RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy993
(164 letters)
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion,
extrace matrix, glycoprotein, secreted; 1.45A {Homo
sapiens}
Length = 149
Score = 97.2 bits (241), Expect = 1e-26
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 11/138 (7%)
Query: 23 GAPEGVCADMTPKHPQTVPQDSESPYKIVLKKKSVAPGGSISVVISSPPGLSFKGFFVQA 82
G+ EG C+ + +E ++ PG S V +S+ P F+GF + A
Sbjct: 1 GSSEGYCSRILRAQGTRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIA 60
Query: 83 RV-------GDKPVGQFTKSPSSKFYKVINCLGGSQNAATHIDAKAKSRVTLTWVAPEDL 135
+ G F + + NC A T + ++R+ + W+AP
Sbjct: 61 LRENREGDKEEDHAGTFQIIDEEETQFMSNC----PVAVTESTPRRRTRIQVFWIAPPAG 116
Query: 136 NESVNFVATVAKDGGEYW 153
V A++ + Y+
Sbjct: 117 TGCVILKASIVQKRIIYF 134
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT
glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Length = 180
Score = 89.2 bits (220), Expect = 3e-23
Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 26 EGVCADMTPKHPQTVPQDSESPYKIVLKKKSVAPGGSISVVISSPPGLSFKGFFVQARV- 84
EG C+ + +E ++ PG S V +S+ P F+GF + A
Sbjct: 19 EGYCSRILRAQGTRREGYTEFSLRVEGDPDFYKPGTSYRVTLSAAPPSYFRGFTLIALRE 78
Query: 85 ------GDKPVGQFTKSPSSKFYKVINCLGGSQNAATHIDAKAKSRVTLTWVAPEDLNES 138
+ G F + + NC A T + ++R+ + W+AP
Sbjct: 79 NREGDKEEDHAGTFQIIDEEETQFMSNC----PVAVTESTPRRRTRIQVFWIAPPAGTGC 134
Query: 139 VNFVATVAKDGGEYW 153
V A++ + Y+
Sbjct: 135 VILKASIVQKRIIYF 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 40/189 (21%), Positives = 63/189 (33%), Gaps = 65/189 (34%)
Query: 9 VSAVAISSVH---AFSSGAPE--------GV-CADMTPKH--PQTVPQDSE-------SP 47
V+AVAI+ +F + GV C + P P ++ +DS SP
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 48 ------------YKIVLKKKSVAPGG---SISV-------VISSPPGLSFKGFFVQARVG 85
V K S P G IS+ V+S PP S G + R
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-QSLYGLNLTLRKA 396
Query: 86 DKPVG--QFTKSPSSK----FYKV---INC------LGGSQNAATHIDAKAKSRVTLTWV 130
P G Q ++ P S+ F + L A+ + K + +++
Sbjct: 397 KAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVP----ASDLINKDLVKNNVSF- 450
Query: 131 APEDLNESV 139
+D+ V
Sbjct: 451 NAKDIQIPV 459
Score = 26.9 bits (59), Expect = 3.8
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 11/43 (25%)
Query: 61 GSISVVISSPPGLSFKGFFVQARVGDKPVGQFTKS---PSSKF 100
GS+ V+ P FF+ +++ + QF K P+ F
Sbjct: 14 GSLEHVLLVPTAS----FFIASQLQE----QFNKILPEPTEGF 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.89
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 13/34 (38%)
Query: 49 KIVLKK-----KSVAPGGSISVVISSPPGLSFKG 77
K LKK K A S P L+ K
Sbjct: 19 KQALKKLQASLKLYADD--------SAPALAIKA 44
>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels,
CBM33, copper monooxygenase, peroxide, superoxide,
CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A
{Neurospora crassa} PDB: 4eis_B*
Length = 225
Score = 27.3 bits (60), Expect = 2.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 104 INCLGGSQNAATHIDAKAKSRVTLTW 129
I C S A H A A S VTL W
Sbjct: 50 IQCNADSAPAKLHASAAAGSTVTLRW 75
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 27.3 bits (61), Expect = 2.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 96 PSSKFYKVINCLGGSQNAATHID 118
+F K + +GG NA T D
Sbjct: 65 GPGEFSKRVAAMGGRDNAFTTRD 87
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea
jecorina}
Length = 249
Score = 27.0 bits (59), Expect = 3.2
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 104 INCLGGSQNAATHIDAKAKSRVTLTW 129
I C + A A A S + W
Sbjct: 76 IVCHKNAAPGAISATAAAGSNIVFQW 101
>3zud_A GH61 isozyme A; hydrolase, degradation of recalcitrant biomass;
HET: HIC NAG TAM; 1.25A {Thermoascus aurantiacus} PDB:
2yet_A*
Length = 228
Score = 26.2 bits (57), Expect = 5.6
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 104 INCLGGSQNAATHIDAKAKSRVTLTW 129
I C G++ A V L W
Sbjct: 54 IICHRGAKPGALTAPVSPGGTVELQW 79
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 26.1 bits (58), Expect = 6.2
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 67 ISSPPGLSFKGFFVQARVGDKPVGQFTKSPSSKFY 101
I +P GLS +R D + ++
Sbjct: 203 IGAPAGLSI--SLCSSRFMDYALNDSKNGHVHGYF 235
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus
musculus} PDB: 2dg2_A
Length = 265
Score = 25.4 bits (56), Expect = 9.8
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 12 VAI---SSVHAFSSGAPEGVCADMT 33
+I S G P G+ D+
Sbjct: 186 ASIDIPSGWDV-EKGNPSGIQPDLL 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.380
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,322,118
Number of extensions: 124220
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 19
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)