100.0 1.3E-69 4.3E-74 528.4 29.7 306 1-308 47-358 (528)
14 3iyg_D T-complex protein 1 sub 100.0 1.2E-68 4.2E-73 520.7 33.1 304 1-307 39-348 (518)
15 3p9d_A T-complex protein 1 sub 100.0 4.6E-69 1.6E-73 527.3 29.3 306 1-308 52-369 (559)
16 3p9d_H T-complex protein 1 sub 100.0 1.2E-68 4.1E-73 525.2 28.9 304 1-307 54-365 (568)
17 3iyg_Z T-complex protein 1 sub 100.0 7.6E-68 2.6E-72 514.7 32.0 303 1-308 38-350 (517)
18 3p9d_C T-complex protein 1 sub 100.0 6.3E-68 2.2E-72 519.8 27.5 305 1-307 47-362 (590)
19 3p9d_F T-complex protein 1 sub 100.0 3.3E-68 1.1E-72 520.7 23.8 308 1-308 45-362 (546)
20 3iyg_Q T-complex protein 1 sub 100.0 8.1E-67 2.8E-71 507.7 33.3 304 1-308 39-342 (512)
21 3p9d_G T-complex protein 1 sub 100.0 4.4E-68 1.5E-72 519.4 24.1 304 1-307 52-359 (550)
22 3p9d_B T-complex protein 1 sub 100.0 2.2E-66 7.5E-71 506.2 22.7 302 1-307 45-350 (527)
23 1kp8_A Groel protein; chaperon 100.0 2.6E-54 8.9E-59 420.5 24.6 260 1-303 38-325 (547)
24 1we3_A CPN60(groel); chaperoni 100.0 1E-53 3.4E-58 416.8 24.8 259 1-303 38-324 (543)
25 1iok_A Chaperonin 60; chaperon 100.0 1.5E-54 5.1E-59 422.4 18.6 260 1-303 39-326 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 7.4E-53 2.5E-57 409.4 21.4 259 1-302 38-323 (546)
27 1gml_A T-complex protein 1 sub 100.0 2.8E-36 9.6E-41 254.0 15.2 148 160-307 1-149 (178)
28 1ass_A Thermosome; chaperonin, 100.0 9.4E-36 3.2E-40 246.0 12.5 142 166-307 1-142 (159)
29 1srv_A Protein (groel (HSP60 c 99.5 2.1E-14 7.2E-19 113.5 5.1 113 168-304 1-136 (145)
30 3m6c_A 60 kDa chaperonin 1; ch 99.5 1.7E-14 5.6E-19 119.5 4.1 117 164-304 3-142 (194)
31 3osx_A 60 kDa chaperonin; alph 99.4 8.9E-14 3E-18 115.4 5.5 115 166-304 12-149 (201)
32 1o13_A Probable NIFB protein; 84.9 2.3 7.8E-05 33.0 6.5 53 229-282 68-120 (136)
33 2yx6_A Hypothetical protein PH 83.3 2.9 0.0001 31.4 6.4 53 228-281 54-106 (121)
34 2wfb_A Putative uncharacterize 80.5 3.6 0.00012 30.9 5.9 54 228-282 58-112 (120)
35 1eo1_A Hypothetical protein MT 79.4 3.9 0.00013 30.8 5.9 52 229-281 57-108 (124)
36 1rdu_A Conserved hypothetical 78.3 4.3 0.00015 30.2 5.7 52 229-281 54-105 (116)
37 2re2_A Uncharacterized protein 76.1 6.3 0.00021 30.4 6.2 52 228-281 70-121 (136)
38 2qtd_A Uncharacterized protein 67.6 14 0.00048 26.8 6.2 50 231-282 50-99 (105)
39 2lbw_A H/ACA ribonucleoprotein 52.0 42 0.0014 25.1 6.5 50 228-280 27-81 (121)
40 2xzm_U Ribosomal protein L7AE 51.2 43 0.0015 25.3 6.5 50 228-280 31-85 (126)
41 3psh_A Protein HI_1472; substr 48.9 37 0.0013 29.6 6.7 51 231-281 78-154 (326)
42 3v7q_A Probable ribosomal prot 47.6 56 0.0019 23.4 6.4 52 228-282 26-81 (101)
43 3v7e_A Ribosome-associated pro 44.2 44 0.0015 23.0 5.2 51 228-281 18-72 (82)
44 2r79_A Periplasmic binding pro 42.2 65 0.0022 27.4 7.1 52 230-281 52-111 (283)
45 3on1_A BH2414 protein; structu 41.8 58 0.002 23.3 5.7 51 228-281 25-79 (101)
46 2ale_A SNU13, NHP2/L7AE family 40.3 36 0.0012 26.1 4.5 51 228-281 39-94 (134)
47 3iz5_f 60S ribosomal protein L 40.3 87 0.003 23.0 6.6 52 227-281 32-88 (112)
48 2wi8_A Iron-uptake system-bind 39.9 54 0.0018 28.4 6.3 52 230-281 89-144 (311)
49 1p90_A NAFY protein, hypotheti 39.7 30 0.001 26.8 4.1 50 236-286 66-119 (145)
50 2q8p_A Iron-regulated surface 38.9 35 0.0012 28.5 4.8 52 230-281 53-110 (260)
51 3md9_A Hemin-binding periplasm 36.9 71 0.0024 26.5 6.4 52 230-281 52-111 (255)
52 4a18_G RPL30; ribosome, eukary 36.5 79 0.0027 22.7 5.8 52 227-281 28-84 (104)
53 1n2z_A Vitamin B12 transport p 35.8 51 0.0017 27.3 5.3 51 230-280 50-107 (245)
54 2etv_A Iron(III) ABC transport 34.8 51 0.0018 29.1 5.4 52 230-281 89-151 (346)
55 1vq8_F 50S ribosomal protein L 34.5 86 0.003 23.2 5.8 51 228-281 36-91 (120)
56 2r7a_A Bacterial heme binding 33.8 66 0.0023 26.7 5.7 52 230-281 52-112 (256)
57 2aif_A Ribosomal protein L7A; 33.0 76 0.0026 24.2 5.4 51 228-281 48-103 (135)
58 1xbi_A 50S ribosomal protein L 33.0 71 0.0024 23.7 5.1 51 228-281 36-91 (120)
59 1r3s_A URO-D, uroporphyrinogen 32.2 88 0.003 28.0 6.5 68 210-281 224-298 (367)
60 4hb7_A Dihydropteroate synthas 31.9 79 0.0027 27.3 5.8 63 220-284 64-130 (270)
61 3fst_A 5,10-methylenetetrahydr 31.4 1.9E+02 0.0066 25.2 8.4 57 224-284 167-233 (304)
62 2fc3_A 50S ribosomal protein L 31.2 93 0.0032 23.2 5.5 51 228-281 35-90 (124)
63 4hn9_A Iron complex transport 30.5 85 0.0029 27.5 6.1 51 230-281 109-165 (335)
64 3o85_A Ribosomal protein L7AE; 30.1 1E+02 0.0034 23.0 5.5 51 228-281 38-93 (122)
65 3u5e_c L32, RP73, YL38, 60S ri 30.0 1E+02 0.0035 22.2 5.4 52 227-281 28-84 (105)
66 2inf_A URO-D, UPD, uroporphyri 28.3 1.2E+02 0.0041 26.9 6.7 67 210-281 220-286 (359)
67 3cpq_A 50S ribosomal protein L 27.0 1.8E+02 0.0061 21.0 6.7 52 227-281 27-83 (110)
68 3ff4_A Uncharacterized protein 26.2 71 0.0024 23.8 4.0 38 227-264 72-110 (122)
69 3oak_C Transcription elongatio 26.1 46 0.0016 18.6 2.1 25 27-52 2-26 (31)
70 2eja_A URO-D, UPD, uroporphyri 25.2 1.7E+02 0.0057 25.6 7.0 73 211-287 207-280 (338)
71 3jyw_G 60S ribosomal protein L 24.8 87 0.003 23.2 4.2 52 228-282 32-88 (113)
72 2zkr_f 60S ribosomal protein L 24.4 1.1E+02 0.0038 26.3 5.3 51 228-281 142-197 (266)
73 3tny_A YFIY (ABC transport sys 24.4 53 0.0018 28.2 3.5 52 230-281 89-144 (303)
74 1rlg_A 50S ribosomal protein L 24.2 81 0.0028 23.3 4.0 51 228-281 34-89 (119)
75 2pw9_A Putative formate dehydr 24.2 53 0.0018 28.4 3.3 40 228-267 206-245 (268)
76 1eye_A DHPS 1, dihydropteroate 24.0 1.5E+02 0.005 25.7 6.2 63 220-284 63-129 (280)
77 2vef_A Dihydropteroate synthas 23.9 2.2E+02 0.0075 25.0 7.4 65 219-284 66-134 (314)
78 2kz3_A Putative uncharacterize 23.7 45 0.0015 23.3 2.3 37 246-282 11-47 (83)
79 2jnb_A NHP2-like protein 1; sp 23.0 36 0.0012 26.5 1.8 52 227-281 56-112 (144)
80 3pry_A Heat shock protein HSP 22.3 31 0.0011 29.8 1.5 44 227-270 215-258 (268)
81 3bo9_A Putative nitroalkan dio 22.2 1.8E+02 0.0062 25.5 6.6 56 227-283 92-148 (326)
82 3zxn_A RSBS, anti-sigma-factor 22.0 2.2E+02 0.0077 20.7 6.2 34 226-261 64-97 (123)
83 3cyv_A URO-D, UPD, uroporphyri 21.4 94 0.0032 27.5 4.6 67 211-281 215-285 (354)
84 2gjl_A Hypothetical protein PA 21.1 1.8E+02 0.0061 25.4 6.3 57 228-284 87-143 (328)
85 3j21_Z 50S ribosomal protein L 20.5 2.1E+02 0.007 20.2 5.5 50 228-280 22-76 (99)
No 1
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=2.2e-70 Score=535.91 Aligned_cols=305 Identities=40% Similarity=0.590 Sum_probs=293.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 51 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~ 130 (548)
T 1q3q_A 51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYAL 130 (548)
T ss_dssp EEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc--cCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~--~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.++|+++|++|+++|+.++++.. ...+|+++|+|+++.|+
T Consensus 131 A~~~a~~~L~~~s~~v~--~~d~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~ 208 (548)
T 1q3q_A 131 AAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGE 208 (548)
T ss_dssp HHHHHHHHHHHHCEECC--TTCHHHHHHHHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBS
T ss_pred HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCC
Confidence 99999999999977654 346899999999999999999999999999999999998642 23478889999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
+++||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|+
T Consensus 209 ~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~ 288 (548)
T 1q3q_A 209 GVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA 288 (548)
T ss_dssp CGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CccceEEEeeEEEeccCCCCCCcceecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||||++++|++.|++||.++||.+++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 289 ~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~ 357 (548)
T 1q3q_A 289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG 357 (548)
T ss_dssp CEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT
T ss_pred CEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998874
No 2
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.3e-70 Score=532.86 Aligned_cols=307 Identities=75% Similarity=1.186 Sum_probs=295.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+|+|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 38 ml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~ 117 (515)
T 3iyg_E 38 MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQ 117 (515)
T ss_pred EEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+++.+..+++.|.++|+||++||..+.+.+.|+++++||+..+.+..+..+|+++|+|++++|+++
T Consensus 118 A~~~a~~~L~~~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~ 197 (515)
T 3iyg_E 118 AARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRL 197 (515)
T ss_pred HHHHHHHHHHHhceecCCCccCHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCc
Confidence 99999999999987776554578999999999999999999999999999999999976444468889999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
.||++++|++|++++.+++||+++++|||++++|||++.+++.+++++++++++++.+.++|+++++++++++.+.|+||
T Consensus 198 ~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~v 277 (515)
T 3iyg_E 198 EDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANL 277 (515)
T ss_pred ccceEEeeEEEecccccccccccCCCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||++++|++.|++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 278 vi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~ 344 (515)
T 3iyg_E 278 AVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGT 344 (515)
T ss_pred EEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999985
No 3
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=1.3e-70 Score=537.13 Aligned_cols=305 Identities=38% Similarity=0.612 Sum_probs=293.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 58 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~ 137 (553)
T 3ko1_A 58 MLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKK 137 (553)
T ss_dssp EEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhccceEEecCccchhhhhhccChhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc--ccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL--EKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~--~~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.+.|+++|++|+++|+.++++. +...+|+++|+|+++.|+
T Consensus 138 A~~~a~~~L~~~s~~v~--~~d~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg 215 (553)
T 3ko1_A 138 AEEVALQTIQELAQTVS--INDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGG 215 (553)
T ss_dssp HHHHHHHHHHTTCEECC--TTCHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCC
Confidence 99999999999976654 34789999999999999999999999999999999999864 223488999999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
++.||++++|++|++++.+++||++++||||++++++|+++++++++++.+++++++..+.++|++++++++++|.+.|+
T Consensus 216 ~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~ 295 (553)
T 3ko1_A 216 SINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGA 295 (553)
T ss_dssp CGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccceeeEEEEecccccCCCCccccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 296 ~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~ 364 (553)
T 3ko1_A 296 NVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGE 364 (553)
T ss_dssp SEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSS
T ss_pred eEEEeccChHHHHHHHHHhcchhhhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998775
No 4
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=2e-70 Score=535.99 Aligned_cols=305 Identities=39% Similarity=0.614 Sum_probs=292.9
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 49 ml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~ 128 (543)
T 1a6d_B 49 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRM 128 (543)
T ss_dssp EEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc--ccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL--EKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~--~~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.++|+++|++|+++|+.++++. +...+|+++|+|+++.|+
T Consensus 129 A~~~a~~~L~~~a~~v~--~~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~ 206 (543)
T 1a6d_B 129 ASEEAKRVIDEISTKIG--ADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGG 206 (543)
T ss_dssp HHHHHHHHHHHHCEECC--TTHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCC
Confidence 99999999999977654 33689999999999999999999999999999999999864 222478889999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
+++||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|+
T Consensus 207 ~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~ 286 (543)
T 1a6d_B 207 AIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGA 286 (543)
T ss_dssp CGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccceeEEccEEEecCCCCCCCcceecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||||++++|++.|++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 287 ~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~ 355 (543)
T 1a6d_B 287 NVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE 355 (543)
T ss_dssp CEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT
T ss_pred CEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998874
No 5
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5e-70 Score=531.75 Aligned_cols=306 Identities=31% Similarity=0.446 Sum_probs=289.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 38 ml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GDGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~ 117 (529)
T 3iyg_A 38 MLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 117 (529)
T ss_pred EEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc---ccCCCCccceEEEecc
Q psy9923 81 AAQCAVKHLET-IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL---EKRDVNFELIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~-~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~---~~~~~~~~~I~i~~~~ 156 (315)
|++.++++|++ ++.++ +..+++.|.++|+|+++||+.++|+++|++|++||+.++++. +...+|+++|+|+++.
T Consensus 118 A~~~a~~~L~~~~s~~v--~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~ 195 (529)
T 3iyg_A 118 ACKEAVRYISENLIINT--DELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAH 195 (529)
T ss_pred HHHHHHHHHHHhcccCC--CCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEec
Confidence 99999999998 76554 334689999999999999999999999999999999999842 2235778889999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
|+++.||++++|++|++++.+++||++++||||+++++||++++++.++++.+++++++..+.++|++++++++++|.+.
T Consensus 196 G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~ 275 (529)
T 3iyg_A 196 GRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILAT 275 (529)
T ss_pred CCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCC------CCCceeeeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELT------SEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~------~~~lG~~~~v~~~~~~~~ 308 (315)
|+||||++++|++.+++||.++||++++++++++|+|||++|||++++++++++ +++||+|++|+++++|.+
T Consensus 276 g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~ 353 (529)
T 3iyg_A 276 GANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDD 353 (529)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccChhhCccceEEEEEEeCCc
Confidence 999999999999999999999999999999999999999999999999987765 578999999999998753
No 6
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=4e-70 Score=533.52 Aligned_cols=305 Identities=40% Similarity=0.609 Sum_probs=293.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 47 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~ 126 (543)
T 3ruv_A 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 126 (543)
T ss_dssp EEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++++++ ..+++.|.++|+|+++||+.+.|+++|++|+++|+.++++. .+.+|+++|+|+++.|+++
T Consensus 127 A~~~a~~~L~~~s~~v~--~~d~~~L~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~-~g~~dl~~I~V~k~~Gg~~ 203 (543)
T 3ruv_A 127 AAQKAQELLKTIACEVG--AQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDD-EGKVDKDLIKIEKKSGASI 203 (543)
T ss_dssp HHHHHHHHHHHHCEECC--TTCHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCT-TSCCCGGGEEEEEEECSCG
T ss_pred HHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcc-CCCcccceEEEEEcCCCCc
Confidence 99999999999976654 34789999999999999999999999999999999999864 1238889999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
.||++++|++|++++.+++||++++||||++++++|+++++++++++.+++++++..+.++|++++++++++|.+.|+||
T Consensus 204 ~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~v 283 (543)
T 3ruv_A 204 DDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 283 (543)
T ss_dssp GGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred ccceeecceEEeccccCccccccccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|..
T Consensus 284 vi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~ 351 (543)
T 3ruv_A 284 LFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGD 351 (543)
T ss_dssp EEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTE
T ss_pred EEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988753
No 7
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=2.6e-71 Score=537.40 Aligned_cols=305 Identities=37% Similarity=0.611 Sum_probs=226.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc--ccCCCC-ccceEEEeccC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL--EKRDVN-FELIKVEGKVG 157 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~--~~~~~~-~~~I~i~~~~G 157 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.++|++.|++|+++|+.++++. +...+| +++|+|++++|
T Consensus 81 A~~~a~~~L~~~s~~v~--~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G 158 (500)
T 3aq1_B 81 AAEKCREILETITIAIS--PDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAG 158 (500)
T ss_dssp HHHHHHHHHHHHCEECC--TTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEES
T ss_pred HHHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecC
Confidence 99999999999977653 34689999999999999999999999999999999999864 222366 67899999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~ 237 (315)
++++||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|
T Consensus 159 ~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g 238 (500)
T 3aq1_B 159 GSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238 (500)
T ss_dssp SCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTC
T ss_pred CCccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 238 ~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+||||++++|++.|++||.++||.+++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 239 ~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~ 308 (500)
T 3aq1_B 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG 308 (500)
T ss_dssp CSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS
T ss_pred cCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874
No 8
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=4.5e-70 Score=533.36 Aligned_cols=303 Identities=39% Similarity=0.611 Sum_probs=292.2
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 50 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~ 129 (545)
T 1a6d_A 50 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRL 129 (545)
T ss_dssp EEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccc--cCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~--~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+ + .+++.|.++|+|+++||+.++|+++|++|++||+.++++.. ...+|+++|+|+++.|+
T Consensus 130 A~~~a~~~L~~~s~~-~---~~~~~l~~va~tsl~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~ 205 (545)
T 1a6d_A 130 AVNEARKIIDEIAEK-S---TDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGG 205 (545)
T ss_dssp HHHHHHHHHHHHCEE-C---CCHHHHHHHHHHHTTTSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCS
T ss_pred HHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCC
Confidence 999999999999766 3 47899999999999999999999999999999999998642 23478889999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
+++||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++.+.++|++++++++++|.+.|+
T Consensus 206 ~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~ 285 (545)
T 1a6d_A 206 SVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 285 (545)
T ss_dssp CSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
||||++++|++.|++||.++||.+++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 286 ~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~ 354 (545)
T 1a6d_A 286 NVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 354 (545)
T ss_dssp CEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT
T ss_pred CEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998874
No 9
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.3e-69 Score=526.93 Aligned_cols=304 Identities=32% Similarity=0.493 Sum_probs=289.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+|+|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 39 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~ 118 (515)
T 3iyg_H 39 LIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRT 118 (515)
T ss_pred EEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhceeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCC--hHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDN--LEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~--~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++.+..+ ++.|.++|+|+++||+.+.++++|++|+++|+.+++ .++|++.|+|+++.|+
T Consensus 119 A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s~~~~~i~~livdAv~~V~----~~~d~~~I~V~k~~Gg 194 (515)
T 3iyg_H 119 ATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD----DLLQLKMIGIKKVQGG 194 (515)
T ss_pred HHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhc----ccCCcceEEEEecCCC
Confidence 9999999999997766432111 678899999999999999999999999999999997 3578888999999999
Q ss_pred CcccccceeEEEEecCCCCCCC---CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQM---PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~---~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~ 235 (315)
+..||++++|++|++++.||+| |+.++||||+++++||++++++.++++.++++++++.+.++|+++++++++++.+
T Consensus 195 ~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~ 274 (515)
T 3iyg_H 195 ALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274 (515)
T ss_pred CccceEEEeeeEEecCccCcccccCCccccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999976 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
.|+||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 275 ~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~ 347 (515)
T 3iyg_H 275 SGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE 347 (515)
T ss_pred cCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998753
No 10
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.9e-69 Score=522.64 Aligned_cols=306 Identities=29% Similarity=0.535 Sum_probs=290.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 37 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~ 116 (515)
T 3iyg_G 37 MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRK 116 (515)
T ss_pred EEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc--ccCCCCcc-ceEEEeccC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL--EKRDVNFE-LIKVEGKVG 157 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~--~~~~~~~~-~I~i~~~~G 157 (315)
|++.++++|++++.++ +..+++.|.++|+|++++|..+.|.+.++++++||+..+.+. +...+|++ +|+|++++|
T Consensus 117 A~~~a~~~L~~~s~~v--~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~G 194 (515)
T 3iyg_G 117 ALDDMISTLKKISIPV--DTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPG 194 (515)
T ss_pred HHHHHHHHHHHhhccc--CCCCHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecC
Confidence 9999999999986654 444689999999999999999999999999999999988732 12236665 499999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~ 237 (315)
+++.||++++|++|++++.+++||++++||||+++++||+++++++++++.+++++++..+.++|++++++++++|.+.|
T Consensus 195 gs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g 274 (515)
T 3iyg_G 195 GIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLK 274 (515)
T ss_pred CCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeeee
Q psy9923 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMFK 308 (315)
Q Consensus 238 ~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~ 308 (315)
++|||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+ |+.|+++++|.+
T Consensus 275 ~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~ 346 (515)
T 3iyg_G 275 PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDE 346 (515)
T ss_pred CCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999 999999998753
No 11
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=4.5e-69 Score=523.22 Aligned_cols=303 Identities=32% Similarity=0.445 Sum_probs=290.3
Q ss_pred CcccCC--CCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy9923 1 MMVSSD--GDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGF 78 (315)
Q Consensus 1 mi~~~~--g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~ 78 (315)
||+++. |+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||
T Consensus 38 ml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~ 117 (513)
T 3iyg_B 38 ILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW 117 (513)
T ss_pred EeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhhhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 788998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCC-CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccC
Q psy9923 79 ELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVG 157 (315)
Q Consensus 79 ~~a~~~~~~~L~~~s~~i~~~~-~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G 157 (315)
++|++.++++|++++.+++.+. .+++.|.++|+|++++|+.++|+++|++|+++|+.++++ .+|++.|+|+++.|
T Consensus 118 ~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~va~tslssK~~~~~~~~i~~livdAv~~V~~----~~d~~~I~V~ki~g 193 (513)
T 3iyg_B 118 REATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKG----SGNLEAIHVIKKLG 193 (513)
T ss_pred HHHHHHHHHHHHHhCcCcccccccCHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhcc----cCCcCeEEEEEeCC
Confidence 9999999999999977765332 368899999999999999999999999999999999984 37888899999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCC-CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK-TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~-~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++..||++++|++|++++.++ ||++++||||+++++||++++++ +++++.+++++++..+.++|++++++++++|.+.
T Consensus 194 g~~~ds~lv~G~v~dk~~~~~-m~~~~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~ 272 (513)
T 3iyg_B 194 GSLADSYLDEGFLLDKKIGVN-QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKH 272 (513)
T ss_pred CCccceeEEeeEEEeccccCC-CceeecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887 99999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++.+|.+
T Consensus 273 g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~ 344 (513)
T 3iyg_B 273 GINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGED 344 (513)
T ss_pred CCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCCEEecccccCCHhHCCcccEEEEEEECCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999988753
No 12
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=1.5e-69 Score=531.09 Aligned_cols=307 Identities=60% Similarity=1.005 Sum_probs=291.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 73 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~ 152 (562)
T 3p9d_E 73 ILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDE 152 (562)
T ss_dssp EEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCC--hHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDN--LEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGG 158 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~--~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~ 158 (315)
|++.++++|++++.+++.+..+ ++.|.++|+|+++||+.+.+.++|+++++||+..+.+..++++|+++|+|+++.|+
T Consensus 153 A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Gg 232 (562)
T 3p9d_E 153 AAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGG 232 (562)
T ss_dssp HHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSS
T ss_pred HHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCC
Confidence 9999999999998776654333 38899999999999999999999999999999999764445688999999999999
Q ss_pred CcccccceeEEEEecCCCCCCCCcee------eeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHH
Q psy9923 159 KLEDTMLVKGVVIDKDFSHPQMPKEL------RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDK 232 (315)
Q Consensus 159 ~~~dS~~i~G~vl~~~~~~~~~~~~~------~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~ 232 (315)
++.||++++|++|++++.+++||+++ +++||+++++||++.+++.+++++++++++++.+.++|++++++++++
T Consensus 233 s~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lek 312 (562)
T 3p9d_E 233 SISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDD 312 (562)
T ss_dssp CGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 233 VKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 233 i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|.+.|+||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 313 I~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~ 387 (562)
T 3p9d_E 313 VKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGT 387 (562)
T ss_dssp HHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSS
T ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 13
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=1.3e-69 Score=528.41 Aligned_cols=306 Identities=32% Similarity=0.524 Sum_probs=293.1
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+|+|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 47 ml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~ 126 (528)
T 3p9d_D 47 MIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQS 126 (528)
T ss_dssp EEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHHHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.++|+++|++|+++|+.++++...+.+|+++|+|++++|+++
T Consensus 127 A~~~a~~~L~~~s~~v~--~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~ 204 (528)
T 3p9d_D 127 AAKRSVDILLEMCHKVS--LSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTI 204 (528)
T ss_dssp HHHHHHHHHHTTCCCCC--SCCHHHHHHHHHHHSCSSSCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCS
T ss_pred HHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCc
Confidence 99999999999976553 3478999999999999999999999999999999999986323458888999999999999
Q ss_pred ccccceeEEEEecCCCCCC-CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 161 EDTMLVKGVVIDKDFSHPQ-MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~-~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
+||++++|++|++++.+++ ||++++||||++++++|++++++.++++.++++++++.+.++|+++++++++++.+.|+|
T Consensus 205 ~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~ 284 (528)
T 3p9d_D 205 DDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCN 284 (528)
T ss_dssp CCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCC
T ss_pred cceEEEeeeEEeecccCcccCcccccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC-----CHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 240 LAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 240 lVi~~~~I-----~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|||++++| ++.+++||.++||.+++++++++|+|||++|||+++++++++++++||+|++|++.++|.+
T Consensus 285 vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~ 358 (528)
T 3p9d_D 285 VLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGS 358 (528)
T ss_dssp EEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTE
T ss_pred EEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCE
Confidence 99999999 9999999999999999999999999999999999999999999999999999999987653
No 14
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-68 Score=520.75 Aligned_cols=304 Identities=31% Similarity=0.499 Sum_probs=291.5
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 39 ml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~ 118 (518)
T 3iyg_D 39 MIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQK 118 (518)
T ss_pred eeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCCCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc-ccCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL-EKRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~-~~~~~~~~~I~i~~~~G~~ 159 (315)
|++.++++|++++.+++ ..+++.|.++|+|+++||+.++|.++|++|+++|+.++++. ..+.+|+++|+|+++.|++
T Consensus 119 A~~~a~~~L~~~s~~v~--~~~~~~l~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~ 196 (518)
T 3iyg_D 119 ALEKGIEILTDMSRPVE--LSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGT 196 (518)
T ss_pred HHHHHHHHHHHheeeCC--CCChHHHHHHhHhhhccccchhhHHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCC
Confidence 99999999999976653 34688999999999999999999999999999999999852 2345888899999999999
Q ss_pred cccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
..||++++|++|++++.+ +||++++||||++++++|+++++++++++.++++++++.+.++|+++++++++++.+.|+|
T Consensus 197 ~~ds~lv~G~~~dk~~~~-~mp~~i~n~kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~ 275 (518)
T 3iyg_D 197 IDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCN 275 (518)
T ss_pred hhhheEeccEEEeccccc-CCCccccCceEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-----cCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 240 LAIC-----QWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 240 lVi~-----~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|||+ +++|++.|++||.++||.+++++++.+|+|||++|||+++++++++++++||+|++|++.++|.
T Consensus 276 lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~ 348 (518)
T 3iyg_D 276 VLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNG 348 (518)
T ss_pred EEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeCC
Confidence 9999 8999999999999999999999999999999999999999999999999999999999999986
No 15
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=4.6e-69 Score=527.26 Aligned_cols=306 Identities=32% Similarity=0.466 Sum_probs=290.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 52 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~ 131 (559)
T 3p9d_A 52 MLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRV 131 (559)
T ss_dssp EECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcc-c-c-cCCCCccceEEEecc
Q psy9923 81 AAQCAVKHLET-IADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVAD-L-E-KRDVNFELIKVEGKV 156 (315)
Q Consensus 81 a~~~~~~~L~~-~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~-~-~-~~~~~~~~I~i~~~~ 156 (315)
|++.++++|++ ++.+++. .+++.|.++|+|+++||+.++|+++|++|+++|+.++++ . . .+.+|+++|+|++++
T Consensus 132 A~~~a~~~L~~~~s~~v~~--~~~e~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~ 209 (559)
T 3p9d_A 132 ALREAIRFINEVLSTSVDT--LGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAH 209 (559)
T ss_dssp HHHHHHHHHHHHTGGGSCC----CTTHHHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEE
T ss_pred HHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEec
Confidence 99999999999 8776643 357889999999999999999999999999999999984 2 1 235788889999999
Q ss_pred CCCcccccceeEEEEecCCCCCCCCceee--eceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQMPKELR--DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVK 234 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~~~~~~~--~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~ 234 (315)
|++++||++++|++|++++.+++||++++ ||||++++++|+++++++++++.++++++++.+.++|++++++++++|.
T Consensus 210 Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~ 289 (559)
T 3p9d_A 210 GKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKII 289 (559)
T ss_dssp SSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceeEeccEEEeecccCCCcceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCC------CCCCCCCceeeeeEEEEEeeee
Q psy9923 235 ATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF------EELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 235 ~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
+.|+||||++++|++.|++||.++||++++++++++|+|||++|||++++++ +++++++||+|++|+++++|..
T Consensus 290 ~~g~~lvI~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~ 369 (559)
T 3p9d_A 290 DAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDD 369 (559)
T ss_dssp TTCCSEEEESSCCCGGGTHHHHHTTCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSC
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999998 7899999999999999988754
No 16
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=1.2e-68 Score=525.20 Aligned_cols=304 Identities=25% Similarity=0.408 Sum_probs=289.4
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 54 ml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~ 133 (568)
T 3p9d_H 54 IIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNM 133 (568)
T ss_dssp EEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhccc-----ccCCCCccceEEEec
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADL-----EKRDVNFELIKVEGK 155 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~-----~~~~~~~~~I~i~~~ 155 (315)
|++.++++|++++.++..+..+++.|.++|+|+++||+.+++ ++|++|++||+.++++. +...+|+++|+|+++
T Consensus 134 A~~~a~e~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~ 212 (568)
T 3p9d_H 134 ARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKI 212 (568)
T ss_dssp HHHHHHHHHHHHCCSCCCCCCTTHHHHHHHHHHHTTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEE
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEc
Confidence 999999999999876655556789999999999999999988 99999999999999863 223588889999999
Q ss_pred cCCCcccccceeEEEEecCCCCCCCCceee---eceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHH
Q psy9923 156 VGGKLEDTMLVKGVVIDKDFSHPQMPKELR---DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDK 232 (315)
Q Consensus 156 ~G~~~~dS~~i~G~vl~~~~~~~~~~~~~~---~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~ 232 (315)
+|++++||++++|++|++++. +||++++ ||||++++++|+++++++++++.+++++++..+.++|++++++++++
T Consensus 213 ~Ggs~~dS~lv~G~v~dk~~~--~m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~ 290 (568)
T 3p9d_H 213 MGGSLSNSTVIKGMVFNREPE--GHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKE 290 (568)
T ss_dssp ESSCGGGCEEESSCCBSSCBS--SGGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchheeeccEEEeeccc--CCcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 7999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 233 VKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 233 i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|.+.|+||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.
T Consensus 291 I~~~g~~vvi~~~~I~~~al~~L~~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~ 365 (568)
T 3p9d_H 291 IADMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGG 365 (568)
T ss_dssp HHHTTCCEEEECSCCCHHHHHHHHHHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETT
T ss_pred HHhcCCeEEEECCCcChHHHHHHHHCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
No 17
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=7.6e-68 Score=514.69 Aligned_cols=303 Identities=28% Similarity=0.438 Sum_probs=289.5
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 38 ml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~ 117 (517)
T 3iyg_Z 38 MLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEA 117 (517)
T ss_pred EEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+++. +++.|.++|+|+++||+.+.+.++|+++++||+..+.+.. ..+|+++|+|++++|++.
T Consensus 118 A~~~a~~~L~~~s~~v~~---~~~~L~~va~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~-~~~dl~~I~I~k~~Gg~~ 193 (517)
T 3iyg_Z 118 AKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQD-EPIDLFMVEIMEMKHKSE 193 (517)
T ss_pred HHHHHHHHHHhhCcCCCC---CHHHHHHHHHHHhccccchhHHHHHHHHHHHHhheeccCC-CcCChhHheeeeecCCCc
Confidence 999999999999766543 6889999999999999999999999999999999887532 458889999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc-
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT- 239 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~- 239 (315)
.||++++|++|++++.+++||++++||+|++++++|+++++++++++.++++++++.+.++|++++++.+++|...+++
T Consensus 194 ~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v 273 (517)
T 3iyg_Z 194 TDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKV 273 (517)
T ss_pred cccceEeeEEEeccCCCCCccccccCCeEEEecccccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred --------EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCC-ceeeeeEEEEEeeee
Q psy9923 240 --------LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEK-LGKAGLVRQTQTMFK 308 (315)
Q Consensus 240 --------lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~-lG~~~~v~~~~~~~~ 308 (315)
|||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++++ ||+|+ |+++++|.+
T Consensus 274 ~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~ 350 (517)
T 3iyg_Z 274 CGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEE 350 (517)
T ss_pred hhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCc
Confidence 488999999999999999999999999999999999999999999999999999 99999 999988753
No 18
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=6.3e-68 Score=519.81 Aligned_cols=305 Identities=31% Similarity=0.546 Sum_probs=288.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHL-LDKGIHPIRIADGFE 79 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~l-i~~gi~p~~i~~g~~ 79 (315)
||+++.|+|+|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.++ +.+|+||+.|++||+
T Consensus 47 ml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~ 126 (590)
T 3p9d_C 47 MLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALK 126 (590)
T ss_dssp EEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred EEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccC--------CCCcc-ce
Q psy9923 80 LAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKR--------DVNFE-LI 150 (315)
Q Consensus 80 ~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~--------~~~~~-~I 150 (315)
+|++.++++|++++.++ +..+++.|.++|+|++++|+.++|+++|++|+++|+.++++.... .+|++ +|
T Consensus 127 ~A~~~a~~~L~~~s~~v--~~~~~e~L~~vA~tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I 204 (590)
T 3p9d_C 127 KALTDALEVIKQVSKPV--DVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYV 204 (590)
T ss_dssp HHHHHHHHHHHHHCCTT--TTCCTHHHHHHHTTTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSS
T ss_pred HHHHHHHHHHHHHhhcc--ccCCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhce
Confidence 99999999999996554 444688999999999999999999999999999999999863211 34554 69
Q ss_pred EEEeccCCCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHH
Q psy9923 151 KVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMV 230 (315)
Q Consensus 151 ~i~~~~G~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~ 230 (315)
+|++++|+++.||++++|++|++++.+++||++++||||+++++||+++++++++++.++++++++.+.+.|++++++++
T Consensus 205 ~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~v 284 (590)
T 3p9d_C 205 RVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMC 284 (590)
T ss_dssp CEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcccceeeeEEEEecccCCCCCcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeee
Q psy9923 231 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMF 307 (315)
Q Consensus 231 ~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~ 307 (315)
++|.+.|++|||++++|++.|++||.++||.+++++++++|+|||++|||+++++++++++++||+ |++|+++.+|.
T Consensus 285 ekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~ 362 (590)
T 3p9d_C 285 EQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGD 362 (590)
T ss_dssp HHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETT
T ss_pred HHHHhcCCcEEEecCCcCHHHHHHHHhccceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999988765
No 19
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=3.3e-68 Score=520.67 Aligned_cols=308 Identities=27% Similarity=0.420 Sum_probs=291.3
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 45 ml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~ 124 (546)
T 3p9d_F 45 MLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEI 124 (546)
T ss_dssp EEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHH
T ss_pred EEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++.+++.+..+++.|.++|+|++++|+.+.+.+.|+++++||+..+.+.....+|+++|+|++++|++.
T Consensus 125 A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~ 204 (546)
T 3p9d_F 125 ARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSP 204 (546)
T ss_dssp HHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTTHHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCT
T ss_pred HHHHHHHHHHHhhccccccccCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCc
Confidence 99999999999977665433578999999999999999999999999999999999975333468899999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG--- 237 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~--- 237 (315)
.||++++|++|++++.+++||++++||||++++|||++++++.++++.++++++++.+.++|++++++.+++|...+
T Consensus 205 ~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v 284 (546)
T 3p9d_F 205 KDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEV 284 (546)
T ss_dssp TTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cccEEEeeEEEecccccccCcceecCceEEEecCcccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ------C-cEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 238 ------A-TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 238 ------~-~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
+ +|||++++|++.|++||.++||++++++++++|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 285 ~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~ 362 (546)
T 3p9d_F 285 CGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEE 362 (546)
T ss_dssp --------CEEEESSCCCHHHHHHHTTTTCEEECCCCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSC
T ss_pred hhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCc
Confidence 2 3999999999999999999999999999999999999999999999999999999999999999988764
No 20
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=8.1e-67 Score=507.66 Aligned_cols=304 Identities=26% Similarity=0.363 Sum_probs=287.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+|+|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 39 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~ 118 (512)
T 3iyg_Q 39 MVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEI 118 (512)
T ss_pred EEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhhhCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCCc
Q psy9923 81 AAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKL 160 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~~ 160 (315)
|++.++++|++++...+.+..+++.|.++|+|+++||+.+ ++++|++|+++|+.++++.+ ..+|+++|+|.++.|+++
T Consensus 119 A~~~a~~~L~~~~~~~~~~~~~~~~l~~va~tsl~sK~~~-~~~~i~~livdAv~~V~~~~-~~i~v~~I~i~k~~Ggs~ 196 (512)
T 3iyg_Q 119 ACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG-NEVFLAKLIAQACVSIFPDS-GHFNVDNIRVCKILGSGV 196 (512)
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCcc-chHHHHHHHHHHHHHHhccC-CcccHhHeeEeeccCCCc
Confidence 9999999999985433334457899999999999999876 68999999999999998631 247888999999999999
Q ss_pred ccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 161 EDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 161 ~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
.||++++|++|++++.+ ||++++|+||+++++||++.+++.++++.+++++++..+.++|+++++++++++.+.|+||
T Consensus 197 ~ds~lv~G~~~dk~~~~--~~~~~~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~v 274 (512)
T 3iyg_Q 197 HSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANV 274 (512)
T ss_pred ccceEEeeEEEecCcCC--CCcccccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999975 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeeee
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMFK 308 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~ 308 (315)
|+++++|++.+++||.++||.+++++++.+|+|||++|||+++++++++++++||+|++|+++++|.+
T Consensus 275 vi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~ 342 (512)
T 3iyg_Q 275 VVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDT 342 (512)
T ss_pred EEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999764
No 21
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=4.4e-68 Score=519.43 Aligned_cols=304 Identities=30% Similarity=0.492 Sum_probs=287.8
Q ss_pred CcccCCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL 80 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~g~~~ 80 (315)
||+++.|+++|||||+|||++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++||++
T Consensus 52 ml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~ 131 (550)
T 3p9d_G 52 LIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRK 131 (550)
T ss_dssp EEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHH
T ss_pred EEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCC-CCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccCCC
Q psy9923 81 AAQCAVKHLETIADSFPVN-PDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGK 159 (315)
Q Consensus 81 a~~~~~~~L~~~s~~i~~~-~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G~~ 159 (315)
|++.++++|++++.+++.+ ..+++.|.++|+|+++||+.+.|+++|++|++||+.++++ +++|+++|.|+++.|++
T Consensus 132 A~~~a~~~L~~~s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~---~~~dl~~I~Vikv~Gg~ 208 (550)
T 3p9d_G 132 AVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSLDR---NDLDDKLIGIKKIPGGA 208 (550)
T ss_dssp HHHHHHHHHHHSEECCCCC------CHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHCCS---SSCCGGGCCCCBCCSSC
T ss_pred HHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHhccCccccccHhHHHHHHHHHHHHhCc---cccCchheeEEEecCCC
Confidence 9999999999997766432 1127889999999999999999999999999999999984 46888999999999999
Q ss_pred cccccceeEEEEecCCCCC---CCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 160 LEDTMLVKGVVIDKDFSHP---QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~---~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++||++++|++|++++.++ .||++++||||++++++|++++++.++++.+++++++..+.+.|++++++++++|.+.
T Consensus 209 ~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~ 288 (550)
T 3p9d_G 209 MEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEET 288 (550)
T ss_dssp GGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeEEeeEEEeccccccccccCcccccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988 5789999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|++||+++++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|++|+++++|.
T Consensus 289 g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~ 359 (550)
T 3p9d_G 289 GANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGS 359 (550)
T ss_dssp TCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSS
T ss_pred CCCEEEECCCccHHHHHHHHHcCCccccCcCHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988865
No 22
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=2.2e-66 Score=506.21 Aligned_cols=302 Identities=34% Similarity=0.497 Sum_probs=283.8
Q ss_pred Cccc-CCCCeEEecChHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHc-CCChhHHHHHH
Q psy9923 1 MMVS-SDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDK-GIHPIRIADGF 78 (315)
Q Consensus 1 mi~~-~~g~~~iTnDG~tIl~~l~i~hP~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~-gi~p~~i~~g~ 78 (315)
||++ +.|+|+|||||+||+++|+++||+|+|++++|++||+++||||||++|||++||+++.+++.+ |+||+.|++||
T Consensus 45 ml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~ 124 (527)
T 3p9d_B 45 LLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGY 124 (527)
T ss_dssp EEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHH
T ss_pred EEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6888 899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCC-CChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEeccC
Q psy9923 79 ELAAQCAVKHLETIADSFPVNP-DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVG 157 (315)
Q Consensus 79 ~~a~~~~~~~L~~~s~~i~~~~-~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~G 157 (315)
++|++.++++|++++.++..+. .+++.|.++|+||++||+.+.|+++|++|+++|+.++++. .|++.|+|+++.|
T Consensus 125 ~~A~~~a~~~L~~~s~~v~~~~~~~~~~l~~vA~tSl~sK~~~~~~~~i~~li~dAv~~V~~~----~~~~~I~V~k~~g 200 (527)
T 3p9d_B 125 RLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGS----TNLEHIQIIKILG 200 (527)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCHHHHHHHHHHHHHHHHTTSGGGGGHHHHHHHHHHHHHTTCTT----CCTTSSCCCBCCC
T ss_pred HHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHhccc----CCcceEEEEEcCC
Confidence 9999999999999976654210 1178999999999999999999999999999999999852 2667899999999
Q ss_pred CCcccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCC-CcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 158 GKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPK-TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 158 ~~~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~-~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++..||++++|++|++++.+++ |++++||||++++++|++++++ +++++.+++++++..+.++|++++++++++|.+.
T Consensus 201 g~~~ds~lv~G~~~dk~~~~~~-p~~~~n~kIlll~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~ 279 (527)
T 3p9d_B 201 GKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF 279 (527)
T ss_dssp SSSSCCCEESSCCCSCCCSSSC-CSCCSSCEEEEECSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccEEEEeEEEecccCCCC-CeeeecceEEEeccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999987 9999999999999999999999 5889999999999999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
|++||+++++|++.+++||.++||.+++++++.+|+|+|++|||+++++++++++++||+|++|+++++|.
T Consensus 280 g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~ 350 (527)
T 3p9d_B 280 GINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGE 350 (527)
T ss_dssp CCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSS
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988874
No 23
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=2.6e-54 Score=420.48 Aligned_cols=260 Identities=23% Similarity=0.384 Sum_probs=237.2
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+|+|||||+||+++|+++|| +|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++
T Consensus 38 mi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~ 117 (547)
T 1kp8_A 38 VLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKR 117 (547)
T ss_dssp EECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|++.+++.|++++.+++ +++.|.++|++++++ ++++++++++|+.++++ ++. |+|+ .
T Consensus 118 G~~~A~~~a~~~L~~~s~~v~----~~e~l~~vA~iS~~~------~~~i~~liadAv~~V~~---dg~----I~Ve--~ 178 (547)
T 1kp8_A 118 GIDKAVTVAVEELKALSVPCS----DSKAIAQVGTISANS------DETVGKLIAEAMDKVGK---EGV----ITVE--D 178 (547)
T ss_dssp HHHHHHHHHHHHHHHHCBCCC----SHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHCT---TSE----EEEE--C
T ss_pred HHHHHHHHHHHHHHHhCcCCC----CHHHHHHHHHHhccc------hhHHHHHHHHHHHHhCc---CCc----EEEE--e
Confidence 999999999999999977664 689999999999875 69999999999999984 233 7776 7
Q ss_pred CCCcccc-cceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDT-MLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~dS-~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|+++++| ++++|++|+++|.+++| ++.++||+|++++++ +++++++ .+
T Consensus 179 G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~-------------Is~~~~l-----------~~ 234 (547)
T 1kp8_A 179 GTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKK-------------ISNIREM-----------LP 234 (547)
T ss_dssp CSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESE-------------ECCGGGT-----------HH
T ss_pred CCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCc-------------CCCHHHH-----------HH
Confidence 9999999 99999999999999875 456899999999995 4556665 57
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC-----------CeeecCChhhHHHHHHHHCCeeccC-----CCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQL-----------PAVRWVGGPDIELIAIVTGGRIVPR-----FEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I-----------~~i~~v~~~~l~~ls~~tGa~ii~~-----l~~l~~~ 292 (315)
+++++.+.|+||||++++|+++|+++|..|+| .+++++++++|+|||++|||+++++ +++++++
T Consensus 235 ~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~ 314 (547)
T 1kp8_A 235 VLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLE 314 (547)
T ss_dssp HHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTT
T ss_pred HHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHH
Confidence 89999999999999999999999999999776 3444889999999999999999995 9999999
Q ss_pred CceeeeeEEEE
Q psy9923 293 KLGKAGLVRQT 303 (315)
Q Consensus 293 ~lG~~~~v~~~ 303 (315)
+||+|++|++.
T Consensus 315 ~LG~a~~v~~~ 325 (547)
T 1kp8_A 315 DLGQAKRVVIN 325 (547)
T ss_dssp TSEEEEEEEEC
T ss_pred HCCceeEEEEc
Confidence 99999999884
No 24
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=1e-53 Score=416.78 Aligned_cols=259 Identities=27% Similarity=0.399 Sum_probs=235.5
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+++|+++|| +|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++
T Consensus 38 mi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~ 117 (543)
T 1we3_A 38 VLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKR 117 (543)
T ss_dssp EECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|++.+++.|++++.+++ +++.|.++|+++++ +++++++++||+.++++ ++. |.|+ .
T Consensus 118 G~~~A~~~a~~~L~~~s~~v~----~~~~l~~vA~iS~~-------~~~i~~li~dAv~~V~~---~g~----I~Ve--~ 177 (543)
T 1we3_A 118 GIEKAVEAAVEKIKALAIPVE----DRKAIEEVATISAN-------DPEVGKLIADAMEKVGK---EGI----ITVE--E 177 (543)
T ss_dssp HHHHHHHHHHHHHHHTCBCCC----SHHHHHHHHHHHHT-------CHHHHHHHHHHHHTTCT---TSE----EEEE--E
T ss_pred HHHHHHHHHHHHHHHhcccCC----CHHHHHHhhhhhcC-------CHHHHHHHHHHHHHhCc---CCc----EEEe--c
Confidence 999999999999999976653 68899999998876 48999999999999984 233 7776 6
Q ss_pred CCCcccc-cceeEEEEecCCCCCCC-------CceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDT-MLVKGVVIDKDFSHPQM-------PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~dS-~~i~G~vl~~~~~~~~~-------~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++++|| ++++|++|+++|.+++| ++.++||+|++++++ +++++++ .+
T Consensus 178 G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~-------------Is~~~~l-----------~~ 233 (543)
T 1we3_A 178 SKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNVREL-----------LP 233 (543)
T ss_dssp CSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSC-------------BCCHHHH-----------HH
T ss_pred CCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCC-------------cCCHHHH-----------HH
Confidence 9999999 99999999999999864 556899999999985 4566665 58
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC------Ceee-----cCChhhHHHHHHHHCCeeccC-----CCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQL------PAVR-----WVGGPDIELIAIVTGGRIVPR-----FEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I------~~i~-----~v~~~~l~~ls~~tGa~ii~~-----l~~l~~~ 292 (315)
+++++.+.|+||||++++|+++|+++|..|+| .+++ ++++++|+|||++|||+++++ +++++++
T Consensus 234 ~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~ 313 (543)
T 1we3_A 234 ILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLS 313 (543)
T ss_dssp HHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGG
T ss_pred HHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHH
Confidence 89999999999999999999999999999654 4444 889999999999999999996 8999999
Q ss_pred CceeeeeEEEE
Q psy9923 293 KLGKAGLVRQT 303 (315)
Q Consensus 293 ~lG~~~~v~~~ 303 (315)
+||+|++|++.
T Consensus 314 ~LG~a~~v~~~ 324 (543)
T 1we3_A 314 MLGRAERVRIT 324 (543)
T ss_dssp GCEEEEEEEEC
T ss_pred HCCCceEEEEE
Confidence 99999999874
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=1.5e-54 Score=422.40 Aligned_cols=260 Identities=23% Similarity=0.375 Sum_probs=206.0
Q ss_pred CcccCCCCeEEecChHHHHhhccccCh----HHHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP----~a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+++|||||+||+|+|+++|| +|+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++
T Consensus 39 mi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~ 118 (545)
T 1iok_A 39 VIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKR 118 (545)
T ss_dssp EECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|++.+++.|++++.+++ +++.|.++|++++++ ++++++++++|+.++++ ++. |+|+ .
T Consensus 119 G~~~A~~~a~~~L~~~s~~v~----~~e~l~~va~iS~~~------~~~i~~li~dAv~~V~~---~g~----I~Ve--~ 179 (545)
T 1iok_A 119 GIDVATAKVVEAIKSAARPVN----DSSEVAQVGTISANG------ESFIGQQIAEAMQRVGN---EGV----ITVE--E 179 (545)
T ss_dssp HHHHHHHHHHHHHHTTCBCCC----STTTTTHHHHHTTTT------CHHHHHHHHHHHHHHCT---TSC----CCCE--E
T ss_pred HHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHhhcCC------chhHHHHHHHHHHHhcc---CCe----EEEE--e
Confidence 999999999999999977664 567899999998875 69999999999999985 233 6665 6
Q ss_pred CCCcccc-cceeEEEEecCCCCCC-------CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDT-MLVKGVVIDKDFSHPQ-------MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFAS 228 (315)
Q Consensus 157 G~~~~dS-~~i~G~vl~~~~~~~~-------~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~ 228 (315)
|++++|| ++++|++|++++.+++ |++.++||+|++++++++ +++++ .+
T Consensus 180 G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~-------------~~~~l-----------~~ 235 (545)
T 1iok_A 180 NKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS-------------SLQPM-----------VP 235 (545)
T ss_dssp CSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-------------CCCC--------------
T ss_pred CCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-------------CHHHH-----------HH
Confidence 9999999 9999999999999986 455689999999999754 33443 57
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCC-----------CeeecCChhhHHHHHHHHCCeeccC-----CCCCCCC
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQL-----------PAVRWVGGPDIELIAIVTGGRIVPR-----FEELTSE 292 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I-----------~~i~~v~~~~l~~ls~~tGa~ii~~-----l~~l~~~ 292 (315)
+++++.+.|+||||++++|+++|+++|..|+| .+++++++++|+|||++|||+++++ +++++++
T Consensus 236 ~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~ 315 (545)
T 1iok_A 236 LLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTID 315 (545)
T ss_dssp --------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHHHHHHHHHTC---------------CT
T ss_pred HHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHHHHHHHhcCCeeecccccCCcccCCHH
Confidence 88999999999999999999999999999876 3445899999999999999999996 9999999
Q ss_pred CceeeeeEEEE
Q psy9923 293 KLGKAGLVRQT 303 (315)
Q Consensus 293 ~lG~~~~v~~~ 303 (315)
+||+|++|++.
T Consensus 316 ~LG~a~~v~~~ 326 (545)
T 1iok_A 316 MLGRAKKVSIN 326 (545)
T ss_dssp TSEEEEEEEEC
T ss_pred HcCcCcEEEEe
Confidence 99999999875
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=7.4e-53 Score=409.38 Aligned_cols=259 Identities=27% Similarity=0.349 Sum_probs=201.7
Q ss_pred CcccCCCCeEEecChHHHHhhccccChH----HHHHHHHHHhhhhhcCCChhHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy9923 1 MMVSSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIAD 76 (315)
Q Consensus 1 mi~~~~g~~~iTnDG~tIl~~l~i~hP~----a~ll~~~a~~~~~~~GDGttt~viLa~~ll~~~~~li~~gi~p~~i~~ 76 (315)
||+++.|+|+|||||+||+++|+++||+ |+|++++|++||+++||||||++|||++||+++.+++.+|+||+.|++
T Consensus 38 ml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~ 117 (546)
T 3rtk_A 38 VLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKR 117 (546)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHTSCC-------CHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7889999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHhcccccCCCCccceEEEecc
Q psy9923 77 GFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKV 156 (315)
Q Consensus 77 g~~~a~~~~~~~L~~~s~~i~~~~~~~~~l~~ia~t~l~~k~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~I~i~~~~ 156 (315)
||++|++.++++|++++.+++ +++.|.++|+++++ ++.+++++++|+.++++ +++ |.|++..
T Consensus 118 G~~~A~~~a~e~L~~~s~~v~----~~e~L~~vA~iS~~-------~~~i~~liadAv~~V~~---dgv----I~Ve~~~ 179 (546)
T 3rtk_A 118 GIEKAVEKVTETLLKGAKEVE----TKEQIAATAAISAG-------DQSIGDLIAEAMDKVGN---EGV----ITVEESN 179 (546)
T ss_dssp HHHHHHHHHHHHHHHTCBCCC----SHHHHHHHHHHHHT-------CHHHHHHHHHHHHHSCT---TSE----EEEECCS
T ss_pred HHHHHHHHHHHHHHHhcccCC----ChHHHHhHeEEeCC-------chHHHHHHHHHHHHhcc---CCc----eEEEecC
Confidence 999999999999999976654 68899999999886 47899999999999985 333 8888633
Q ss_pred CCCcccccceeEEEEecCCCCCC-------CCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHH
Q psy9923 157 GGKLEDTMLVKGVVIDKDFSHPQ-------MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASM 229 (315)
Q Consensus 157 G~~~~dS~~i~G~vl~~~~~~~~-------~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~ 229 (315)
+...||++++|++|++++.+|+ ||+.++||+|++++++ +++++++ .++
T Consensus 180 -~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~k-------------Is~~~~l-----------~~~ 234 (546)
T 3rtk_A 180 -TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSK-------------VSTVKDL-----------LPL 234 (546)
T ss_dssp -SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSE-------------ECCSTTT-----------HHH
T ss_pred -CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCc-------------cCCHHHH-----------HHH
Confidence 3456899999999999999984 5778999999999984 4566665 578
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCC---CC---eee-----cCChhhHHHHHHHHCCeecc-----CCCCCCCCC
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQ---LP---AVR-----WVGGPDIELIAIVTGGRIVP-----RFEELTSEK 293 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~---I~---~i~-----~v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~ 293 (315)
++++.+.|+||||++++|+++|+++|..|+ ++ +++ +.++++|+|||++|||++++ +++++++++
T Consensus 235 le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~ 314 (546)
T 3rtk_A 235 LEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSL 314 (546)
T ss_dssp HHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTT
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccchhhHHHHHHHhCCEEeeccccCccccCCHhh
Confidence 999999999999999999999999999765 33 332 44689999999999999999 589999999
Q ss_pred ceeeeeEEE
Q psy9923 294 LGKAGLVRQ 302 (315)
Q Consensus 294 lG~~~~v~~ 302 (315)
||+|++|++
T Consensus 315 LG~a~~v~i 323 (546)
T 3rtk_A 315 LGKARKVVV 323 (546)
T ss_dssp SEEEEEEEE
T ss_pred CCeeEEEEE
Confidence 999999985
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=2.8e-36 Score=253.98 Aligned_cols=148 Identities=27% Similarity=0.503 Sum_probs=130.4
Q ss_pred cccccceeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Q psy9923 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239 (315)
Q Consensus 160 ~~dS~~i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~ 239 (315)
++||++++|++|++++.+++||++++||||+++++||+++++++++++.++++++++.+.++|++++++++++|.+.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCcee-eeeEEEEEeee
Q psy9923 240 LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK-AGLVRQTQTMF 307 (315)
Q Consensus 240 lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~ 307 (315)
||+++++|+|.|++||+++||++++++++++|+|||++|||+++++++++++++||+ |+.|+++++|.
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~ 149 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD 149 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETT
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999 99999999985
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=100.00 E-value=9.4e-36 Score=246.01 Aligned_cols=142 Identities=31% Similarity=0.541 Sum_probs=139.7
Q ss_pred eeEEEEecCCCCCCCCceeeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecC
Q psy9923 166 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQW 245 (315)
Q Consensus 166 i~G~vl~~~~~~~~~~~~~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~ 245 (315)
++|++|++++++++||++++||||+++++||+++++++++++.++++++++.+.++|++++++++++|.+.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCCCCCCCCceeeeeEEEEEeee
Q psy9923 246 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVRQTQTMF 307 (315)
Q Consensus 246 ~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~ 307 (315)
+|+|.|++||+++||++++++++++|+|||++|||+++++++++++++||+|+.|+++++|.
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~ 142 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD 142 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETT
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 29
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.48 E-value=2.1e-14 Score=113.52 Aligned_cols=113 Identities=28% Similarity=0.365 Sum_probs=94.6
Q ss_pred EEEEecCCCCCCCCce-------eeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCCcE
Q psy9923 168 GVVIDKDFSHPQMPKE-------LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240 (315)
Q Consensus 168 G~vl~~~~~~~~~~~~-------~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~l 240 (315)
|+-|+++|.+|||.++ ++||.|++ ++-++++.+++ .++++++.+.+.+|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILi-------------tdkKIs~i~~l-----------lP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILI-------------VEKKVSNVREL-----------LPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEE-------------ESSEECCHHHH-----------HHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEE-------------ecccccCHHHH-----------HHHHHHHHHHCCCE
Confidence 7899999999998665 35677666 44478899887 79999999999999
Q ss_pred EEecCCCCHHHHHHHHhCCCCeee-----------cCChhhHHHHHHHHCCeecc-----CCCCCCCCCceeeeeEEEEE
Q psy9923 241 AICQWGFDDEANHLLLQKQLPAVR-----------WVGGPDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLVRQTQ 304 (315)
Q Consensus 241 Vi~~~~I~~~al~~l~~~~I~~i~-----------~v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ 304 (315)
+|++.+|+.+|+..|.-|++.... .-++..|++||.+|||++++ ++++.+.++||+|++|.+.+
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vtk 136 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITK 136 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEECS
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEcC
Confidence 999999999999999887665322 22699999999999999998 36777888999999998754
No 30
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.47 E-value=1.7e-14 Score=119.53 Aligned_cols=117 Identities=27% Similarity=0.372 Sum_probs=98.3
Q ss_pred cceeEEEEecCCCCCCCCce-------eeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy9923 164 MLVKGVVIDKDFSHPQMPKE-------LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236 (315)
Q Consensus 164 ~~i~G~vl~~~~~~~~~~~~-------~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~ 236 (315)
++++|+-|+++|.+|||.++ ++||.|++ ++-++++..++ .++++++.+.
T Consensus 3 evvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILi-------------tdkKIs~i~~i-----------lP~LE~~~~~ 58 (194)
T 3m6c_A 3 EFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILL-------------HQDKISSLPDL-----------LPLLEKVAGT 58 (194)
T ss_dssp CCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEE-------------BSSEECCHHHH-----------HHHHHHHHHH
T ss_pred EEEeeeEccCcccCceeeeccCCcEEEEecceEEE-------------EcCccCCHHHH-----------HHHHHHHHHh
Confidence 68899999999999998654 46677666 44478898887 7999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHhCCCCe------ee-----cCChhhHHHHHHHHCCeecc-----CCCCCCCCCceeeeeE
Q psy9923 237 GATLAICQWGFDDEANHLLLQKQLPA------VR-----WVGGPDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLV 300 (315)
Q Consensus 237 ~~~lVi~~~~I~~~al~~l~~~~I~~------i~-----~v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~lG~~~~v 300 (315)
+.+|+|++.+|+.+|+..|.-|++.. ++ .-++..|++||.+|||++++ ++++.+.++||+|++|
T Consensus 59 ~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v 138 (194)
T 3m6c_A 59 GKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRV 138 (194)
T ss_dssp TCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEE
T ss_pred CCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEE
Confidence 99999999999999999998766543 22 22588999999999999998 4678888999999999
Q ss_pred EEEE
Q psy9923 301 RQTQ 304 (315)
Q Consensus 301 ~~~~ 304 (315)
.+.+
T Consensus 139 ~vtk 142 (194)
T 3m6c_A 139 VVSK 142 (194)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8854
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.43 E-value=8.9e-14 Score=115.43 Aligned_cols=115 Identities=19% Similarity=0.305 Sum_probs=96.1
Q ss_pred eeEEEEecCCCCCCCCce-------eeeceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q psy9923 166 VKGVVIDKDFSHPQMPKE-------LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238 (315)
Q Consensus 166 i~G~vl~~~~~~~~~~~~-------~~~~kI~ll~~~L~~~~~~~~~~~~i~s~~~~~~~~~~E~~~~~~~~~~i~~~~~ 238 (315)
-+|+-|+++|.+|||.++ ++||.|++ ++-++++.+++ .++++++.+.+.
T Consensus 12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILi-------------tdkKIs~i~~i-----------lP~LE~v~~~~r 67 (201)
T 3osx_A 12 SEGMQFDRGYLSPYFINKPESGSVELENPYILL-------------VDKKISNIREL-----------LPVLEGVAKASK 67 (201)
T ss_dssp CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEE-------------EEEEECCHHHH-----------HHHHHHHHTSSC
T ss_pred ccccEecCccCChheeecccCCEEEecCCeEEE-------------EcCccCCHHHH-----------HHHHHHHHHhCC
Confidence 369999999999998765 35566655 66678999987 799999999999
Q ss_pred cEEEecCCCCHHHHHHHHhCCCCe------ee-----cCChhhHHHHHHHHCCeecc-----CCCCCCCCCceeeeeEEE
Q psy9923 239 TLAICQWGFDDEANHLLLQKQLPA------VR-----WVGGPDIELIAIVTGGRIVP-----RFEELTSEKLGKAGLVRQ 302 (315)
Q Consensus 239 ~lVi~~~~I~~~al~~l~~~~I~~------i~-----~v~~~~l~~ls~~tGa~ii~-----~l~~l~~~~lG~~~~v~~ 302 (315)
+|+|++.+|+.+|+..|.-|++.. ++ .-++..|++||.+|||++++ ++++.+.++||+|++|.+
T Consensus 68 pLlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~v 147 (201)
T 3osx_A 68 PLVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVI 147 (201)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred CeEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEE
Confidence 999999999999999998766543 22 22588999999999999998 467888899999999988
Q ss_pred EE
Q psy9923 303 TQ 304 (315)
Q Consensus 303 ~~ 304 (315)
.+
T Consensus 148 tk 149 (201)
T 3osx_A 148 NK 149 (201)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 32
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=84.95 E-value=2.3 Score=32.97 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=40.9
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
..+.|.+.++++|+|. .|.+.+...|.++||.++.....+.-+-|.....+++
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~L 120 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQL 120 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC-
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCCC
Confidence 4466677899999996 7999999999999999998766555555666655553
No 33
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.28 E-value=2.9 Score=31.42 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=41.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.|...++++|+|. .|.+.+...|.++||.++.....+.-+-|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 35566777899999996 699999999999999999876554445566655555
No 34
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=80.53 E-value=3.6 Score=30.87 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCCh-hhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG-PDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~-~~l~~ls~~tGa~i 282 (315)
...+.|...++++|+|. .|.+.+...|.++||.++..... ..-+-|.....+.+
T Consensus 58 ~~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g~L 112 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDGQV 112 (120)
T ss_dssp HHHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcCCC
Confidence 35566677899999996 69999999999999999987654 44455555555444
No 35
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=79.39 E-value=3.9 Score=30.83 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..+.|...|+++|+|. .|.+.+...|.++||.++.....+.-+-|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 4456678899999996 699999999999999999876554445566656555
No 36
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=78.26 E-value=4.3 Score=30.16 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 229 MVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 229 ~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..+.+...|+++|+|. .|.+.+...|.++||.++.....+.-+-|.....++
T Consensus 54 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIAS-NVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHHTTTCCEEECS-SCCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 3455667899999996 699999999999999999876655555566666555
No 37
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=76.09 E-value=6.3 Score=30.41 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.|...++++|||. +|.+.+...|.+ ||.++.......-+-|.....+.
T Consensus 70 ~~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 45566777899999996 799999999999 99999876534444555555555
No 38
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=67.59 E-value=14 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=37.8
Q ss_pred HHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 231 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 231 ~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
+.+...++++|+|. ++.+.+...|.++ |.++.....+.-+-|.....+++
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~g~L 99 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSKK-IEIYHAEGDDVDKNISLFIEGEL 99 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHTT-CEEEECCSSCHHHHHHHHHTTCS
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHhc-cEEEECCCCCHHHHHHHHHcCCC
Confidence 55566899999995 7999999999999 99998665444455555555443
No 39
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=51.97 E-value=42 Score=25.10 Aligned_cols=50 Identities=8% Similarity=0.005 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGG 280 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa 280 (315)
..++.+.+-.+.+|+.+.++++. ...+|.++||..+.--++. +|..++|.
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~---eLG~a~g~ 81 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQ---DLGAAGAT 81 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHH---HHHHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH---HHHHHhCC
Confidence 45566777789999999999994 4467889999987765664 55666773
No 40
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=51.24 E-value=43 Score=25.34 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCcEEEecCCCCH-----HHHHHHHhCCCCeeecCChhhHHHHHHHHCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDD-----EANHLLLQKQLPAVRWVGGPDIELIAIVTGG 280 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~-----~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa 280 (315)
..++.+.+-.+.+|+.+.+.+| ....++.+++|.++.--++ .+|.+++|-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk---~~LG~a~G~ 85 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKR---ASLGEYLGH 85 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCS---HHHHHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCH---HHHHHHHCC
Confidence 4556667778999999999975 4567889999999864444 567777774
No 41
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=48.91 E-value=37 Score=29.62 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC-C-------------------------hhhHHHHHHHHCCe
Q psy9923 231 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV-G-------------------------GPDIELIAIVTGGR 281 (315)
Q Consensus 231 ~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v-~-------------------------~~~l~~ls~~tGa~ 281 (315)
++|.+.+++|||.....++...+.|.+.||.++..- . .+.++.+++++|-.
T Consensus 78 E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 78 ESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 678888999999876667778899999999876521 1 36788999999965
No 42
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=47.58 E-value=56 Score=23.44 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
...+.+.+-.+.+||.+.+.++... +++..++|.++..-++ +.|..++|-..
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~---~eLG~A~Gk~~ 81 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESR---AVLGRSIGKEA 81 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCH---HHHHHHTTSSC
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechH---HHHHhhhCccc
Confidence 4556667778899999999999654 4567899998877555 55777788653
No 43
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=44.21 E-value=44 Score=23.00 Aligned_cols=51 Identities=10% Similarity=-0.006 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..++.+.+-.+.+|+.+.+.++... .++.+++|.++.--++ ++|..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk---~eLG~a~Gk~ 72 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESM---KKLGKACGIE 72 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH---HHHHHHHTCS
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHhCCC
Confidence 4556666677899999999998754 4557899998876666 4566666643
No 44
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=42.23 E-value=65 Score=27.36 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=39.5
Q ss_pred HHHHHHCCCcEEEecCCC-CHHHHHHHHhCCCCeeec-C--C----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGF-DDEANHLLLQKQLPAVRW-V--G----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I-~~~al~~l~~~~I~~i~~-v--~----~~~l~~ls~~tGa~ 281 (315)
+|+|...+++|||..... ++.....|.+.||.++.- - + .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 477888999999987653 567788999999877642 1 2 46788888999864
No 45
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=41.85 E-value=58 Score=23.31 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+||.+.+.++... +++.+++|.++..-++ +.|..++|-.
T Consensus 25 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~---~eLG~a~Gk~ 79 (101)
T 3on1_A 25 QVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNR---QMLGRAIGKH 79 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH---HHHHHHTTSS
T ss_pred HHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCCc
Confidence 4556667777899999999998654 4567789998875555 5577777765
No 46
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=40.31 E-value=36 Score=26.09 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..++.+.+-.+.+|+.+.++++. ...+|.++||..+.--++ ++|.+++|-.
T Consensus 39 ~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk---~eLG~a~G~~ 94 (134)
T 2ale_A 39 EATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSR---VALGRACGVS 94 (134)
T ss_dssp HHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCH---HHHHHHTTCS
T ss_pred HHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCC
Confidence 45566667778999999999995 557888999997766555 4677777754
No 47
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=40.29 E-value=87 Score=23.01 Aligned_cols=52 Identities=8% Similarity=0.122 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHH----HHHHHhCCCCeeec-CChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEA----NHLLLQKQLPAVRW-VGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~a----l~~l~~~~I~~i~~-v~~~~l~~ls~~tGa~ 281 (315)
...++.|.+-.+.+||.+.+.++.. .+++..++|.++.. -++.+ |..++|-.
T Consensus 32 ~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~e---LG~A~Gk~ 88 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVD---LGTACGKY 88 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCT---HHHHHCTT
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHH---HHHHhCCc
Confidence 4556777777899999999999854 46678899998876 55554 56666643
No 48
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=39.89 E-value=54 Score=28.39 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=38.6
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||.....++...+.|.+.+..++-... .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 36777889999998766778888899988865544322 45678888888864
No 49
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=39.72 E-value=30 Score=26.79 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.8
Q ss_pred CCCcEEEecCCCCHHHHHHHHhCCCCeeecC-C---hhhHHHHHHHHCCeeccCC
Q psy9923 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWV-G---GPDIELIAIVTGGRIVPRF 286 (315)
Q Consensus 236 ~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v-~---~~~l~~ls~~tGa~ii~~l 286 (315)
.++++|||. +|.+-+...|.++||.++... . .+.++++.....+.+.+.+
T Consensus 66 ~g~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~p~wl 119 (145)
T 1p90_A 66 QDCQVLYVV-SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSPPPWL 119 (145)
T ss_dssp TTCSEEEES-BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCCCHHH
T ss_pred CCCCEEEEC-CCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCChHHH
Confidence 489999995 799999999999999999863 2 4455555555555554433
No 50
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=38.90 E-value=35 Score=28.54 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=37.3
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeee-cC-C----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVR-WV-G----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~-~v-~----~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||.....++.....|.+.||.++. .. + .+.++.++.++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 36678889999998766666777888888887553 11 1 45677788888854
No 51
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=36.93 E-value=71 Score=26.51 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=39.5
Q ss_pred HHHHHHCCCcEEEecCCCC-HHHHHHHHhCCCCeeec---CC----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFD-DEANHLLLQKQLPAVRW---VG----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~-~~al~~l~~~~I~~i~~---v~----~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||...... ......|.+.||.++.- -+ .+.++.++.++|..
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 4778889999999987664 56778899999877642 12 45688899999964
No 52
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=36.47 E-value=79 Score=22.74 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeee-cCChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVR-WVGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~-~v~~~~l~~ls~~tGa~ 281 (315)
....+.|.+-.+.+||.+.+.++... +++.+++|.++. .-++ +.|..++|-.
T Consensus 28 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~---~eLG~a~Gk~ 84 (104)
T 4a18_G 28 KSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSN---VELGTACGKY 84 (104)
T ss_dssp HHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCH---HHHHHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCH---HHHHHHhCCc
Confidence 45566777778999999999998544 455667898885 4455 4577777743
No 53
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=35.80 E-value=51 Score=27.29 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHHHHCCCcEEEecC-CCCHHHHHHHHhCCCCeeecC--C----hhhHHHHHHHHCC
Q psy9923 230 VDKVKATGATLAICQW-GFDDEANHLLLQKQLPAVRWV--G----GPDIELIAIVTGG 280 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~-~I~~~al~~l~~~~I~~i~~v--~----~~~l~~ls~~tGa 280 (315)
+|+|.+.+++|||... ..++...+.|.+.||.++.-- . .+.++.+++++|-
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~ 107 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 107 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHGGGCSC
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 3677788999999853 466777888888888776421 1 3445666666664
No 54
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=34.82 E-value=51 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeec-CC----------hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRW-VG----------GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~-v~----------~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||....-.+.+.+.+.+.||.++.- .. .+.++.+++++|..
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 366777899999987653445666778888877642 11 56678888888864
No 55
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=34.45 E-value=86 Score=23.17 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.+.++. ...++.+++|..+..-++. +|..++|-.
T Consensus 36 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~---eLG~a~G~~ 91 (120)
T 1vq8_F 36 ETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQD---DLGHAAGLE 91 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHH---HHHHHTTCS
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCC
Confidence 44566666778999999999874 3467888999976666664 566677765
No 56
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=33.79 E-value=66 Score=26.74 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=37.7
Q ss_pred HHHHHHCCCcEEEecCC-CCHHHHHHHHhCCCCeeec--C--C----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWG-FDDEANHLLLQKQLPAVRW--V--G----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~~--v--~----~~~l~~ls~~tGa~ 281 (315)
+|+|.+.+++|||.... .++...+.|.+.||.++.- . + .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 47788889999998654 4677788899999866532 1 2 33577888888854
No 57
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=33.02 E-value=76 Score=24.16 Aligned_cols=51 Identities=10% Similarity=-0.044 Sum_probs=37.3
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHH-----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEAN-----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al-----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.+.++.-. .++.+++|.++..-++ ++|..++|-.
T Consensus 48 ~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk---~eLG~a~G~~ 103 (135)
T 2aif_A 48 EATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSK---VALGRACGVS 103 (135)
T ss_dssp HHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCH---HHHHHHTTCS
T ss_pred HHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCH---HHHHHHhCCC
Confidence 4455666667889999999988632 5778899998866555 5677777754
No 58
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=32.96 E-value=71 Score=23.73 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.++++. ...++.+++|..+..-++. +|..++|-.
T Consensus 36 ~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~---eLG~a~G~~ 91 (120)
T 1xbi_A 36 EVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQ---DLGKAAGLE 91 (120)
T ss_dssp HHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHH---HHHHHTTCS
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHH---HHHHHhCCC
Confidence 45566667778999999999874 3467888999976666664 566666654
No 59
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=32.19 E-value=88 Score=27.96 Aligned_cols=68 Identities=12% Similarity=-0.044 Sum_probs=48.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH-HC------CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 210 QSVEDYKELRKYEQEKFASMVDKVK-AT------GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 210 ~s~~~~~~~~~~E~~~~~~~~~~i~-~~------~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
=|++++++| -..+++++++.++ +. ++++++...+- ...+.++.+.|+-++..-...++....+..|..
T Consensus 224 lsp~~f~ef---~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~~l~~~g~d~i~~d~~~dl~~a~~~~g~~ 298 (367)
T 1r3s_A 224 LGPQLFNKF---ALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALEELAQAGYEVVGLDWTVAPKKARECVGKT 298 (367)
T ss_dssp SCHHHHHHH---THHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSS
T ss_pred CCHHHHHHH---hHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCC
Confidence 356666544 4566777778887 55 57766554554 668889999999988766567888888888864
No 60
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=31.90 E-value=79 Score=27.30 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCeecc
Q psy9923 220 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGRIVP 284 (315)
Q Consensus 220 ~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ii~ 284 (315)
++|++++.+.++.|.+ .++.++=....+.+.....+.|.-.+..++ ..++-.++.-.|+.++-
T Consensus 64 eeE~~Rv~pvi~~l~~--~~v~iSIDT~~~~Va~~al~aGa~iINDVs~g~~d~~m~~~va~~~~~~vl 130 (270)
T 4hb7_A 64 EEELNRVLPVVEAIVG--FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIIL 130 (270)
T ss_dssp HHHHHHHHHHHHHHTT--SSSEEEEECSCHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhhc--CCCeEEEECCCHHHHHHHHHhccceeccccccccchhHHHHHHHcCCCeEE
Confidence 3477888999999975 456777778888888888888998888764 35666777778887774
No 61
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=31.41 E-value=1.9e+02 Score=25.19 Aligned_cols=57 Identities=25% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCe--e---e-cCChhhHHHHHHHHCCeecc
Q psy9923 224 EKFASMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPA--V---R-WVGGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 224 ~~~~~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~--i---~-~v~~~~l~~ls~~tGa~ii~ 284 (315)
++++++++. |++.+++|--.|..... .+.+.||.+ + - -.+...+++++..+|+.+=.
T Consensus 167 ~~Lk~KvdA----GAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP~ 233 (304)
T 3fst_A 167 LNLKRKVDA----GANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPA 233 (304)
T ss_dssp HHHHHHHHH----TCCEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHc----CCCEEEeCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCCH
Confidence 344555544 99999999999866653 345577652 2 1 34688999999999988754
No 62
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=31.24 E-value=93 Score=23.17 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.+.++. ...++.+++|..+..-++. +|..++|-.
T Consensus 35 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~---eLG~a~G~~ 90 (124)
T 2fc3_A 35 ETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKK---RLGEAAGIE 90 (124)
T ss_dssp HHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHH---HHHHHTTCS
T ss_pred HHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHhCCC
Confidence 44566666678999999999773 3467888999977666664 566677754
No 63
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=30.52 E-value=85 Score=27.45 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecC-C-----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWV-G-----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v-~-----~~~l~~ls~~tGa~ 281 (315)
+++|...+++|||.... .+...+.|.+.||.++.-- . .+.++.+++++|-.
T Consensus 109 ~E~i~al~PDLIi~~~~-~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~lg~e 165 (335)
T 4hn9_A 109 TEACVAATPDVVFLPMK-LKKTADTLESLGIKAVVVNPEDQSLLEECITLVGKITNNA 165 (335)
T ss_dssp HHHHHHTCCSEEEEEGG-GHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEEeCc-chhHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHHcCCH
Confidence 47888889999998765 5667788899998876521 1 45677788888854
No 64
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=30.14 E-value=1e+02 Score=23.00 Aligned_cols=51 Identities=16% Similarity=0.013 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.+.++. ...++.++||..+..-++ ++|.+++|-.
T Consensus 38 ~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk---~eLG~a~Gk~ 93 (122)
T 3o85_A 38 EALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSK---NALGRACNVS 93 (122)
T ss_dssp HHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCH---HHHHHHTTCS
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCH---HHHHHHhCCC
Confidence 45556666678999999999864 346788999997766555 4567777764
No 65
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=29.98 E-value=1e+02 Score=22.22 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHH----HHHHHhCCCCeeec-CChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEA----NHLLLQKQLPAVRW-VGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~a----l~~l~~~~I~~i~~-v~~~~l~~ls~~tGa~ 281 (315)
.+.++.|.+-.+.+||.+.+.++.. .+++..++|.++.. -++ +.|..++|-.
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~---~eLG~A~Gk~ 84 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGN---NELGTAVGKL 84 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCH---HHHHHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCH---HHHHHHhCCc
Confidence 3455677777889999999999855 45667789999854 444 4577778853
No 66
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=28.34 E-value=1.2e+02 Score=26.94 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 210 QSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 210 ~s~~~~~~~~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
-|++++. +.-..+++++++.+.+.++++++...+- ...+..+.+.|+-++..-...+++.+.+. |..
T Consensus 220 lsp~~f~---ef~~p~~~~i~~~i~~~g~~~i~~~~G~-~~~l~~l~~~g~d~~~~d~~~d~~~~~~~-g~~ 286 (359)
T 2inf_A 220 LNQADYR---TYIKPVMNRIFSELAKENVPLIMFGVGA-SHLAGDWHDLPLDVVGLDWRLGIDEARSK-GIT 286 (359)
T ss_dssp SCHHHHH---HHTHHHHHHHHHHHGGGCSCEEEECTTC-GGGHHHHHTSSCSEEECCTTSCHHHHHHT-TCC
T ss_pred CCHHHHH---HHhHHHHHHHHHHHHHcCCcEEEEcCCc-HHHHHHHHHhCCCEEEeCCCCCHHHHHHc-CCC
Confidence 3455554 4446677788888887777766554444 55778888999988865445578888887 763
No 67
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=27.04 E-value=1.8e+02 Score=21.01 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHH----HHHHhCCCCeeec-CChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEAN----HLLLQKQLPAVRW-VGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al----~~l~~~~I~~i~~-v~~~~l~~ls~~tGa~ 281 (315)
....+.+.+-.+.+||.+.+.++... +++.+++|.++.. -++ ++|..++|-.
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk---~eLG~a~G~~ 83 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITS---LELGAVCGKP 83 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCH---HHHHHHTTCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCH---HHHHHHhCCc
Confidence 34556666677899999999987765 4566789987766 455 4567777754
No 68
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.16 E-value=71 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCcEEEecCC-CCHHHHHHHHhCCCCeee
Q psy9923 227 ASMVDKVKATGATLAICQWG-FDDEANHLLLQKQLPAVR 264 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~-I~~~al~~l~~~~I~~i~ 264 (315)
.+.++.+.+.|+..|+.+.+ .++++.+.+.++||.++.
T Consensus 72 ~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 72 LSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVI 110 (122)
T ss_dssp GGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEEC
Confidence 56777777778776555554 467777888888887764
No 69
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=26.12 E-value=46 Score=18.58 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhhhhhcCCChhHHHH
Q psy9923 27 EIAKLMVQLSQSQDDEIGDGTTGVVV 52 (315)
Q Consensus 27 P~a~ll~~~a~~~~~~~GDGttt~vi 52 (315)
|...| .++-....+.+|||+-..=.
T Consensus 2 ~~~~~-~~aledm~eiFGdG~dY~WA 26 (31)
T 3oak_C 2 PFTHM-SDKIDEMYDIFGDGHDYDWA 26 (31)
T ss_dssp HHHHH-HHHHHHHHHHHCCSCTTHHH
T ss_pred cchhH-HHHHHHHHHHhCCCchhhhh
Confidence 44443 56666778889999866533
No 70
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.16 E-value=1.7e+02 Score=25.63 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeeccCCC
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKAT-GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 287 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~-~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~~l~ 287 (315)
|++++++| -..+++++++.+++. |+++++...+- ...+..+.+.|+-++..-...++....+..+..+...++
T Consensus 207 sp~~f~ef---~~p~~k~i~~~i~~~~g~~~i~~~~g~-~~~l~~l~~~g~d~~~~d~~~dl~~~~~~~~~~l~Gn~d 280 (338)
T 2eja_A 207 SLEDYGEY---VYPYVNYLISELKDFSDTPVIYFFRGS-SSFIDLAVDYRADALSVDWSVDIPELFKIYDKGFQGNLE 280 (338)
T ss_dssp CHHHHHHH---THHHHHHHHHHHHHHCCCCEEEEESSH-HHHHHHHTTSCCSEEECCTTSCHHHHHHHCCSEEECCBC
T ss_pred CHHHHHHH---hHHHHHHHHHHHhhcCCCCEEEEcCCc-HHHHHHHHHcCCCEEEeCCCCCHHHHHHhCCeEEEECCC
Confidence 56666544 456677778888776 77777655554 677888999888877543344566665544444554444
No 71
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=24.80 E-value=87 Score=23.15 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=37.9
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-H----HHHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-A----NHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-a----l~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
..++.+.+..+.+|+++.++++. . ..+|.++||..+.--++ .+|.+++|-..
T Consensus 32 ~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk---~~LG~a~G~k~ 88 (113)
T 3jyw_G 32 HVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGK---ARLGTLVNQKT 88 (113)
T ss_dssp HHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCS---TTTHHHHCSSS
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCCC
Confidence 45566667788999999999873 2 35678999998865555 45667777654
No 72
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.42 E-value=1.1e+02 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCcEEEecCCCCH-----HHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDD-----EANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~-----~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
..+..|.+-.+.+||++.++++ ....+|.++||.++.--++ .+|..++|-.
T Consensus 142 eV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk---~eLG~A~Gkk 197 (266)
T 2zkr_f 142 TVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGK---ARLGHLVHRK 197 (266)
T ss_dssp HHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCH---HHHHHHHTSS
T ss_pred HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCC
Confidence 4566677777899999999988 3457889999998776555 4556666643
No 73
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=24.37 E-value=53 Score=28.19 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=36.4
Q ss_pred HHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCe
Q psy9923 230 VDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGR 281 (315)
Q Consensus 230 ~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ 281 (315)
+++|.+.+++|||.....++.....|..-+..++..-. .+.++.+++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~l~~i~p~v~~~~~~~~~~~~i~~lg~~~g~e 144 (303)
T 3tny_A 89 VETIASLKPDLIIGNKMRHEKVYEQLKAIAPTVFSETLRGEWKDNFKFYAKALNKE 144 (303)
T ss_dssp HHHHHHTCCSEEEEEHHHHGGGHHHHHTTSCEEEECCCTTCHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCCCEEEEeccchHHHHHHhhcCCcEEEeccCcccHHHHHHHHHHHhCch
Confidence 36788889999998766666666777777666654322 45677888888753
No 74
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=24.19 E-value=81 Score=23.29 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=36.1
Q ss_pred HHHHHHHHCCCcEEEecCCCCHH-----HHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 228 SMVDKVKATGATLAICQWGFDDE-----ANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~-----al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...+.+.+-.+.+|+.+.+.++. ...++.+++|..+..-++. +|..++|-.
T Consensus 34 ~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~---eLG~a~G~~ 89 (119)
T 1rlg_A 34 ETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKN---DLGRAVGIE 89 (119)
T ss_dssp HHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHH---HHHHHTTCS
T ss_pred HHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCCC
Confidence 44555656678899999999763 3467888899976666654 566677764
No 75
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=24.17 E-value=53 Score=28.36 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG 267 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~ 267 (315)
+++.|....|++++++-..-...+.++-.+.||..+..++
T Consensus 206 EmV~Kaa~aGIpvlvS~SApTslAV~lA~~~giTLiGf~R 245 (268)
T 2pw9_A 206 DMVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYSR 245 (268)
T ss_dssp HHHHHHHHHTCCEEEESSCBCHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEcccccHHHHHHHHHcCCEEEEEec
Confidence 5778888889999999989999999999999998877654
No 76
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=24.00 E-value=1.5e+02 Score=25.67 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCC----hhhHHHHHHHHCCeecc
Q psy9923 220 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVG----GPDIELIAIVTGGRIVP 284 (315)
Q Consensus 220 ~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~----~~~l~~ls~~tGa~ii~ 284 (315)
++|.+++.+.++.+.+.+ +.++=....+.+.....+.|.-.+..++ .+++-.++.-.|+.++-
T Consensus 63 ~eE~~Rv~pvi~~l~~~~--~piSIDT~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~~~~vVl 129 (280)
T 1eye_A 63 AVETSRVIPVVKELAAQG--ITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVL 129 (280)
T ss_dssp ---HHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhhcCC--CEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCeEEE
Confidence 456778899999998764 4455567889999888888998888775 45677788888988775
No 77
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=23.93 E-value=2.2e+02 Score=25.00 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCCh----hhHHHHHHHHCCeecc
Q psy9923 219 RKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG----PDIELIAIVTGGRIVP 284 (315)
Q Consensus 219 ~~~E~~~~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~----~~l~~ls~~tGa~ii~ 284 (315)
.++|.+++.+.++.|.+. .++.|+=....+.+.....+.|.-.+..++- ..+-.++.-.|+.++-
T Consensus 66 ~~eE~~Rv~pvI~~l~~~-~~vpiSIDT~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~v~a~~~~~vvl 134 (314)
T 2vef_A 66 IEEEIQRVVPVIKAIRKE-SDVLISIDTWKSQVAEAALAAGADLVNDITGLMGDEKMPHVVAEARAQVVI 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCCEEEEECSCHHHHHHHHHTTCCEEEETTTTCSCTTHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhh-CCceEEEeCCCHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHcCCCEEE
Confidence 357888899999999864 2455565788899998888889988887753 5788888889987775
No 78
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=23.72 E-value=45 Score=23.29 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCee
Q psy9923 246 GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRI 282 (315)
Q Consensus 246 ~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~i 282 (315)
+.++...+.|.++||.-+..+=..+.+++++.||.+.
T Consensus 11 ~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~ 47 (83)
T 2kz3_A 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSY 47 (83)
T ss_dssp TCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCH
Confidence 6788999999999998776554455556666666543
No 79
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=23.03 E-value=36 Score=26.50 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHH-HH----HHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDE-AN----HLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~-al----~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
...++.+.+-.+.+|+.+.++++. .. .+|.++||..+.--++ ++|..++|-.
T Consensus 56 kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk---~eLG~a~Gk~ 112 (144)
T 2jnb_A 56 NEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSK---QALGRACGVS 112 (144)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCS---HHHHHHHTCS
T ss_pred HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCH---HHHHHHhCCC
Confidence 345666777788999999999995 33 4677789987655555 4667777754
No 80
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=22.34 E-value=31 Score=29.83 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhh
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPD 270 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~ 270 (315)
.+.++.+.+.|..|++....||+.+.+.|.+..=.-+..|.+++
T Consensus 215 sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~ 258 (268)
T 3pry_A 215 SAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEG 258 (268)
T ss_dssp CHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSS
T ss_pred ChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeeccccc
Confidence 47889999999999999999999999999987766666666544
No 81
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=22.20 E-value=1.8e+02 Score=25.46 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCCh-hhHHHHHHHHCCeec
Q psy9923 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGG-PDIELIAIVTGGRIV 283 (315)
Q Consensus 227 ~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~-~~l~~ls~~tGa~ii 283 (315)
.+.++.+.+.++++|.+..+.++.....+.+.++.++..+.. ++.++ +...|+..+
T Consensus 92 ~~~~~~~~~~g~d~V~l~~g~p~~~~~~l~~~g~~v~~~v~s~~~a~~-a~~~GaD~i 148 (326)
T 3bo9_A 92 DDLVKVCIEEKVPVVTFGAGNPTKYIRELKENGTKVIPVVASDSLARM-VERAGADAV 148 (326)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCHHHHHHHHHTTCEEEEEESSHHHHHH-HHHTTCSCE
T ss_pred HHHHHHHHHCCCCEEEECCCCcHHHHHHHHHcCCcEEEEcCCHHHHHH-HHHcCCCEE
Confidence 356677788899999888888888889999999988876643 44444 444576655
No 82
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=22.02 E-value=2.2e+02 Score=20.73 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCC
Q psy9923 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLP 261 (315)
Q Consensus 226 ~~~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~ 261 (315)
+....+.+...|..++++ ++.|.+.+.|...|+.
T Consensus 64 L~~~~~~~~l~G~~~~l~--Gi~p~va~~l~~~G~~ 97 (123)
T 3zxn_A 64 LIEISRLAELLGLPFVLT--GIKPAVAITLTEMGLD 97 (123)
T ss_dssp HHHHHHHHHHHTCCEEEE--CCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCEEEEE--cCCHHHHHHHHHhCCC
Confidence 467888888899999999 7999999999999885
No 83
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=21.39 E-value=94 Score=27.50 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC----CCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCe
Q psy9923 211 SVEDYKELRKYEQEKFASMVDKVKAT----GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281 (315)
Q Consensus 211 s~~~~~~~~~~E~~~~~~~~~~i~~~----~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ 281 (315)
|++++++| -..+++++++.+++. +++++...++. ...+..+.+.|+-++..-...++....+..|..
T Consensus 215 sp~~f~ef---~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~-~~~l~~l~~~g~d~i~~d~~~dl~~~~~~~g~~ 285 (354)
T 3cyv_A 215 TGRDYQQF---SLYYMHKIVDGLLRENDGRRVPVTLFTKGG-GQWLEAMAETGCDALGLDWTTDIADARRRVGNK 285 (354)
T ss_dssp CHHHHHHH---THHHHHHHHHHSCSEETTEECCEEEECTTT-TTTHHHHHTTSCSEEECCTTSCHHHHHHHHTTT
T ss_pred CHHHHHHH---hHHHHHHHHHHHHHhcCCCCCCEEEECCCH-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCC
Confidence 45665444 455677777777765 47777666666 567888889999888754467788888877764
No 84
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=21.07 E-value=1.8e+02 Score=25.36 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHHHHHhCCCCeeecCChhhHHHHHHHHCCeecc
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVP 284 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ls~~tGa~ii~ 284 (315)
+.++.+.+.|+++|.+..+.+......+.+.|+.++..+...+.-+.+...|+..+.
T Consensus 87 ~~~~~~~~~g~d~V~~~~g~p~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~ 143 (328)
T 2gjl_A 87 EYRAAIIEAGIRVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVS 143 (328)
T ss_dssp HHHHHHHHTTCCEEEEEESCCHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCcHHHHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEE
Confidence 466777888999998877777888889999999888766544433445567777664
No 85
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.54 E-value=2.1e+02 Score=20.15 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCcEEEecCCCCHHHHH----HHHhCCCCeeec-CChhhHHHHHHHHCC
Q psy9923 228 SMVDKVKATGATLAICQWGFDDEANH----LLLQKQLPAVRW-VGGPDIELIAIVTGG 280 (315)
Q Consensus 228 ~~~~~i~~~~~~lVi~~~~I~~~al~----~l~~~~I~~i~~-v~~~~l~~ls~~tGa 280 (315)
+..+.+.+-.+.+|+.+.+.++.... ++.+++|.++.. -++.+ |..++|-
T Consensus 22 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~e---LG~a~Gk 76 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVE---LGTLLGK 76 (99)
T ss_dssp HHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCG---GGGTTCS
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHH---HHHHHCC
Confidence 45566777788999999998877654 456788987665 44443 5556664
Done!