RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9925
         (180 letters)



>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 16/168 (9%), Positives = 38/168 (22%), Gaps = 18/168 (10%)

Query: 23  YEKLGATGWGYKNVL-PYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK-- 79
             +       + NV+    +     +   V   +  T+      + R  S+   +  +  
Sbjct: 51  TVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNL 110

Query: 80  --------LGATGWGYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLP---DLGH 128
                   +G     +    P F + +  L        A        +            
Sbjct: 111 SGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDD-ADADDAEWDRLYTKAESYFQTGTD 169

Query: 129 TLLAAGRELGYPTDVDIGHGRLREGFYR---AQMTTRNGARLSAAKAT 173
               + R       +   +   R+       A   +      S+A   
Sbjct: 170 QFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTV 217



 Score = 28.8 bits (63), Expect = 0.38
 Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 10/56 (17%)

Query: 1   MGGTTVLNGLMYCRGDSSDYDEYEK----------LGATGWGYKNVLPYFLKSEHN 46
           +  T+      + R  S+   +  +          +G     +    P F + +  
Sbjct: 84  LSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRP 139


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 36/156 (23%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 31  WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKN 89
             Y  V P    +         K +GG+T++NG  + R D    D +EK  G  GW + N
Sbjct: 83  QNYLTV-PL--INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDN 139

Query: 90  VLPYFLKSEHNLQYNSSQN----------HARGGLLTVSHYNDLP---DLGHTLLAAGRE 136
           +  Y  K+E      ++Q           H   G +     ++      +   L+     
Sbjct: 140 MFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSA 199

Query: 137 LGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
           LG P   D   G  R           N  R+ AA+A
Sbjct: 200 LGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARA 235



 Score = 29.1 bits (64), Expect = 0.28
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 1   MGGTTVLNGLMYCRGDSSDYDEYEK-LGATGWGYKNVLPYFLKSEHN 46
           +GG+T++NG  + R D    D +EK  G  GW + N+  Y  K+E  
Sbjct: 104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAA 150


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 33.7 bits (76), Expect = 0.009
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 16/156 (10%)

Query: 31  WGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGW-GYKN 89
             Y+ V      +           +GG+T++NG  + R   +  D +E +       + N
Sbjct: 76  HAYETVELA--TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDN 133

Query: 90  VLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLP-------------DLGHTLLAAGRE 136
           V  Y L++E     N+ Q  A        H  +                +   L++A  +
Sbjct: 134 VAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVED 193

Query: 137 LGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKA 172
            G PT  D G G              +  R  AA+ 
Sbjct: 194 RGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAARE 229


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
           coli [TaxId: 562]}
          Length = 268

 Score = 28.8 bits (63), Expect = 0.30
 Identities = 19/74 (25%), Positives = 25/74 (33%)

Query: 86  GYKNVLPYFLKSEHNLQYNSSQNHARGGLLTVSHYNDLPDLGHTLLAAGRELGYPTDVDI 145
           GY N+LP   K   +   ++    AR   L   HY  L D     L    +      +DI
Sbjct: 32  GYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDI 91

Query: 146 GHGRLREGFYRAQM 159
           G G        A  
Sbjct: 92  GCGEGYYTHAFADA 105


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
           (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 27.9 bits (61), Expect = 0.72
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 29  TGWGYKNVLPYFLKSEHNLQYNVRKVMGGTTVLNGLMYCRGDSSDYDEYEKLGATGWGYK 88
                K  +  F+ SE  +     +V+GGT+++N  +Y R ++S Y          W   
Sbjct: 78  QEDDGKTPVERFV-SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMD 132

Query: 89  NVLPYFLKSEHNLQYNSSQNH 109
            V   +   E  + Y  +   
Sbjct: 133 LVNQTYEWVEDTIVYKPNSQS 153


>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
           [TaxId: 162425]}
          Length = 519

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 133 AGRELGYPTDVDIGHGRLREGFYRAQMTTRNGARLSAAKATDF 175
           A    G     D    R REG+YR     + G + +  +A  +
Sbjct: 346 AKEIAGTDIYFDWEAPRTREGYYR----YQGGTQCAINRAVAY 384


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 685,762
Number of extensions: 29773
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 8
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)