Query psy9925
Match_columns 180
No_of_seqs 190 out of 1438
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:09:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 4.7E-32 1E-36 238.2 9.7 154 24-179 106-264 (623)
2 TIGR01810 betA choline dehydro 99.9 3.3E-26 7.1E-31 202.6 11.3 147 27-177 55-203 (532)
3 PRK02106 choline dehydrogenase 99.9 2.8E-25 6E-30 197.8 11.5 147 27-177 61-210 (560)
4 COG2303 BetA Choline dehydroge 99.9 2.4E-25 5.2E-30 197.4 10.5 146 28-176 61-211 (542)
5 PF00732 GMC_oxred_N: GMC oxid 99.9 2.8E-23 6.2E-28 170.5 4.2 148 27-178 53-203 (296)
6 PLN02785 Protein HOTHEAD 99.6 1.3E-15 2.8E-20 136.5 7.3 117 27-171 104-225 (587)
7 KOG1238|consensus 99.0 2.5E-10 5.5E-15 101.5 3.4 66 1-66 140-209 (623)
8 TIGR01810 betA choline dehydro 98.7 1.4E-08 3E-13 90.3 4.8 84 1-86 82-167 (532)
9 PRK02106 choline dehydrogenase 98.5 8.1E-08 1.8E-12 86.0 4.7 62 1-63 88-150 (560)
10 COG2303 BetA Choline dehydroge 98.5 1.5E-07 3.4E-12 84.0 5.0 84 1-85 87-175 (542)
11 PF00732 GMC_oxred_N: GMC oxid 98.2 6.1E-07 1.3E-11 73.5 1.8 62 1-63 80-142 (296)
12 PLN02785 Protein HOTHEAD 97.5 3E-05 6.6E-10 70.0 1.4 39 1-45 131-169 (587)
13 TIGR02462 pyranose_ox pyranose 43.5 7.3 0.00016 35.3 -0.2 50 49-102 111-162 (544)
14 PHA00442 host recBCD nuclease 27.2 59 0.0013 20.0 2.0 14 87-100 15-28 (59)
No 1
>KOG1238|consensus
Probab=99.97 E-value=4.7e-32 Score=238.17 Aligned_cols=154 Identities=32% Similarity=0.471 Sum_probs=140.5
Q ss_pred HhcCCCCCccccccc--hhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcC
Q psy9925 24 EKLGATGWGYKNVLP--YFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN 100 (180)
Q Consensus 24 ~~~~~~~W~~~t~~~--~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~ 100 (180)
.+.+..+|+|.++|+ +|..+.++ +.|||||+|||||.||+|+|+||...|||+|++.|++||+|++|+|||+|+|+.
T Consensus 106 ~q~s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~ 185 (623)
T KOG1238|consen 106 LQLSLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDK 185 (623)
T ss_pred hccccccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhc
Confidence 446789999999999 66678877 999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC--CCCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcccc
Q psy9925 101 LQYN--SSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVEC 178 (180)
Q Consensus 101 ~~~~--~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~~ 178 (180)
..+. .+++|+..||+.|+...+..++..+|.++..++|.+. .|+|+..+.|+...+.++++|.|.|++.+||.|.-
T Consensus 186 ~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~--~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~ 263 (623)
T KOG1238|consen 186 VVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSI--FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIR 263 (623)
T ss_pred cCCCcccCcccccCCcceeccccccCchhhHhHHhHHhcCCCc--cCCCCccccchhhhhccccCCEEEEehhhhhhhhh
Confidence 6553 4568999999999999999999999999999999655 45999999999999999999999999999998864
Q ss_pred c
Q psy9925 179 I 179 (180)
Q Consensus 179 ~ 179 (180)
+
T Consensus 264 ~ 264 (623)
T KOG1238|consen 264 L 264 (623)
T ss_pred c
Confidence 3
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.93 E-value=3.3e-26 Score=202.55 Aligned_cols=147 Identities=28% Similarity=0.458 Sum_probs=131.2
Q ss_pred CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925 27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 104 (180)
Q Consensus 27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~ 104 (180)
..++|.|+++||. .++++ +.+++||+|||||.||+|+|.|+.+.|||.|++. |+++|+|++|+|||+|+|++..+
T Consensus 55 ~~~~~~~~~~p~~--~~~~~~~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~- 131 (532)
T TIGR01810 55 KRYNWIYETEPEP--HMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG- 131 (532)
T ss_pred CCcceeeEcccCC--CCCCceEeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC-
Confidence 3468999999997 56677 8899999999999999999999999999999984 99999999999999999998754
Q ss_pred CCCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925 105 SSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE 177 (180)
Q Consensus 105 ~~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~ 177 (180)
..+.||.+||+.|..+....+..+.|.++++++|++. ..|+|++...|++.++.++.+|.|++++.+||.|.
T Consensus 132 ~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a 203 (532)
T TIGR01810 132 EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNK-TPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPA 203 (532)
T ss_pred CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCc-cCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhh
Confidence 2467999999999988777888999999999999998 66799887888888888888999999999999874
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=99.92 E-value=2.8e-25 Score=197.77 Aligned_cols=147 Identities=32% Similarity=0.533 Sum_probs=130.5
Q ss_pred CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925 27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 104 (180)
Q Consensus 27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~ 104 (180)
..++|.|.+.||. .++++ +.+++||+|||||.||+|+|.|+.+.|||.|++. |+++|+|++|+|||+|+|++..+
T Consensus 61 ~~~~~~~~~~p~~--~~~~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~- 137 (560)
T PRK02106 61 KRYNWAYETEPEP--HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG- 137 (560)
T ss_pred CceeeceecccCC--CCCCCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC-
Confidence 4578999999997 45666 8899999999999999999999999999999998 99999999999999999998744
Q ss_pred CCCCCCCCCceeeecC-CCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhccc
Q psy9925 105 SSQNHARGGLLTVSHY-NDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVE 177 (180)
Q Consensus 105 ~~~~hg~~Gpl~v~~~-~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~ 177 (180)
..+.||..||++++.+ ....++...|.++++++|++. ..|+|++...|++.++.++.+|.|++++.+||.|.
T Consensus 138 ~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~-~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a 210 (560)
T PRK02106 138 EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPR-TDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPA 210 (560)
T ss_pred CccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCc-CCCCCCCCCceeEEEeeecCCCEEEChHHHhhccc
Confidence 3457999999999876 566788999999999999998 66688887889888888888999999999999875
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.92 E-value=2.4e-25 Score=197.45 Aligned_cols=146 Identities=34% Similarity=0.589 Sum_probs=133.5
Q ss_pred CCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC-
Q psy9925 28 ATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN- 104 (180)
Q Consensus 28 ~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~- 104 (180)
.++|.|.++++. .++++ +.+++||+|||||.||+|+|.|+.+.||+.|++. |+++|+|++|+|||+|+|++....
T Consensus 61 ~~~w~~~~~~~~--~~~~r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g 138 (542)
T COG2303 61 RYDWGFRTEPEP--HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGG 138 (542)
T ss_pred ccCCccccCccc--CCCCccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCC
Confidence 689999999998 67778 9999999999999999999999999999999988 899999999999999999976542
Q ss_pred C--CCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcc
Q psy9925 105 S--SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFV 176 (180)
Q Consensus 105 ~--~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~ 176 (180)
. ...||..||+.+..+....++..+|.++..++|++. .+|+|+..+.|++.++.++.+|.|.+++.+||.|
T Consensus 139 ~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~-~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~ 211 (542)
T COG2303 139 QDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPT-TPDPNGADQEGFGPYCVTICNGRRWSAARAYLKP 211 (542)
T ss_pred CCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCc-CcccccCCCCCcccceeeccCCeEeechhhcchh
Confidence 1 347999999999888666899999999999999999 7779999999999999999999999999999987
No 5
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.87 E-value=2.8e-23 Score=170.52 Aligned_cols=148 Identities=30% Similarity=0.434 Sum_probs=123.2
Q ss_pred CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHh-ccCCCCccchhHHHHhhhcCCCCC
Q psy9925 27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN 104 (180)
Q Consensus 27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~-g~~gW~~~~v~pyf~k~E~~~~~~ 104 (180)
..++|.|.+.++. .++++ +.+++|++|||||.||+|++.|+.+.||++|... |.++|+|+++.|||+|+|++..+.
T Consensus 53 ~~~~~~~~~~~~~--~~~~~~~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~ 130 (296)
T PF00732_consen 53 SEYDWGYYSGPQP--FLNGRTINWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS 130 (296)
T ss_dssp TTTBBGEEECEEE--CTTTTSEEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB
T ss_pred ccccccccccccc--ccccceeeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc
Confidence 4578988888886 56667 7889999999999999999999999999999998 899999999999999999998773
Q ss_pred CCCCCCCCCceee-ecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCCeechhhHhhhcccc
Q psy9925 105 SSQNHARGGLLTV-SHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDFVEC 178 (180)
Q Consensus 105 ~~~~hg~~Gpl~v-~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayl~~~~ 178 (180)
...|+.+++++| ..+....+....+.++++++|++. ..|++.....|+.....++.+|.|+|++.+||.+.+
T Consensus 131 -~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~ 203 (296)
T PF00732_consen 131 -SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPV-PQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPAL 203 (296)
T ss_dssp -GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHB-CSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHT
T ss_pred -ccccccccccccccccCCCCHHHHHHHHHHHHcCCcc-ccccccccccccccccccccchhceehhhcccchhh
Confidence 678999999999 555666788899999999999996 555888888888877777789999999999997653
No 6
>PLN02785 Protein HOTHEAD
Probab=99.60 E-value=1.3e-15 Score=136.52 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=88.5
Q ss_pred CCCCCccccccchhhhcccc-cccccccccCCcccccceeccCCCchhHHHHHHhccCCCCccchhHHHHhhhcCCCCCC
Q psy9925 27 GATGWGYKNVLPYFLKSEHN-LQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHNLQYNS 105 (180)
Q Consensus 27 ~~~~W~~~t~~~~~~~~~~~-~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~~~~v~pyf~k~E~~~~~~~ 105 (180)
...+|+|.+.+|. ...++ +.++|||+|||||+||+|+|.|+.+.+|++ .||+|+.++|||+++|+....
T Consensus 104 ~~~d~~~~~~~q~--~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-- 173 (587)
T PLN02785 104 GLADTSPTSASQA--FISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-- 173 (587)
T ss_pred cccccCCcccccc--ccCCCceeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc--
Confidence 3468999999997 44556 889999999999999999999999999963 689999999999999975311
Q ss_pred CCCCCCCCceeeecCCCCChHHHHHHHHHHHcCCCCCCCCCCCCCCcccc--cccccc--cCCeechhhH
Q psy9925 106 SQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDIGHGRLREGFY--RAQMTT--RNGARLSAAK 171 (180)
Q Consensus 106 ~~~hg~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~~~d~n~~~~~G~~--~~~~~~--~~g~R~sa~~ 171 (180)
. ....++..+|++|++++|++. +|+....+.. ....++ ..|+|+++++
T Consensus 174 -------------~-~~~~~~~~~~~~a~~e~G~~~----~n~~~~d~~~G~~~g~~i~~~~g~R~saa~ 225 (587)
T PLN02785 174 -------------W-PKVAPWQAALRDSLLEVGVSP----FNGFTYDHVYGTKVGGTIFDEFGRRHTAAE 225 (587)
T ss_pred -------------C-CCcChHHHHHHHHHHHcCCCc----cCCCCCCCccceeeeEEEeCCCCEEcCHHH
Confidence 1 123678899999999999975 3322211111 122345 4799999987
No 7
>KOG1238|consensus
Probab=98.99 E-value=2.5e-10 Score=101.52 Aligned_cols=66 Identities=39% Similarity=0.818 Sum_probs=53.8
Q ss_pred CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhcccc-ccccc---ccccCCcccccceec
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEHN-LQYNV---RKVMGGTTVLNGLMY 66 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~~-~~~~~---g~~lGGss~in~~~~ 66 (180)
|||||+||+|+|+||++.|||+|++.++.+|+|+.+.++|++.|+. .+.+. -...+|-..++...+
T Consensus 140 LGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~ 209 (623)
T KOG1238|consen 140 LGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVY 209 (623)
T ss_pred ecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccc
Confidence 7999999999999999999999999999999999999999888875 33222 244566666666444
No 8
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.71 E-value=1.4e-08 Score=90.30 Aligned_cols=84 Identities=24% Similarity=0.563 Sum_probs=59.6
Q ss_pred CCcccccccceeccCChhhhHHHHh-cCCCCCccccccchhhhcccccccccccccCCcccccceeccCCCchhHHHHHH
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK 79 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~-~~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~~~~~r~~~~~~d~W~~ 79 (180)
|||||++|.|+|+|+++.|||.|++ .+..+|+|+.+.++|++++..+.. ....+|.+++++.. ........++.|.+
T Consensus 82 lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~-~~~~~g~~G~~~v~-~~~~~~~~~~~~~~ 159 (532)
T TIGR01810 82 LGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG-EKPYRGHDGPIKVR-RGPADNPLFQAFIE 159 (532)
T ss_pred cCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC-CcccCCCCCCEEEe-cCCCCCHHHHHHHH
Confidence 7999999999999999999999988 677899999999999888865221 11346667777653 22222334555554
Q ss_pred h-ccCCCC
Q psy9925 80 L-GATGWG 86 (180)
Q Consensus 80 ~-g~~gW~ 86 (180)
. ...||.
T Consensus 160 a~~~~G~~ 167 (532)
T TIGR01810 160 AGVEAGYN 167 (532)
T ss_pred HHHHcCCC
Confidence 4 344553
No 9
>PRK02106 choline dehydrogenase; Validated
Probab=98.54 E-value=8.1e-08 Score=85.96 Aligned_cols=62 Identities=39% Similarity=0.828 Sum_probs=48.9
Q ss_pred CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccccccccCCcccccc
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNG 63 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~ 63 (180)
|||||++|.|+|+|+++.|||.|... ++.+|+|+.+.++|++++.... .....+|-.++++.
T Consensus 88 lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~-~~~~~~g~~gp~~~ 150 (560)
T PRK02106 88 LGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDG-GEDDYRGGDGPLSV 150 (560)
T ss_pred cCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCC-CCccccCCCCCEEE
Confidence 79999999999999999999999986 7789999999999988876531 11123455556654
No 10
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.48 E-value=1.5e-07 Score=84.02 Aligned_cols=84 Identities=32% Similarity=0.624 Sum_probs=59.4
Q ss_pred CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccc-c--ccccCCcccccceeccCCCchhHHH
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYN-V--RKVMGGTTVLNGLMYCRGDSSDYDE 76 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~-~--g~~lGGss~in~~~~~r~~~~~~d~ 76 (180)
|||||++|.|+|+|+++.|||.|.+. +..+|.|+.+.++|+++|...... . .-.+|+.+++...-. +......++
T Consensus 87 lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~-~~~~~~~~a 165 (542)
T COG2303 87 LGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP-RSPNPIARA 165 (542)
T ss_pred ccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC-CCchHHHHH
Confidence 79999999999999999999999885 669999999999998887642110 0 124666677665333 333444556
Q ss_pred HHHh-ccCCC
Q psy9925 77 YEKL-GATGW 85 (180)
Q Consensus 77 W~~~-g~~gW 85 (180)
+.++ ...|+
T Consensus 166 ~~~a~~~~G~ 175 (542)
T COG2303 166 FIEAGEQLGF 175 (542)
T ss_pred HHHHHHHcCC
Confidence 6555 33444
No 11
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.19 E-value=6.1e-07 Score=73.55 Aligned_cols=62 Identities=34% Similarity=0.655 Sum_probs=42.4
Q ss_pred CCcccccccceeccCChhhhHHHHhc-CCCCCccccccchhhhcccccccccccccCCcccccc
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEKL-GATGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNG 63 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~~-~~~~W~~~t~~~~~~~~~~~~~~~~g~~lGGss~in~ 63 (180)
|||||++|.|+++|+++.|||.|... +...|+|+.+.+++++++..... ....+|-...+..
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~-~~~~~g~~~~~~v 142 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGP-SSDLHGVDGPLPV 142 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTT-BGGGSCBSSSEEE
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccc-ccccccccccccc
Confidence 79999999999999999999999986 56679999999988777754111 1344444444444
No 12
>PLN02785 Protein HOTHEAD
Probab=97.54 E-value=3e-05 Score=70.03 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=33.0
Q ss_pred CCcccccccceeccCChhhhHHHHhcCCCCCccccccchhhhccc
Q psy9925 1 MGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYKNVLPYFLKSEH 45 (180)
Q Consensus 1 ~gG~s~~n~~~~~rg~~~d~d~w~~~~~~~W~~~t~~~~~~~~~~ 45 (180)
|||||++|+|+|+||+++|||. .+|+|+.+.++|+..++
T Consensus 131 LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~ 169 (587)
T PLN02785 131 LGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVER 169 (587)
T ss_pred ecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhc
Confidence 7999999999999999999964 57999888887755543
No 13
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=43.54 E-value=7.3 Score=35.31 Aligned_cols=50 Identities=12% Similarity=-0.032 Sum_probs=36.4
Q ss_pred cccccccCCcccccceeccCCCchhHHHHHHhccCCCC--ccchhHHHHhhhcCCC
Q psy9925 49 YNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWG--YKNVLPYFLKSEHNLQ 102 (180)
Q Consensus 49 ~~~g~~lGGss~in~~~~~r~~~~~~d~W~~~g~~gW~--~~~v~pyf~k~E~~~~ 102 (180)
..|-+.+||+|.+=+....|..+.+- .|. + .+|- ++++.|||.++|.+..
T Consensus 111 ~ar~R~vGGsS~hW~g~~~R~~p~~r-~g~--~-~dWPI~y~eL~PyY~~Ae~~~g 162 (544)
T TIGR02462 111 EAVTRGVGGMSTHWTCATPRFHREER-PKL--S-DDAAEDDAEWDRLYTKAESLIG 162 (544)
T ss_pred hheeeccCchhhhcCcccCCCCHHhc-cCC--C-CCCCCCHHHHHHHHHHHHHHhC
Confidence 35789999999998877777776421 111 2 4664 6889999999999754
No 14
>PHA00442 host recBCD nuclease inhibitor
Probab=27.21 E-value=59 Score=20.05 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=10.2
Q ss_pred ccchhHHHHhhhcC
Q psy9925 87 YKNVLPYFLKSEHN 100 (180)
Q Consensus 87 ~~~v~pyf~k~E~~ 100 (180)
|.+|..|..++|+.
T Consensus 15 wnd~q~yidsLek~ 28 (59)
T PHA00442 15 WNDMQGYIDSLEKD 28 (59)
T ss_pred HHHHHHHHHHHHHh
Confidence 45677888888863
Done!