BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9925
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS--SQNHA 110
KV+GGT+V+NG+MY RG+ DYD++ G GW Y++VLP+F KSE NL+ ++ ++ HA
Sbjct: 145 KVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHA 204
Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
+GGLL V + P L + LL AG E+G+ V +G+ GF AQMT RNG R S+A
Sbjct: 205 KGGLLPVGKFPYNPPLSYALLKAGEEMGF--SVQDLNGQNSTGFMIAQMTARNGIRYSSA 262
Query: 171 KA 172
+A
Sbjct: 263 RA 264
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 4/122 (3%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS--SQNHA 110
KV+GGT+VLNG+MY RG+ DYD++ G GW Y +VLP+F KSE NL + ++ HA
Sbjct: 145 KVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHA 204
Query: 111 RGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
+GGLL V + P L + +L AG ELG+ V +G+ GF AQMT RNG R S+A
Sbjct: 205 KGGLLPVGKFPYNPPLSYAILKAGEELGF--SVHDLNGQNSTGFMIAQMTARNGIRYSSA 262
Query: 171 KA 172
+A
Sbjct: 263 RA 264
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+ + G
Sbjct: 83 KVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGGDG 142
Query: 113 GLLTVS-HYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAK 171
L T + + L L + AG+E GYP D +G +EGF MT +NG R S +
Sbjct: 143 PLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY-NGYQQEGFGPMHMTVKNGVRASTSN 201
Query: 172 A 172
A
Sbjct: 202 A 202
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 45
+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+
Sbjct: 85 LGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 83.6 bits (205), Expect = 7e-16, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 31 WGYKNVLPYFLKSEHNLQYNVR-------KVMGGTTVLNGLMYCRGDSSDYDEYEKLGAT 83
WGY SE Q N R KV+GG++ +NG++Y RG + D++ +E+LGA
Sbjct: 60 WGYL--------SEPEPQLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQ 111
Query: 84 GWGYKNVLPYFLKSEHNLQYNSSQNHARG--GLLTVSHYNDLPDLGHTLLAAGRELGYPT 141
GW Y +VLPYF + EH+ + + RG G L V + L H + AG++ G+
Sbjct: 112 GWAYADVLPYFKRMEHS---HGGEEGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEA 168
Query: 142 DVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
D G+ +EGF + TT G R SAA A
Sbjct: 169 TEDYNGGK-QEGFGLMEQTTWMGRRWSAATA 198
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D +E+LGA GW Y +VLPYF + EH+ + ++ RG
Sbjct: 81 KVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHS---HGGEDGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L H + AG++ G+ D +G +EGF + TT G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDY-NGSKQEGFGLMEQTTWRGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 SA 198
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D+D +E+LGA GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHS 128
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG S D+D +E+LGA GW Y +VLPY+ + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L H + AG++ G+ D +G +EGF + TT G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDY-NGSKQEGFGLMEQTTWRGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 SA 198
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG S D+D +E+LGA GW Y +VLPY+ + EH+
Sbjct: 83 IGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHS 128
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG S D++ +E+LGA GW Y +VLPY+ + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L H + AG+E G+ D +G +EGF + TT G R SAA
Sbjct: 138 TDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDY-NGSKQEGFGLMEQTTWRGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 SA 198
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG S D++ +E+LGA GW Y +VLPY+ + EH+
Sbjct: 83 IGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHS 128
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+ + G
Sbjct: 83 KVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGGDG 142
Query: 113 GLLTVS-HYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAK 171
L T + + L L + AG+E GYP D +G +EGF MT +NG R S +
Sbjct: 143 PLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDY-NGYQQEGFGPMHMTVKNGVRASTSN 201
Query: 172 A 172
A
Sbjct: 202 A 202
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 45
+GG++ +NG++Y RG + D+DE+E+ GA GW Y+ LPYF ++E+
Sbjct: 85 LGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAEN 129
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 81.6 bits (200), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + DYD + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYFKRMENSSGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG E G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYIQRGKRDNP-LFHAFVEAGHEAGFEVTEDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 81.6 bits (200), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+DE+E GA GW Y+ LPYF K+E + + RG
Sbjct: 83 KVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACLPYFRKAE---TWTGGADEYRG 139
Query: 113 GLLTVSHYN----DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLS 168
G V N L L + AG++ GYP D +G +EGF MT G R S
Sbjct: 140 GSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQDY-NGYQQEGFGPMHMTVDKGVRAS 198
Query: 169 AAKA 172
+ A
Sbjct: 199 TSNA 202
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 31 WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNV 90
W ++ P +E +L + K +GG++ +N ++Y RG DY +E+ G WG+K
Sbjct: 59 WAFQTA-PQQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRA 117
Query: 91 LPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRL 150
F K EHN +++ S H G L VS DL L + + AG E + D +G
Sbjct: 118 FALFKKLEHNQRFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNGDF-NGAH 176
Query: 151 REGFYRAQMTTRNGARLSAAKA 172
+EG Q+T ++G R S+A+A
Sbjct: 177 QEGVGFYQVTQKHGQRWSSARA 198
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 80.5 bits (197), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NGL+Y RG + D++ +E+LGA GW Y +VLPYF + EH+ + + RG
Sbjct: 81 KVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L H + AG + G+ D +G +EGF + T NG R SAA
Sbjct: 138 TDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDY-NGSKQEGFGLMEQTIHNGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 NA 198
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NGL+Y RG + D++ +E+LGA GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHS 128
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG + G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYVQRGKRDNP-LFHAFVEAGHQAGFEVTDDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG + G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYVQRGKRDNP-LFHAFVEAGHQAGFEVTDDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG + G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYVQRGKRDNP-LFHAFVEAGHQAGFEVTDDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG + G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYVQRGKRDNP-LFHAFVEAGHQAGFEVTDDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L + AG++ G+ T D +G +EGF + T +G R SAA
Sbjct: 138 TDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDY-NGSKQEGFGLMEQTIFSGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 NA 198
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D+D + + GA GW Y +VLPYF + E++ G
Sbjct: 81 KVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYFKRMENSQGGQEGWRGTNG 140
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
L D P L H + AG + G+ D +G +EGF + T NG R SAA A
Sbjct: 141 PLYVQRGKRDNP-LFHAFVEAGHQAGFEVADDY-NGEKQEGFGPMEQTIHNGRRWSAANA 198
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L + AG++ G+ T D +G +EGF + T G R SAA
Sbjct: 138 TDGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDY-NGSKQEGFGLMEQTIFGGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 NA 198
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L + AG++ G+ T D +G +EGF + T G R SAA
Sbjct: 138 TDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDY-NGSKQEGFGLMEQTIFAGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 NA 198
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D++ +E+LGA+GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHS 128
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 77.8 bits (190), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
KV+GG++ +NG++Y RG + D++ +E+LGA GW Y +VLPYF + EH+ + + RG
Sbjct: 81 KVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHS---HGGEEGWRG 137
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L V L + AG++ G+ T D +G +EGF + T +G R SAA
Sbjct: 138 TDGPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDY-NGSKQEGFGLMEQTIFSGRRWSAA 196
Query: 171 KA 172
A
Sbjct: 197 NA 198
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D++ +E+LGA GW Y +VLPYF + EH+
Sbjct: 83 IGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHS 128
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHAR- 111
KV+GG++ +NG++Y RG + D+D + + GATGWG+ +VLPYF + E N + ++ R
Sbjct: 82 KVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDN---DGGEDGWRG 138
Query: 112 -GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
GG L V + L + AGR+ G+ D +G +EGF + T G R SAA
Sbjct: 139 HGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDY-NGSKQEGFGPMEQTISGGRRWSAA 197
Query: 171 KA 172
A
Sbjct: 198 SA 199
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 46
+GG++ +NG++Y RG + D+D + + GATGWG+ +VLPYF + E N
Sbjct: 84 IGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYFKRMEDN 129
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 77.0 bits (188), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
+V+GG++ +NG++Y RG + DYDE+ + GA GW Y+ LPYF ++E + ++ RG
Sbjct: 83 RVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAE---SWIHGEDTYRG 139
Query: 113 GLLTVSHYN----DLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLS 168
G V N +L L + AG++ GYP D +G +EGF MT G R S
Sbjct: 140 GDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPKTDDY-NGYQQEGFGPMHMTVDKGIRAS 198
Query: 169 AAKA 172
+ A
Sbjct: 199 TSNA 202
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSE 44
+GG++ +NG++Y RG + DYDE+ + GA GW Y+ LPYF ++E
Sbjct: 85 LGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQECLPYFRRAE 128
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 76.3 bits (186), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
+V GG++ LN ++Y RG + DY+ + + GA GW Y + LPYF K++ ++ N RG
Sbjct: 131 RVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQ---KHELGANMYRG 187
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L VS L L A R+ GYP D+ +G +EGF MT G R S A
Sbjct: 188 GDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDM-NGFQQEGFGWMDMTIHQGKRWSTA 246
Query: 171 KA 172
A
Sbjct: 247 SA 248
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
+V GG++ LN ++Y RG + DY+ + + GA GW Y + LPYF K++ ++ N RG
Sbjct: 128 RVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQ---RHELGANMYRG 184
Query: 113 --GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAA 170
G L VS L L A R+ GYP D+ +G +EGF MT G R S A
Sbjct: 185 GDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDM-NGFQQEGFGWMDMTVHQGKRWSTA 243
Query: 171 KA 172
A
Sbjct: 244 CA 245
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 74.7 bits (182), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
+V GG++ LN ++Y RG + DY+ +++ GA GW Y + LPYF K++ + + +S+
Sbjct: 126 RVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH-ELGASRYRGAD 184
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
G L VS L L A ++ GYP D+ +G +EGF MT G R SAA A
Sbjct: 185 GPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDM-NGFQQEGFGWMDMTIHEGKRWSAACA 243
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
Query: 46 NLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS 105
+ Y +++GG + +N ++ RG SD+D + GA GW +++V YF++SE N ++
Sbjct: 75 QIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGNAVFSG 134
Query: 106 SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGA 165
+ H G L VS+ + + + +E+G P + D +G +EG QMT RN
Sbjct: 135 TW-HGTNGPLGVSNLAEPNPTSRAFVQSCQEMGLPYNPDF-NGASQEGAGIYQMTIRNNR 192
Query: 166 RLSAA 170
R S A
Sbjct: 193 RCSTA 197
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYN 50
+GG + +N ++ RG SD+D + GA GW +++V YF++SE N ++
Sbjct: 84 LGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGNAVFS 133
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNSSQNHARG 112
K +GG++ +N ++Y RG DY +E+ WG+ L F + E N +++ S++H
Sbjct: 80 KTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRALELFKRLECNQRFDKSEHHGVD 139
Query: 113 GLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
G L VS + L + AG E + D +G ++G Q+T +NG R S+A+A
Sbjct: 140 GELAVSDLKYINPLSKAFVQAGMEANINFNGDF-NGEYQDGVGFYQVTQKNGQRWSSARA 198
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 66.6 bits (161), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+DE+ KL G W Y N LPYF K+E ++ H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDEWAKLPGLEDWNYLNCLPYFRKAETR-DIGANDYHGD 141
Query: 112 GGLLTVSHYNDLPD-LGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSA 169
G ++V+ + L H ++ AG + GYP D+ +G +EGF T T +G R S
Sbjct: 142 SGPVSVTTPKKGNNVLFHAMVEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPHGRRAST 200
Query: 170 AKA 172
A+
Sbjct: 201 ARG 203
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+DE+ KL G W Y N LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDEWAKLPGLEDWNYLNCLPYFRKAE 129
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E ++ H
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAETR-DIGANDYHGG 143
Query: 112 GGLLTVSH-YNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSA 169
G ++V+ ND L H ++ AG + GYP D+ +G +EGF T T G R S
Sbjct: 144 DGPVSVATPKNDNNVLFHAMVEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPRGRRAST 202
Query: 170 AKA 172
A+
Sbjct: 203 ARG 205
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E ++ H
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAETR-DIGANDYHGG 143
Query: 112 GGLLTVSH-YNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSA 169
G ++V+ ND L H ++ AG + GYP D+ +G +EGF T T G R S
Sbjct: 144 DGPVSVATPKNDNNVLFHAMVEAGVQAGYPRTGDL-NGYQQEGFGPMDRTVTPRGRRAST 202
Query: 170 AKA 172
A+
Sbjct: 203 ARG 205
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G W Y++VLPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYRDVLPYFRKAE 131
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E + +
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAETRDIGANDYHGGE 144
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + ND L ++ AG + GYP D+ +G +EGF T T G R S A
Sbjct: 145 GPVSVATPKNDNNVLFQAMVDAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPQGRRASTA 203
Query: 171 KA 172
+
Sbjct: 204 RG 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E + +
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAETRDIGANDYHGGE 144
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + ND L ++ AG + GYP D+ +G +EGF T T G R S A
Sbjct: 145 GPVSVATPKNDNNVLFQAMVDAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPQGRRASTA 203
Query: 171 KA 172
+
Sbjct: 204 RG 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E + +
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAETRDIGANDYHGGE 144
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + ND L ++ AG + GYP D+ +G +EGF T T G R S A
Sbjct: 145 GPVSVATPKNDNNVLFQAMVDAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPQGRRASTA 203
Query: 171 KA 172
+
Sbjct: 204 RG 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G WGY++VLPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYRDVLPYFRKAE 131
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH---NLQYNSSQNH 109
KV+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+ + S +
Sbjct: 82 KVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDS 141
Query: 110 ARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSA 169
G L +S + LAA RE G+ + EGF +T R GAR S
Sbjct: 142 GVTGPLHISRQRSPRSVTAAWLAAARECGFAAARP--NSPRPEGFCETVVTQRRGARFST 199
Query: 170 AKA 172
A A
Sbjct: 200 ADA 202
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 45
+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+
Sbjct: 84 LGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH---NLQYNSSQNH 109
KV+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+ + S +
Sbjct: 82 KVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIENVTAAWHFVSGDDS 141
Query: 110 ARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSA 169
G L +S + LAA RE G+ + EGF +T R GAR S
Sbjct: 142 GVTGPLHISRQRSPRSVTAAWLAAARECGFAAARP--NSPRPEGFCETVVTQRRGARFST 199
Query: 170 AKA 172
A A
Sbjct: 200 ADA 202
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 45
+GG++ +N +M+ RG +SDYDE+ W Y +VL YF + E+
Sbjct: 84 LGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYADVLGYFRRIEN 128
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E + +
Sbjct: 85 KGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAETRDIGPNDYHGGE 144
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + L H ++ AG + GYP D+ +G +EGF T T+NG R S A
Sbjct: 145 GPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTKNGRRASTA 203
Query: 171 K 171
+
Sbjct: 204 R 204
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYLDCLPYFRKAE 131
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + +
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETRDVGPNDFHGGE 142
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + D L H ++AAG + GYP D+ +G +EGF T T G R S A
Sbjct: 143 GPVSVTTPKIDNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGRRASTA 201
Query: 171 KA 172
+
Sbjct: 202 RG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + +
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETRDVGPNDFHGGE 142
Query: 112 GGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGARLSAA 170
G + + D L H ++AAG + GYP D+ +G +EGF T T G R S A
Sbjct: 143 GPVSVTTPKIDNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGRRASTA 201
Query: 171 KA 172
+
Sbjct: 202 RG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVSVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVSVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVSVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVSVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E + H
Sbjct: 85 KGLGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAETR-DIGPNDYHGG 143
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P G H ++ AG + GYP D+ +G +EGF T T NG
Sbjct: 144 DGPVSVT----TPKAGNNPLFHAMVEAGVQAGYPRTEDL-NGYQQEGFGPMDRTVTPNGR 198
Query: 166 RLSAAK 171
R S A+
Sbjct: 199 RASTAR 204
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ DYD + KL G W Y + LPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNAMDYDGWAKLPGLEDWSYLDCLPYFRKAE 131
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G + V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVNVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E + H
Sbjct: 83 KGLGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAETR-DIGPNDFHGG 141
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G + V+ P +G H ++AAG + GYP D+ +G +EGF T T G
Sbjct: 142 EGPVNVT----TPKIGNNPLFHAMVAAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPKGR 196
Query: 166 RLSAAKA 172
R S A+
Sbjct: 197 RASTARG 203
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + L G W Y + LPYF K+E
Sbjct: 85 LGGSSLINGMCYIRGNAMDFDHWASLSGLEDWSYLDCLPYFRKAE 129
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ DYD + K+ G W Y LPYF ++E + H
Sbjct: 87 KGLGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNYLQCLPYFKRAETR-DIGPNDYHGG 145
Query: 112 GGLLTVSHYND-LPDLGHTLLAAGRELGYPTDVDIGHGRLREGF-YRAQMTTRNGARLSA 169
G ++V+ + +L + AG E GYP D+ +G +EGF + TT NG R S
Sbjct: 146 DGPVSVATPKEGNNELYGAFIRAGIEAGYPATEDV-NGYQQEGFGPMDRTTTPNGRRAST 204
Query: 170 AKA 172
A+
Sbjct: 205 ARG 207
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ DYD + K+ G W Y LPYF ++E
Sbjct: 89 LGGSSLINGMCYLRGNALDYDNWAKIPGLEDWNYLQCLPYFKRAE 133
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ DYD + K G W Y + LPYF KSE + H
Sbjct: 87 KGLGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDYLSCLPYFKKSETR-DIGPNDYHGG 145
Query: 112 GGLLTVSHYNDLPDLGH-----TLLAAGRELGYPTDVDIGHGRLREGF-YRAQMTTRNGA 165
G ++V+ P G+ T + AG++ GYP D+ +G +EGF + T G
Sbjct: 146 DGPVSVT----TPKAGNNPLYRTFIEAGKQAGYPETEDV-NGYQQEGFGPMDRFVTPKGR 200
Query: 166 RLSAAKA 172
R S A+
Sbjct: 201 RASTARG 207
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ DYD + K G W Y + LPYF KSE
Sbjct: 89 LGGSSLINGMCYIRGNALDYDHWAKQPGLEEWDYLSCLPYFKKSE 133
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ DYD + K G W Y + LPYF K+E + H
Sbjct: 87 KGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAETR-DIGPNDYHGG 145
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P G H ++ AG + G+P D+ +G +EGF T T NG
Sbjct: 146 EGPVSVT----TPKAGNNPLFHAMVEAGVQAGFPRTDDL-NGYQQEGFGPMDRTVTPNGR 200
Query: 166 RLSAAKA 172
R S A+
Sbjct: 201 RASTARG 207
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ DYD + K G W Y + LPYF K+E
Sbjct: 89 LGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLDCLPYFRKAE 133
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 53 KVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNSSQNHAR 111
K +GG++++NG+ Y RG++ D+D + K G W Y + LPYF K+E + H
Sbjct: 85 KGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAESR-DIGPNDYHGG 143
Query: 112 GGLLTVSHYNDLPDLG-----HTLLAAGRELGYPTDVDIGHGRLREGFYRAQMT-TRNGA 165
G ++V+ P G H ++ AG + GYP D+ +G +EGF T T G
Sbjct: 144 DGPVSVT----TPKAGNNPLFHAMVEAGVQAGYPRTDDL-NGYQQEGFGPMDRTVTPQGR 198
Query: 166 RLSAAKA 172
R S A+
Sbjct: 199 RASTARG 205
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSE 44
+GG++++NG+ Y RG++ D+D + K G W Y + LPYF K+E
Sbjct: 87 LGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYHDCLPYFRKAE 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,371,819
Number of Sequences: 539616
Number of extensions: 3099429
Number of successful extensions: 7072
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 6572
Number of HSP's gapped (non-prelim): 296
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)