BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9930
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1
Length = 576
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 1/51 (1%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA-APAMGGMGGM 54
K GIIDP KV+RTA+ DAA V+SL+TT E+++ +IPKEEA APAMGGMGGM
Sbjct: 524 KAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGM 574
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus
GN=HSPD1 PE=2 SV=1
Length = 573
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 37/40 (92%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus
GN=Hspd1 PE=1 SV=1
Length = 573
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 37/40 (92%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556
>sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1
PE=1 SV=1
Length = 573
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/40 (87%), Positives = 37/40 (92%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAEAVVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDP 556
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial OS=Drosophila melanogaster
GN=Hsp60 PE=1 SV=3
Length = 573
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 37/37 (100%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GIIDPTKVVRTAITDA+GVASLLTTAEAVVT+IPKE+
Sbjct: 513 GIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPKED 549
>sp|P31081|CH60_BOVIN 60 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPD1
PE=1 SV=2
Length = 573
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 36/40 (90%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1
PE=1 SV=2
Length = 573
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 36/40 (90%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556
>sp|Q5NVM5|CH60_PONAB 60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1
PE=2 SV=1
Length = 573
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 36/40 (90%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
GIIDPTKVVRTA+ DAAGVASLLTTAE VVT+IPKEE P
Sbjct: 517 GIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDP 556
>sp|Q5ZL72|CH60_CHICK 60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1
PE=1 SV=1
Length = 573
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGM 51
GIIDPTKVVRTA+ DAAGVASLL+TAEAVVT++PKEE PAMGGM
Sbjct: 517 GIIDPTKVVRTALMDAAGVASLLSTAEAVVTEVPKEEKEPAMGGM 561
>sp|Q9VMN5|CH60C_DROME 60 kDa heat shock protein homolog 2, mitochondrial OS=Drosophila
melanogaster GN=Hsp60C PE=2 SV=2
Length = 576
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 36/37 (97%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GIIDPTKVVRTAI+DAAGVASLLTTAEAVVT++P EE
Sbjct: 517 GIIDPTKVVRTAISDAAGVASLLTTAEAVVTELPLEE 553
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1
Length = 587
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP-KEEAAPA 47
K GIIDP KV+RTA+ DAA V+SLLTT EAVVT+IP KE+A+PA
Sbjct: 525 KSGIIDPVKVIRTALVDAASVSSLLTTTEAVVTEIPTKEDASPA 568
>sp|P50140|CH60_CAEEL Chaperonin homolog Hsp-60, mitochondrial OS=Caenorhabditis elegans
GN=hsp-60 PE=1 SV=2
Length = 568
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44
+ GIIDPTKVVRTA+ DA+GVASLL T E VVT+IPKEEA
Sbjct: 507 EAGIIDPTKVVRTALQDASGVASLLATTECVVTEIPKEEA 546
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana
GN=At2g33210 PE=1 SV=1
Length = 585
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP-KEEAAP 46
K GIIDP KV+RTA+ DAA V+SLLTT EAVVT+IP KE A+P
Sbjct: 522 KAGIIDPLKVIRTALVDAASVSSLLTTTEAVVTEIPTKEVASP 564
>sp|Q9VPS5|CH60B_DROME 60 kDa heat shock protein homolog 1, mitochondrial OS=Drosophila
melanogaster GN=Hsp60B PE=2 SV=1
Length = 648
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGG 53
GIIDPTKV+RTAITDAAGVASLL+T E V+TD ++ + G GG
Sbjct: 512 GIIDPTKVLRTAITDAAGVASLLSTTEVVITDSRNDDLLSKLSGAGG 558
>sp|Q98IV5|CH601_RHILO 60 kDa chaperonin 1 OS=Rhizobium loti (strain MAFF303099) GN=groL1
PE=3 SV=1
Length = 543
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
K GI+DP KVVRTA+ DA +A+LL TAEA++TDIP ++AAPA
Sbjct: 491 KAGIVDPAKVVRTALQDAGSIAALLITAEAMITDIPAKDAAPA 533
>sp|Q95046|CH60_TRYCR Chaperonin HSP60, mitochondrial OS=Trypanosoma cruzi GN=HSP60 PE=2
SV=1
Length = 562
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
+ GIIDP +VVR AITDA VASL+ TAEA + D+PKEE
Sbjct: 504 EAGIIDPARVVRVAITDAVSVASLMMTAEAAIVDLPKEE 542
>sp|Q130Z3|CH602_RHOPS 60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5)
GN=groL2 PE=3 SV=1
Length = 550
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DP KVVRTA+ DAA VA+LL T EA+V ++P+ EAAPAM
Sbjct: 493 GIVDPAKVVRTALQDAASVAALLVTTEAMVAELPR-EAAPAM 533
>sp|Q2IZ16|CH601_RHOP2 60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2)
GN=groL1 PE=3 SV=1
Length = 550
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DP KVVRTA+ DA+ VA+LL T EA+V ++PK EAAPAM
Sbjct: 493 GIVDPAKVVRTALQDASSVAALLVTTEAMVAELPK-EAAPAM 533
>sp|Q37683|CH60_TRYBB Chaperonin HSP60, mitochondrial OS=Trypanosoma brucei brucei
GN=HSP60 PE=2 SV=2
Length = 562
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
+ GIIDP +VVR A+TDAA VASL+ TAEA V D+PK++A A
Sbjct: 504 EAGIIDPARVVRVALTDAASVASLMMTAEAAVVDLPKDDAPAA 546
>sp|A4WUL5|CH60_RHOS5 60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 /
ATH 2.4.3) GN=groL PE=3 SV=1
Length = 546
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
K G+IDP KVVRTA+ DAA VASLL T EA++ D P+ ++APA
Sbjct: 491 KFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSAPA 533
>sp|Q93MH1|CH60_RHOPL 60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1
Length = 546
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
K G+IDP KVVRTA+ DAA VASLL T EA++ D P+ ++APA
Sbjct: 491 KFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSAPA 533
>sp|B4S112|CH60_ALTMD 60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep
ecotype) GN=groL PE=3 SV=1
Length = 546
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DPTKV R+A+ A+ +ASL+ T EA+V ++PK+EAAPAM
Sbjct: 492 GILDPTKVTRSALQFASSIASLMITTEAMVAELPKDEAAPAM 533
>sp|Q0AS40|CH60_MARMM 60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3
SV=1
Length = 551
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 29/37 (78%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
G+IDP KVVRTA+ DAA VASLL T EA V D PKEE
Sbjct: 493 GVIDPAKVVRTALQDAASVASLLITTEAAVADAPKEE 529
>sp|C5CPP8|CH60_VARPS 60 kDa chaperonin OS=Variovorax paradoxus (strain S110) GN=groL
PE=3 SV=1
Length = 550
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44
GI+DPTKV RTA+ +AA VASLL T EA+V D PKEEA
Sbjct: 493 GILDPTKVTRTALQNAASVASLLLTTEAMVADAPKEEA 530
>sp|B2ICU4|CH60_BEII9 60 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC
9039 / DSM 1715 / NCIB 8712) GN=groL PE=3 SV=1
Length = 548
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 32/40 (80%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44
K GIIDPTKVVRTA+ DAA +A LL T EA +T+ PK+EA
Sbjct: 491 KLGIIDPTKVVRTALQDAASIAGLLITTEATITEAPKKEA 530
>sp|Q28LY7|CH60_JANSC 60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1
Length = 546
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
K G+IDP KVVRTA+ DAA VA LL T EA+V D P +E APA
Sbjct: 490 KFGVIDPAKVVRTALQDAASVAGLLITTEAMVADKPAKEGAPA 532
>sp|Q1QIL6|CH603_NITHX 60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM
10229) GN=groL3 PE=3 SV=1
Length = 545
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Query: 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
M AK GIIDP KVVRTA+ DAA VA LL T EA+V ++PKEE
Sbjct: 489 MVAK--GIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEE 529
>sp|Q07TB7|CH601_RHOP5 60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisA53)
GN=groL1 PE=3 SV=1
Length = 547
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DP KVVRTA+ DAA V++LL T EA+V ++P+ +AAPAM
Sbjct: 493 GIVDPAKVVRTALQDAASVSALLVTTEAMVAELPR-DAAPAM 533
>sp|A5VBQ6|CH60_SPHWW 60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014
/ JCM 10273) GN=groL PE=3 SV=1
Length = 549
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
G+IDPTKVVRTA+ DAA VA LL T EA + ++P E+ APAM
Sbjct: 493 GVIDPTKVVRTALQDAASVAGLLITTEATIAELP-EDKAPAM 533
>sp|Q1RIZ3|CH60_RICBR 60 kDa chaperonin OS=Rickettsia bellii (strain RML369-C) GN=groL
PE=3 SV=1
Length = 550
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
K GIIDP KVVRTA+ DAA VASL+ T E ++ D P+++ P
Sbjct: 491 KAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPEDKENP 532
>sp|A8GW07|CH60_RICB8 60 kDa chaperonin OS=Rickettsia bellii (strain OSU 85-389) GN=groL
PE=3 SV=1
Length = 550
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
K GIIDP KVVRTA+ DAA VASL+ T E ++ D P+++ P
Sbjct: 491 KAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPEDKENP 532
>sp|A7HAD3|CH601_ANADF 60 kDa chaperonin 1 OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=groL1 PE=3 SV=1
Length = 547
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 4 KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGM 51
+K G+IDPTKV RTA+ +AA VASLL T EA+V + PK++ APA GGM
Sbjct: 489 EKAGVIDPTKVSRTALQNAASVASLLLTTEAMVAEKPKKKGAPAGGGM 536
>sp|O85754|CH60_RICTY 60 kDa chaperonin OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=groL PE=3 SV=2
Length = 550
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
K GIIDP KVVRTA+ DAA VASL+ T E ++ D P ++ P
Sbjct: 491 KAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEEP 532
>sp|Q9ZCT7|CH60_RICPR 60 kDa chaperonin OS=Rickettsia prowazekii (strain Madrid E)
GN=groL PE=3 SV=1
Length = 550
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46
K GIIDP KVVRTA+ DAA VASL+ T E ++ D P ++ P
Sbjct: 491 KAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEEP 532
>sp|Q2WAW8|CH60_MAGSA 60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264) GN=groL PE=3 SV=1
Length = 552
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44
K GIIDPTKVVRTA+ DAA VA LL T EA++ + PK++A
Sbjct: 491 KAGIIDPTKVVRTALQDAASVAGLLITTEAMIAERPKKDA 530
>sp|A9BXL3|CH60_DELAS 60 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
GN=groL PE=3 SV=1
Length = 547
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DPTKV RTA+ +AA VASLL T EA++ + PK E PAM
Sbjct: 492 GILDPTKVTRTALQNAASVASLLLTTEAMIAESPKAEGGPAM 533
>sp|Q8Y1P8|CH60_RALSO 60 kDa chaperonin OS=Ralstonia solanacearum (strain GMI1000)
GN=groL PE=3 SV=1
Length = 547
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
G++DPTKV RTA+ +AA VASL+ T + V ++PK++AAPA
Sbjct: 492 GVLDPTKVTRTALQNAASVASLMLTTDCAVAELPKDDAAPA 532
>sp|Q7UM99|CH601_RHOBA 60 kDa chaperonin 1 OS=Rhodopirellula baltica (strain SH1) GN=groL1
PE=3 SV=2
Length = 571
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GI+DP KVVRT++T+AA VA+LL T E++VT+IP EE
Sbjct: 495 GIVDPAKVVRTSLTNAASVAALLLTTESLVTEIPVEE 531
>sp|P42383|CH60_HELPY 60 kDa chaperonin OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=groL PE=3 SV=2
Length = 546
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
K GIIDP KV R A+ +A V+SLL T EA V +I +E+AAPAM
Sbjct: 487 KEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAM 530
>sp|Q9ZN50|CH60_HELPJ 60 kDa chaperonin OS=Helicobacter pylori (strain J99) GN=groL PE=3
SV=1
Length = 546
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
K GIIDP KV R A+ +A V+SLL T EA V +I +E+AAPAM
Sbjct: 487 KEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAM 530
>sp|Q1CVE5|CH60_HELPH 60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL
PE=3 SV=1
Length = 546
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
K GIIDP KV R A+ +A V+SLL T EA V +I +E+AAPAM
Sbjct: 487 KEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAM 530
>sp|B5Z6D1|CH60_HELPG 60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3
SV=1
Length = 546
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 32/44 (72%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
K GIIDP KV R A+ +A V+SLL T EA V +I +E+AAPAM
Sbjct: 487 KEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAM 530
>sp|A5G1G2|CH60_ACICJ 60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL
PE=3 SV=1
Length = 549
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44
K GIIDPTKVVRTA+ DAA VA LL T EA+V + P+++A
Sbjct: 491 KAGIIDPTKVVRTALQDAASVAGLLITTEAMVAERPEKKA 530
>sp|Q20X88|CH602_RHOPB 60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18)
GN=groL2 PE=3 SV=1
Length = 551
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAM 48
GI+DP KVVRTA+ DA+ VA+LL T E +V ++P+ +AAPAM
Sbjct: 493 GIVDPAKVVRTALQDASSVAALLVTTECMVAEMPR-DAAPAM 533
>sp|P26194|CH60_TATMI 60 kDa chaperonin OS=Tatlockia micdadei GN=groL PE=2 SV=1
Length = 546
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GI+DPTKV RTA+ +AA VASL+ T E +V D+PK+E
Sbjct: 489 GILDPTKVTRTALQNAASVASLMLTTECMVADLPKKE 525
>sp|Q983S4|CH604_RHILO 60 kDa chaperonin 4 OS=Rhizobium loti (strain MAFF303099) GN=groL4
PE=3 SV=1
Length = 551
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
GI+DP KVVRTA+ DAA VA LL T EA++ + PK+E+A
Sbjct: 492 GIVDPVKVVRTALQDAASVAGLLVTTEAMIAEAPKKESA 530
>sp|A7HQQ0|CH60_PARL1 60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 /
DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1
Length = 550
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 6 GGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GIIDPTKVVRTA+ DAA +A LL T EA++ D PK++
Sbjct: 491 AGIIDPTKVVRTALQDAASIAGLLITTEAMIADAPKKD 528
>sp|Q98AX9|CH603_RHILO 60 kDa chaperonin 3 OS=Rhizobium loti (strain MAFF303099) GN=groL3
PE=3 SV=1
Length = 552
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
GI+DP KVVRTA+ DAA VA LL T EA++ + PK+E+A
Sbjct: 492 GIVDPVKVVRTALQDAASVAGLLVTTEAMIAEAPKKESA 530
>sp|Q2N5R9|CH602_ERYLH 60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594)
GN=groL2 PE=3 SV=1
Length = 550
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA 45
K G+IDPTKVVR A+ DAA VA LL T EA ++++P+++++
Sbjct: 491 KAGVIDPTKVVRVALQDAASVAGLLITTEAAISEVPEDKSS 531
>sp|A5ECI7|CH601_BRASB 60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=groL1 PE=3 SV=1
Length = 547
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42
M AK GIIDP KVVRTA+ DA+ VA LL T EA+V ++PKE
Sbjct: 489 MVAK--GIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKE 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,918,846
Number of Sequences: 539616
Number of extensions: 1118907
Number of successful extensions: 17351
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 10204
Number of HSP's gapped (non-prelim): 4642
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)