RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9923
(315 letters)
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 455 bits (1172), Expect = e-160
Identities = 231/304 (75%), Positives = 271/304 (89%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
MMV DGDVTVTNDGATIL +MDVDH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+
Sbjct: 38 MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 97
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+GIHPIRIADG+E AA+ A++HL+ I+DS V+ N EPLI+TA TTLGSK++N
Sbjct: 98 AEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVN 157
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
CHRQMAEIAVNAV+ VAD+++RDV+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQM
Sbjct: 158 SCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM 217
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PK++ D K+AILTCPFEPP+PKTKH LDV SVED+K L+KYE+EKF M+ ++K TGA L
Sbjct: 218 PKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANL 277
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
A+CQWGFDDEANHLLLQ LPAVRWVGGP+IELIAI TGGRIVPRF ELT+EKLG AGLV
Sbjct: 278 AVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLV 337
Query: 301 RQTQ 304
++
Sbjct: 338 KEIS 341
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 445 bits (1148), Expect = e-155
Identities = 184/312 (58%), Positives = 244/312 (78%), Gaps = 8/312 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
+++S DG++T+TNDGATIL M++D+EIAKL+VQLS+SQDDEIGDGTTGVVVLA ALL+Q
Sbjct: 73 ILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQ 132
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKI 118
A L+ KGIHPI+IA+GF+ AA+ A+ LE D + D L + L++ A T+LGSKI
Sbjct: 133 ALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKI 192
Query: 119 INKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
++K H + AE+AV AV+ V D +++DV+F+LIK++G+VGG + D+ L+ GV++DKDFSHP
Sbjct: 193 VSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHP 252
Query: 179 QMPKELR------DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDK 232
QMPK + VKLAILTCPFEPP+PKTKH LD+ SVE+Y++L+ YEQ+KF M+D
Sbjct: 253 QMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDD 312
Query: 233 VKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSE 292
VK GA + ICQWGFDDEANHLLLQ LPAVRWVGG ++E IAI T GRIVPRF++L+ +
Sbjct: 313 VKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKD 372
Query: 293 KLGKAGLVRQTQ 304
KLG + + +
Sbjct: 373 KLGTCSRIYEQE 384
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 439 bits (1132), Expect = e-153
Identities = 122/304 (40%), Positives = 186/304 (61%), Gaps = 3/304 (0%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V GDV VTNDG TIL+ M V+H AK++++++++Q+ E+GDGTT VV+AG LL +
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 106
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+ +HP + G++ AAQ A + L+TIA V + E L K AMT++ K
Sbjct: 107 AEELLDQNVHPTIVVKGYQAAAQKAQELLKTIA--CEVGAQDKEILTKIAMTSITGKGAE 164
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
K ++AEI V AV AV D ++ V+ +LIK+E K G ++DT L+KGV++DK+ QM
Sbjct: 165 KAKEKLAEIIVEAVSAVVD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM 223
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
PK++ D K+A+L C E +T + + E + E++ MV ++KA+GA +
Sbjct: 224 PKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANV 283
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
CQ G DD A H L ++ + A R V D+E +A TG ++ L+++ LG AGLV
Sbjct: 284 LFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLV 343
Query: 301 RQTQ 304
+ +
Sbjct: 344 EERK 347
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 437 bits (1127), Expect = e-152
Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 4/306 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ VTND ATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +
Sbjct: 51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 110
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+ IHP I G+ LAA+ A + L+ IA V+PD+ E L+K A T++ K
Sbjct: 111 AEELLDQNIHPSIITKGYALAAEKAQEILDEIA--IRVDPDDEETLLKIAATSITGKNAE 168
Query: 121 KCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
+A++AV AV VA+ + K V+ + IK E K G +E++ LV+GVVIDK+ HP
Sbjct: 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
+MPK + + K+A++ E + +T +++ S + + E++ MVD + TGA
Sbjct: 229 RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA 288
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
+ Q G DD A H L + + AVR V D+E +A TG +IV ++LT E LG A
Sbjct: 289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAE 348
Query: 299 LVRQTQ 304
+V + +
Sbjct: 349 VVEERK 354
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 437 bits (1126), Expect = e-152
Identities = 120/306 (39%), Positives = 190/306 (62%), Gaps = 4/306 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ +TNDG TILK MDV+H AK+MV++S++QD +GDGTT V++AG LL+Q
Sbjct: 49 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQ 108
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A+ L+++ +HP I++G+ +A++ A + ++ I+ + D L+K A T+L SK +
Sbjct: 109 AQGLINQNVHPTVISEGYRMASEEAKRVIDEIST--KIGADEKALLLKMAQTSLNSKSAS 166
Query: 121 KCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
++AEI+ AV +VA+L K V+F+ I+V K GG ++DT L+ G+++DK+ HP
Sbjct: 167 VAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHP 226
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
MP ++D K+A+L P E +P+ NL ++ ++ E+ MVDK+K+ GA
Sbjct: 227 GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGA 286
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
+ I Q G DD A H L + + AVR V D++ +A TG IV +E++S LG A
Sbjct: 287 NVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAE 346
Query: 299 LVRQTQ 304
V Q +
Sbjct: 347 RVEQVK 352
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 436 bits (1125), Expect = e-152
Identities = 118/306 (38%), Positives = 183/306 (59%), Gaps = 6/306 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ ++NDGATILK MDV+H AK++V++S++QD +GDGTT VVL+G LL+Q
Sbjct: 50 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQ 109
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+G+HP I++G+ LA A K ++ IA + L K A+T L K
Sbjct: 110 AETLLDQGVHPTVISNGYRLAVNEARKIIDEIA----EKSTDDATLRKIALTALSGKNTG 165
Query: 121 KCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
+ +A++ V AV AVA++ K V+ IKV+ K GG + DT + G+VIDK+ H
Sbjct: 166 LSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHS 225
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
+MP +++ K+A++ E + + + + + ++ E F MV+K+K +GA
Sbjct: 226 KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGA 285
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
+ +CQ G DD A H L ++ + AVR V D+E +A TG +IV ++LT LG+A
Sbjct: 286 NVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAE 345
Query: 299 LVRQTQ 304
V + +
Sbjct: 346 TVEERK 351
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 436 bits (1125), Expect = e-152
Identities = 116/306 (37%), Positives = 183/306 (59%), Gaps = 4/306 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+T+TNDGATIL MD+ H AKL+VQ+++ QD+E DGT V+ +G L+++
Sbjct: 58 MLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKK 117
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LL K +HP I G++ A + A++ ++ +A V+ ++ + L K AMT+L SK +
Sbjct: 118 AEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQ--TVSINDTDLLRKIAMTSLSSKAVA 175
Query: 121 KCHRQMAEIAVNAVMAVADL--EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
+A+I V AV VA+L +K V+ + I++ K GG + DT LV G+V+DK+ HP
Sbjct: 176 GAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHP 235
Query: 179 QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
MPK L + K+A++ E +P+ + + ++ E+ VDK+ ATGA
Sbjct: 236 GMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGA 295
Query: 239 TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAG 298
+ ICQ G D+ A L +K + AVR D+E +A TGGR+V +E++ + LG A
Sbjct: 296 NVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYAS 355
Query: 299 LVRQTQ 304
L+ + +
Sbjct: 356 LIEERK 361
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 433 bits (1117), Expect = e-151
Identities = 113/307 (36%), Positives = 187/307 (60%), Gaps = 5/307 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ +TNDGATILK MD+ H AK++V++S++QD E+GDGTT VL+G LL +
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE L+ KG+H I++G+ AA+ + LETI ++PD+ LIK A T + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETIT--IAISPDDEAALIKIAGTAITGKGAE 118
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVN---FELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
+++ + V AV ++ + E+ + E IK+E + GG ++D+ L+ G+VIDK+ SH
Sbjct: 119 AYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSH 178
Query: 178 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237
P MP+++ + K+ +L+CP E + + + + S + E++ M +KV A+G
Sbjct: 179 PNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 297
A + CQ G DD A + + + + AVR V D++ ++ VTG I+ +++T+E +G A
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTA 298
Query: 298 GLVRQTQ 304
GLV + +
Sbjct: 299 GLVEEKE 305
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 434 bits (1119), Expect = e-151
Identities = 92/308 (29%), Positives = 160/308 (51%), Gaps = 7/308 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++V+S+ T++NDGATILKL+DV H AK +V +S++QD E+GDGTT V +LAG L+++
Sbjct: 52 LIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKE 111
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSKII 119
A+ L++GI I G+ A AV+ + +A + E L + A T + SK+I
Sbjct: 112 AKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLI 171
Query: 120 NKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP- 178
+ ++ V+AV+++ ++ D++ +LI ++ GG +E+++ + GV K FS+
Sbjct: 172 HNNADFFVKMCVDAVLSL---DRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAG 228
Query: 179 --QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236
Q PK+ + K+ L E K + V+ VEDY+ + E + + +V+ T
Sbjct: 229 FEQQPKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEET 288
Query: 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK 296
GA + + + D A + + V D+ + GG I ++ E LG
Sbjct: 289 GANIVLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGT 348
Query: 297 AGLVRQTQ 304
L + Q
Sbjct: 349 CALFEEMQ 356
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 432 bits (1114), Expect = e-151
Identities = 99/310 (31%), Positives = 173/310 (55%), Gaps = 8/310 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+ +S G++ ++NDG TILK M + H +A+++V++S +QD E GDGTT VV+L GALL
Sbjct: 47 MIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGA 106
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LL+KGIHP IAD F+ AA+ +V L + V+ + E L++ A T+L SKI++
Sbjct: 107 AERLLNKGIHPTIIADSFQSAAKRSVDILLEMCH--KVSLSDREQLVRAASTSLSSKIVS 164
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH-PQ 179
+ +A +AV++V+ ++D ++V+ I++ KVGG ++DT ++ GVV+ +
Sbjct: 165 QYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG 224
Query: 180 MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239
P K+ ++ PP+P T++N+ V ++ K E+ ++ K+K
Sbjct: 225 GPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCN 284
Query: 240 LAICQWGF-----DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKL 294
+ + Q +D A H L + + V+ + +IE ++ G + + E T ++L
Sbjct: 285 VLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRL 344
Query: 295 GKAGLVRQTQ 304
A LV +
Sbjct: 345 DSADLVEEID 354
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 429 bits (1106), Expect = e-150
Identities = 98/309 (31%), Positives = 159/309 (51%), Gaps = 9/309 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++V G T++NDGATILKL+DV H AK +V +++SQD E+GDGTT V +LA L+Q
Sbjct: 39 LIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQ 98
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSKI 118
+ +++G+HP I F A Q AV ++ IA + + L K AMT L SK+
Sbjct: 99 VKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKL 158
Query: 119 INKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHP 178
I++ A++ V+AVM + D + ++I ++ GG LE++ LV GV K FS+
Sbjct: 159 ISQQKAFFAKMVVDAVMMLDD----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYA 214
Query: 179 ---QMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235
PK+ + +A+L E K + V +VEDY+ + E ++K+
Sbjct: 215 GFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHH 274
Query: 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLG 295
+GA + + + D A + + V D++ + GG I L+S+ LG
Sbjct: 275 SGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLG 334
Query: 296 KAGLVRQTQ 304
+ + +TQ
Sbjct: 335 RCQVFEETQ 343
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 428 bits (1103), Expect = e-149
Identities = 96/313 (30%), Positives = 158/313 (50%), Gaps = 10/313 (3%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V GDVT+TNDGATILKL++V+H AK++ +L+ QD E+GDGTT VV++A LL+
Sbjct: 38 MLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKN 97
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A+ L+ + IHP + G+ LA + AV+++ + + LI A T++ SK+I
Sbjct: 98 ADELVKQKIHPTSVISGYRLACKEAVRYISENL-IINTDELGRDCLINAAKTSMSSKVIG 156
Query: 121 KCHRQMAEIAVNAVMAVADLEKRD---VNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
A + V+AV+A+ + R I V G ++ML+ G ++
Sbjct: 157 INGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGS 216
Query: 178 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237
MPK + + K+A L + + K + + E ++R+ E + + K+ ATG
Sbjct: 217 QGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATG 276
Query: 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEK---- 293
A + + G DD ++ AVR V D++ IA +G ++ L E+
Sbjct: 277 ANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEA 336
Query: 294 --LGKAGLVRQTQ 304
LG+A V Q +
Sbjct: 337 SMLGQAEEVVQER 349
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 428 bits (1104), Expect = e-149
Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 10/314 (3%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V G++ +T DG +L M + A L+ + + +QD+ GDGTT VV L G LL Q
Sbjct: 45 MLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQ 104
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A + +G+HP I DGFE+A + ++K L+ S ++ E L++ A ++L +K+
Sbjct: 105 AHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDA 164
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+ I +AV++V D + +++ ++++ +DT +KG+V+D HP M
Sbjct: 165 DLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDM 224
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVK------ 234
P +++ + IL E + + S + +L E++ + + K+
Sbjct: 225 PTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEV 284
Query: 235 ----ATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELT 290
+ I Q G D + + + + A+R ++E + +VTGG E+L+
Sbjct: 285 CGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLS 344
Query: 291 SEKLGKAGLVRQTQ 304
+ LG +GLV Q
Sbjct: 345 PQILGFSGLVYQET 358
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 428 bits (1103), Expect = e-149
Identities = 99/315 (31%), Positives = 153/315 (48%), Gaps = 12/315 (3%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V GD TVTNDGATIL L+DV H K++V+L+Q QD EIGDGTT VV++A LL++
Sbjct: 52 MLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKR 111
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A L+ IHP I GF +A + A++ + + S V+ E LI A T++ SKII
Sbjct: 112 ANELVKNKIHPTTIITGFRVALREAIRFINEVL-STSVDTLGKETLINIAKTSMSSKIIG 170
Query: 121 KCHRQMAEIAVNAVMAVADLE---KRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
+ + V+A++AV + + + V G +++LV G ++ +
Sbjct: 171 ADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVAS 230
Query: 178 PQMPK--ELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKA 235
MPK +VK+A L + R +++ E +++RK E V K+
Sbjct: 231 QAMPKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIID 290
Query: 236 TGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEK-- 293
GA + + G DD ++ ++ VR D+ IA TG +V L E+
Sbjct: 291 AGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETF 350
Query: 294 ----LGKAGLVRQTQ 304
LG V Q +
Sbjct: 351 ESSYLGLCDEVVQAK 365
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 425 bits (1096), Expect = e-148
Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 4/304 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+++ + VTND ATIL+ ++V H AK++V S Q+ E+GDGT V+V AGALLE
Sbjct: 39 MVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLEL 98
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LL G+ + +G+E+A + A + L + N +++ + T++ SK
Sbjct: 99 AEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG 158
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+A++ A +++ + N + I+V +G + + ++ G+V K+
Sbjct: 159 N-EVFLAKLIAQACVSIFP-DSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG--D 214
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATL 240
++D K+A+ +CPF+ +TK + ++S E+ K E+ + V + TGA +
Sbjct: 215 VTSVKDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANV 274
Query: 241 AICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLV 300
+ D A H + + VR D+ + G +PR E++G V
Sbjct: 275 VVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSV 334
Query: 301 RQTQ 304
++
Sbjct: 335 YLSE 338
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 425 bits (1095), Expect = e-148
Identities = 89/305 (29%), Positives = 168/305 (55%), Gaps = 5/305 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M++ G + +TNDG IL+ + V H AK M+++S++QD+E+GDGTT V++LAG +L
Sbjct: 37 MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSV 96
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AEH L++ +HP + + A + L+ I+ PV+ N + ++ +++ +K+I+
Sbjct: 97 AEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDTSNRDTMLNIINSSITTKVIS 154
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNF---ELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
+ IA++AV V E + +VE GG +ED+ +++GV+I+KD +H
Sbjct: 155 RWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTH 214
Query: 178 PQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATG 237
P+M + +++ ++ +L E + +++ ++++ ED+ + + E+E + + +
Sbjct: 215 PRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLK 274
Query: 238 ATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKA 297
+ I + G D A H L++ + A+R V D IA G RIV R EEL E +G
Sbjct: 275 PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTG 334
Query: 298 GLVRQ 302
+ +
Sbjct: 335 AGLLE 339
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 424 bits (1093), Expect = e-148
Identities = 97/310 (31%), Positives = 170/310 (54%), Gaps = 9/310 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+ GDVT+TNDGATILK M V H A+++V+LS++QD E GDGTT VV++AG+LL+
Sbjct: 39 MIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDS 98
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
LL KGIHP I++ F+ A + ++ L ++ PV + E L+ +A T+L SK+++
Sbjct: 99 CTKLLQKGIHPTIISESFQKALEKGIEILTDMSR--PVELSDRETLLNSAATSLNSKVVS 156
Query: 121 KCHRQMAEIAVNAVMAVAD-LEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQ 179
+ ++ ++V+AVM V D V+ IK+ K+GG ++D LV+G+V+ + ++
Sbjct: 157 QYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSG 216
Query: 180 MPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239
+ + + K+ ++ P+ + + V + + E+ ++V ++K TG
Sbjct: 217 ITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCN 275
Query: 240 LAICQWG-----FDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKL 294
+ + Q D A H L + ++ V+ + DIE I G + V ++ T++ L
Sbjct: 276 VLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADML 335
Query: 295 GKAGLVRQTQ 304
G A L +
Sbjct: 336 GSAELAEEVS 345
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 425 bits (1094), Expect = e-147
Identities = 75/310 (24%), Positives = 154/310 (49%), Gaps = 7/310 (2%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
++V+ G + +TND AT+L+ +D+ H K++V ++ Q ++GDGT V++LAG LL
Sbjct: 54 IIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNV 113
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
+E L+ G+ + I G+ +A + +K L+ + + ++ L+K + SK
Sbjct: 114 SEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYG 173
Query: 121 KCHRQMAEIAVNAVMAVADL-----EKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKD- 174
++E+ AV V + E N + I+V +GG L ++ ++KG+V +++
Sbjct: 174 S-EDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREP 232
Query: 175 FSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVK 234
H + E + K+A+ TCP + +TK + + + ++ + K E+++ +M+ ++
Sbjct: 233 EGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIA 292
Query: 235 ATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKL 294
G + G + A H L + + ++ ++ + V G +PR T E+L
Sbjct: 293 DMGVECIVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEEL 352
Query: 295 GKAGLVRQTQ 304
G V+ +
Sbjct: 353 GLVETVKTME 362
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 419 bits (1079), Expect = e-146
Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 9/308 (2%)
Query: 1 MMVSS--DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALL 58
+++SS D + VTNDGATILK + VD+ AK++V +S+ QDDE+GDGTT V VLA LL
Sbjct: 38 ILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELL 97
Query: 59 EQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIA-DSFPVNPDNLEPLIKTAMTTLGSK 117
+AE L+ K IHP I G+ A + A + L A D + L+ A TTL SK
Sbjct: 98 REAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSK 157
Query: 118 IINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
++ ++AV AV+ + N E I V K+GG L D+ L +G ++DK
Sbjct: 158 LLTHHKDHFTKLAVEAVLRLKG----SGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGV 213
Query: 178 PQMPKELRDVKLAILTCPFEPPRPKT-KHNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236
PK + + K+ I + + K + V S E+ E+EK V+++
Sbjct: 214 -NQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKH 272
Query: 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK 296
G I + + L + A+ +E +A+VTGG I F+ KLG
Sbjct: 273 GINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGS 332
Query: 297 AGLVRQTQ 304
L+ +
Sbjct: 333 CKLIEEVM 340
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 417 bits (1075), Expect = e-145
Identities = 101/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)
Query: 1 MMVSSDGDV-TVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 59
++ S+ + VTNDGATILK + +D+ AK++V +S+ QDDE+GDGTT V VL+ LL
Sbjct: 45 LLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLR 104
Query: 60 QAEHLLDKG-IHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL-EPLIKTAMTTLGSK 117
+AE L+D+ IHP I +G+ LA+ A+ L A + E LI A TTL SK
Sbjct: 105 EAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSK 164
Query: 118 IINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 177
I+++ AE+A NA++ + K N E I++ +GGKL D+ L +G ++ K F +
Sbjct: 165 ILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGN 220
Query: 178 PQMPKELRDVKLAILTCPFEPPRPKTK-HNLDVQSVEDYKELRKYEQEKFASMVDKVKAT 236
PK + + K+ I + + K V S +L K E+EK + + K+
Sbjct: 221 -NQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKF 279
Query: 237 GATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGK 296
G I + D L + ++ +E +A+VTGG +V F+E + KLG+
Sbjct: 280 GINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGE 339
Query: 297 AGLVRQTQ 304
++ +
Sbjct: 340 CDVIEEIM 347
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 414 bits (1067), Expect = e-144
Identities = 81/313 (25%), Positives = 150/313 (47%), Gaps = 13/313 (4%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+VS GD+ +T DG +L M + H A L+ +++ +QDD GDGTT V++ G LL+Q
Sbjct: 38 MLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQ 97
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A+ + +G+HP I +GFE A + A++ LE + D E LI A T+L +K+
Sbjct: 98 ADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV--SKEMDR-ETLIDVARTSLRTKVHA 154
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+ + E V++++A+ + ++ ++++ DT L++G+V+D HP M
Sbjct: 155 ELADVLTEAVVDSILAIKK-QDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDM 213
Query: 181 PKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA-- 238
K + D + E + + +S E+ ++L K E++ V K+
Sbjct: 214 KKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKV 273
Query: 239 -------TLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTS 291
+ I Q G D + L ++ + A+R ++E + + GG + ++L
Sbjct: 274 CGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNP 333
Query: 292 EKLGKAGLVRQTQ 304
+ L V +
Sbjct: 334 DCLLGHAGVYEYT 346
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 414 bits (1067), Expect = e-143
Identities = 102/315 (32%), Positives = 178/315 (56%), Gaps = 13/315 (4%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M++ G + +TNDG IL+ +DV H AK M++LS++QD+E+GDGTT V++LAG +L Q
Sbjct: 47 MLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQ 106
Query: 61 -AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKII 119
A +L++K IHP+ I + A A++ ++ ++ PV+ +N + K ++G+K +
Sbjct: 107 CAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSK--PVDVENDAAMKKLIQASIGTKYV 164
Query: 120 NKCHRQMAEIAVNAVMAVADLEKRDVNFE---------LIKVEGKVGGKLEDTMLVKGVV 170
+M E+A++AV V + V E ++VE GG + D+ ++KGV+
Sbjct: 165 IHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVL 224
Query: 171 IDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMV 230
++KD HP+M + + + ++ +L CP E + +++ N++++ ED+ + + E+E+ M
Sbjct: 225 LNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMC 284
Query: 231 DKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELT 290
+++ A TL I + G D A H LL+ +R V D IA VTG IV R E+L
Sbjct: 285 EQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLK 344
Query: 291 SEKLG-KAGLVRQTQ 304
+G GL +
Sbjct: 345 ESDVGTNCGLFKVEM 359
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 197 bits (504), Expect = 2e-63
Identities = 40/146 (27%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 160 LEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELR 219
+ED+ +++GV+I+KD +HP+M + +++ ++ +L E + +++ ++++ ED+ +
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 60
Query: 220 KYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTG 279
+ E+E + + + + I + G D A H L++ + A+R V D IA G
Sbjct: 61 QMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACG 120
Query: 280 GRIVPRFEELTSEKLGK-AGLVRQTQ 304
RIV R EEL + +G AGL+ +
Sbjct: 121 ARIVSRPEELREDDVGTGAGLLEIKK 146
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 193 bits (492), Expect = 6e-62
Identities = 44/139 (31%), Positives = 77/139 (55%)
Query: 166 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEK 225
+ G+VIDK+ H +MP +++ K+A++ E + + + + + ++ E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 285
F MV+K+K +GA + +CQ G DD A H L ++ + AVR V D+E +A TG +IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 286 FEELTSEKLGKAGLVRQTQ 304
++LT LG+A V + +
Sbjct: 121 LDDLTPSVLGEAETVEERK 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 3e-07
Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 72/253 (28%)
Query: 8 DVTVTNDGATILKLMDVDHEIAKLMVQLSQSQD--DEIGDGTTGVVVL----AGALLEQA 61
+V + A ++ K+++ ++ + D + TT + L ++
Sbjct: 252 NV---QN-AKAWNAFNLS---CKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 62 EHLLDK--------------GIHPIRIADGFELAAQCAVKHLETIADSFP-VNPDNLEPL 106
+ LL K +P R++ +A L T D++ VN D L +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIR-DGLATW-DNWKHVNCDKLTTI 358
Query: 107 IKTAMTTLGSKIINKCHRQMAEI---AVN---AVMAV--ADLEKRDVNFELIKVEGKVGG 158
I++++ L K +++ + + + ++++ D+ K DV ++ +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDV--MVVVNK----- 410
Query: 159 KLEDTMLVKGVVIDKDFSHPQMPKELR----DVKLAILTCPFEPPRPKTKHNLDVQSVED 214
L K +++K PKE + L + + H V+
Sbjct: 411 ------LHKYSLVEKQ------PKESTISIPSIYLELKV---KLENEYALHR---SIVDH 452
Query: 215 YKELRKYEQEKFA 227
Y + ++ +
Sbjct: 453 YNIPKTFDSDDLI 465
Score = 32.5 bits (73), Expect = 0.21
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 26/108 (24%)
Query: 174 DFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKE--LRKYEQEKFASMVD 231
DF + + +D+ L++ N D + V+D + L K E + D
Sbjct: 8 DFETGEHQYQYKDI-LSVF-------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 232 KVKATGATLAICQWGFDDEANHLLLQKQLPAV-RWVGG---PDIELIA 275
V T W LL KQ V ++V + + +
Sbjct: 60 AVSGTLRLF----W--------TLLSKQEEMVQKFVEEVLRINYKFLM 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 51/314 (16%), Positives = 82/314 (26%), Gaps = 114/314 (36%)
Query: 46 GTTGVV--VLAGALLEQA---EHLLDKGIHPIRIADGFE--LAAQCAVKHL----ETIAD 94
G TG ++ + + E I + F + A + + D
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILED 326
Query: 95 SFPVNPDNLEPLIKTAMTTLG---------SKIINKCHRQMAE-----IA-VNA----VM 135
S + + P + M L +NK + + I+ VN V+
Sbjct: 327 S--LENNEGVP---SPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 136 A--VADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVK----- 188
+ L +N L K K L+ + ++P R +K
Sbjct: 380 SGPPQSLYG--LNLTLRKA--KAPSGLDQS---------------RIPFSERKLKFSNRF 420
Query: 189 LAILTCPF-----EPPRPKTKHNLD--------------VQSVEDYKELRKYEQEKFASM 229
L + PF P +L V D +LR +
Sbjct: 421 LPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 230 VDKVKATGATLAICQWG--FDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 287
VD + +W +A H+L GP GG
Sbjct: 480 VDCI-----IRLPVKWETTTQFKATHIL----------DFGP---------GG--ASGLG 513
Query: 288 ELTSEKLGKAGLVR 301
LT G VR
Sbjct: 514 VLTHRNKDGTG-VR 526
Score = 35.8 bits (82), Expect = 0.019
Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 47/170 (27%)
Query: 14 DGATILK--LMDVDHEIAKLMVQLSQSQDDEIGDGT--TGVVVLAGALLEQA--EHLLDK 67
DG + +++ + S+ + T T + +E+A E L K
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFR---SEKGLL-SATQFTQPALTL---MEKAAFEDLKSK 1750
Query: 68 GI---------HPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIK-------TAM 111
G+ H + G E AA ++ AD +E L++ T
Sbjct: 1751 GLIPADATFAGHSL----G-EYAALASL------ADVMS-----IESLVEVVFYRGMTMQ 1794
Query: 112 TTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLE 161
+ + + + M IA+N A + + + + +V + G +E
Sbjct: 1795 VAVPRDELGRSNYGM--IAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 44.1 bits (105), Expect = 4e-05
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 10 TVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
T+TNDG +I K ++++ A+L+ ++++ DD GDGTT VLA AL+ + +
Sbjct: 47 TITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNV 106
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIA 93
G +P+ + G E A + + L A
Sbjct: 107 AAGANPLGLKRGIEKAVEKVTETLLKGA 134
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 43.7 bits (104), Expect = 5e-05
Identities = 22/88 (25%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 10 TVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
+T DG ++ K +++ + A+++ +++ +DE GDGTT VLA A++ + +
Sbjct: 48 RITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAV 107
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIA 93
G++P+ + G ++A V+ +++ A
Sbjct: 108 AAGMNPMDLKRGIDVATAKVVEAIKSAA 135
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 43.3 bits (103), Expect = 7e-05
Identities = 22/88 (25%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 10 TVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
T+T DG ++ + ++++ + A+++ +++ +D GDGTT VLA A++ + +
Sbjct: 47 TITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAV 106
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIA 93
G++P+ + G + A AV+ L+ ++
Sbjct: 107 AAGMNPMDLKRGIDKAVTVAVEELKALS 134
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 42.9 bits (102), Expect = 8e-05
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 10 TVTNDGATILKLMDVDHEI----AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLL 65
T+T DG T+ K ++++ + A+L+ +++ +D GDGTT VLA A++ + +
Sbjct: 47 TITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNV 106
Query: 66 DKGIHPIRIADGFELAAQCAVKHLETIA 93
G +P+ + G E A + AV+ ++ +A
Sbjct: 107 AAGANPLALKRGIEKAVEAAVEKIKALA 134
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ;
1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A*
1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A*
2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A*
3d6h_A* 2hbz_A* 2hbr_A* ...
Length = 178
Score = 28.0 bits (62), Expect = 3.2
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 195 PFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEAN 252
P P ++ N+ + S+E+ + + K + + ++DK T L IC FD
Sbjct: 2 PAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPR 59
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 27.6 bits (62), Expect = 4.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 256 LQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVR 301
L LP + + + E+ A++ P+FE E++GK G++R
Sbjct: 116 LDLILPPLYEILEKNGEVAALIK-----PQFE-AGREQVGKNGIIR 155
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 27.6 bits (62), Expect = 5.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 256 LQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLVR 301
L LPA+ + +++A+V P+FE E++GK G+VR
Sbjct: 164 LNLILPALAKILVDGGQVVALVK-----PQFE-AGREQIGKNGIVR 203
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 27.5 bits (62), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 144 DVNFELIKVEGKVGGKLEDTMLVKGVVI 171
NF L ++E G KL D++L + +VI
Sbjct: 296 HANFVLCRLENISGEKLYDSLLKEDIVI 323
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 146 NFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELR 185
N+ + G ++ D + + V++ + FS P + +R
Sbjct: 294 NYLFATPPDRDGKRVYDGLYARKVLV-RHFSDPLLAHGMR 332
>3cwc_A Putative glycerate kinase 2; structural genomics, center for
structural genomics of infec diseases, csgid, IDP122,
transferase; 2.23A {Salmonella typhimurium LT2}
Length = 383
Score = 27.1 bits (61), Expect = 7.6
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 50 VVVLAGALLEQAEHLLDKGI---HPI-RIADGFELAAQCAVKHLETIA 93
V+ +AG+L + + G+ + E A + A +++ A
Sbjct: 322 VIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTA 369
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.80A {Homo
sapiens} PDB: 3ode_A 2l31_A
Length = 111
Score = 26.1 bits (57), Expect = 9.0
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 192 LTCPFEP-PRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGAT 239
C + + ++ + L ++E + VK+ G
Sbjct: 57 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGLE 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0800 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,913,844
Number of extensions: 315381
Number of successful extensions: 1056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 54
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)