RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9923
(315 letters)
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 131 bits (331), Expect = 2e-38
Identities = 44/139 (31%), Positives = 77/139 (55%)
Query: 166 VKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEK 225
+ G+VIDK+ H +MP +++ K+A++ E + + + + + ++ E
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 226 FASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPR 285
F MV+K+K +GA + +CQ G DD A H L ++ + AVR V D+E +A TG +IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 286 FEELTSEKLGKAGLVRQTQ 304
++LT LG+A V + +
Sbjct: 121 LDDLTPSVLGEAETVEERK 139
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 131 bits (331), Expect = 2e-38
Identities = 48/138 (34%), Positives = 77/138 (55%)
Query: 167 KGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKF 226
+GVVIDK+ HP+MPK + + K+A++ E + +T +++ S + + E++
Sbjct: 1 RGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKML 60
Query: 227 ASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRF 286
MVD + TGA + Q G DD A H L + + AVR V D+E +A TG +IV
Sbjct: 61 KDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNV 120
Query: 287 EELTSEKLGKAGLVRQTQ 304
++LT E LG A +V + +
Sbjct: 121 KDLTPEDLGYAEVVEERK 138
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 130 bits (328), Expect = 4e-38
Identities = 49/137 (35%), Positives = 76/137 (55%)
Query: 168 GVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFA 227
G+++DK+ HP MP ++D K+A+L P E +P+ NL ++ ++ E+
Sbjct: 1 GIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLR 60
Query: 228 SMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFE 287
MVDK+K+ GA + I Q G DD A H L + + AVR V D++ +A TG IV +
Sbjct: 61 EMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTID 120
Query: 288 ELTSEKLGKAGLVRQTQ 304
E++S LG A V Q +
Sbjct: 121 EISSSDLGTAERVEQVK 137
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 128 bits (323), Expect = 4e-37
Identities = 36/144 (25%), Positives = 77/144 (53%)
Query: 162 DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKY 221
D+ +++GV+I+KD +HP+M + +++ ++ +L E + +++ ++++ ED+ + +
Sbjct: 1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60
Query: 222 EQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 281
E+E + + + + I + G D A H L++ + A+R V D IA G R
Sbjct: 61 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120
Query: 282 IVPRFEELTSEKLGKAGLVRQTQT 305
IV R EEL + +G + + +
Sbjct: 121 IVSRPEELREDDVGTGAGLLEIKK 144
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 94.8 bits (235), Expect = 1e-23
Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 3/200 (1%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ ++NDGATILK MDV+H AK++V++S++QD +GDGTT VVL+G LL+Q
Sbjct: 34 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQ 93
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+G+HP I++G+ LA A K ++ IA+ + + +
Sbjct: 94 AETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVG 153
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQM 180
+ E A+ + + + I K+ E + GV +D +
Sbjct: 154 GREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMK 213
Query: 181 PK---ELRDVKLAILTCPFE 197
K + VK L E
Sbjct: 214 AKGVVDPLRVKTHALESAVE 233
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 87.6 bits (217), Expect = 2e-22
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 98 VNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGK 155
V+PD+ E L+K A T++ K +A++AV AV VA+ + K V+ + IK E K
Sbjct: 1 VDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKK 60
Query: 156 VGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFE 197
G +E++ LVK V I + +V+ A+
Sbjct: 61 AGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVKV 99
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 84.9 bits (210), Expect = 3e-21
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 101 DNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGG 158
D L+K A T+L SK + ++AEI+ AV +VA+L K V+F+ I+V K GG
Sbjct: 3 DEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGG 62
Query: 159 KLEDTMLVKGVVI-----DKDFSHPQMPKELRDVKLAILTCPFE 197
++DT L+ V + + +M + + D L ++ E
Sbjct: 63 AIDDTQLINKAVSILVRGETEHVVDEMERSITD-SLHVVASALE 105
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 84.4 bits (208), Expect = 8e-20
Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 1/174 (0%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ +TNDG TILK MDV+H AK+MV++S++QD +GDGTT V++AG LL+Q
Sbjct: 30 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQ 89
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
A+ L+++ +HP I++G+ +A++ A + ++ I+ + A
Sbjct: 90 AQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYAAGGGATAAEIAFRLRSYAQKI 149
Query: 121 KCHRQMA-EIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDK 173
+Q+A E +A+ + + + I + K+ + G+ +
Sbjct: 150 GGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFT 203
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 78.0 bits (192), Expect = 8e-19
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 104 EPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLE--KRDVNFELIKVEGKVGGKLE 161
L K A+T L K + +A++ V AV AVA++ K V+ IKV+ K GG +
Sbjct: 4 ATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVN 63
Query: 162 DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTK 204
DT + V I + +V+ A+ K
Sbjct: 64 DTQFISAVSILI---RGGTDHVVSEVERALNDAIRVVAITKED 103
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 74.4 bits (182), Expect = 4e-16
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 8/157 (5%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQ 60
M+V S GD+ VTND ATIL +D+ H AK+MV+++++QD E GDGTT VV+AG LL +
Sbjct: 43 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 102
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIIN 120
AE LLD+ IHP I G+ LAA+ A + L+ IA + P L ++
Sbjct: 103 AEELLDQNIHPSIITKGYALAAEKAQEILDEIAI------RAVLPAGGAPEIELAIRLDE 156
Query: 121 KCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVG 157
+ + A+ L+ + L + G
Sbjct: 157 YAKQVGGKEALAIENFADALK--IIPKTLAENAGLDT 191
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
coli [TaxId: 562]}
Length = 252
Score = 71.0 bits (173), Expect = 6e-15
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 11/189 (5%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGA 56
++ S G T+T DG ++ + ++++ + A+++ +++ +D GDGTT VLA A
Sbjct: 38 VLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQA 97
Query: 57 LLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGS 116
++ + + G++P+ + G + A AV+ L+ S V LI+ A
Sbjct: 98 IITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA--LSVGVVAGGGVALIRVASKLADL 155
Query: 117 KIINKCHRQMAEIAVNAVMAV----ADLEKRDVNFELIKVEGKVGGKLEDTMLVK-GVVI 171
+ N ++A+ A+ A + + V+G G + + G +I
Sbjct: 156 RGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMI 215
Query: 172 DKDFSHPQM 180
D P
Sbjct: 216 DMGILDPTK 224
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 60.2 bits (145), Expect = 1e-11
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 6/150 (4%)
Query: 29 AKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKH 88
A+L+ ++++ DD GDGTT VLA AL+ + + G +P+ + G E A + +
Sbjct: 8 AELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTET 67
Query: 89 LETIADSFPVNPDNLE---PLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDV 145
L A L P + + E + + + LE V
Sbjct: 68 LLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVV 127
Query: 146 NFELIKVEGKVGGKLEDTM---LVKGVVID 172
++ + G + + L+ V D
Sbjct: 128 AEKVRNLPAGHGLNAQTGVYEDLLAAGVAD 157
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 60.2 bits (145), Expect = 3e-11
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 1 MMVSSDGDVTVTNDGATILKLMDVDHE----IAKLMVQLSQSQDDEIGDGTTGVVVLAGA 56
++ S G +T DG ++ K +++ + A+++ +++ +DE GDGTT VLA A
Sbjct: 38 VIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQA 97
Query: 57 LLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGS 116
++ + + G++P+ + G ++A V+ +++ + + L++ A G
Sbjct: 98 IVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSA--ARGIVVGGGVALVQGAKVLEGL 155
Query: 117 KIINKCHRQMAEIAVNAVMAVA 138
N I A+ A
Sbjct: 156 SGANSDQDAGIAIIRRALEAPM 177
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 29.8 bits (67), Expect = 0.24
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 1 MMVSSDGDVT--VTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALL 58
++++D V + N I+ + + I K E+ VV L G +
Sbjct: 65 KLLTADPKVEAILVNIFGGIVNCAIIANGITKAC--------RELELKVPLVVRLEGTNV 116
Query: 59 EQAEHLLDKGIHPIRIADGFELAAQCAVK 87
+A+++L PI A E AA+ AV
Sbjct: 117 HEAQNILTNSGLPITSAVDLEDAAKKAVA 145
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 28.2 bits (63), Expect = 0.73
Identities = 13/38 (34%), Positives = 13/38 (34%)
Query: 50 VVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVK 87
VV L G E L I A G AAQ V
Sbjct: 108 VVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVA 145
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 26.9 bits (59), Expect = 1.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 196 FEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGA 238
E R TK D+ +E ++EL E+E+ + + + A
Sbjct: 60 LERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAA 102
>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 26.0 bits (57), Expect = 3.3
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 61 AEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFP 97
++H +G+ + + + F L + L+T++ P
Sbjct: 96 SKHQGLEGLAIVSVHEAFGLGQEFNRHLLQTMSSRTP 132
>d1un8a1 a.208.1.1 (A:336-550) Citrobacter dihydroxyacetone kinase
extra ATP-binding domain {Citrobacter freundii [TaxId:
546]}
Length = 215
Score = 25.8 bits (56), Expect = 7.2
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 40 DDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVN 99
D ++GDG TG A A + LL + + + + L A + + S
Sbjct: 45 DAKVGDGDTGSTFAAAA--REIASLLHRQ--QLPLNNLATLFALIGERLTVVMGGSS--- 97
Query: 100 PDNLEPLIKTAMTTLGSKIINKC-HRQMAEIAVNAVMAVADLEKRD 144
L+ T G K+ + + + ++ D
Sbjct: 98 ----GVLMSIFFTAAGQKLEQGANVVEALNTGLAQMKFYGGADEGD 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,162,128
Number of extensions: 55931
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 21
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)