RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9930
(67 letters)
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 81.3 bits (202), Expect = 4e-20
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGM 57
+ GIIDPTKV R+A+ +AA VA LL T EAVV D P+++AA G GGMGGM
Sbjct: 490 EAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGGM 542
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 70.2 bits (173), Expect = 3e-16
Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGM 60
GIIDP KV R+A+ +AA VA LL T EA+V D P+EE P GGMGGMGGMG M
Sbjct: 491 GIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDPP--GGMGGMGGMGHM 542
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 69.9 bits (172), Expect = 4e-16
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGM 54
GIIDPTKVVR+A+ DAA VASL+ T EA + D+PKE+ M
Sbjct: 508 GIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSAAPPM 555
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 69.0 bits (169), Expect = 9e-16
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMG 58
+ GIIDP KV RTA+ DAA +A+LL T EA+V + PK+ AA A G GMGGMG
Sbjct: 490 EAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGGMG 543
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 67.9 bits (166), Expect = 2e-15
Identities = 36/52 (69%), Positives = 42/52 (80%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMG 58
GIIDP KVVRTA+ DAA VA LL T EA+V ++PK++AAPAM GGMGGMG
Sbjct: 493 GIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMG 544
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 60.5 bits (148), Expect = 9e-13
Identities = 23/32 (71%), Positives = 27/32 (84%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTD 38
GIIDPTKVVR+A+ +AA VASLL T EA+V D
Sbjct: 489 GIIDPTKVVRSALQNAASVASLLLTTEALVVD 520
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 57.1 bits (138), Expect = 2e-11
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMG 55
G+IDP KVVRTA+ +AA VA LL T EA+V + PK+E AP GGM
Sbjct: 492 GVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGMD 540
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 55.8 bits (134), Expect = 4e-11
Identities = 35/52 (67%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAA-PAMGGMGGMGGM 57
GIIDPTKVVRTAI +AA VA+LL T EA+V ++PK+ A PAM GGMGGM
Sbjct: 493 GIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGMGGM 544
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 55.0 bits (133), Expect = 6e-11
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 5 KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
+ GIIDPTKV R+A+ +AA +A LL T EAVV D P+
Sbjct: 488 EAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKPE 524
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 50.3 bits (121), Expect = 3e-09
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 4 KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMG 49
+ GIIDP KV R+A+ +AA A LL T + ++ P+E+ G
Sbjct: 479 IEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKKPAPPG 524
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 47.2 bits (112), Expect = 4e-08
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMG 55
MAA GIIDPTKVVR + AA VA T++ VV +I + E PA M G
Sbjct: 546 MAA---GIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPMDNSG 597
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 43.2 bits (103), Expect = 1e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 3 AKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVT 37
K+ GIIDP KV R A+ A ASL+ T + ++
Sbjct: 430 MKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 41.4 bits (98), Expect = 5e-06
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 4 KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
K+ GIIDP KV R+A+ A VASL+ T + ++ P
Sbjct: 445 KEAGIIDPLKVKRSALKSAVEVASLILTIDQIIKAKP 481
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 40.1 bits (94), Expect = 1e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPKEE 43
GIIDP KV R+A+ +AA +AS++ T E ++ D +
Sbjct: 493 GIIDPAKVTRSALQNAASIASMILTTECIIVDKKESS 529
>gnl|CDD|223615 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 451
Score = 28.3 bits (64), Expect = 0.21
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 42 EEAAPAMGGMGGMGGMGGMGGMGGMM 67
++ M M G GG G M M
Sbjct: 419 KQMKKMMKKMSGGGGKGKMMRGMKGM 444
Score = 26.0 bits (58), Expect = 1.4
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 48 MGGMGGMGG-MGGMGGMGGMM 67
M G GG G M GM GM G
Sbjct: 428 MSGGGGKGKMMRGMKGMMGGK 448
>gnl|CDD|180905 PRK07246, PRK07246, bifunctional ATP-dependent DNA helicase/DNA
polymerase III subunit epsilon; Validated.
Length = 820
Score = 28.1 bits (63), Expect = 0.24
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 17 TAITDAAGVASLLTTAEAVVTDIPKE 42
TAI DA A L + +PKE
Sbjct: 151 TAIADARATAELFLKLLQKIESLPKE 176
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 27.3 bits (61), Expect = 0.52
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 50 GMGGMGGMGGMGGMGG 65
G+ G G MG MGG
Sbjct: 71 GVSGAAGFPDMGDMGG 86
Score = 25.0 bits (55), Expect = 3.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 48 MGGMGGMGGMGGMGG 62
+ G G MG MGG
Sbjct: 72 VSGAAGFPDMGDMGG 86
>gnl|CDD|225659 COG3117, COG3117, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 188
Score = 26.6 bits (59), Expect = 0.70
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 1 MAAKKGGIIDPTKVVRTAITDAAGVASLLTTAEAVV----TDIPKEEAAPAMGGMGGMGG 56
K G + VV A+T +G LTT A V D E+ GG
Sbjct: 101 KLTKDGKLYLLGDVVVVALTPDSGQLQRLTTESAQVNLKTQDAQTEDPVTLYGGQFVSTA 160
Query: 57 MG 58
G
Sbjct: 161 NG 162
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 26.0 bits (57), Expect = 1.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 33 EAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGG 65
+ GG GG GG GG GG GG
Sbjct: 69 ALLSASAISGGGGGGGGGFGGFGGGGGGGGGGG 101
Score = 24.0 bits (52), Expect = 7.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 18 AITDAAGVASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGGMGG 65
A + A ++ L AV + GG GG GG GG GG GG
Sbjct: 51 ASSSATSSSASLVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGG 98
>gnl|CDD|217686 pfam03713, DUF305, Domain of unknown function (DUF305). Domain
found in small family of bacterial secreted proteins
with no known function. Also found in Paramecium
bursaria chlorella virus 1. This domain is short and
found in one or two copies. The domain has a conserved
HH motif that may be functionally important. This
domain belongs to the ferritin superfamily. It contains
two sequence similar repeats each of which is composed
of two alpha helices.
Length = 150
Score = 25.7 bits (57), Expect = 1.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 46 PAMGGMGGMGGMGGMGGMGGMM 67
P G G G G M GM GM
Sbjct: 60 PPPSGSGHGGMGGEMAGMPGMA 81
>gnl|CDD|213664 TIGR01909, C_GCAxxG_C_C, C_GCAxxG_C_C family probable redox
protein. This model represents a putative redox-active
protein of about 140 residues, with four perfectly
conserved Cys residues. It includes a CGAXXG motif.
Most members are found within one or two loci of
transporter or oxidoreductase genes. A member from
Geobacter sulfurreducens, located in a molybdenum
transporter operon, has a TAT (twin-arginine
translocation) signal sequence for Sec-independent
transport across the plasma membrane, a hallmark of
bound prosthetic groups such as FeS clusters.
Length = 120
Score = 25.6 bits (56), Expect = 1.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 26 ASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGG 62
A E DIP+E A G GG+ G G + G
Sbjct: 6 AIFAALREEFNLDIPEEAVNMASGFGGGVAGSGHICG 42
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 25.4 bits (56), Expect = 2.7
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 46 PAMGGMGGMGGMGGM--GGMGGMM 67
AM GM MG M G M M
Sbjct: 375 QAMAGMDMDHMMGHMGHGNMDHMN 398
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 25.0 bits (55), Expect = 3.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 49 GGMGGMGGMGGMGGMGG 65
GG GG GG G GG GG
Sbjct: 79 GGAGGFGGFDGSGGFGG 95
>gnl|CDD|131883 TIGR02836, spore_IV_A, stage IV sporulation protein A. A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is designated stage IV
sporulation protein A. It acts in the mother cell
compartment and plays a role in spore coat morphogenesis
[Cellular processes, Sporulation and germination].
Length = 492
Score = 24.8 bits (54), Expect = 3.9
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 16 RTAITDAAGVASLLTTAEAVVTDIPKEEAAPA 47
R I + + + ++TT + +TDIP+E+ A
Sbjct: 138 RKVIQEHSTIGVVVTT-DGTITDIPREDYVEA 168
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 24.3 bits (54), Expect = 5.1
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 42 EEAAPAMGGMGGMGGMGGMGG-MGGMM 67
EAAP M M G GM M + M
Sbjct: 178 AEAAPMMEIM-GPPGMEEMTIQLQDMF 203
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 24.2 bits (52), Expect = 6.7
Identities = 4/24 (16%), Positives = 4/24 (16%)
Query: 44 AAPAMGGMGGMGGMGGMGGMGGMM 67
G M G M
Sbjct: 279 NQNNGGQMTPSANNGNMNNQSREN 302
>gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain
insert. Peptidase family M28 (also called
aminopeptidase Y family), uncharacterized subfamily. The
M28 family contains aminopeptidases as well as
carboxypeptidases. They have co-catalytic zinc ions;
each zinc ion is tetrahedrally co-ordinated, with three
amino acid ligands plus activated water; one aspartate
residue binds both metal ions. This subfamily is
composed of uncharacterized proteins, many of which
contain a protease-associated (PA) domain insert which
may participate in substrate binding and/or promote
conformational changes, influencing the stability and
accessibility of the site to substrate. Some proteins in
this subfamily are also associated with the PDZ domain,
a widespread protein module that has been recruited to
serve multiple functions during the course of evolution.
Length = 254
Score = 23.7 bits (52), Expect = 8.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 7 GIIDPTKVVRTAITDAAGVASLLTTAEA 34
G ++ A +A+G A++L A A
Sbjct: 78 GEDGNGEIYNGADDNASGTAAVLELARA 105
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 23.8 bits (52), Expect = 8.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 22 AAGVASLLTTAEAVVTDI-PKEEAAPAMGGMGGMGGMGGMGGM 63
A+G+ L T A VT + E AA + G+G + G
Sbjct: 115 ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGP 157
>gnl|CDD|193537 cd05661, M28_like_PA_2, M28 Zn-Peptidases containing a PA domain
insert. Peptidase family M28 (also called
aminopeptidase Y family), uncharacterized subfamily. The
M28 family contains aminopeptidases as well as
carboxypeptidases. They have co-catalytic zinc ions;
each zinc ion is tetrahedrally co-ordinated, with three
amino acid ligands plus activated water; one aspartate
residue binds both metal ions. This subfamily is
composed of uncharacterized proteins containing a
protease-associated (PA) domain insert which may
participate in substrate binding and/or promote
conformational changes, influencing the stability and
accessibility of the site to substrate.
Length = 305
Score = 23.8 bits (52), Expect = 9.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 18 AITDAAGVASLLTTAEAV 35
A+ +A+GVA+LL A A
Sbjct: 109 AMDNASGVATLLEVARAF 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.373
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,546,065
Number of extensions: 279084
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 108
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)