RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9930
         (67 letters)



>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 252

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           G+IDP KVVRTA+ DAA VA LL T EA++ + P
Sbjct: 219 GVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP 252


>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia
           coli [TaxId: 562]}
          Length = 252

 Score = 45.1 bits (106), Expect = 5e-08
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 7   GIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIPK 41
           GI+DPTKV R+A+  AA VA L+ T E +VTD+PK
Sbjct: 218 GILDPTKVTRSALQYAASVAGLMITTECMVTDLPK 252


>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
           {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 180

 Score = 42.5 bits (99), Expect = 3e-07
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAE 33
             G+ DP KV R+A+ +AA +A L  T E
Sbjct: 152 AAGVADPVKVTRSALQNAASIAGLFLTTE 180


>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
           thermophilus [TaxId: 274]}
          Length = 255

 Score = 42.2 bits (98), Expect = 6e-07
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 5   KGGIIDPTKVVRTAITDAAGVASLLTTAEAVVTDIP 40
           + GI+DP KV R+A+ +AA + +L+ T EAVV + P
Sbjct: 220 EAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP 255


>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
           2303]}
          Length = 245

 Score = 29.3 bits (65), Expect = 0.023
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVV 36
           K  G++DP +V   A+  A  VA+++   + V+
Sbjct: 213 KAKGVVDPLRVKTHALESAVEVATMILRIDDVI 245


>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
           {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
           79679]}
          Length = 258

 Score = 28.6 bits (63), Expect = 0.033
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVV 36
            + GII+P +V + AI  A+  A ++   + V+
Sbjct: 222 LEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 254


>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, beta chain [TaxId:
           2303]}
          Length = 243

 Score = 28.5 bits (63), Expect = 0.035
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 4   KKGGIIDPTKVVRTAITDAAGVASLLTTAEAVV 36
            K G+I+P +V + AI  A   A ++   + V+
Sbjct: 210 VKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 242


>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
          {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 240

 Score = 22.2 bits (47), Expect = 6.5
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 26 ASLLTTAEAVVTDIPKEEAAPAMGGMGGMGGMGGMGG 62
          + +    E       +   A      GG+   G + G
Sbjct: 44 SIVGLMGEKYGAPYNQFPFAMLEANKGGISDWGTICG 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,839
Number of extensions: 8897
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 25
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.9 bits)