Query psy993
Match_columns 164
No_of_seqs 112 out of 309
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zou_A Spondin-1; beta-sandwic 100.0 2E-42 6.8E-47 263.8 14.9 134 23-163 1-144 (149)
2 3coo_A Spondin-1; reelin-N dom 100.0 5.1E-38 1.7E-42 246.1 14.1 129 26-162 15-157 (180)
3 3idu_A Uncharacterized protein 69.5 27 0.00093 24.8 10.4 76 53-151 25-102 (127)
4 2dle_A Receptor-type tyrosine- 67.3 5.7 0.0002 26.8 3.7 37 112-148 9-48 (104)
5 2dm4_A Sortilin-related recept 63.9 13 0.00045 24.0 4.9 20 121-140 22-41 (108)
6 2w1n_A O-GLCNACASE NAGJ; hexos 63.4 4.3 0.00015 32.4 2.7 19 119-137 161-179 (238)
7 2ed8_A Netrin receptor DCC; tu 57.6 11 0.00038 24.3 3.6 18 121-138 20-37 (106)
8 2djs_A Ephrin type-B receptor 49.8 11 0.00038 24.4 2.6 19 121-139 20-38 (108)
9 2ys4_A Hydrocephalus-inducing 49.5 15 0.00052 25.2 3.4 26 45-70 64-90 (122)
10 2ed7_A Netrin receptor DCC; tu 49.0 12 0.00042 24.4 2.7 20 121-140 30-49 (119)
11 2wgn_B Inhibitor of cysteine p 48.6 42 0.0014 23.9 5.7 25 56-80 38-62 (132)
12 2dbj_A Proto-oncogene tyrosine 47.3 18 0.00062 24.2 3.5 21 120-140 31-53 (124)
13 1x5l_A Ephrin type-A receptor 46.2 13 0.00044 24.0 2.5 19 120-138 22-40 (111)
14 3vmn_A Dextranase; TIM barrel, 46.2 12 0.00041 33.9 2.9 34 44-77 5-40 (643)
15 3m7o_A Lymphocyte antigen 86; 45.2 12 0.0004 28.1 2.3 77 1-80 1-83 (162)
16 3cbc_A Neutrophil gelatinase-a 44.8 48 0.0016 24.2 5.8 17 25-42 29-45 (198)
17 2dlh_A Receptor-type tyrosine- 44.8 17 0.00058 23.7 3.0 21 119-139 29-49 (121)
18 1wf5_A Sidekick 2 protein; FNI 44.3 32 0.0011 22.4 4.4 23 118-140 29-51 (121)
19 2dn7_A Receptor-type tyrosine- 43.8 15 0.00051 23.5 2.5 19 121-139 19-37 (107)
20 1wfn_A Sidekick 2; FN3, cell a 43.0 13 0.00046 24.4 2.2 20 120-139 29-48 (119)
21 2yrz_A Integrin beta-4; GP150, 42.9 33 0.0011 22.2 4.2 21 118-139 27-47 (118)
22 2edx_A Protein tyrosine phosph 41.6 26 0.00089 23.2 3.6 21 119-139 29-51 (134)
23 2edy_A Receptor-type tyrosine- 40.4 31 0.0011 21.6 3.7 19 121-139 21-41 (103)
24 2p9r_A Alpha-2-M, alpha-2-macr 39.5 22 0.00076 23.4 2.9 22 124-145 62-84 (102)
25 1v5j_A KIAA1355 protein, RSGI 39.4 16 0.00056 24.7 2.2 18 122-139 20-37 (108)
26 2ede_A Netrin receptor DCC; tu 38.5 19 0.00065 23.3 2.4 19 121-139 23-41 (114)
27 1x5h_A Neogenin; RGM binding, 38.0 33 0.0011 22.7 3.6 21 119-139 29-51 (132)
28 1wft_A 1700129L13RIK protein; 37.4 17 0.0006 25.9 2.1 27 112-140 12-38 (123)
29 1uey_A KIAA0343 protein; immun 36.7 33 0.0011 22.7 3.5 20 121-140 29-48 (127)
30 2e7h_A Ephrin type-B receptor 35.3 17 0.00059 23.6 1.7 18 122-139 21-38 (109)
31 2wnv_B C1Q chain B, complement 33.8 34 0.0012 24.1 3.2 28 56-83 98-133 (136)
32 1x5z_A Receptor-type tyrosine- 33.8 27 0.00091 22.5 2.5 17 119-135 28-44 (115)
33 1wis_A KIAA1514 protein; FNIII 33.6 30 0.001 23.1 2.8 21 120-140 29-49 (124)
34 2edb_A Netrin receptor DCC; tu 33.5 20 0.00067 23.9 1.8 17 123-139 31-47 (116)
35 1co7_I BPTI, bovine pancreatic 33.4 11 0.00038 25.6 0.5 24 1-24 2-25 (99)
36 2wnv_C C1Q chain C, complement 32.7 42 0.0014 23.4 3.6 27 56-82 96-130 (131)
37 1x5i_A Neogenin; RGM binding, 32.5 26 0.0009 23.6 2.4 17 123-139 41-57 (126)
38 3b83_A Ten-D3; beta sheet, com 32.0 40 0.0014 21.6 3.1 14 121-134 14-27 (100)
39 3ugu_A S-arrestin; arrestin fo 31.3 89 0.0031 26.4 5.8 39 45-83 210-252 (380)
40 1x5f_A Neogenin; RGM binding, 31.3 20 0.00069 23.4 1.6 18 121-138 30-48 (120)
41 1g4m_A Beta-arrestin1; sensory 30.8 93 0.0032 26.1 5.9 34 49-82 200-235 (393)
42 1wfo_A Sidekick 2; FN3, cell a 30.7 18 0.00061 24.1 1.2 19 121-139 40-58 (130)
43 2h7w_A Chagasin; beta-strands, 30.6 16 0.00056 26.2 1.0 48 18-75 8-55 (131)
44 1x4y_A Biregional cell adhesio 30.1 36 0.0012 22.2 2.7 16 119-134 19-34 (114)
45 2haz_A N-CAM 1, neural cell ad 29.9 34 0.0012 22.0 2.5 16 122-138 20-35 (105)
46 1uem_A KIAA1568 protein; immun 29.8 55 0.0019 21.0 3.6 19 121-139 28-46 (117)
47 1va9_A DOWN syndrome cell adhe 29.7 32 0.0011 22.3 2.4 20 120-139 27-48 (122)
48 2e3v_A Neural cell adhesion mo 29.5 44 0.0015 22.2 3.1 16 122-138 21-36 (122)
49 1wj3_A KIAA1496 protein; beta 28.5 34 0.0012 22.8 2.4 19 122-140 31-51 (117)
50 1suj_A CONE arrestin; sensory 28.1 1E+02 0.0035 26.1 5.7 33 51-83 199-233 (392)
51 1x5y_A Myosin binding protein 27.6 96 0.0033 19.7 4.5 17 121-137 21-37 (111)
52 1x3d_A Fibronectin type-III do 27.3 48 0.0016 21.5 2.9 19 122-140 31-49 (118)
53 1row_A SSP-19, MSP-domain prot 27.2 1.2E+02 0.0042 20.6 5.2 41 44-84 39-80 (109)
54 3n1f_C Cell adhesion molecule- 26.3 27 0.00093 22.7 1.5 15 120-134 16-30 (102)
55 2yuw_A Myosin binding protein 26.0 1.1E+02 0.0037 19.4 4.6 16 122-137 21-36 (110)
56 1x5g_A Neogenin; RGM binding, 25.6 32 0.0011 22.2 1.7 17 122-138 31-47 (116)
57 2vkw_A Neural cell adhesion mo 25.4 46 0.0016 23.8 2.7 21 119-139 120-140 (209)
58 2ic2_A CG9211-PA, GH03927P; IH 24.9 36 0.0012 22.8 1.9 20 120-139 14-33 (115)
59 4go6_B HCF C-terminal chain 1; 24.8 41 0.0014 25.2 2.5 18 122-139 100-117 (232)
60 2wnv_A C1Q chain A, complement 24.8 69 0.0024 22.3 3.5 27 56-82 97-132 (134)
61 2ka3_A Emilin-1; C1Q-like doma 24.2 69 0.0024 23.3 3.6 29 56-84 122-157 (162)
62 1k85_A Chitinase A1; fibronect 23.9 67 0.0023 19.7 3.1 14 122-135 17-30 (88)
63 3tes_A Tencon; fibronectin typ 23.6 1.5E+02 0.005 18.8 5.0 14 121-134 14-27 (98)
64 2cui_A Tenascin-X; fibronectin 23.6 77 0.0026 21.2 3.5 16 120-135 20-35 (112)
65 3t04_D Monobody 7C12; engineer 22.8 34 0.0012 22.2 1.4 17 122-138 21-37 (103)
66 2db8_A Tripartite motif protei 22.7 33 0.0011 22.5 1.4 19 121-139 23-41 (110)
67 1x5x_A Fibronectin type-III do 22.2 40 0.0014 21.6 1.7 17 121-137 20-36 (109)
68 1m1s_A WR4; structural genomic 22.1 2E+02 0.0069 19.9 5.9 40 44-83 47-87 (116)
69 2cuh_A Tenascin-X; fibronectin 21.7 1.1E+02 0.0038 19.8 4.0 16 119-134 18-33 (115)
70 2ed9_A Netrin receptor DCC; tu 21.6 43 0.0015 21.8 1.8 18 122-139 42-61 (124)
71 2ocf_D Fibronectin; estrogen r 21.5 81 0.0028 21.2 3.3 13 122-134 42-54 (121)
72 4f3j_A Complement C1Q tumor ne 21.1 1.1E+02 0.0036 21.6 4.0 28 57-84 98-135 (148)
73 2r4h_A Membrane-associated gua 20.9 58 0.002 21.6 2.4 44 32-83 1-44 (112)
74 2hzm_A RNA polymerase II media 20.4 70 0.0024 24.9 2.9 30 55-85 130-160 (212)
No 1
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=100.00 E-value=2e-42 Score=263.85 Aligned_cols=134 Identities=20% Similarity=0.364 Sum_probs=109.1
Q ss_pred CCccCccCcCCCCCCCCCCCCCCCCeEEEe--cCceeeCCCceEEEEeCCCCCceeEEEEEEeeCC-------CCceEEE
Q psy993 23 GAPEGVCADMTPKHPQTVPQDSESPYKIVL--KKKSVAPGGSISVVISSPPGLSFKGFFVQARVGD-------KPVGQFT 93 (164)
Q Consensus 23 GaP~~aC~~m~P~H~g~~pq~~~~py~i~~--~~~~y~pG~~~~VtL~~~~~~~F~GFllqAr~~~-------~~vG~F~ 93 (164)
|||.++| +|+|.|.+ ++|.+++||+|++ ++++|.||++|+|+|+++.+..|||||||||+.+ +++|+|+
T Consensus 1 gap~~aC-~~~p~~~~-~~~~~~~py~i~i~~~~~~y~pG~~~~VtL~~~~~~~F~GFllqAr~~~~~~~~~~~~vG~F~ 78 (149)
T 2zou_A 1 GSSEGYC-SRILRAQG-TRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTFQ 78 (149)
T ss_dssp -----CC-TTC--------CCSCCSEEEEETTCCSSBCTTCEEEEEEEECTTCCBSEEEEEEEETTCCSCSGGGBCSEEE
T ss_pred CCChhhh-cCCCCCCC-CCCCCCCCEEEEEecCCceEcCCCcEEEEEeccCCCceEEEEEEEEecCCccCCCCcceEEEE
Confidence 8999999 56666525 8899999999999 7899999999999999765578999999999864 4899999
Q ss_pred eCCCCCceeEec-cCCCCCCeEEeeCCCCCceEEEEEeCCCCCCccEEEEEEEeecCcEEEEccCCcceEe
Q psy993 94 KSPSSKFYKVIN-CLGGSQNAATHIDAKAKSRVTLTWVAPEDLNESVNFVATVAKDGGEYWVGQQSEPVTV 163 (164)
Q Consensus 94 ~~~~~~~~~~~~-C~~~~~~aVTH~~~~~K~~v~~~W~AP~~~~G~V~F~aTvv~~~~~fwv~~~S~~v~v 163 (164)
+.++ +.+|+++ |. |||||+|+.+|++|+|.|+||.++.|||+|||||||++++||++..+-+.++
T Consensus 79 ~~~~-~~tk~~~~C~----naVTH~~~~~K~~v~v~W~AP~~~~G~V~F~ATVvq~~~~~~~d~g~ltk~~ 144 (149)
T 2zou_A 79 IIDE-EETQFMSNCP----VAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKRIIYFQDEGSLTKKL 144 (149)
T ss_dssp ESCT-TTEEEETTEE----EEEEESSCCCBSEEEEEEECCCTTCCCEEEEEEEESSSEECCCSSSTTEEEE
T ss_pred eCCC-CccccccCCc----CccEecCCCCCcEeEEEEeCCCCCCccEEEEEEEEeccCEEEecCCcHHhhh
Confidence 9854 4579997 93 8999999999999999999999999999999999999999999987665543
No 2
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=100.00 E-value=5.1e-38 Score=246.08 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=109.8
Q ss_pred cCccCcCCC---CCCCCC-CCCCCCCeEEEec--CceeeCCCceEEEEeCCCCCceeEEEEEEeeCC-------CCceEE
Q psy993 26 EGVCADMTP---KHPQTV-PQDSESPYKIVLK--KKSVAPGGSISVVISSPPGLSFKGFFVQARVGD-------KPVGQF 92 (164)
Q Consensus 26 ~~aC~~m~P---~H~g~~-pq~~~~py~i~~~--~~~y~pG~~~~VtL~~~~~~~F~GFllqAr~~~-------~~vG~F 92 (164)
..+|. |.| .| |.+ +|.+++||+|.++ +++|.||++|+|+|+++.+..|||||||||+.+ +++|+|
T Consensus 15 ~~aC~-m~P~~~~h-g~~~~q~~~~py~I~i~~~~~~y~pG~~~~VtL~g~~~~~F~GFlLqAr~~~~~~~~~~~~vGtF 92 (180)
T 3coo_A 15 VPKSE-GYCSRILR-AQGTRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIALRENREGDKEEDHAGTF 92 (180)
T ss_dssp --CCC-CTTTTEEE-CCCC----CTTEEEEETTCCSEECTTCEEEEEEEECTTCCBSCCEEEEEETTCCSSSGGGBCSEE
T ss_pred ccCCC-CcCCcCcC-CCCCCCCCCCCEEEEEcCCCceecCCCcEEEEEeccCCCceeEEEEEEEcCCCCccCCCCceeEE
Confidence 34696 999 56 776 8899999999998 999999999999999765578999999999864 489999
Q ss_pred EeCCCCCceeEec-cCCCCCCeEEeeCCCCCceEEEEEeCCCCCCccEEEEEEEeecCcEEEEccCCcceE
Q psy993 93 TKSPSSKFYKVIN-CLGGSQNAATHIDAKAKSRVTLTWVAPEDLNESVNFVATVAKDGGEYWVGQQSEPVT 162 (164)
Q Consensus 93 ~~~~~~~~~~~~~-C~~~~~~aVTH~~~~~K~~v~~~W~AP~~~~G~V~F~aTvv~~~~~fwv~~~S~~v~ 162 (164)
++.++ ..+|+++ |. |||||+|+.+|++|+|.|+||.+++|||+|||||||++++ |++.++..++
T Consensus 93 ~~~~~-~~tk~~~~C~----naVTHtn~~~K~~V~v~W~AP~~~~G~V~FrATVvq~~~v-W~~~~g~Ltk 157 (180)
T 3coo_A 93 QIIDE-EETQFMSNCP----VAVTESTPRRRTRIQVFWIAPPAGTGCVILKASIVQKRII-YFQDEGSLTK 157 (180)
T ss_dssp ECSCT-TTEEEETTEE----EEEEESSCCCBSEEEEEEECCCTTCCCEEEEEECCCSSSE-EECSSSTTEE
T ss_pred EecCC-ccccccccCc----CccEecCCCCCceeEEEEeCCCCCCccEEEEEEEEeCCCE-EEecCCchhh
Confidence 98854 4579997 93 8999999999999999999999999999999999999999 9998887654
No 3
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=69.52 E-value=27 Score=24.75 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=47.4
Q ss_pred cCceeeCCCceEEEEe--CCCCCceeEEEEEEeeCCCCceEEEeCCCCCceeEeccCCCCCCeEEeeCCCCCceEEEEEe
Q psy993 53 KKKSVAPGGSISVVIS--SPPGLSFKGFFVQARVGDKPVGQFTKSPSSKFYKVINCLGGSQNAATHIDAKAKSRVTLTWV 130 (164)
Q Consensus 53 ~~~~y~pG~~~~VtL~--~~~~~~F~GFllqAr~~~~~vG~F~~~~~~~~~~~~~C~~~~~~aVTH~~~~~K~~v~~~W~ 130 (164)
.++...+|+.+++++. +.+...=.+|-+.-...++.+++. .+. -.......++|.|+
T Consensus 25 ~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~--------------------~v~-La~G~s~tv~f~~~ 83 (127)
T 3idu_A 25 GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNW--------------------TVS-LGPKEEKVLTFNWT 83 (127)
T ss_dssp SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEE--------------------EEE-ECTTCEEEEEEEEC
T ss_pred CCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeE--------------------Eec-cCCCCeEEEEEEEE
Confidence 4788899999876665 333345566666655443333222 111 22334457999998
Q ss_pred CCCCCCccEEEEEEEeecCcE
Q psy993 131 APEDLNESVNFVATVAKDGGE 151 (164)
Q Consensus 131 AP~~~~G~V~F~aTvv~~~~~ 151 (164)
+ . ..|.+.++|.|-.+..+
T Consensus 84 ~-~-~~G~~~v~AvVD~~n~I 102 (127)
T 3idu_A 84 P-T-QEGMYRINATVDEENTV 102 (127)
T ss_dssp C-S-SCEEEEEEEEESTTCCS
T ss_pred c-C-CCcEEEEEEEEcCCCcE
Confidence 4 3 38999999998776654
No 4
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=67.33 E-value=5.7 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=23.1
Q ss_pred CeEEe--eCCCCCceEEEEEeCCCCCCccE-EEEEEEeec
Q psy993 112 NAATH--IDAKAKSRVTLTWVAPEDLNESV-NFVATVAKD 148 (164)
Q Consensus 112 ~aVTH--~~~~~K~~v~~~W~AP~~~~G~V-~F~aTvv~~ 148 (164)
++|.+ ..+.....+++.|.+|.+..+.| .++..+...
T Consensus 9 s~v~~l~v~~~t~~Sv~LsW~~p~~~~~~i~~Y~v~~~~~ 48 (104)
T 2dle_A 9 IQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGE 48 (104)
T ss_dssp CBEEEEEEEEECSSCEEEEEEESCSTTCCSCEEEEEEECS
T ss_pred CCCceEEEEEeecCEEEEEEcCCCCCCCceEEEEEEEECC
Confidence 45553 33445568999999998776653 355554443
No 5
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=63.86 E-value=13 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.7
Q ss_pred CCceEEEEEeCCCCCCccEE
Q psy993 121 AKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V~ 140 (164)
.+..+.+.|.+|.+..|.|.
T Consensus 22 ~~~sv~l~W~~p~~~~g~i~ 41 (108)
T 2dm4_A 22 AEGVIVGHWAPPIHTHGLIR 41 (108)
T ss_dssp CSSCEEEEEECCSCCSSCEE
T ss_pred CCCEEEEEEcCCCCCCCcEE
Confidence 55689999999987667554
No 6
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}
Probab=63.43 E-value=4.3 Score=32.36 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.9
Q ss_pred CCCCceEEEEEeCCCCCCc
Q psy993 119 AKAKSRVTLTWVAPEDLNE 137 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~~~G 137 (164)
...+++|++.|.||.+..|
T Consensus 161 ~VT~tSVtLsW~aP~~~~G 179 (238)
T 2w1n_A 161 EINKKNVTVTWTEPETTEG 179 (238)
T ss_dssp EECSSCEEEEEECCSCCTT
T ss_pred EccCCeEEEEecCCCCCCC
Confidence 4456789999999999777
No 7
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.65 E-value=11 Score=24.27 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=13.7
Q ss_pred CCceEEEEEeCCCCCCcc
Q psy993 121 AKSRVTLTWVAPEDLNES 138 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~ 138 (164)
..+.+.+.|.+|....|.
T Consensus 20 ~~~si~l~W~~p~~~~g~ 37 (106)
T 2ed8_A 20 SPTSILITWEPPAYANGP 37 (106)
T ss_dssp STTEEEEEEECCSSCSSC
T ss_pred CCCEEEEEECCCCCCCCC
Confidence 456899999999765554
No 8
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=49.75 E-value=11 Score=24.37 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=15.0
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
..+.|.+.|.+|....|.|
T Consensus 20 ~~~sv~l~W~~p~~~~g~i 38 (108)
T 2djs_A 20 TMRSITLSWPQPEQPNGII 38 (108)
T ss_dssp CSSEEEEECCCCSCCSSCE
T ss_pred CCCEEEEEECCCCCCCCeE
Confidence 3457999999998777765
No 9
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.54 E-value=15 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCCeEEEecCceeeCCCceEEEEe-CC
Q psy993 45 ESPYKIVLKKKSVAPGGSISVVIS-SP 70 (164)
Q Consensus 45 ~~py~i~~~~~~y~pG~~~~VtL~-~~ 70 (164)
++||+|..+.....||+..+|+++ .+
T Consensus 64 ~~~F~i~P~~g~L~pg~~~~i~V~F~P 90 (122)
T 2ys4_A 64 CRPFSIEPAIGTLNVGESMQLEVEFEP 90 (122)
T ss_dssp CTTEEEESSEEEECTTCEEEEEEEECC
T ss_pred CCCeEEECCcCEECCCCEEEEEEEEEc
Confidence 568999988888899999999998 54
No 10
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.99 E-value=12 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=15.4
Q ss_pred CCceEEEEEeCCCCCCccEE
Q psy993 121 AKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V~ 140 (164)
..+.+.+.|.+|.+..|.|.
T Consensus 30 ~~~sv~l~W~~p~~~~~~i~ 49 (119)
T 2ed7_A 30 SSRFVRLSWRPPAEAKGNIQ 49 (119)
T ss_dssp CSSCEEEECCCCSCCSSCEE
T ss_pred CCCEEEEEEeCCCCCCCcEE
Confidence 45579999999987666554
No 11
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=48.57 E-value=42 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=17.6
Q ss_pred eeeCCCceEEEEeCCCCCceeEEEE
Q psy993 56 SVAPGGSISVVISSPPGLSFKGFFV 80 (164)
Q Consensus 56 ~y~pG~~~~VtL~~~~~~~F~GFll 80 (164)
..+.|+.++|+|.++++..|+.-+-
T Consensus 38 ~v~~Ge~~~I~L~~NPTTGY~W~~~ 62 (132)
T 2wgn_B 38 KLTQGQELVLTLPSNPTTGFRWELR 62 (132)
T ss_dssp EECTTCEEEEEECCCTTTSCEEEEE
T ss_pred EEcCCCEEEEEeCCCCCCCeEEEEe
Confidence 4567999999999665555555443
No 12
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=18 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=15.4
Q ss_pred CCCceEEEEEeCC--CCCCccEE
Q psy993 120 KAKSRVTLTWVAP--EDLNESVN 140 (164)
Q Consensus 120 ~~K~~v~~~W~AP--~~~~G~V~ 140 (164)
...+.|.+.|.+| ....|.|.
T Consensus 31 ~s~~sv~l~W~pp~~~~~~g~i~ 53 (124)
T 2dbj_A 31 ESSDNVDIRWMKPPTKQQDGELV 53 (124)
T ss_dssp SSSSEEEEEEECCSCCSTTCCEE
T ss_pred CCCCEEEEEEcCCCcccCCCeEe
Confidence 4567899999999 55566544
No 13
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=46.22 E-value=13 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=14.7
Q ss_pred CCCceEEEEEeCCCCCCcc
Q psy993 120 KAKSRVTLTWVAPEDLNES 138 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~~~G~ 138 (164)
...+.+.+.|.+|....|.
T Consensus 22 ~~~~sv~l~W~~p~~~~g~ 40 (111)
T 1x5l_A 22 AGQTSVSLLWQEPEQPNGI 40 (111)
T ss_dssp BCSSCEEEEECCCSCCCSC
T ss_pred cCCCEEEEEECCCCCCCCE
Confidence 4456899999999876665
No 14
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=46.19 E-value=12 Score=33.93 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=24.9
Q ss_pred CCCCeEEEecCceeeCCCceEEEEe--CCCCCceeE
Q psy993 44 SESPYKIVLKKKSVAPGGSISVVIS--SPPGLSFKG 77 (164)
Q Consensus 44 ~~~py~i~~~~~~y~pG~~~~VtL~--~~~~~~F~G 77 (164)
+..=+.+..++..|.||+.|+++|+ +..+..+.|
T Consensus 5 ~~~i~~v~tDKA~Y~PGe~V~l~~~l~n~t~~~~~g 40 (643)
T 3vmn_A 5 NGNMINLTTDKAVYQAGEAVHLNLTLNNTTSLAQNI 40 (643)
T ss_dssp CCCSCCCEESCSSBCTTSCEEEECEEECCSSSCEEE
T ss_pred CccceeeeccccccCCCCeEEEEEEEecccCcccee
Confidence 3344678899999999999998887 443444544
No 15
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*
Probab=45.18 E-value=12 Score=28.13 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHhhcceecCCCCc----cCccCcCCC--CCCCCCCCCCCCCeEEEecCceeeCCCceEEEEeCCCCCc
Q psy993 1 MNQFLLLCVSAVAISSVHAFSSGAP----EGVCADMTP--KHPQTVPQDSESPYKIVLKKKSVAPGGSISVVISSPPGLS 74 (164)
Q Consensus 1 m~~~~~~~~~~~~~~~~~a~p~GaP----~~aC~~m~P--~H~g~~pq~~~~py~i~~~~~~y~pG~~~~VtL~~~~~~~ 74 (164)
|+.|..+++++.|+..-.+=-.|.. ..+|.+--- ......+.. ||.|.+++-.-.+|+..++++..-..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~h~~C~s~~~~v~Y~~CD~~q---~~~vsi~PC~~~~G~nl~i~a~~Ilr~d 77 (162)
T 3m7o_A 1 MNGVAAALLVWILTSPSSSDHGSENGWPKHTACNSGGLEVVYQSCDPLQ---DFGLSIDQCSKQIQSNLNIRFGIILRQD 77 (162)
T ss_dssp -------------------------CCCCEEEEEETTEEEEEEECCTTC---CCEEEESSCCSEECSSCEEEEEEECSSC
T ss_pred CchHHHHHHhhheeccCccCCCCcCcCceeeeEcCCCcEEEEEeCCCCC---CceEECCCCCCCCCCcEEEEEEEEEccc
Confidence 7778777777666554311111212 124543100 000112332 5999999888889999999988533345
Q ss_pred eeEEEE
Q psy993 75 FKGFFV 80 (164)
Q Consensus 75 F~GFll 80 (164)
.++..+
T Consensus 78 I~~ly~ 83 (162)
T 3m7o_A 78 IRKLFL 83 (162)
T ss_dssp CSEEEE
T ss_pred ceeeEE
Confidence 666555
No 16
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=44.81 E-value=48 Score=24.18 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=9.5
Q ss_pred ccCccCcCCCCCCCCCCC
Q psy993 25 PEGVCADMTPKHPQTVPQ 42 (164)
Q Consensus 25 P~~aC~~m~P~H~g~~pq 42 (164)
|...|.+..|.. +...+
T Consensus 29 p~~~~~~v~~~~-~fd~~ 45 (198)
T 3cbc_A 29 PAPPLSKVPLQQ-NFQDN 45 (198)
T ss_dssp CCCCGGGSCCCT-TCCTT
T ss_pred CCCCcccCCcCC-CCChH
Confidence 345777766655 44433
No 17
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.78 E-value=17 Score=23.69 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCCCceEEEEEeCCCCCCccE
Q psy993 119 AKAKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~~~G~V 139 (164)
....+.+.+.|.+|....|.|
T Consensus 29 ~~~~~sv~l~W~~p~~~~g~i 49 (121)
T 2dlh_A 29 MLSSTTILVQWKEPEEPNGQI 49 (121)
T ss_dssp CCSSSBCCEEEECCSCCCSCE
T ss_pred ecCCCEEEEEECCCCCCCCcE
Confidence 335568999999998766764
No 18
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=44.30 E-value=32 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=16.2
Q ss_pred CCCCCceEEEEEeCCCCCCccEE
Q psy993 118 DAKAKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 118 ~~~~K~~v~~~W~AP~~~~G~V~ 140 (164)
.....+.+.+.|.+|.+..+.|.
T Consensus 29 ~~~~~~sv~l~W~~p~~~~~~i~ 51 (121)
T 1wf5_A 29 STVERRAINLTWTKPFDGNSPLI 51 (121)
T ss_dssp CSSSTTEEEEECCCCCCCSSCEE
T ss_pred EeccCCEEEEEEcCCCCCCCcce
Confidence 33455689999999966555555
No 19
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=43.81 E-value=15 Score=23.52 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=14.6
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
.++.+.+.|.+|.+..|.|
T Consensus 19 ~~~sv~l~W~~p~~~~g~i 37 (107)
T 2dn7_A 19 AMNTALLQWHPPKELPGEL 37 (107)
T ss_dssp STTEEEEEEECCSSCSSCC
T ss_pred CCCEEEEEECCCCCCCCce
Confidence 5568999999998666643
No 20
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=43.01 E-value=13 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=15.6
Q ss_pred CCCceEEEEEeCCCCCCccE
Q psy993 120 KAKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~~~G~V 139 (164)
...+.+.+.|.+|....|.|
T Consensus 29 ~~~~sv~l~W~~p~~~~g~i 48 (119)
T 1wfn_A 29 ILDTSLKVSWQEPGEKNGIL 48 (119)
T ss_dssp CCSSEEEEECCCCTTCCSCC
T ss_pred CCCCEEEEEEcCCCCCCCcE
Confidence 34568999999998766764
No 21
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.94 E-value=33 Score=22.23 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCCCCceEEEEEeCCCCCCccE
Q psy993 118 DAKAKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 118 ~~~~K~~v~~~W~AP~~~~G~V 139 (164)
.....+.+.+.|.+|... |.|
T Consensus 27 ~~~~~~sv~l~W~~p~~~-g~i 47 (118)
T 2yrz_A 27 SALGPTSLRVSWQEPRCE-RPL 47 (118)
T ss_dssp CCCBTTEEEEECCCCCCS-SCE
T ss_pred EeCCCCEEEEEeCCCCCC-CCc
Confidence 334556899999999875 643
No 22
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.60 E-value=26 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=15.1
Q ss_pred CCCCceEEEEEeCC--CCCCccE
Q psy993 119 AKAKSRVTLTWVAP--EDLNESV 139 (164)
Q Consensus 119 ~~~K~~v~~~W~AP--~~~~G~V 139 (164)
....+.+.+.|.+| ....|.|
T Consensus 29 ~~~~~sv~l~W~~p~~~~~~g~i 51 (134)
T 2edx_A 29 SMGSTTVRVSWVPPPADSRNGVI 51 (134)
T ss_dssp CSSSSEEEEEEECCCSTTCSSCE
T ss_pred eCCCCEEEEEecCCCccCCCCce
Confidence 34456899999999 5556655
No 23
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.40 E-value=31 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=13.1
Q ss_pred CCceEEEEEeCCC--CCCccE
Q psy993 121 AKSRVTLTWVAPE--DLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~--~~~G~V 139 (164)
..+.+.+.|.+|. ...|.|
T Consensus 21 ~~~si~l~W~~p~~~~~~g~i 41 (103)
T 2edy_A 21 TTSTTELAWDPPVLAERNGRI 41 (103)
T ss_dssp CSSCEECEEECCCTTSCSSCC
T ss_pred CCCEEEEEECCCCCcCCCCcE
Confidence 4457999999993 444543
No 24
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=39.51 E-value=22 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=15.8
Q ss_pred eEEEEEeCCCCC-CccEEEEEEE
Q psy993 124 RVTLTWVAPEDL-NESVNFVATV 145 (164)
Q Consensus 124 ~v~~~W~AP~~~-~G~V~F~aTv 145 (164)
..+..+.-|++. .|.-.+++..
T Consensus 62 ~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 62 LKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp EEEEEEECCSSCCCEEEEEEEEC
T ss_pred EEEEEEECCCCCCCeeEEEEEEE
Confidence 567788887774 5877777764
No 25
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.37 E-value=16 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.5
Q ss_pred CceEEEEEeCCCCCCccE
Q psy993 122 KSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~V 139 (164)
++.+.+.|++|.+..|.|
T Consensus 20 ~~sv~L~W~pP~~~~~~I 37 (108)
T 1v5j_A 20 PRGVLLHWDPPELVPKRL 37 (108)
T ss_dssp SSSEEEEEECCSCCSSCC
T ss_pred CCEEEEEECCCCCCCCCC
Confidence 357999999999755443
No 26
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.51 E-value=19 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=14.7
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
..+.+.+.|.+|....|.|
T Consensus 23 ~~~sv~l~W~~p~~~~g~i 41 (114)
T 2ede_A 23 KPRAVIVSWQPPLEANGKI 41 (114)
T ss_dssp CSSCEEEEEECCSSCSSCC
T ss_pred CCCEEEEEECCCCCCCCce
Confidence 4468999999998766644
No 27
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=38.02 E-value=33 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCCCceEEEEEeCCCC--CCccE
Q psy993 119 AKAKSRVTLTWVAPED--LNESV 139 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~--~~G~V 139 (164)
....+.+.+.|.+|.. ..|.|
T Consensus 29 ~~~~~sv~l~W~~p~~~~~~g~i 51 (132)
T 1x5h_A 29 VRNSKSIMIHWQPPAPATQNGQI 51 (132)
T ss_dssp CCSSSEEEEEEECCCTTTCCSCE
T ss_pred eCCCCEEEEEEeCCCCcCCCceE
Confidence 4455689999999987 45654
No 28
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=37.40 E-value=17 Score=25.88 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=19.0
Q ss_pred CeEEeeCCCCCceEEEEEeCCCCCCccEE
Q psy993 112 NAATHIDAKAKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 112 ~aVTH~~~~~K~~v~~~W~AP~~~~G~V~ 140 (164)
++|.=+.+ ..-+++.|++|...+|+|.
T Consensus 12 s~ikIsK~--~dgahLsWePP~~~sG~I~ 38 (123)
T 1wft_A 12 STVRISKN--VDGIHLSWEPPTSPSGNIL 38 (123)
T ss_dssp EEEEEEEC--SSEEEEEEECCSSCCSSCC
T ss_pred cceEEeeC--CCceEEeecCCCCCCcccE
Confidence 44443332 3469999999999999873
No 29
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=36.67 E-value=33 Score=22.70 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=14.7
Q ss_pred CCceEEEEEeCCCCCCccEE
Q psy993 121 AKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V~ 140 (164)
..+.+.+.|.+|.+..+.|.
T Consensus 29 ~~~sv~l~W~p~~~~~~~i~ 48 (127)
T 1uey_A 29 LDKSVQLSWTPGDDNNSPIT 48 (127)
T ss_dssp SSSCEEEEEECCCCCSSCEE
T ss_pred cCCEEEEEEECCCCCCCCce
Confidence 45689999999876555554
No 30
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.26 E-value=17 Score=23.59 Aligned_cols=18 Identities=28% Similarity=0.624 Sum_probs=14.0
Q ss_pred CceEEEEEeCCCCCCccE
Q psy993 122 KSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~V 139 (164)
.+.|.+.|.+|....|.|
T Consensus 21 ~~sv~l~W~~p~~~~g~i 38 (109)
T 2e7h_A 21 PSSLSLAWAVPRAPSGAV 38 (109)
T ss_dssp TTEEEEECCCCCCSSSCC
T ss_pred CCEEEEEeCCCCCCCCcE
Confidence 458999999998666643
No 31
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=33.82 E-value=34 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=20.5
Q ss_pred eeeCCCceEEEEe-CC-------CCCceeEEEEEEe
Q psy993 56 SVAPGGSISVVIS-SP-------PGLSFKGFFVQAR 83 (164)
Q Consensus 56 ~y~pG~~~~VtL~-~~-------~~~~F~GFllqAr 83 (164)
..+.||+|-|.|. +. ....|-||||...
T Consensus 98 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~~~ 133 (136)
T 2wnv_B 98 KLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPD 133 (136)
T ss_dssp EECTTCEEEEEEEEEECCBCBTTBCCEEEEEEEEEC
T ss_pred EECCCCEEEEEEeCCceEEcCCCCCEEEEEEEeccc
Confidence 4668999888886 21 2467999999864
No 32
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=33.79 E-value=27 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=13.0
Q ss_pred CCCCceEEEEEeCCCCC
Q psy993 119 AKAKSRVTLTWVAPEDL 135 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~~ 135 (164)
....+.+.+.|.+|.+.
T Consensus 28 ~~~~~sv~l~W~~p~~~ 44 (115)
T 1x5z_A 28 PESETSILLSWTPPRSD 44 (115)
T ss_dssp CSSSSEEEEEEECCSCC
T ss_pred eCCCCEEEEEEcCCCCC
Confidence 34456899999999763
No 33
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=33.56 E-value=30 Score=23.08 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCceEEEEEeCCCCCCccEE
Q psy993 120 KAKSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~~~G~V~ 140 (164)
...+.+++.|.+|.+..+.|.
T Consensus 29 ~~~~sv~l~W~p~~~~~~~i~ 49 (124)
T 1wis_A 29 IGPRSVTLQFRPGYDGKTSIS 49 (124)
T ss_dssp CCSSCEEEEEECCCCCSSCCS
T ss_pred ecCCEEEEEEECCCCCCCccc
Confidence 345689999999987655543
No 34
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.50 E-value=20 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=13.6
Q ss_pred ceEEEEEeCCCCCCccE
Q psy993 123 SRVTLTWVAPEDLNESV 139 (164)
Q Consensus 123 ~~v~~~W~AP~~~~G~V 139 (164)
+.+.+.|.+|....|.|
T Consensus 31 ~sv~l~W~~P~~~ng~i 47 (116)
T 2edb_A 31 NCIIMSWTPPLNPNIVV 47 (116)
T ss_dssp SCEEEEECCCSCTTBCC
T ss_pred CEEEEEEcCCCCCCCce
Confidence 68999999998765643
No 35
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=33.39 E-value=11 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhhcceecCCCC
Q psy993 1 MNQFLLLCVSAVAISSVHAFSSGA 24 (164)
Q Consensus 1 m~~~~~~~~~~~~~~~~~a~p~Ga 24 (164)
|.++.+..++++|+....+...|.
T Consensus 2 m~~~~ls~~lllll~~l~~~~~~~ 25 (99)
T 1co7_I 2 MSRLCLSVALLVLLGTLAASTPGC 25 (99)
T ss_dssp ------------------------
T ss_pred cchHHHHHHHHHHHHHHHHhcccc
Confidence 777766666666665555555553
No 36
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=32.66 E-value=42 Score=23.42 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=18.6
Q ss_pred eeeCCCceEEEEe-CC-------CCCceeEEEEEE
Q psy993 56 SVAPGGSISVVIS-SP-------PGLSFKGFFVQA 82 (164)
Q Consensus 56 ~y~pG~~~~VtL~-~~-------~~~~F~GFllqA 82 (164)
..+.||+|-|.|. +. ....|-||||..
T Consensus 96 ~L~~GD~V~v~~~~~~~~~~~~~~~stFsGfLl~~ 130 (131)
T 2wnv_C 96 RLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFP 130 (131)
T ss_dssp EECTTCEEEEEEEEEECCCCCTTCCCEEEEEEEEE
T ss_pred EECCCCEEEEEEeCCceEecCCCCCEEEEEEEEeC
Confidence 3567888888876 21 246789998864
No 37
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.50 E-value=26 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.735 Sum_probs=13.8
Q ss_pred ceEEEEEeCCCCCCccE
Q psy993 123 SRVTLTWVAPEDLNESV 139 (164)
Q Consensus 123 ~~v~~~W~AP~~~~G~V 139 (164)
+.+.+.|.+|....|.|
T Consensus 41 ~sv~l~W~~P~~~~g~i 57 (126)
T 1x5i_A 41 TSIVVSWTPPENQNIVV 57 (126)
T ss_dssp TEEEEEEECCSCTTBCC
T ss_pred CEEEEEEcCCCCCCCCE
Confidence 68999999998766654
No 38
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=31.97 E-value=40 Score=21.61 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.3
Q ss_pred CCceEEEEEeCCCC
Q psy993 121 AKSRVTLTWVAPED 134 (164)
Q Consensus 121 ~K~~v~~~W~AP~~ 134 (164)
..+.+.+.|.+|..
T Consensus 14 ~~~sv~lsW~pP~~ 27 (100)
T 3b83_A 14 TLTTAVVTWQPPIL 27 (100)
T ss_dssp CSSCEEEEEECCSS
T ss_pred cCCEEEEEEcCCcc
Confidence 34679999999975
No 39
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=31.30 E-value=89 Score=26.43 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=25.8
Q ss_pred CCCeEEE--ecCceeeCCCceEEEEe--CCCCCceeEEEEEEe
Q psy993 45 ESPYKIV--LKKKSVAPGGSISVVIS--SPPGLSFKGFFVQAR 83 (164)
Q Consensus 45 ~~py~i~--~~~~~y~pG~~~~VtL~--~~~~~~F~GFllqAr 83 (164)
++|-.+. .+++.|.|||.|.|++. +.+....+..-+..+
T Consensus 210 sGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~ 252 (380)
T 3ugu_A 210 DKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVE 252 (380)
T ss_dssp CCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEE
Confidence 4455444 46889999999988776 444466676544443
No 40
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=31.28 E-value=20 Score=23.39 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=13.8
Q ss_pred CCceEEEEEeCCC-CCCcc
Q psy993 121 AKSRVTLTWVAPE-DLNES 138 (164)
Q Consensus 121 ~K~~v~~~W~AP~-~~~G~ 138 (164)
..+.+.+.|.+|. +..|.
T Consensus 30 ~~~sv~l~W~~p~~~~~g~ 48 (120)
T 1x5f_A 30 STRFIKLTWRTPASDPHGD 48 (120)
T ss_dssp CSSCEEEEEECCSSCSSCC
T ss_pred CCCEEEEEECCCCCCCCCc
Confidence 4557999999998 65564
No 41
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=30.80 E-value=93 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.3
Q ss_pred EEEecCceeeCCCceEEEEe--CCCCCceeEEEEEE
Q psy993 49 KIVLKKKSVAPGGSISVVIS--SPPGLSFKGFFVQA 82 (164)
Q Consensus 49 ~i~~~~~~y~pG~~~~VtL~--~~~~~~F~GFllqA 82 (164)
++..++..|.|||.+.|++. +.+...-+++-+.-
T Consensus 200 ~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L 235 (393)
T 1g4m_A 200 EASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISV 235 (393)
T ss_dssp EEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEE
T ss_pred EEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEE
Confidence 44567899999999888776 44445566654443
No 42
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=30.65 E-value=18 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=14.9
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
..+.+.+.|.+|....|.|
T Consensus 40 ~~~sv~l~W~~p~~~~g~i 58 (130)
T 1wfo_A 40 RTTSVRLIWQPPAAPNGII 58 (130)
T ss_dssp CSSEEEEECCCCSCCCSCC
T ss_pred CCCEEEEEEcCCCCCCCce
Confidence 4568999999998766654
No 43
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=30.59 E-value=16 Score=26.16 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=17.5
Q ss_pred eecCCCCccCccCcCCCCCCCCCCCCCCCCeEEEecCceeeCCCceEEEEeCCCCCce
Q psy993 18 HAFSSGAPEGVCADMTPKHPQTVPQDSESPYKIVLKKKSVAPGGSISVVISSPPGLSF 75 (164)
Q Consensus 18 ~a~p~GaP~~aC~~m~P~H~g~~pq~~~~py~i~~~~~~y~pG~~~~VtL~~~~~~~F 75 (164)
+-+++|.-..||..|. | ...- .++.-.| ..+.|+.+.|.|.++++..|
T Consensus 8 ~~~~~~~~~~~~~~~~--~-~lt~--~dn~~~I-----~v~~Ge~~~I~L~~NPTTGY 55 (131)
T 2h7w_A 8 HHHSSGENLYFQGHMS--H-KVTK--AHNGATL-----TVAVGELVEIQLPSNPTTGF 55 (131)
T ss_dssp ------------------C-EECG--GGTTCEE-----EECTTCEEEEEEEECGGGSC
T ss_pred ccccCCCceEEeccCC--c-eech--hhCCCEE-----EEeCCCEEEEEeCCCCCCCe
Confidence 3567888899999984 4 2211 2333344 35579999999995433333
No 44
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=30.08 E-value=36 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=12.3
Q ss_pred CCCCceEEEEEeCCCC
Q psy993 119 AKAKSRVTLTWVAPED 134 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~ 134 (164)
....+.|.+.|.+|..
T Consensus 19 ~~~~~si~l~W~~p~~ 34 (114)
T 1x4y_A 19 AVNETTIMLKWMYIPA 34 (114)
T ss_dssp CSSSSCEEEEEECCCT
T ss_pred ecCCCEEEEEEeCCCc
Confidence 3456689999999963
No 45
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=29.94 E-value=34 Score=22.00 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=12.6
Q ss_pred CceEEEEEeCCCCCCcc
Q psy993 122 KSRVTLTWVAPEDLNES 138 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~ 138 (164)
++ +.+.|.+|....|.
T Consensus 20 ~~-v~l~W~~P~~~~G~ 35 (105)
T 2haz_A 20 ST-AQVQFDEPEATGGV 35 (105)
T ss_dssp SC-EEEEEECCSCCTTS
T ss_pred Cc-EEEEEcCCcccCCc
Confidence 44 99999999766665
No 46
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=29.85 E-value=55 Score=21.02 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=13.6
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
.++.+++.|.+|.+..+.|
T Consensus 28 ~~~sv~l~W~~p~~~~~~i 46 (117)
T 1uem_A 28 TKNSVTLSWQPGTPGTLPA 46 (117)
T ss_dssp CSSCEEEECCCCBCSSSCC
T ss_pred cCCEEEEEEeCCCCCCcCc
Confidence 3457999999998644444
No 47
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=29.73 E-value=32 Score=22.30 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=14.5
Q ss_pred CCCceEEEEEeCCCC--CCccE
Q psy993 120 KAKSRVTLTWVAPED--LNESV 139 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~--~~G~V 139 (164)
.....+.+.|.+|.. ..|.|
T Consensus 27 ~~~~sv~l~W~~p~~~~~~g~i 48 (122)
T 1va9_A 27 VTSQSIQVTWKAPKKELQNGVI 48 (122)
T ss_dssp CSSSEEEEEEECCCSSTTCSCC
T ss_pred ccCCEEEEEEeCCCCcCCCCcE
Confidence 345689999999986 34543
No 48
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}
Probab=29.46 E-value=44 Score=22.22 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=11.3
Q ss_pred CceEEEEEeCCCCCCcc
Q psy993 122 KSRVTLTWVAPEDLNES 138 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~ 138 (164)
.+ +.+.|.+|....|.
T Consensus 21 ~t-v~l~W~~P~~~~G~ 36 (122)
T 2e3v_A 21 ST-AQVQFDEPEATGGV 36 (122)
T ss_dssp SC-EEEEEECCCCC--C
T ss_pred Cc-EEEEECCCCcCCCC
Confidence 44 99999999765665
No 49
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=28.52 E-value=34 Score=22.83 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=13.7
Q ss_pred CceEEEEEeCCC--CCCccEE
Q psy993 122 KSRVTLTWVAPE--DLNESVN 140 (164)
Q Consensus 122 K~~v~~~W~AP~--~~~G~V~ 140 (164)
.+.|.+.|.+|. ...|.|.
T Consensus 31 ~~si~l~W~~p~~~~~ng~i~ 51 (117)
T 1wj3_A 31 DTKVLLNWEQVKAMENESEVT 51 (117)
T ss_dssp TTEEEEECCCCCCCSSSCCEE
T ss_pred CCEEEEEEcCCCccccCCcee
Confidence 357999999994 4566554
No 50
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=28.06 E-value=1e+02 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=22.4
Q ss_pred EecCceeeCCCceEEEEe--CCCCCceeEEEEEEe
Q psy993 51 VLKKKSVAPGGSISVVIS--SPPGLSFKGFFVQAR 83 (164)
Q Consensus 51 ~~~~~~y~pG~~~~VtL~--~~~~~~F~GFllqAr 83 (164)
..++..|.|||.|.|++. +.+...-+..-++.+
T Consensus 199 sLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~ 233 (392)
T 1suj_A 199 SLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVE 233 (392)
T ss_dssp EESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEE
T ss_pred EeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEE
Confidence 456899999999887776 444456666544433
No 51
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Probab=27.57 E-value=96 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=12.7
Q ss_pred CCceEEEEEeCCCCCCc
Q psy993 121 AKSRVTLTWVAPEDLNE 137 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G 137 (164)
.++.+++.|.+|.+..|
T Consensus 21 ~~~sv~l~W~~p~~~~~ 37 (111)
T 1x5y_A 21 TDTTTTLKWRPPDRIGA 37 (111)
T ss_dssp CSSEEEEEEECCSCCCS
T ss_pred cCCEEEEEECCCCcCCC
Confidence 34589999999986444
No 52
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=27.28 E-value=48 Score=21.47 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=14.0
Q ss_pred CceEEEEEeCCCCCCccEE
Q psy993 122 KSRVTLTWVAPEDLNESVN 140 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~V~ 140 (164)
.+.+++.|.+|.+..+.|.
T Consensus 31 ~~sv~l~W~~p~~~~~~i~ 49 (118)
T 1x3d_A 31 KNSLTLQWKAPSDNGSKIQ 49 (118)
T ss_dssp TTEEEEECCCCCCCSSCEE
T ss_pred CCEEEEEECCCCCCCCcce
Confidence 4589999999986545543
No 53
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=27.24 E-value=1.2e+02 Score=20.57 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCCCeEEEecCceeeCCCceEEEEe-CCCCCceeEEEEEEee
Q psy993 44 SESPYKIVLKKKSVAPGGSISVVIS-SPPGLSFKGFFVQARV 84 (164)
Q Consensus 44 ~~~py~i~~~~~~y~pG~~~~VtL~-~~~~~~F~GFllqAr~ 84 (164)
++.-|++...-..+.||+++.|.|. .+....=.=|++|.-.
T Consensus 39 ~p~~y~VrP~~G~I~P~~~~~i~I~~q~~~~~~dKflvq~~~ 80 (109)
T 1row_A 39 NNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKEDKLVVHFAS 80 (109)
T ss_dssp CSSSEEEECSEEEECTTEEEEEEEEECSCCCEEEEEEEEEEE
T ss_pred CCCceEEcCCceEECCCCeEEEEEEeCCCCCCCCEEEEEEEE
Confidence 4445888877778899999776665 2222334456666553
No 54
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=26.28 E-value=27 Score=22.69 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=11.2
Q ss_pred CCCceEEEEEeCCCC
Q psy993 120 KAKSRVTLTWVAPED 134 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~ 134 (164)
...+.+.+.|.+|..
T Consensus 16 ~s~tsi~v~W~~p~~ 30 (102)
T 3n1f_C 16 VSDTQIMLKWTYIPS 30 (102)
T ss_dssp CSSSCEEEEEECCC-
T ss_pred cCCCEEEEEeECCCh
Confidence 345689999999974
No 55
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.96 E-value=1.1e+02 Score=19.37 Aligned_cols=16 Identities=25% Similarity=0.765 Sum_probs=11.9
Q ss_pred CceEEEEEeCCCCCCc
Q psy993 122 KSRVTLTWVAPEDLNE 137 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G 137 (164)
++.+++.|.+|....|
T Consensus 21 ~~sv~l~W~~p~~~g~ 36 (110)
T 2yuw_A 21 DTTVTMRWRPPDHIGA 36 (110)
T ss_dssp SSCEEEEEECCSSCCS
T ss_pred CCeEEEEECCCCCCCC
Confidence 4579999999986433
No 56
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.55 E-value=32 Score=22.21 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred CceEEEEEeCCCCCCcc
Q psy993 122 KSRVTLTWVAPEDLNES 138 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~ 138 (164)
.+.+.+.|.+|....|.
T Consensus 31 ~~si~l~W~~p~~~~~~ 47 (116)
T 1x5g_A 31 PTSITVTWETPVSGNGE 47 (116)
T ss_dssp TTEEEEECCCCSCCSSC
T ss_pred CCEEEEEEeCCCCCCCc
Confidence 45799999999865554
No 57
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=25.39 E-value=46 Score=23.78 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=15.0
Q ss_pred CCCCceEEEEEeCCCCCCccE
Q psy993 119 AKAKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~~~G~V 139 (164)
....+.+.+.|.+|.+..|.|
T Consensus 120 ~~~~~sv~l~W~~p~~~~~~i 140 (209)
T 2vkw_A 120 GEDGNSIKVNLIKQDDGGSPI 140 (209)
T ss_dssp CTTSSCEEEEEECCCCTTSCC
T ss_pred cccCCeEEEEEECcccCCCCC
Confidence 445568999999996555543
No 58
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1
Probab=24.87 E-value=36 Score=22.76 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=12.3
Q ss_pred CCCceEEEEEeCCCCCCccE
Q psy993 120 KAKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~~~G~V 139 (164)
..++.+++.|++|.+.-..|
T Consensus 14 ~~~~sv~L~W~~P~~~G~pI 33 (115)
T 2ic2_A 14 LSDESVMLRWMVPRNDGLPI 33 (115)
T ss_dssp CC---EEEEEEEECCSSCCE
T ss_pred EeCCEEEEEEcCCCCCCCCC
Confidence 45568999999998743333
No 59
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=24.83 E-value=41 Score=25.16 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=14.8
Q ss_pred CceEEEEEeCCCCCCccE
Q psy993 122 KSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~V 139 (164)
.+.+.+.|.+|.+..|.|
T Consensus 100 ~~sv~l~W~~P~~~~G~i 117 (232)
T 4go6_B 100 PDGAHLTWEPPSVTSGKI 117 (232)
T ss_dssp TTEEEEEEECCSCCSSCC
T ss_pred CCEEEEEEeCCCCCCCce
Confidence 458999999999877754
No 60
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=24.75 E-value=69 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeeCCCceEEEEe-CC--------CCCceeEEEEEE
Q psy993 56 SVAPGGSISVVIS-SP--------PGLSFKGFFVQA 82 (164)
Q Consensus 56 ~y~pG~~~~VtL~-~~--------~~~~F~GFllqA 82 (164)
..+.||+|-|.|. +. ....|-||||..
T Consensus 97 ~L~~GD~V~l~~~~~~~~~~~~~~~~stFsGfLl~~ 132 (134)
T 2wnv_A 97 QLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFP 132 (134)
T ss_dssp EECTTCEEEEEEEEEEECCCCSSSSCCEEEEEEEEE
T ss_pred EECCCCEEEEEEeCCCceEEcCCCCCEEEEEEEeec
Confidence 4678999988886 21 236699999975
No 61
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=24.24 E-value=69 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=21.0
Q ss_pred eeeCCCceEEEEe-CC------CCCceeEEEEEEee
Q psy993 56 SVAPGGSISVVIS-SP------PGLSFKGFFVQARV 84 (164)
Q Consensus 56 ~y~pG~~~~VtL~-~~------~~~~F~GFllqAr~ 84 (164)
..++||+|-|.|. +. ....|-||||....
T Consensus 122 ~L~~GD~Vwl~l~~g~~~~~~~~~stFSGfLL~~d~ 157 (162)
T 2ka3_A 122 PLQAGDTVCVDLVMGQLAHSEEPLTIFSGALLYGDP 157 (162)
T ss_dssp CCCTTCEEEEECCSCSSCCCCCCCCCEEEEEEEECC
T ss_pred EeCCCCEEEEEEcCCcEecCCCCCEEEEEEEeccCC
Confidence 3568999888886 32 23569999999763
No 62
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=23.92 E-value=67 Score=19.73 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.3
Q ss_pred CceEEEEEeCCCCC
Q psy993 122 KSRVTLTWVAPEDL 135 (164)
Q Consensus 122 K~~v~~~W~AP~~~ 135 (164)
...+.+.|.+|.+.
T Consensus 17 ~~sv~L~W~~~~~~ 30 (88)
T 1k85_A 17 TSSITLSWTASTDN 30 (88)
T ss_dssp SSCEEEEEECCSCC
T ss_pred CCEEEEEECCCCCC
Confidence 45799999999863
No 63
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=23.59 E-value=1.5e+02 Score=18.78 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=10.9
Q ss_pred CCceEEEEEeCCCC
Q psy993 121 AKSRVTLTWVAPED 134 (164)
Q Consensus 121 ~K~~v~~~W~AP~~ 134 (164)
..+++.+.|.+|.+
T Consensus 14 t~~Sv~lsW~~p~~ 27 (98)
T 3tes_A 14 TEDSLRLSWTAPDA 27 (98)
T ss_dssp CSSCEEEEEECCTT
T ss_pred CCCeEEEEecCCcC
Confidence 44579999999874
No 64
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.57 E-value=77 Score=21.20 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.0
Q ss_pred CCCceEEEEEeCCCCC
Q psy993 120 KAKSRVTLTWVAPEDL 135 (164)
Q Consensus 120 ~~K~~v~~~W~AP~~~ 135 (164)
...+++++.|++|...
T Consensus 20 ~T~~Si~LsW~~p~g~ 35 (112)
T 2cui_A 20 VTTSSLRLNWEAPPGA 35 (112)
T ss_dssp CCSSCEEEECCCCTTS
T ss_pred ecCCeEEEEECCCCCC
Confidence 4456799999998643
No 65
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=22.76 E-value=34 Score=22.20 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=12.8
Q ss_pred CceEEEEEeCCCCCCcc
Q psy993 122 KSRVTLTWVAPEDLNES 138 (164)
Q Consensus 122 K~~v~~~W~AP~~~~G~ 138 (164)
.+++++.|.+|....|.
T Consensus 21 ~~Sv~lsW~~p~~~~g~ 37 (103)
T 3t04_D 21 PTSLKISWDAYYSSWQN 37 (103)
T ss_dssp TTEEEEECTTTTTTSCC
T ss_pred CCEEEEEccCCCCCCCc
Confidence 45899999999864444
No 66
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.66 E-value=33 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=14.2
Q ss_pred CCceEEEEEeCCCCCCccE
Q psy993 121 AKSRVTLTWVAPEDLNESV 139 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G~V 139 (164)
.++.+++.|.+|.+..+.|
T Consensus 23 ~~~sv~l~W~~p~~~~~~i 41 (110)
T 2db8_A 23 HNNSATLSWKQPPLSTVPA 41 (110)
T ss_dssp SSSEEEECCBCCTTCCSCC
T ss_pred CCCEEEEEECCCCCCCCCc
Confidence 4678999999998754443
No 67
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=22.17 E-value=40 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.478 Sum_probs=13.6
Q ss_pred CCceEEEEEeCCCCCCc
Q psy993 121 AKSRVTLTWVAPEDLNE 137 (164)
Q Consensus 121 ~K~~v~~~W~AP~~~~G 137 (164)
.++.+++.|.+|.+..|
T Consensus 20 ~~~sv~l~W~~p~~~~~ 36 (109)
T 1x5x_A 20 GITWLSLQWSKPSGTPS 36 (109)
T ss_dssp CSSEEEEECCCCSSCCS
T ss_pred cCCEEEEEEcCCCCCCC
Confidence 45689999999987655
No 68
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=22.07 E-value=2e+02 Score=19.87 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=24.5
Q ss_pred CCCCeEEEecCceeeCCCceEEEEe-CCCCCceeEEEEEEe
Q psy993 44 SESPYKIVLKKKSVAPGGSISVVIS-SPPGLSFKGFFVQAR 83 (164)
Q Consensus 44 ~~~py~i~~~~~~y~pG~~~~VtL~-~~~~~~F~GFllqAr 83 (164)
++.-|++...-..+.||+++.|+|. .+....=.=|++|.-
T Consensus 47 ~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~~~k~DKflVq~~ 87 (116)
T 1m1s_A 47 NNEHYRVRPVYGFVDAKGKSKLDINRLPGPPKEDKIVIQYA 87 (116)
T ss_dssp CTTTEEEECSEEEECTTCEEEEEEEECSCCSCEEEEEEEEE
T ss_pred CCCceEEcCCceEECCCCeEEEEEEeCCCCCCCCEEEEEEE
Confidence 3445888777777889999766665 221122345666654
No 69
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=21.74 E-value=1.1e+02 Score=19.77 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=12.1
Q ss_pred CCCCceEEEEEeCCCC
Q psy993 119 AKAKSRVTLTWVAPED 134 (164)
Q Consensus 119 ~~~K~~v~~~W~AP~~ 134 (164)
....+.+.+.|.+|..
T Consensus 18 ~~t~~sv~lsW~~p~~ 33 (115)
T 2cuh_A 18 NLTEGFAVLHWKPPQN 33 (115)
T ss_dssp CCSSSCEEEEEECCSS
T ss_pred eccCCeEEEEEECCCC
Confidence 3345689999999864
No 70
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=43 Score=21.79 Aligned_cols=18 Identities=17% Similarity=0.589 Sum_probs=13.4
Q ss_pred CceEEEEEeCCCC--CCccE
Q psy993 122 KSRVTLTWVAPED--LNESV 139 (164)
Q Consensus 122 K~~v~~~W~AP~~--~~G~V 139 (164)
.+.+.+.|.+|.. ..|.|
T Consensus 42 ~~sv~l~W~~p~~~~~~g~i 61 (124)
T 2ed9_A 42 SRSIKVSWLPPPSGTQNGFI 61 (124)
T ss_dssp TTEEEEECBCCCTTTCCSCC
T ss_pred CCEEEEEEECcCCcCCCcEE
Confidence 3579999999987 45543
No 71
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=21.48 E-value=81 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.6
Q ss_pred CceEEEEEeCCCC
Q psy993 122 KSRVTLTWVAPED 134 (164)
Q Consensus 122 K~~v~~~W~AP~~ 134 (164)
.+.+.+.|.+|..
T Consensus 42 ~~Si~lsW~~p~~ 54 (121)
T 2ocf_D 42 PTSLLISWDAPAV 54 (121)
T ss_dssp SSCEEEEEECCSS
T ss_pred CCEEEEEEcCCCC
Confidence 4579999999974
No 72
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=21.11 E-value=1.1e+02 Score=21.62 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=17.5
Q ss_pred eeCCCceEEEEe-CC---------CCCceeEEEEEEee
Q psy993 57 VAPGGSISVVIS-SP---------PGLSFKGFFVQARV 84 (164)
Q Consensus 57 y~pG~~~~VtL~-~~---------~~~~F~GFllqAr~ 84 (164)
...||+|.|.+. +. ....|.||||...-
T Consensus 98 L~~GD~V~v~~~~~~~~~~~~~~~~~s~FsGfLl~~D~ 135 (148)
T 4f3j_A 98 LEPEDQVWVQVGVGDYIGIYASIKTDSTFSGFLVYSDW 135 (148)
T ss_dssp ECTTCEEEEECCSTTCEEEECBTTBCCEEEEEEEEESC
T ss_pred cCCCCEEEEEEEcCCCceEEcCCCCCeEEEEEEEeecC
Confidence 557787777664 21 12458888887643
No 73
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=20.89 E-value=58 Score=21.62 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCCCCeEEEecCceeeCCCceEEEEeCCCCCceeEEEEEEe
Q psy993 32 MTPKHPQTVPQDSESPYKIVLKKKSVAPGGSISVVISSPPGLSFKGFFVQAR 83 (164)
Q Consensus 32 m~P~H~g~~pq~~~~py~i~~~~~~y~pG~~~~VtL~~~~~~~F~GFllqAr 83 (164)
|.|.| ...+.....||+.. +.+++..+|+|.... . --||-|...
T Consensus 1 ~~~~~-~~~~~~~~d~~t~~-----~~~~~~~~v~l~~~~-~-glG~~l~~~ 44 (112)
T 2r4h_A 1 MHHHH-HHSSGVDLGTENLY-----FQSMDFYTVELERGA-K-GFGFSLRGG 44 (112)
T ss_dssp ----------------------------CCEEEEEEECBT-T-BTSEEEEEC
T ss_pred Ccccc-cccccCCCCCcccc-----cCCCceEEEEEEcCC-C-ccCEEEecc
Confidence 44555 44455555677653 445777889998432 2 257777653
No 74
>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A
Probab=20.36 E-value=70 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=19.5
Q ss_pred ceeeCCCceEEEEe-CCCCCceeEEEEEEeeC
Q psy993 55 KSVAPGGSISVVIS-SPPGLSFKGFFVQARVG 85 (164)
Q Consensus 55 ~~y~pG~~~~VtL~-~~~~~~F~GFllqAr~~ 85 (164)
..|+-|+ +.|.+. ......|||++||-+-.
T Consensus 130 ~~Y~~~d-f~VR~~Nvf~~~~fKGlLiEiEy~ 160 (212)
T 2hzm_A 130 ETLILDG-LTVRLVNLFSSTGFKGLLIELQAD 160 (212)
T ss_dssp EEEEETT-EEEEEEEEEETTEEEEEEEEEEES
T ss_pred ceeEecC-EEEEEeeEEEcCcceeEEEEEEec
Confidence 4466555 555555 22335699999999854
Done!