RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9923
(315 letters)
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 611 bits (1577), Expect = 0.0
Identities = 233/302 (77%), Positives = 273/302 (90%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++VS DG+VTVTNDGATIL+ MDVDH+IAKL+V+LS+SQDDEIGDGTTGVVVLAGALLEQ
Sbjct: 51 ILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQ 110
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+GIHPIRIADG+E A + AV+HLE IAD +PDN EPLI+TAMT+LGSKI++
Sbjct: 111 AEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVS 170
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+CHRQ AEIAV+AV++VADLE++DVNFELIKVEGKVGG+LEDT LVKG+VIDKDFSHPQM
Sbjct: 171 RCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM 230
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PKE++D K+AILTCPFEPP+PKTKH LD+ SVEDYK+L++YEQ+ F MV++VK GA L
Sbjct: 231 PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
ICQWGFDDEANHLLLQ LPAVRWVGG +IELIAI TGGRIVPRFE+L+ EKLGKAGLV
Sbjct: 291 VICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLV 350
Query: 301 RQ 302
R+
Sbjct: 351 RE 352
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 535 bits (1379), Expect = 0.0
Identities = 222/304 (73%), Positives = 268/304 (88%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M++S DGD+TVTNDGATIL MDVD+ IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLEQ
Sbjct: 55 MLISPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQ 114
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLDKGIHPI+IA+GFE AA+ AV+HLE I+D + +N EPLI+ A T+LGSKI++
Sbjct: 115 AEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVS 174
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
KCHR+ AEIAV+AV+ VAD+E+RDV+F+LIKVEGKVGG LEDT L+KG++IDKDFSHPQM
Sbjct: 175 KCHRRFAEIAVDAVLNVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM 234
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PKE++D K+AILTCPFEPP+PKTKH LD+ SVE+YK+L+KYEQ+KF M+D +K +GA +
Sbjct: 235 PKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFKEMIDDIKKSGANI 294
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
ICQWGFDDEANHLLLQ LPAVRWVGG ++ELIAI TGGRIVPRF+EL+ +KLGKAGLV
Sbjct: 295 VICQWGFDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLV 354
Query: 301 RQTQ 304
R+
Sbjct: 355 REIS 358
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 329 bits (847), Expect = e-111
Identities = 128/304 (42%), Positives = 176/304 (57%), Gaps = 44/304 (14%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD T+TNDGATILK ++V+H AKL+V++++SQDDE+GDGTT VVVLAG LL++
Sbjct: 36 MLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKE 95
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LL GIHP I G+E A + A++ L+ IA P++ ++ E L+K A T+L SK+++
Sbjct: 96 AEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAV--PIDVEDREELLKVATTSLNSKLVS 153
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+ E+ V+AV+ V E DV+ +I+VE K GG LED+ LV G+V DK + P M
Sbjct: 154 GGDDFLGELVVDAVLKVGK-ENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM 212
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PK L + K+ +L C E +
Sbjct: 213 PKRLENAKILLLDCKLEY-----------------------------------------V 231
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
I + G DDEA H L + + AVR V D+E IA TG IV R E+LT E LG AGLV
Sbjct: 232 VIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGTAGLV 291
Query: 301 RQTQ 304
+T+
Sbjct: 292 EETK 295
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 301 bits (772), Expect = 3e-99
Identities = 132/304 (43%), Positives = 196/304 (64%), Gaps = 4/304 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GDVT+TNDGATILK MD++H AK++V+++++QD+E+GDGTT VVLAG LLE+
Sbjct: 43 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEK 102
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+ IHP I +G+ LAA+ A++ L+ IA V+PD+ + L K A T+L K
Sbjct: 103 AEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAI--KVDPDDKDTLRKIAKTSLTGKGAE 160
Query: 121 KCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
++A++ V+AV+ VA+ K V+ + IK+E K GG ++DT L++G+VIDK+ HP
Sbjct: 161 AAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHP 220
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
MPK + + K+A+L P E + + + + S + + + E+ MVDK+ TGA
Sbjct: 221 GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGA 280
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
+ CQ G DD A H L + + AVR V D+E +A TG +IV ++LT E LG+A
Sbjct: 281 NVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGEAE 340
Query: 299 LVRQ 302
LV +
Sbjct: 341 LVEE 344
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 287 bits (736), Expect = 3e-94
Identities = 114/304 (37%), Positives = 181/304 (59%), Gaps = 10/304 (3%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V+ G +T+TNDGATILK +++ H AKL+V+ ++SQD+E+GDGTT VVLAG LLE+
Sbjct: 17 MLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEVGDGTTTAVVLAGELLEE 76
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L++ GIHP I G+ELA + A+K LE ++ D+ E L+ A T+L SKI +
Sbjct: 77 AEKLIEAGIHPTDIIRGYELALEIALKALEELSIPV---SDDDEDLLNVARTSLNSKISS 133
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+ + ++ V+AV+ + + I V GG LED+ L++G+V+DK + P M
Sbjct: 134 RESELLGKLVVDAVLLI----IEKFDVGNIGVIKIEGGSLEDSELIEGIVLDKGYLSPDM 189
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PK L + K+ +L CP E + + + E+ + L + E+++ +++K+ G L
Sbjct: 190 PKRLENPKILLLDCPLEYEKTEKVIIS---TAEELERLLEAEEKQLLPLLEKIVDAGVNL 246
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
I Q G DD A H L + + A+R V D+E +A TG +V ++L ++LG AG V
Sbjct: 247 VIIQKGIDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGSAGKV 306
Query: 301 RQTQ 304
+ +
Sbjct: 307 EERE 310
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 278 bits (713), Expect = 2e-90
Identities = 129/306 (42%), Positives = 192/306 (62%), Gaps = 6/306 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GDVT+TNDGATILK MD++H AK++V+++++QD+E+GDGTT VVLAG LLE+
Sbjct: 44 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEK 103
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LL++ IHP I +G+ AA+ A++ ++ IA ++P++ + L K A T+L SK
Sbjct: 104 AEDLLEQDIHPTVIIEGYRKAAEKALEIIDEIATK--ISPEDRDLLKKVAETSLTSKASA 161
Query: 121 KCHRQ-MAEIAVNAVMAVADLE---KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFS 176
+ + +A + V AV VA+L K V+ + IK+ K GG ++DT LV+G+V+DK+
Sbjct: 162 EVAKDKLANLVVEAVKQVAELRGDGKYYVDLDNIKIVKKTGGSIDDTELVEGIVVDKEVV 221
Query: 177 HPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236
HP MPK + + K+A+L P E + + + + + ++ E+ MVDK+
Sbjct: 222 HPGMPKRVENAKIALLDAPLEVEKTEIDAEIRITDPDQIQKFLDQEEAMLKEMVDKIADA 281
Query: 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK 296
GA + ICQ G DD A H L + + AVR V DIE +A TG RIV +E+T LG
Sbjct: 282 GANVVICQKGIDDVAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGY 341
Query: 297 AGLVRQ 302
AGLV +
Sbjct: 342 AGLVEE 347
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 278 bits (713), Expect = 2e-90
Identities = 114/312 (36%), Positives = 175/312 (56%), Gaps = 15/312 (4%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+T+TNDG TILK ++++H AKL+V++++ QDDE GDGTT VVLAGALL++
Sbjct: 39 MLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKE 98
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L+ GIHP I G+ LA + AV+ L+ IA PV+ E +K A+T++ SK N
Sbjct: 99 AEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIA--KPVSDSEEE--LKIAITSVASKSAN 154
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDK-DFSHPQ 179
++ E+ V AV V K + + I + + GG + +V+G+V DK S
Sbjct: 155 S-DEEIGELVVEAVEKVG---KEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF 210
Query: 180 MP-KELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYE-QEKFASMVDKVKATG 237
MP K L + K+ +L E +P+ + + S + + + E E A++V + G
Sbjct: 211 MPDKRLENPKILLLDKKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGG 270
Query: 238 AT-LAICQWGFDDEANHLLLQKQLPAVRWVGGPDI-ELIAIVTGGRIVPRFEELTSEKLG 295
A + + G DD A L + R V D+ E +A + G +IV ++LT+ LG
Sbjct: 271 ANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLG 330
Query: 296 K--AGLVRQTQT 305
+ AGLV +T+T
Sbjct: 331 EGAAGLVEETKT 342
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 227 bits (581), Expect = 1e-70
Identities = 119/314 (37%), Positives = 180/314 (57%), Gaps = 23/314 (7%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+ + G+V +TNDGATILK M V H AK++V+LS++QD E GDGTT VVVLAGALL
Sbjct: 36 MIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSA 95
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
E LL KGIHP I++ F++AA+ AV+ L+++ S PV+ ++ E LIK+A T+L SK+++
Sbjct: 96 CESLLKKGIHPTVISESFQIAAKKAVEILDSM--SIPVDLNDRESLIKSATTSLNSKVVS 153
Query: 121 KCHRQMAEIAVNAVMAVADLEK-RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH-P 178
+ +A IAV+AV+ V D +V+ + I++ K+GG +EDT LV G+V + S
Sbjct: 154 QYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKA 213
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDY-------KELRKYEQEKFASMVD 231
P + K+ ++ PP+ +N+ V DY +E RKY +M
Sbjct: 214 GGPTRIEKAKIGLIQFCLSPPKTDMDNNI---VVNDYAQMDRILREERKY----ILNMCK 266
Query: 232 KVKATGATLAICQW-----GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF 286
K+K +G + + Q D A H L + ++ V+ + +IE I G + V
Sbjct: 267 KIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASI 326
Query: 287 EELTSEKLGKAGLV 300
+ T +KLG A LV
Sbjct: 327 DHFTEDKLGSADLV 340
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 211 bits (538), Expect = 2e-64
Identities = 112/312 (35%), Positives = 180/312 (57%), Gaps = 9/312 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+ G+V +TNDGATILK M V H AK++V+LS++QD E GDGTT VV+LAGALL
Sbjct: 37 MIQDGKGEVIITNDGATILKQMAVLHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGA 96
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
E LL+KGIHP I++ F+ AA A+K L+ + S PV+ + E L+K+A T+L SK+++
Sbjct: 97 CERLLNKGIHPTIISESFQSAADEAIKILDEM--SIPVDLSDREQLLKSATTSLSSKVVS 154
Query: 121 KCHRQMAEIAVNAVMAVADLEK-RDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQ 179
+ +A +AV+AV+ V D E ++V+ IKV K+GG ++DT L++G+V + S
Sbjct: 155 QYSSLLAPLAVDAVLKVIDPENAKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASKSA 214
Query: 180 -MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
P + K+ ++ PP+ ++ + V + K E+ ++V K+K TG
Sbjct: 215 GGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRVLKEERAYILNIVKKIKKTGC 274
Query: 239 TLAICQW-----GFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEK 293
+ + Q +D A H L + ++ V+ + +IE I G + + + T++K
Sbjct: 275 NVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADK 334
Query: 294 LGKAGLVRQTQT 305
LG A LV + +
Sbjct: 335 LGSAELVEEVDS 346
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 195 bits (497), Expect = 2e-58
Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 9/305 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M++ G + +TNDG IL+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L
Sbjct: 44 MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSV 103
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L++ IHP I ++ A A+ LE I S PV+ ++ ++K + +G+K ++
Sbjct: 104 AEPFLEQNIHPTIIIRAYKKALDDALSVLEEI--SIPVDVNDDAAMLKLIQSCIGTKFVS 161
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFEL-----IKVEGKVGGKLEDTMLVKGVVIDKDF 175
+ M ++A++AV V + + E+ KVE GG +ED+ ++KGV+I+KD
Sbjct: 162 RWSDLMCDLALDAVRTVK-RDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDV 220
Query: 176 SHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235
+HP+M + + + ++ +L CP E + +++ N+++ ED+ + + E+E M + + A
Sbjct: 221 THPKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIA 280
Query: 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG 295
L I + G D A H LL+ + A+R V D IA G IV R EEL +G
Sbjct: 281 VKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVG 340
Query: 296 -KAGL 299
GL
Sbjct: 341 TGCGL 345
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 189 bits (483), Expect = 1e-56
Identities = 101/316 (31%), Positives = 162/316 (51%), Gaps = 55/316 (17%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M++ G + +TNDG IL+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L
Sbjct: 44 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAV 103
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L++GIHP I + A + A+K LE I S PV+ ++ ++K + +G+K ++
Sbjct: 104 AEPFLERGIHPTVIIKAYRKALEDALKILEEI--SIPVDVNDRAQMLKIIKSCIGTKFVS 161
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFEL-----IKVEGKVGGKLEDTMLVKGVVIDKDF 175
+ M +A++AV VA +E+ E+ KVE GG++ED+ ++ GV+++KD
Sbjct: 162 RWSDLMCNLALDAVKTVA-VEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDV 220
Query: 176 SHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235
+HP+M + + + ++ +L CP E Y
Sbjct: 221 THPKMRRRIENPRIVLLDCPLE-----------------Y-------------------- 243
Query: 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG 295
L I + G D A H L++ + A+R V D IA G IV R EELT +G
Sbjct: 244 ----LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVG 299
Query: 296 KAGLVRQTQTMFKFKK 311
+F+ KK
Sbjct: 300 TGAG------LFEVKK 309
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 185 bits (473), Expect = 6e-55
Identities = 107/316 (33%), Positives = 164/316 (51%), Gaps = 15/316 (4%)
Query: 3 VSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE 62
V G VTVTNDGATILK + VD+ AK++V +S+ QDDE+GDGTT V VLA LL +AE
Sbjct: 45 VGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAE 104
Query: 63 HLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINK 121
L+ + IHP I +G+ +A A + L + A + + E L+ A TTL SKI+ +
Sbjct: 105 KLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQ 164
Query: 122 CHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMP 181
AE+AV+AV+ + K N + I++ K+GG L+D+ L +G ++DK Q P
Sbjct: 165 DKEHFAELAVDAVLRL----KGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQ-P 219
Query: 182 KELRDVKLAILTCPFEPPRPK---TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
K + + K+ I P + + K K +D S E+ + E+EK + V+K+ G
Sbjct: 220 KRIENAKILIANTPMDTDKIKIFGAKVRVD--STAKVAEIEEAEKEKMKNKVEKILKHGI 277
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
I + + L + A+ +E +A+VTGG I F+ KLG
Sbjct: 278 NCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCK 337
Query: 299 LVRQT----QTMFKFK 310
L+ + + +F
Sbjct: 338 LIEEIMIGEDKLIRFS 353
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 185 bits (471), Expect = 2e-54
Identities = 113/322 (35%), Positives = 169/322 (52%), Gaps = 32/322 (9%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V GDVT+TNDGATILKL++V+H AK++V+L+Q QD E+GDGTT VV++A LL++
Sbjct: 36 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKR 95
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKI 118
A L+ + IHP I G+ LA + AVK+ I + ++ DNL E LI A T++ SKI
Sbjct: 96 ANELVKQKIHPTTIISGYRLACKEAVKY---IKEHLSISVDNLGKESLINVAKTSMSSKI 152
Query: 119 INKCHRQMAEIAVNAVMAVADLEKR--------DVNFELIKVEGKVGGKLEDTMLVKGVV 170
I A + V+A++AV ++ VN ++K GK +++ LV G
Sbjct: 153 IGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVN--ILKAHGK---SAKESYLVNGYA 207
Query: 171 IDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQ-SVEDYKEL---RKYEQEKF 226
++ + MP +++ K+A L + KTK L VQ V D ++L R+ E +
Sbjct: 208 LNCTRASQGMPTRVKNAKIACLDFNLQ----KTKMKLGVQVVVTDPEKLEKIRQRESDIT 263
Query: 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF 286
+ K+ A GA + + G DD ++ AVR V D+ IA TG +V
Sbjct: 264 KERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLVSTL 323
Query: 287 ------EELTSEKLGKAGLVRQ 302
E LG+A V Q
Sbjct: 324 ANLEGEETFDPSYLGEAEEVVQ 345
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 184 bits (469), Expect = 3e-54
Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 7/308 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++V S+G TV+NDGATILKL+D+ H AK +V +++SQD E+GDGTT VV+LAG LL++
Sbjct: 46 LIVGSNGKATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKE 105
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFP-VNPDNLEPLIKTAMTTLGSKII 119
A+ +++G+HP I G+ A A++ ++ IA + + E L K A T L SK+I
Sbjct: 106 AKPFIEEGVHPQLIIRGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLI 165
Query: 120 NKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFS--- 176
+++ V+AV++ L++ D++ +LI V+ GG LED++LV GV K FS
Sbjct: 166 AHNKEFFSKMIVDAVLS---LDRDDLDLKLIGVKKVQGGALEDSVLVNGVAFKKTFSYAG 222
Query: 177 HPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236
Q PK+ + K+ +L E K + V+ VEDY+ + E + K+ +
Sbjct: 223 FEQQPKKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFEKLRKIVES 282
Query: 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK 296
GA + + + D A + V D++ + GG I +L ++ LG
Sbjct: 283 GANIVLSKLPIGDLATQYFADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGT 342
Query: 297 AGLVRQTQ 304
L + Q
Sbjct: 343 CALFEERQ 350
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 181 bits (461), Expect = 4e-53
Identities = 102/309 (33%), Positives = 166/309 (53%), Gaps = 9/309 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++V G VT++NDGATILKL+D+ H AK +V +++SQD E+GDGTT VVVLAG L++
Sbjct: 44 LIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKE 103
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFP--VNPDNLEPLIKTAMTTLGSKI 118
A+ ++ G+HP I G+ A Q A++ ++ IA + + E L K A T L SK+
Sbjct: 104 AKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163
Query: 119 INKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFS-- 176
I A++ V+AV+++ D D++ ++I ++ GG LED+ LV GV K FS
Sbjct: 164 IASEKEFFAKMVVDAVLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYA 219
Query: 177 -HPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235
Q PK+ ++ K+ +L E K + V+ E+Y+ + E + ++K+
Sbjct: 220 GFEQQPKKFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVK 279
Query: 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG 295
+GA + + + D A + + V D++ +A TGG I +T + LG
Sbjct: 280 SGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLG 339
Query: 296 KAGLVRQTQ 304
GL + Q
Sbjct: 340 TCGLFEERQ 348
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 180 bits (458), Expect = 1e-52
Identities = 109/319 (34%), Positives = 164/319 (51%), Gaps = 22/319 (6%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V GDVT+TNDGATILKL++V+H AK++V+L+Q QD E+GDGTT VV++A LL++
Sbjct: 40 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKR 99
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKI 118
A L+ +HP I G+ LA + AVK+ I ++ V+ D L E LI A T++ SKI
Sbjct: 100 ANELVKNKVHPTSIISGYRLALKEAVKY---IKENLSVSVDTLGKEALINVAKTSMSSKI 156
Query: 119 INKCHRQMAEIAVNAVMAVADLEKRDVN---FELIKVEGKVGGKLEDTMLVKGVVIDKDF 175
I + I V+AV+AV + + + + G ++ LVKG ++
Sbjct: 157 IGLDSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKSARESYLVKGYALNCTR 216
Query: 176 SHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQ-SVEDYKEL---RKYEQEKFASMVD 231
+ QMPK ++ K+A L + K K L VQ V+D +L R+ E + +
Sbjct: 217 ASQQMPKRIKKAKIACLDFNLQ----KAKMALGVQIVVDDPAKLEQIRQREADITKERIK 272
Query: 232 KVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF----- 286
K+ GA + + G DD ++ VR D++ IA TGG +V
Sbjct: 273 KILDAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEG 332
Query: 287 -EELTSEKLGKAGLVRQTQ 304
E + LG A V Q +
Sbjct: 333 EETFDASYLGFADEVVQER 351
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 178 bits (454), Expect = 5e-52
Identities = 108/299 (36%), Positives = 162/299 (54%), Gaps = 11/299 (3%)
Query: 6 DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
G+VTVTNDGATILK + +D+ AK++V +S++QD+E+GDGTT VVVLAG LL +AE LL
Sbjct: 60 SGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLL 119
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKCHR 124
D+ IHP I +G+ +A A K LE IA + + E L+ A TTL SK++
Sbjct: 120 DQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKD 179
Query: 125 QMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKEL 184
A++AV+AV+ + K N + I++ K GG L D+ L G +++K Q PK L
Sbjct: 180 HFAKLAVDAVLRL----KGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQ-PKRL 234
Query: 185 RDVKLAILTCPFEPPRPK---TKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLA 241
+ K+ + P + + K K +D S+E E+ E+EK + VDK+ A G +
Sbjct: 235 ENCKILVANTPMDTDKIKIYGAKVKVD--SMEKVAEIEAAEKEKMKNKVDKILAHGCNVF 292
Query: 242 ICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
I + + L + + A+ +E +A G IV F+ KLG L+
Sbjct: 293 INRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLI 351
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 163 bits (415), Expect = 2e-49
Identities = 67/201 (33%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 104 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT 163
E L++ A T+L SK+ + + ++ V+AV+ V R + +IKVE GG LED+
Sbjct: 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN-RMDDLGVIKVEKIPGGSLEDS 59
Query: 164 MLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQ 223
LV GVV DK ++ P MPK L + K+ +L CP E
Sbjct: 60 ELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------------------------- 94
Query: 224 EKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIV 283
+ I + G DD A H L + + AVR V D+E IA TG IV
Sbjct: 95 ----------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIV 138
Query: 284 PRFEELTSEKLGKAGLVRQTQ 304
E+LT E LG A LV +T+
Sbjct: 139 SSLEDLTPEDLGTAELVEETK 159
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 162 bits (411), Expect = 5e-46
Identities = 105/312 (33%), Positives = 160/312 (51%), Gaps = 11/312 (3%)
Query: 4 SSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEH 63
+S + VTNDGATILK + +D+ AK++V +S+ QDDE+GDGTT V VLA LL +AE
Sbjct: 46 ASSNTIMVTNDGATILKSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEK 105
Query: 64 LLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKIINKC 122
L+++ IHP I +G+ LA + A+ L A + E LI A TTL SKI+++
Sbjct: 106 LINQKIHPQTIIEGYRLATKAALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQH 165
Query: 123 HRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPK 182
A++AV+AV+ + K N E I++ +GGKL D+ L +G ++ K Q PK
Sbjct: 166 KDHFAQLAVDAVLRL----KGSTNLEAIQIIKILGGKLSDSFLDEGFILAKKIGVNQ-PK 220
Query: 183 ELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLA 241
+ + K+ I + + K + V S EL K E+EK V+K+ G
Sbjct: 221 RIENAKILIANTTMDTDKVKIFGSRVRVDSTAKLAELEKAEREKMKEKVEKILKHGINCF 280
Query: 242 ICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVR 301
I + + L + ++ +E +A+VTGG IV F+ KLG L+
Sbjct: 281 INRQLIYNYPEQLFADAGIMSIEHADFEGVERLALVTGGEIVSTFDHPELVKLGSCDLIE 340
Query: 302 QT----QTMFKF 309
+ + KF
Sbjct: 341 EIMIGEDKLLKF 352
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 153 bits (389), Expect = 1e-42
Identities = 98/315 (31%), Positives = 166/315 (52%), Gaps = 16/315 (5%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+VS GD+ +T DG +L M + H A ++ + + +QD+ GDGTT V+L G LL+Q
Sbjct: 44 MLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQ 103
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE + +G+HP I +GFE+A + ++ L+ D E L+ A T+L +K+
Sbjct: 104 AERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVDR-EFLLNVARTSLRTKLPI 162
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
Q+ EI V+AV+A+ + D++ ++++ DT L++G+V+D HP M
Sbjct: 163 DLADQLTEIVVDAVLAIKKDGE-DIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM 221
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDV--QSVEDYKEL----RKYEQEKFASMVD-KV 233
P+ +++ ILTC KT+ N S E ++L RK+ ++ +++ K
Sbjct: 222 PRRVKNA--YILTCNVSLEYEKTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKK 279
Query: 234 KATGAT-----LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEE 288
K G + + I Q G D + LL ++ + A+R ++E + + GG + E+
Sbjct: 280 KVCGKSPDKGFVVINQKGIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVED 339
Query: 289 LTSEKLGKAGLVRQT 303
LT E LG AGLV +T
Sbjct: 340 LTPECLGWAGLVYET 354
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 151 bits (383), Expect = 5e-42
Identities = 100/306 (32%), Positives = 156/306 (50%), Gaps = 37/306 (12%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+VS GD+ +T DG +L M + H A ++ + + +QDD GDGTT V+L G LL+Q
Sbjct: 40 MLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQ 99
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE + +G+HP I +GFELA A+K LE+ ++ D E L+ A T+L +K+
Sbjct: 100 AERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDR-ELLLSVARTSLRTKLHA 158
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVE-GKVGGKLE-DTMLVKGVVIDKDFSHP 178
Q+ EI V+AV+A+ K D +L VE ++ K + DT L++G+V+D HP
Sbjct: 159 DLADQLTEIVVDAVLAI---YKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHP 215
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQ-EKFASMVDKVKATG 237
MPK + + ILTC S+E YE+ E + V
Sbjct: 216 DMPKRVENA--YILTCNV--------------SLE-------YEKTEVNSGFFYSV---- 248
Query: 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 297
I Q G D + +L ++ + A+R ++E + + GG + ++L+ E LG A
Sbjct: 249 ---VINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSPECLGYA 305
Query: 298 GLVRQT 303
GLV +
Sbjct: 306 GLVYER 311
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 140 bits (354), Expect = 5e-38
Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 43/298 (14%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+++ + VT+D ATIL+ ++V H AKL+V SQ Q++EIGDGT VVVLAG LLE+
Sbjct: 36 MVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEK 95
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII- 119
AE LL G+HP I +G+E A + A++ LE + + N E + K T + SK
Sbjct: 96 AEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG 155
Query: 120 NKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQ 179
N+ ++ + A ++V + N + I+V +GG LED+ +V+G+V ++
Sbjct: 156 NEDF--LSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKRE-PEGS 212
Query: 180 MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239
+ K ++ K+A+ +CPF+ G
Sbjct: 213 V-KRVKKAKVAVFSCPFD--------------------------------------IGVN 233
Query: 240 LAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 297
+ + D A H + + ++ ++ + G +PR T E++G
Sbjct: 234 VIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIGYC 291
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 137 bits (348), Expect = 6e-37
Identities = 86/317 (27%), Positives = 159/317 (50%), Gaps = 9/317 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+++ + VTND ATIL+ ++V H AKL+V S+ Q++EIGDGT V+VLAG LL +
Sbjct: 46 MVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNK 105
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L+ G+HP I G+E+A + A++ LE + + + + LIK ++ SK
Sbjct: 106 AEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYG 165
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
++++ A V ++ N + I+V +GG L ++ ++KG+V +++
Sbjct: 166 N-EDFLSQLVAKACSTVLPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNREAE--GS 222
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
K ++ K+A+ +CP + +TK + + + E+ K E+ + +M+ + +G +
Sbjct: 223 VKRVKKAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNV 282
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
+ D A H L + + ++ ++ + G +PR T E+LG V
Sbjct: 283 IVTGGSVGDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSV 342
Query: 301 R------QTQTMFKFKK 311
T+FK +
Sbjct: 343 YVSEIGGDKVTVFKQEN 359
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 55.3 bits (134), Expect = 8e-09
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 20/203 (9%)
Query: 116 SKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDF 175
I+ + A V A D++ R + +K++ GG D+ +V GVV K+
Sbjct: 20 LDILLPLVWKAASNVKPDVRAGDDMDIR----QYVKIKKIPGGSPSDSEVVDGVVFTKNV 75
Query: 176 SHPQMPKELRDVKLAILTCPFEPPRPKTKH---NLDVQSVEDYKELRKYEQEKFASMVDK 232
+H +MP ++++ ++ +L P E R + K + + ++Y L+ V +
Sbjct: 76 AHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEY--LKNL--------VSR 125
Query: 233 VKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEEL-TS 291
+ A + + + A LLL+ + V V +E I+ TG I+ ++L TS
Sbjct: 126 IVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTS 185
Query: 292 EKLGKAGL--VRQTQTMFKFKKN 312
KLG VR K
Sbjct: 186 PKLGTCESFRVRTYVEEHGRSKT 208
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 54.4 bits (132), Expect = 3e-08
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 10 TVTNDGATILK---LMD-VDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
+T DG T+ K L D ++ A+L+ +++ +D GDGTT VLA A++++ +
Sbjct: 45 KITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAV 104
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIA 93
G +P+ + G E A + V+ L+ ++
Sbjct: 105 AAGANPMDLKRGIEKAVEAVVEELKKLS 132
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 51.3 bits (124), Expect = 3e-07
Identities = 79/330 (23%), Positives = 138/330 (41%), Gaps = 85/330 (25%)
Query: 10 TVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
T+T DG +I K ++++ A+L+ +++ +D GDGTT VLA AL+++ +
Sbjct: 47 TITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNV 106
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQ 125
G +P+ + G + A + V+ L+ +A PV+ GS+ I Q
Sbjct: 107 AAGANPMDLKRGIDKAVEAVVEELKALAR--PVS---------------GSEEI----AQ 145
Query: 126 MAEIAVNAVMAVADL-----EKRDVNFE-LIKVEGKVGGKLEDTM-LVKGVVIDKDFSHP 178
+A I+ N + +L EK V + +I VE LE + + +G+ D+ + P
Sbjct: 146 VATISANGDEEIGELIAEAMEK--VGKDGVITVEE--SKTLETELEVTEGMQFDRGYLSP 201
Query: 179 -------QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVD 231
+M L D + + + + S++D +++
Sbjct: 202 YFVTDPERMEAVLEDPLILL-------------TDKKISSLQD-----------LLPLLE 237
Query: 232 KVKATGATLAICQWGFDDEANHLL----LQKQLPAVRWVGGPD--------IELIAIVTG 279
KV +G L I + EA L L+ L V P +E IAI+TG
Sbjct: 238 KVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAA-VKAPGFGDRRKAMLEDIAILTG 296
Query: 280 GRIVPR-----FEELTSEKLGKAGLVRQTQ 304
G ++ EE+T + LG+A V T+
Sbjct: 297 GTVISEDLGLKLEEVTLDDLGRAKRVTITK 326
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 51.5 bits (124), Expect = 3e-07
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 28/182 (15%)
Query: 4 SSDGDVTVTNDGATILK---LMDVDHEI-AKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 59
G +T DG T+ K D + A+L+ Q++ +D+ GDGTT +LA A+
Sbjct: 53 QEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFR 112
Query: 60 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAM-TTLGSKI 118
+ + G++P+ + G +LA + ++ L+ S PV ++ A + G
Sbjct: 113 EGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQ--SRPVKTKED--ILNVATISANGDVE 168
Query: 119 INKCHRQ-MAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDT-MLVKGVVIDKDFS 176
I M ++ + + V D G LED +V+G+ D+ +
Sbjct: 169 IGSLIADAMDKVGKDGTITVED-----------------GKTLEDELEVVEGMSFDRGYI 211
Query: 177 HP 178
P
Sbjct: 212 SP 213
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 50.9 bits (122), Expect = 4e-07
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 7 GDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE 62
G T+TNDG TI K ++++ + A+++ +++ +D GDGTT VLA A++ +
Sbjct: 45 GAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGA 104
Query: 63 HLLDKGIHPIRIADGFELAAQCAVKHLETIA 93
+ G +P+ + G + A V+ L+ A
Sbjct: 105 KAVAAGANPMDLKRGIDRAVAAVVEELKANA 135
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 50.3 bits (120), Expect = 6e-07
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 16/130 (12%)
Query: 4 SSDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 59
S G + NDG T+ K ++++ + AKL+ Q + +D GDGTT VVLA L+
Sbjct: 97 SKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIA 156
Query: 60 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETI---------ADSFPV---NPDNLEPLI 107
+ ++ G +P++I G E A+ VK L+ + AD V N + +I
Sbjct: 157 EGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMI 216
Query: 108 KTAMTTLGSK 117
AM+ +G K
Sbjct: 217 AEAMSKVGRK 226
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 50.1 bits (120), Expect = 8e-07
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 7 GDVTVTNDGATILKLMDVDHEIAKLMVQL----SQSQDDEIGDGTTGVVVLAGALLEQAE 62
G +T DG T+ K ++++ + + Q+ + +D GDGTT VLA A++ +
Sbjct: 45 GAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGA 104
Query: 63 HLLDKGIHPIRIADGFELAAQCAVKHLETIA 93
L+ G++P+ + G +LA V L+ IA
Sbjct: 105 KLVAAGMNPMDLKRGIDLAVAAVVDELKKIA 135
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 45.7 bits (109), Expect = 2e-05
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 7 GDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE 62
G T+T DG T+ K ++++ + A+L+ +++ +D GDGTT VLA A++++
Sbjct: 43 GAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGL 102
Query: 63 HLLDKGIHPIRIADGFELAAQCAVKHLETIA 93
+ G +PI + G E A + V+ L+ ++
Sbjct: 103 KNVAAGANPIELKRGIEKAVEAVVEELKKLS 133
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 45.1 bits (108), Expect = 3e-05
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 16/94 (17%)
Query: 10 TVTNDGATILKLMDVDHEI----------AKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 59
T+T DG T+ K EI A+L+ +++ +D GDGTT VLA A++
Sbjct: 47 TITKDGVTVAK------EIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVR 100
Query: 60 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 93
+ + G +P+ + G + A + AV+ L+ I+
Sbjct: 101 EGLKNVAAGANPMDLKRGIDKAVEAAVEELKKIS 134
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 42.7 bits (100), Expect = 2e-04
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 5 SDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
S G +T DG T+ K ++++ + A+++ +++ D GDGTT VLA A++ +
Sbjct: 43 SFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVRE 102
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHL 89
+ G++P+ + G +LA + V L
Sbjct: 103 GAKSVAAGMNPMDLKRGIDLAVEAVVADL 131
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 42.4 bits (100), Expect = 2e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 11 VTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLD 66
+ NDG TI K ++++ I L+ Q + +D GDGTT VLA A+++Q +
Sbjct: 48 IVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVA 107
Query: 67 KGIHPIRIADGFELAAQ 83
G +PI + G E A Q
Sbjct: 108 AGANPISLKRGIEKATQ 124
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 42.5 bits (100), Expect = 2e-04
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 5 SDGDVTVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
S G +T DG T+ K ++++ + A+++ +++ +D GDGTT VLA A++ +
Sbjct: 43 SFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVRE 102
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIA 93
+ G++P+ + G ++A VK +E A
Sbjct: 103 GAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRA 135
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 31.8 bits (72), Expect = 0.51
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 223 QEKFASMVDKVKATGATL--AICQWGFDDEA 251
E++ M D + ATG ++ ++C+WG DD A
Sbjct: 193 IERYPPMRDALNATGRSIFYSLCEWGVDDPA 223
>gnl|CDD|223580 COG0506, PutA, Proline dehydrogenase [Amino acid transport and
metabolism].
Length = 391
Score = 31.6 bits (72), Expect = 0.52
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 43 IGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFEL---------AAQCAVKHLETIA 93
G GV AL+ AE LL G + R E A + A +
Sbjct: 38 SVAGEEGV-----ALICLAEALLRIGDNATRDVLIEEFISGGDWASEAGESAKLLVNAAT 92
Query: 94 DSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVA 138
+ + P + ++ LG K+ + A++ +
Sbjct: 93 SGLVLTGKLVNPHLSLKLSQLGQKLG----EPVIRKALDNARRIL 133
>gnl|CDD|183464 PRK12352, PRK12352, putative carbamate kinase; Reviewed.
Length = 316
Score = 29.8 bits (67), Expect = 1.7
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 162 DTMLVKGV--VIDKDFSHPQMPKELRDVKLAILT------CPFEPPRPKTKHNLDVQSVE 213
D + V VIDKD S + +E+ L I T F P + LD +
Sbjct: 203 DAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKP---QQQALDRVDIA 259
Query: 214 DYKELRKYEQE-KFA--SMVDKVKAT 236
+ +Y QE F SM+ K+ A+
Sbjct: 260 ---TMTRYMQEGHFPPGSMLPKIIAS 282
>gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the
ATP-phosphorylation of carbamate and carbamoyl phosphate
(CP) utilization with the production of ATP from ADP and
CP. Both CK (this CD) and nonhomologous CP synthetase
synthesize carbamoyl phosphate, an essential precursor
of arginine and pyrimidine bases, in the presence of
ATP, bicarbonate, and ammonia. CK is a homodimer of 33
kDa subunits and is a member of the Amino Acid Kinase
Superfamily (AAK).
Length = 308
Score = 29.8 bits (68), Expect = 1.8
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 33/88 (37%)
Query: 167 KGV--VIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSV-EDYK------- 216
KGV VIDKD + + +E+ L ILT DV +V ++
Sbjct: 202 KGVEAVIDKDLASALLAEEINADLLVILT--------------DVDNVYINFGKPNQKAL 247
Query: 217 ------ELRKYEQE-KFA--SMVDKVKA 235
EL KY +E +FA SM KV+A
Sbjct: 248 EQVTVEELEKYIEEGQFAPGSMGPKVEA 275
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 29.2 bits (66), Expect = 3.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 56 ALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETI-------ADSFPVNPDNLEPLIK 108
A L E L + ++P + D E++A AV +E P N D L L+K
Sbjct: 494 ATLVSEEDLREGKLYP-PLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVK 552
Query: 109 TAM 111
M
Sbjct: 553 DRM 555
>gnl|CDD|183504 PRK12404, PRK12404, stage V sporulation protein AD; Provisional.
Length = 334
Score = 28.8 bits (65), Expect = 4.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 114 LGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNF 147
LG K R++ E A + + A L K D+ F
Sbjct: 45 LGQDSYEKAERKLLEEACSRAIEKAKLRKEDIQF 78
>gnl|CDD|237071 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
Length = 314
Score = 28.6 bits (65), Expect = 4.2
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 167 KGV--VIDKDFSHPQMPKELRDVKLAILT------CPFEPPRPKTKHNLDVQSVEDYKEL 218
KGV VIDKDF+ ++ + + L ILT F P K LD +V E
Sbjct: 206 KGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGKPNQK---KLDEVTVS---EA 259
Query: 219 RKY-EQEKFA--SMVDKVKA 235
KY E+ +FA SM+ KV+A
Sbjct: 260 EKYIEEGQFAPGSMLPKVEA 279
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 28.5 bits (64), Expect = 5.4
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 226 FASMVDKV----KATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281
F D+V +A+GA IC F + A AVR PD+ + + G R
Sbjct: 89 FRQTPDEVAYLAEASGARAMICHADFPEHA---------AAVR-AASPDLTHVVAIGGAR 138
Query: 282 IVPRFEELTSEKLGKA 297
+E L + LG
Sbjct: 139 AGLDYEALVARHLGAR 154
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 28.3 bits (64), Expect = 6.6
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 14/64 (21%)
Query: 245 WGFDDEANHLLLQKQLPAVR---------WVGGPDIELIAIVTGGRIVPRFEELTSEKLG 295
F DE N + L VR +GG ++ T +I R SE LG
Sbjct: 7 TDFADEENRAAFRAALARVREELGREYPLVIGGKEVR-----TEEKIESRNPADPSEVLG 61
Query: 296 KAGL 299
Sbjct: 62 TVQK 65
>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed.
Length = 313
Score = 28.0 bits (63), Expect = 6.8
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 161 EDTMLVKGV--VIDKDFSHPQMPKELRDVKLAILT------CPFEPPRPKTKHNLDVQSV 212
E+ +KGV VIDKD + + +EL ILT + P K LD +V
Sbjct: 200 EEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKP---LDKVTV 256
Query: 213 EDYKELRKYEQEKFA--SMVDKVKAT 236
E+ K+ YE+ F SM K+ A
Sbjct: 257 EEAKKY--YEEGHFKAGSMGPKILAA 280
>gnl|CDD|226668 COG4213, XylF, ABC-type xylose transport system, periplasmic
component [Carbohydrate transport and metabolism].
Length = 341
Score = 28.1 bits (63), Expect = 6.9
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 119 INKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKD 174
+ K R++A+ A +A+ +K + G K + L+ + + KD
Sbjct: 269 VYKDTRELAKEAAEIAVALVKGKKPEPKAT--TTYNN-GVKDVPSYLLTPIAVTKD 321
>gnl|CDD|189020 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap Endonuclease-1
(FEN1)-like and Exonuclease-1 (EXO1)-like nucleases,
structure-specific, divalent-metal-ion dependent, 5'
nucleases. PIN (PilT N terminus) domain of Flap
Endonuclease-1 (FEN1) and Exonuclease-1 (EXO1)-like
nucleases: FEN1, EXO1, Mkt1, Gap endonuclease 1 (GEN1)
and Xeroderma pigmentosum complementation group G (XPG)
nuclease are members of the structure-specific, 5'
nuclease family that catalyzes hydrolysis of DNA
duplex-containing nucleic acid structures during DNA
replication, repair, and recombination. These nucleases
contain a PIN domain with a helical arch/clamp region
(I domain) of variable length (approximately 30 to 800
residues) and a H3TH (helix-3-turn-helix) domain, an
atypical helix-hairpin-helix-2-like region. Both the
H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Most
nucleases within this family also have a carboxylate
rich active site that is involved in binding essential
divalent metal ion cofactors (Mg2+/Mn2+). Some
nucleases in this family have C-terminal extensions
that act as interaction sites for other proteins.
Length = 209
Score = 27.5 bits (61), Expect = 8.3
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 22 MDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADG 77
+DV+H + + + + D IG+ T+ + + L + GI PI + DG
Sbjct: 25 IDVNHYLYQFLTSKREQYLDAIGEFTSSL----KGYFYRTIKLFENGITPIFVFDG 76
>gnl|CDD|219413 pfam07451, SpoVAD, Stage V sporulation protein AD (SpoVAD). This
family contains the bacterial stage V sporulation
protein AD (SpoVAD), which is approximately 340 residues
long. This is one of six proteins encoded by the spoVA
operon, which is transcribed exclusively in the
forespore at about the time of dipicolinic acid (DPA)
synthesis in the mother cell. The functions of the
proteins encoded by the spoVA operon are unknown, but it
has been suggested they are involved in DPA transport
during sporulation.
Length = 329
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 113 TLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNF 147
G K +M E AV + A L+K D+++
Sbjct: 41 LFGEDSWEKAESKMLEEAVKLALKKAGLKKDDIDY 75
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members catalyze
various methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The function of this subfamily
is not known.
Length = 255
Score = 27.3 bits (61), Expect = 9.9
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 198 PPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWG 246
+P + E ++E +K ++E+F ++ + A G +A+ G
Sbjct: 61 GGKPWENLEAEKSPREAFEEEKKRQREEFVKVIREALAQGKNVALLDGG 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,180,728
Number of extensions: 1602311
Number of successful extensions: 1774
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1698
Number of HSP's successfully gapped: 68
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)