Query psy9930
Match_columns 67
No_of_seqs 104 out of 1026
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kp8_A Groel protein; chaperon 99.6 4.8E-17 1.6E-21 123.0 2.5 63 1-67 485-547 (547)
2 3ruv_A Chaperonin, CPN; double 99.6 1.2E-16 4.1E-21 120.2 2.4 63 1-67 481-543 (543)
3 1iok_A Chaperonin 60; chaperon 99.6 4.4E-16 1.5E-20 117.6 1.7 59 1-67 487-545 (545)
4 3aq1_B Thermosome subunit; gro 99.5 1E-14 3.4E-19 108.8 3.2 44 1-44 438-481 (500)
5 3rtk_A 60 kDa chaperonin 2; he 99.4 1.4E-13 4.7E-18 104.3 2.9 44 1-44 483-526 (546)
6 1a6d_A Thermosome (alpha subun 99.4 1.2E-13 4E-18 104.0 1.8 42 1-42 484-525 (545)
7 1q3q_A Thermosome alpha subuni 99.3 5.4E-13 1.8E-17 100.4 2.7 43 1-43 487-529 (548)
8 1we3_A CPN60(groel); chaperoni 99.3 1.1E-12 3.6E-17 99.1 2.6 43 1-43 487-529 (543)
9 3p9d_B T-complex protein 1 sub 99.2 3.1E-12 1.1E-16 95.7 1.0 43 1-43 480-522 (527)
10 3p9d_G T-complex protein 1 sub 99.2 6.1E-12 2.1E-16 94.9 2.3 44 1-44 489-532 (550)
11 3p9d_A T-complex protein 1 sub 99.1 1.7E-11 6E-16 92.5 3.3 43 1-43 510-552 (559)
12 3iyg_B T-complex protein 1 sub 99.1 3.2E-11 1.1E-15 90.1 4.0 40 1-40 473-512 (513)
13 3ko1_A Chaperonin; 9-fold symm 99.1 1.6E-11 5.3E-16 92.8 1.6 44 1-44 495-538 (553)
14 1a6d_B Thermosome (beta subuni 99.1 2.7E-11 9.1E-16 91.0 2.0 44 1-44 485-528 (543)
15 3iyg_Q T-complex protein 1 sub 99.1 5.5E-11 1.9E-15 88.7 3.5 38 1-38 474-511 (512)
16 3p9d_C T-complex protein 1 sub 99.1 3.8E-11 1.3E-15 91.6 2.5 41 1-41 548-588 (590)
17 3p9d_E T-complex protein 1 sub 99.0 6.1E-11 2.1E-15 89.6 2.8 41 1-41 520-560 (562)
18 3iyg_H T-complex protein 1 sub 99.0 9.5E-11 3.3E-15 87.7 3.8 39 1-39 476-514 (515)
19 3p9d_F T-complex protein 1 sub 99.0 9.5E-11 3.2E-15 88.1 3.1 41 1-41 499-539 (546)
20 3iyg_E T-complex protein 1 sub 99.0 1.2E-10 4E-15 87.0 3.5 38 1-38 477-514 (515)
21 3iyg_D T-complex protein 1 sub 99.0 9.6E-11 3.3E-15 87.6 2.9 38 1-38 480-517 (518)
22 3iyg_G T-complex protein 1 sub 99.0 1.3E-10 4.3E-15 86.9 3.3 39 1-39 476-514 (515)
23 3iyg_A T-complex protein 1 sub 99.0 1.7E-10 5.6E-15 86.5 3.9 39 1-39 490-528 (529)
24 3iyg_Z T-complex protein 1 sub 99.0 1.7E-10 5.9E-15 86.3 3.7 38 1-38 479-516 (517)
25 3p9d_D T-complex protein 1 sub 99.0 1.1E-10 3.7E-15 87.6 2.1 38 1-38 490-527 (528)
26 3p9d_H T-complex protein 1 sub 98.9 1.2E-11 4.2E-16 93.5 -6.0 43 2-44 511-553 (568)
No 1
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=99.64 E-value=4.8e-17 Score=122.99 Aligned_cols=63 Identities=57% Similarity=0.920 Sum_probs=39.4
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM 67 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 67 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+++ +.+| ++++|+|||||||||
T Consensus 485 ~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 547 (547)
T 1kp8_A 485 GNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDA-ADLG---AAGGMGGMGGMGGMM 547 (547)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC--------------------------
T ss_pred ccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccCC-CCCC---CCCCCCCCCCCCCCC
Confidence 38999999999999999999999999999999999999887542 2232 334454566777876
No 2
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=99.61 E-value=1.2e-16 Score=120.20 Aligned_cols=63 Identities=40% Similarity=0.653 Sum_probs=37.8
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM 67 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 67 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+.+ +.+ +++++|+||+||+|||
T Consensus 481 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~-~~~---~~~~~~~~~~~~~~~~ 543 (543)
T 3ruv_A 481 EDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA-PDM---GDMGGMPGMGGMPGMM 543 (543)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC----------------------------
T ss_pred ccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccCCC-CCC---CCCCCCCCCCCCCCCC
Confidence 38999999999999999999999999999999999999887654 222 2344555566777775
No 3
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=99.57 E-value=4.4e-16 Score=117.61 Aligned_cols=59 Identities=59% Similarity=0.881 Sum_probs=38.6
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGGMM 67 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 67 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|.+++ + .+ +|||||||+|||
T Consensus 487 ~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~-~----~~---~~~~~~~~~~~~ 545 (545)
T 1iok_A 487 GDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPKA-P----AG---GMPDMGGMGGMM 545 (545)
T ss_dssp EEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------
T ss_pred cchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCccCC-C----CC---CCCCCCCCCCCC
Confidence 38999999999999999999999999999999999999876542 2 12 334556677775
No 4
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=99.48 E-value=1e-14 Score=108.76 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=31.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|.+++
T Consensus 438 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~~ 481 (500)
T 3aq1_B 438 VDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQ 481 (500)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred cchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 38999999999999999999999999999999999999876543
No 5
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=99.38 E-value=1.4e-13 Score=104.28 Aligned_cols=44 Identities=43% Similarity=0.637 Sum_probs=32.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||++||++|+|+|++|||+|++|++.|.+++
T Consensus 483 ~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~ 526 (546)
T 3rtk_A 483 EDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEK 526 (546)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred eeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 38999999999999999999999999999999999999887653
No 6
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=99.36 E-value=1.2e-13 Score=104.01 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=35.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKE 42 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~ 42 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|.+
T Consensus 484 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~ 525 (545)
T 1a6d_A 484 GDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKST 525 (545)
T ss_dssp EEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC------
T ss_pred ccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 389999999999999999999999999999999999998765
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=99.31 E-value=5.4e-13 Score=100.43 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=38.5
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|.++
T Consensus 487 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~~ 529 (548)
T 1q3q_A 487 ADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKP 529 (548)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC---
T ss_pred cchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 3899999999999999999999999999999999999987653
No 8
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=99.28 E-value=1.1e-12 Score=99.07 Aligned_cols=43 Identities=40% Similarity=0.706 Sum_probs=39.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|.++
T Consensus 487 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~ 529 (543)
T 1we3_A 487 VDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKK 529 (543)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC-
T ss_pred cccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 3899999999999999999999999999999999999988654
No 9
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=99.18 E-value=3.1e-12 Score=95.75 Aligned_cols=43 Identities=19% Similarity=0.408 Sum_probs=37.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||++||++|+|+|++|||+|++|.+.|.++
T Consensus 480 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~ 522 (527)
T 3p9d_B 480 ADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTA 522 (527)
T ss_dssp CCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccc
Confidence 4899999999999999999999999999999999999987765
No 10
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=99.18 E-value=6.1e-12 Score=94.86 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=40.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+++
T Consensus 489 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~ 532 (550)
T 3p9d_G 489 GDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESA 532 (550)
T ss_dssp CCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC--
T ss_pred cchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCcccc
Confidence 48999999999999999999999999999999999999877653
No 11
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=99.14 E-value=1.7e-11 Score=92.52 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=40.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~ 43 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|+++
T Consensus 510 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~~ 552 (559)
T 3p9d_A 510 VDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPEPP 552 (559)
T ss_dssp EESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCCCC
T ss_pred eehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCccc
Confidence 3899999999999999999999999999999999999987655
No 12
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=99.12 E-value=3.2e-11 Score=90.14 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=38.1
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~ 40 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|
T Consensus 473 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 512 (513)
T 3iyg_B 473 GDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512 (513)
T ss_pred cchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999999865
No 13
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=99.10 E-value=1.6e-11 Score=92.77 Aligned_cols=44 Identities=27% Similarity=0.341 Sum_probs=36.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|.+.|.+.+
T Consensus 495 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~ 538 (553)
T 3ko1_A 495 VDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGG 538 (553)
T ss_dssp EESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC------
T ss_pred hHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhhccC
Confidence 38999999999999999999999999999999999999876543
No 14
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=99.08 E-value=2.7e-11 Score=91.05 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=36.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...|.+.+
T Consensus 485 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~ 528 (543)
T 1a6d_B 485 EDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSS 528 (543)
T ss_dssp EETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC-------
T ss_pred cchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 38999999999999999999999999999999999999876543
No 15
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.07 E-value=5.5e-11 Score=88.72 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=36.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus 474 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~ 511 (512)
T 3iyg_Q 474 KDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMA 511 (512)
T ss_pred cchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHheec
Confidence 48999999999999999999999999999999999975
No 16
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=99.07 E-value=3.8e-11 Score=91.57 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=38.2
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||+++|||||++||++||++|+|+|++|||+|++|...|.
T Consensus 548 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 588 (590)
T 3p9d_C 548 VDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRK 588 (590)
T ss_dssp BCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCCC-
T ss_pred eehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999999999999999999998764
No 17
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=99.05 E-value=6.1e-11 Score=89.62 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=38.0
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||+++|||||++||++||++|+|+|++|||+|++|...+.
T Consensus 520 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~ 560 (562)
T 3p9d_E 520 NDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKD 560 (562)
T ss_dssp CBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC-
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 48999999999999999999999999999999999998654
No 18
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.05 E-value=9.5e-11 Score=87.69 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=36.8
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus 476 ~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_H 476 ADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP 514 (515)
T ss_pred cccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 489999999999999999999999999999999999753
No 19
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=99.03 E-value=9.5e-11 Score=88.11 Aligned_cols=41 Identities=32% Similarity=0.384 Sum_probs=38.4
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~ 41 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...+.
T Consensus 499 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~~ 539 (546)
T 3p9d_F 499 CDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRS 539 (546)
T ss_dssp CCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCS
T ss_pred cchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 48999999999999999999999999999999999988644
No 20
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.03 E-value=1.2e-10 Score=87.03 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=36.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus 477 ~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 477 NDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred cchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 48999999999999999999999999999999999875
No 21
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.02 E-value=9.6e-11 Score=87.63 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=36.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||++||++|+|+|++|||+|+||..
T Consensus 480 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 517 (518)
T 3iyg_D 480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT 517 (518)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEec
Confidence 48999999999999999999999999999999999875
No 22
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.01 E-value=1.3e-10 Score=86.94 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=36.7
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus 476 ~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_G 476 VDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGH 514 (515)
T ss_pred cccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 489999999999999999999999999999999999753
No 23
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.01 E-value=1.7e-10 Score=86.53 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=36.9
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcC
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDI 39 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~ 39 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|...
T Consensus 490 ~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (529)
T 3iyg_A 490 RDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH 528 (529)
T ss_pred cChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Confidence 489999999999999999999999999999999999764
No 24
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=99.00 E-value=1.7e-10 Score=86.31 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=36.2
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|++|+|+|++|||+|++|..
T Consensus 479 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 479 MVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA 516 (517)
T ss_pred cchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999999999999999999999875
No 25
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=98.99 E-value=1.1e-10 Score=87.61 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=36.3
Q ss_pred CcccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhc
Q psy9930 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38 (67)
Q Consensus 1 ~dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~ 38 (67)
.||+++|||||++||+++|++|+|+|++|||+|+||..
T Consensus 490 ~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 527 (528)
T 3p9d_D 490 TNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFS 527 (528)
T ss_dssp CCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBC
T ss_pred cchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheec
Confidence 48999999999999999999999999999999999875
No 26
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=98.90 E-value=1.2e-11 Score=93.47 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHhchhhhhhcCCCCCC
Q psy9930 2 AAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEA 44 (67)
Q Consensus 2 dm~e~GViDP~kV~~~aL~~A~~va~~lLt~d~vi~~~~~~~~ 44 (67)
||+++|||||++||+++|++|+|+|++|||+|++|++.|...+
T Consensus 511 d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~ 553 (568)
T 3p9d_H 511 DIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGP 553 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEECBCCC---------------
T ss_pred ChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCC
Confidence 7999999999999999999999999999999999999876543
Done!