Query psy9930
Match_columns 67
No_of_seqs 104 out of 1026
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:17:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 99.3 2.5E-12 5.5E-17 98.2 5.7 43 1-43 486-528 (542)
2 PRK12849 groEL chaperonin GroE 99.3 3.2E-12 6.9E-17 97.6 6.1 43 1-43 485-527 (542)
3 PRK12852 groEL chaperonin GroE 99.3 6.3E-12 1.4E-16 95.8 6.1 44 1-44 487-530 (545)
4 PRK12850 groEL chaperonin GroE 99.3 7.2E-12 1.6E-16 95.6 6.0 44 1-44 486-529 (544)
5 PRK14104 chaperonin GroEL; Pro 99.2 1.7E-11 3.6E-16 93.7 5.9 43 1-43 487-529 (546)
6 PRK12851 groEL chaperonin GroE 99.1 2.2E-10 4.7E-15 87.5 5.3 44 1-44 486-529 (541)
7 PLN03167 Chaperonin-60 beta su 99.0 4.3E-10 9.3E-15 87.2 5.6 43 1-43 543-585 (600)
8 COG0459 GroL Chaperonin GroEL 99.0 3.5E-10 7.6E-15 86.7 4.1 43 1-43 476-518 (524)
9 PTZ00212 T-complex protein 1 s 98.9 8.5E-10 1.8E-14 83.7 4.4 42 1-42 488-529 (533)
10 CHL00093 groEL chaperonin GroE 98.9 7.7E-10 1.7E-14 84.2 4.1 41 1-41 487-527 (529)
11 cd03336 TCP1_beta TCP-1 (CTT o 98.9 1.5E-09 3.3E-14 82.0 4.1 40 1-40 476-515 (517)
12 TIGR02347 chap_CCT_zeta T-comp 98.9 1.6E-09 3.6E-14 82.4 3.9 41 1-41 488-528 (531)
13 TIGR02346 chap_CCT_theta T-com 98.9 2.3E-09 4.9E-14 81.5 4.2 42 1-42 482-523 (531)
14 TIGR02341 chap_CCT_beta T-comp 98.9 2.5E-09 5.3E-14 81.1 4.2 41 1-41 477-517 (519)
15 cd03342 TCP1_zeta TCP-1 (CTT o 98.8 2.8E-09 6E-14 80.2 3.9 39 1-39 445-483 (484)
16 TIGR02344 chap_CCT_gamma T-com 98.8 3.9E-09 8.4E-14 79.7 4.2 40 1-40 484-523 (525)
17 PTZ00114 Heat shock protein 60 98.8 3.4E-09 7.3E-14 81.2 3.9 42 1-42 502-543 (555)
18 cd03338 TCP1_delta TCP-1 (CTT 98.8 4.5E-09 9.9E-14 79.1 3.5 38 1-38 478-515 (515)
19 TIGR02345 chap_CCT_eta T-compl 98.8 5.9E-09 1.3E-13 78.9 4.1 39 1-39 482-520 (522)
20 cd03343 cpn60 cpn60 chaperonin 98.8 5.4E-09 1.2E-13 78.6 3.8 38 1-38 479-516 (517)
21 cd03335 TCP1_alpha TCP-1 (CTT 98.8 4.5E-09 9.7E-14 79.5 3.3 40 1-40 488-527 (527)
22 cd03340 TCP1_eta TCP-1 (CTT or 98.8 5.4E-09 1.2E-13 78.9 3.7 39 1-39 482-520 (522)
23 TIGR02348 GroEL chaperonin Gro 98.8 6.6E-09 1.4E-13 79.0 4.0 40 1-40 484-523 (524)
24 TIGR02342 chap_CCT_delta T-com 98.7 5.8E-09 1.3E-13 78.9 3.1 38 1-38 479-516 (517)
25 TIGR02340 chap_CCT_alpha T-com 98.7 9.9E-09 2.2E-13 77.9 4.3 42 1-42 492-533 (536)
26 cd03341 TCP1_theta TCP-1 (CTT 98.7 5.8E-09 1.3E-13 78.1 3.0 38 1-38 434-471 (472)
27 cd03339 TCP1_epsilon TCP-1 (CT 98.7 7.1E-09 1.5E-13 78.4 3.0 37 1-37 490-526 (526)
28 TIGR02339 thermosome_arch ther 98.7 1.1E-08 2.4E-13 77.2 3.7 37 1-37 482-518 (519)
29 cd00309 chaperonin_type_I_II c 98.7 1.2E-08 2.5E-13 75.7 3.4 37 1-37 428-464 (464)
30 KOG0356|consensus 98.7 9.7E-09 2.1E-13 79.5 1.8 43 1-43 499-541 (550)
31 TIGR02343 chap_CCT_epsi T-comp 98.6 2.1E-08 4.5E-13 76.3 3.5 37 1-37 494-530 (532)
32 cd03337 TCP1_gamma TCP-1 (CTT 98.6 2.1E-08 4.4E-13 75.3 3.1 37 1-37 443-479 (480)
33 PF00118 Cpn60_TCP1: TCP-1/cpn 98.6 2.1E-08 4.5E-13 73.4 2.3 39 2-40 447-485 (485)
34 cd03344 GroEL GroEL_like type 98.5 4.6E-08 9.9E-13 74.5 2.8 37 1-37 483-519 (520)
35 KOG0361|consensus 98.4 2E-07 4.4E-12 71.2 3.8 46 1-46 485-530 (543)
36 KOG0363|consensus 97.9 5.6E-06 1.2E-10 63.2 2.7 43 1-43 481-523 (527)
37 KOG0362|consensus 97.8 1.1E-05 2.3E-10 62.7 1.7 43 2-44 484-526 (537)
38 KOG0364|consensus 97.4 0.0001 2.2E-09 57.0 2.0 41 1-41 483-523 (527)
39 KOG0357|consensus 97.1 0.00037 7.9E-09 52.6 2.4 39 2-40 359-397 (400)
40 KOG0358|consensus 96.5 0.0014 3.1E-08 50.4 1.6 38 1-38 496-533 (534)
41 KOG0360|consensus 95.5 0.007 1.5E-07 47.3 1.6 42 2-43 499-540 (545)
42 KOG0359|consensus 89.0 0.44 9.5E-06 37.3 3.0 36 4-39 480-515 (520)
43 TIGR01688 dltC D-alanine--poly 24.8 48 0.0011 19.5 1.3 15 2-16 24-38 (73)
44 COG4840 Uncharacterized protei 21.5 59 0.0013 19.4 1.2 30 2-31 21-50 (71)
45 COG4130 Predicted sugar epimer 21.1 62 0.0013 23.7 1.5 27 6-32 137-163 (272)
46 cd07027 RNAP_RPB11_like RPB11 20.6 1.5E+02 0.0034 17.5 2.9 24 7-30 59-82 (83)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.32 E-value=2.5e-12 Score=98.16 Aligned_cols=43 Identities=53% Similarity=0.761 Sum_probs=40.2
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||+++|++|+++|++|||+|++|...|...
T Consensus 486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~ 528 (542)
T PRK00013 486 VDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKK 528 (542)
T ss_pred eehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4899999999999999999999999999999999999988654
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.32 E-value=3.2e-12 Score=97.62 Aligned_cols=43 Identities=53% Similarity=0.711 Sum_probs=39.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||++.|||||++||+++|++|+++|++|||+|++|+.+|.+.
T Consensus 485 ~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~ 527 (542)
T PRK12849 485 GDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEE 527 (542)
T ss_pred ccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccC
Confidence 4899999999999999999999999999999999999987543
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.28 E-value=6.3e-12 Score=95.77 Aligned_cols=44 Identities=57% Similarity=0.823 Sum_probs=40.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||+++|++|+++|++|||+|++|++.|.++.
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~ 530 (545)
T PRK12852 487 VDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDA 530 (545)
T ss_pred ccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCC
Confidence 48999999999999999999999999999999999999876543
No 4
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.27 E-value=7.2e-12 Score=95.63 Aligned_cols=44 Identities=52% Similarity=0.734 Sum_probs=40.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||++.|||||++||+++|++|+++|++|||+|++|...|...+
T Consensus 486 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~ 529 (544)
T PRK12850 486 GDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAA 529 (544)
T ss_pred cchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCC
Confidence 48999999999999999999999999999999999999876543
No 5
>PRK14104 chaperonin GroEL; Provisional
Probab=99.23 E-value=1.7e-11 Score=93.75 Aligned_cols=43 Identities=58% Similarity=0.763 Sum_probs=40.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||++.|||||++||+++|++|+++|++|||+|++|...|..+
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~ 529 (546)
T PRK14104 487 GNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKG 529 (546)
T ss_pred eehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 4899999999999999999999999999999999999987654
No 6
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.06 E-value=2.2e-10 Score=87.53 Aligned_cols=44 Identities=52% Similarity=0.693 Sum_probs=40.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||+.||+++|++|+++|++|||+|++|...|.+.+
T Consensus 486 ~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~ 529 (541)
T PRK12851 486 GDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEP 529 (541)
T ss_pred cchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCC
Confidence 48999999999999999999999999999999999999876543
No 7
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.02 E-value=4.3e-10 Score=87.16 Aligned_cols=43 Identities=44% Similarity=0.597 Sum_probs=39.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||+++|++|+++|++|||+|++|+..+.++
T Consensus 543 ~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~ 585 (600)
T PLN03167 543 EDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPE 585 (600)
T ss_pred cchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4899999999999999999999999999999999999976554
No 8
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.5e-10 Score=86.71 Aligned_cols=43 Identities=40% Similarity=0.586 Sum_probs=40.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
+||++.|||||++|+++||++|+|+|+++||+|++|.+.|.++
T Consensus 476 ~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 476 DDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred cchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 3799999999999999999999999999999999999988753
No 9
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=98.94 E-value=8.5e-10 Score=83.73 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=39.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~ 42 (67)
.||+++|||||++||+++|+.|+++|++|||+|++|...|.+
T Consensus 488 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~ 529 (533)
T PTZ00212 488 GDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQ 529 (533)
T ss_pred cchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCcc
Confidence 489999999999999999999999999999999999987543
No 10
>CHL00093 groEL chaperonin GroEL
Probab=98.94 E-value=7.7e-10 Score=84.18 Aligned_cols=41 Identities=39% Similarity=0.665 Sum_probs=38.7
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||++.|||||++||+++|++|+++|++|||+|++|+..|.
T Consensus 487 ~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 487 VNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999999998763
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.89 E-value=1.5e-09 Score=82.00 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=38.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|...|
T Consensus 476 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 476 GDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 4899999999999999999999999999999999999876
No 12
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.88 E-value=1.6e-09 Score=82.42 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=38.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||++.|||||++||+++|++|+++|++|||+|++|..+|.
T Consensus 488 ~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 488 IDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 48999999999999999999999999999999999998664
No 13
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.86 E-value=2.3e-09 Score=81.48 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=39.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~ 42 (67)
.||+++|||||+.||+++|++|+++|++|||+|++|...|..
T Consensus 482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~ 523 (531)
T TIGR02346 482 KDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAG 523 (531)
T ss_pred cChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCC
Confidence 489999999999999999999999999999999999987543
No 14
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.86 E-value=2.5e-09 Score=81.10 Aligned_cols=41 Identities=27% Similarity=0.479 Sum_probs=38.8
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||++.|||||+.||+++|++|+++|++|||+|++|+..|.
T Consensus 477 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 477 ADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred cchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 48999999999999999999999999999999999999773
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.84 E-value=2.8e-09 Score=80.15 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=36.8
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|+..
T Consensus 445 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 445 MDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 489999999999999999999999999999999999763
No 16
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.82 E-value=3.9e-09 Score=79.73 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=38.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|...|
T Consensus 484 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 484 VDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred ccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 4899999999999999999999999999999999998865
No 17
>PTZ00114 Heat shock protein 60; Provisional
Probab=98.82 E-value=3.4e-09 Score=81.17 Aligned_cols=42 Identities=60% Similarity=0.852 Sum_probs=39.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~ 42 (67)
.||+++|||||++||+++|++|+++|++|||+|++|+..|..
T Consensus 502 ~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 502 VNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred eeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 489999999999999999999999999999999999997765
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.78 E-value=4.5e-09 Score=79.10 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=36.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||++.|||||++||+++|++|+++|++|||+|++|.+
T Consensus 478 ~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 478 TNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 48999999999999999999999999999999999864
No 19
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.78 E-value=5.9e-09 Score=78.92 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=36.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||+++|||||++||+++|++|+++|++|||+|++|...
T Consensus 482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 482 GDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred cchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 489999999999999999999999999999999999773
No 20
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=98.78 E-value=5.4e-09 Score=78.60 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=36.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|+.|+++|++|||+|++|+.
T Consensus 479 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 479 VDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 48999999999999999999999999999999999975
No 21
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.78 E-value=4.5e-09 Score=79.53 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=37.5
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
.||++.|||||+.||+++|+.|+++|++|||+|++|...|
T Consensus 488 ~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 488 RDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred cchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 4899999999999999999999999999999999997754
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.77 E-value=5.4e-09 Score=78.91 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=36.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|..+
T Consensus 482 ~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 482 ADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred cchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 489999999999999999999999999999999999774
No 23
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=98.77 E-value=6.6e-09 Score=79.02 Aligned_cols=40 Identities=55% Similarity=0.755 Sum_probs=37.5
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
.||++.|||||+.||+++|++|+++|++|||+|++|.+.|
T Consensus 484 ~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 484 EDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 4899999999999999999999999999999999998754
No 24
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.75 E-value=5.8e-09 Score=78.87 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=36.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||++.|||||++||+++|++|+++|++|||+|++|..
T Consensus 479 ~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 479 TDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred cchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 48999999999999999999999999999999999875
No 25
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.75 E-value=9.9e-09 Score=77.89 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~ 42 (67)
.||++.|||||+.||+++|+.|+++|++|||+|++|...|.+
T Consensus 492 ~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 492 RDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred ccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 389999999999999999999999999999999999987643
No 26
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.75 E-value=5.8e-09 Score=78.11 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=35.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus 434 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 434 KDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 48999999999999999999999999999999999864
No 27
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.73 E-value=7.1e-09 Score=78.45 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=35.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|+
T Consensus 490 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 490 NDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 4899999999999999999999999999999999874
No 28
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=98.72 E-value=1.1e-08 Score=77.20 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=35.4
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||++||+++|+.|+++|++|||+|++|+
T Consensus 482 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 482 EDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred cchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 4899999999999999999999999999999999985
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=98.70 E-value=1.2e-08 Score=75.73 Aligned_cols=37 Identities=41% Similarity=0.624 Sum_probs=35.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||++||+++|+.|+|+|++|||+|.+|+
T Consensus 428 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 428 VDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred eehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 3899999999999999999999999999999999974
No 30
>KOG0356|consensus
Probab=98.65 E-value=9.7e-09 Score=79.54 Aligned_cols=43 Identities=79% Similarity=1.023 Sum_probs=41.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++||+||+||+|+||..|.++|++++|++++|++.|+++
T Consensus 499 ~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 499 VDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 4899999999999999999999999999999999999998865
No 31
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.65 E-value=2.1e-08 Score=76.31 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=35.4
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||+.||+++|+.|+++|++|||+|++|.
T Consensus 494 ~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 494 NDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS 530 (532)
T ss_pred ccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence 4899999999999999999999999999999999985
No 32
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.63 E-value=2.1e-08 Score=75.32 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=35.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||+.||+++|+.|+++|++|||+|++|.
T Consensus 443 ~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 443 VDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 4899999999999999999999999999999999874
No 33
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=98.61 E-value=2.1e-08 Score=73.39 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=37.3
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
||++.||+||+.||+++|+.|+++|++|||+|.+|.++|
T Consensus 447 ~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 447 DMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp ETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999998864
No 34
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=98.54 E-value=4.6e-08 Score=74.50 Aligned_cols=37 Identities=59% Similarity=0.787 Sum_probs=35.4
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhh
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~ 37 (67)
.||++.|||||+.||+++|++|+++|++|||+|.+|+
T Consensus 483 ~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 483 VDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred cchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 4899999999999999999999999999999999886
No 35
>KOG0361|consensus
Probab=98.43 E-value=2e-07 Score=71.21 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=41.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAP 46 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~ 46 (67)
.|+++.+||||..||.+||..|+|+|+++|.+|..|.+.+...++|
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p 530 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPP 530 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCC
Confidence 3789999999999999999999999999999999999977655433
No 36
>KOG0363|consensus
Probab=97.95 E-value=5.6e-06 Score=63.21 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=40.5
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||.++||+|+++||++.+.+|.|.|.+|||+|.||.+.|...
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r 523 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRER 523 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccc
Confidence 3799999999999999999999999999999999999998864
No 37
>KOG0362|consensus
Probab=97.78 E-value=1.1e-05 Score=62.69 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=40.2
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
|..++||||-+.+|++||+.|+++|.++|++|.||++++...|
T Consensus 484 d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp 526 (537)
T KOG0362|consen 484 DVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGP 526 (537)
T ss_pred ChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCC
Confidence 6789999999999999999999999999999999999887654
No 38
>KOG0364|consensus
Probab=97.36 E-value=0.0001 Score=56.96 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=38.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||.+.+||+|..||.+..++|.+.++++||+|+++.....
T Consensus 483 VDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk 523 (527)
T KOG0364|consen 483 VDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK 523 (527)
T ss_pred eeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence 48999999999999999999999999999999999987654
No 39
>KOG0357|consensus
Probab=97.08 E-value=0.00037 Score=52.56 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=36.8
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
||.+.+|+|++.-|++++..|+.++.|+|++|+|+....
T Consensus 359 DMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 359 DMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred hhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 899999999999999999999999999999999988753
No 40
>KOG0358|consensus
Probab=96.46 E-value=0.0014 Score=50.45 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=35.5
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.|+++..|+.|++|-.++++.|+|...+||++|||+..
T Consensus 496 tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 496 TNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred hhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 37899999999999999999999999999999999864
No 41
>KOG0360|consensus
Probab=95.53 E-value=0.007 Score=47.35 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=38.3
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
|-+++|+++|.-++...|+.|++++-.+||+|+++.-.|+.+
T Consensus 499 dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~ 540 (545)
T KOG0360|consen 499 DNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQ 540 (545)
T ss_pred cceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccc
Confidence 567899999999999999999999999999999999877654
No 42
>KOG0359|consensus
Probab=88.96 E-value=0.44 Score=37.34 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=33.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 4 KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 4 ~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
..+||||-+.|+++.|.+++-+|+-||-+|.|+.+.
T Consensus 480 ~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG 515 (520)
T KOG0359|consen 480 SRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAG 515 (520)
T ss_pred hhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Confidence 357999999999999999999999999999999774
No 43
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=24.82 E-value=48 Score=19.46 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.2
Q ss_pred cccccCCccchHHHH
Q psy9930 2 AAKKGGIIDPTKVVR 16 (67)
Q Consensus 2 dm~e~GViDP~kV~~ 16 (67)
|+++.|++|+...+.
T Consensus 24 ~L~~~GllDS~~~v~ 38 (73)
T TIGR01688 24 ELFEEGLLDSFGTVQ 38 (73)
T ss_pred HHHHccchhHHHHHH
Confidence 789999999987654
No 44
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=59 Score=19.41 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=20.6
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhc
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTT 31 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt 31 (67)
+|+.-||+||.++.-.-...-+.+.-++-+
T Consensus 21 nmvN~gvl~~e~~d~~~~edLtdiy~mvkk 50 (71)
T COG4840 21 NMVNVGVLDPEKYDNANYEDLTDIYDMVKK 50 (71)
T ss_pred hhhhhhccCHHhcccccHHHHHHHHHHHHH
Confidence 577889999999766555555555555443
No 45
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=21.12 E-value=62 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.8
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHhch
Q psy9930 6 GGIIDPTKVVRTAITDAAGVASLLTTA 32 (67)
Q Consensus 6 ~GViDP~kV~~~aL~~A~~va~~lLt~ 32 (67)
.|.+||+--..|.|++..+++..|--+
T Consensus 137 ~GLVEPLGF~~csLRsk~eA~~aI~aa 163 (272)
T COG4130 137 TGLVEPLGFRVCSLRSKAEAAEAIRAA 163 (272)
T ss_pred cccccccCchhhhhhhHHHHHHHHHHh
Confidence 478999999999999999998776443
No 46
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=20.58 E-value=1.5e+02 Score=17.50 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHh
Q psy9930 7 GIIDPTKVVRTAITDAAGVASLLT 30 (67)
Q Consensus 7 GViDP~kV~~~aL~~A~~va~~lL 30 (67)
|=.+|..+.+.|++...+....++
T Consensus 59 ~~~~P~~al~~a~~~l~~~~~~l~ 82 (83)
T cd07027 59 SGIKPKDALKRAVNKLSKLYEHLG 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 447899999999998887776654
Done!