Query psy9931
Match_columns 237
No_of_seqs 4 out of 6
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 23:18:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bh7_B Protein XRP2; protein-p 24.2 3.7E+02 0.013 23.7 9.6 30 112-145 101-131 (352)
2 3bh7_B Protein XRP2; protein-p 15.6 5.8E+02 0.02 22.4 9.4 31 83-114 83-113 (352)
3 3jwd_A HIV-1 GP120 envelope gl 6.0 1.3E+02 0.0045 27.7 0.3 8 12-19 89-96 (379)
4 4dkp_A Clade A/E 93TH057 HIV-1 5.9 1.3E+02 0.0046 27.4 0.3 8 12-19 76-83 (353)
5 4cpa_I Metallocarboxypeptidase 4.6 2.2E+02 0.0075 18.9 0.6 10 161-170 7-16 (38)
6 1k4n_A Protein EC4020, protein 3.8 3.1E+02 0.01 23.0 1.0 11 169-179 171-181 (192)
7 3m1f_V VOPL, putative uncharac 3.3 1.1E+02 0.0037 19.6 -1.7 10 179-188 13-22 (31)
8 2yuh_A Tubulin-specific chaper 2.9 1.7E+03 0.059 17.1 6.1 10 136-145 91-100 (179)
9 1rz3_A Hypothetical protein rb 2.5 4.4E+02 0.015 19.3 0.5 7 149-155 192-198 (201)
10 2grj_A Dephospho-COA kinase; T 2.4 4.5E+02 0.015 20.0 0.5 15 144-158 157-171 (192)
No 1
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=24.20 E-value=3.7e+02 Score=23.68 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=15.6
Q ss_pred EEeeeeeeeeEEEeeecceeE-EeeeeccceEEEe
Q psy9931 112 WVKLSPTSFCYVKLRPTSFCC-VKLRPTSFCCVKL 145 (237)
Q Consensus 112 sVhLs~cs~CsVhL~~~S~Cs-VhL~~cS~CsVhL 145 (237)
+++++.|..|.+.+ +|- +.++-|..|.++|
T Consensus 101 sv~I~~C~n~~i~v----ac~QlRih~c~n~~~yL 131 (352)
T 3bh7_B 101 SVFFRNCRDCKCTL----ACQQFRVRDCRKLEVFL 131 (352)
T ss_dssp EEEEESCEEEEEEE----EEEEEEEESCEEEEEEE
T ss_pred eEEEEcCCCcEEEE----EcceEEEecccCcEEEE
Confidence 35555555555444 222 5555566666666
No 2
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=15.57 E-value=5.8e+02 Score=22.44 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=12.0
Q ss_pred EeeecceeeEEeeecceeeEEeeeeeeeeEEe
Q psy9931 83 VKLSPTSFCYVKLSPTSFCCVKLRPTSFCWVK 114 (237)
Q Consensus 83 VhLs~cS~CsVhLs~cS~CsVkL~~cS~CsVh 114 (237)
|++.-|..|.+-+.|. .=+|.++.|..|-+.
T Consensus 83 l~I~~c~nC~Iv~GpV-~gsv~I~~C~n~~i~ 113 (352)
T 3bh7_B 83 VTIDDCTNCIIFLGPV-KGSVFFRNCRDCKCT 113 (352)
T ss_dssp EEEESCBSCEEEEEEE-EEEEEEESCEEEEEE
T ss_pred EEEecCCCCEEEEccc-cceEEEEcCCCcEEE
Confidence 3344444444333332 123444444444433
No 3
>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular motion, protein architecture, R triggered entry, type 1 fusion protein, cell membrane, DISU bond; HET: YCM NAG; 2.61A {Human immunodeficiency virus 1} PDB: 1meq_A
Probab=5.97 E-value=1.3e+02 Score=27.69 Aligned_cols=8 Identities=63% Similarity=0.962 Sum_probs=5.4
Q ss_pred EEEecCce
Q psy9931 12 CVKLSPTS 19 (237)
Q Consensus 12 ~~kl~pts 19 (237)
||||+|||
T Consensus 89 CVKLTPtS 96 (379)
T 3jwd_A 89 CVKLTGGS 96 (379)
T ss_dssp SEEEETTE
T ss_pred eecCcCCc
Confidence 67777755
No 4
>4dkp_A Clade A/E 93TH057 HIV-1 GP120 core; CD4 mimic, AWS-I-50, viral protein-I complex; HET: NAG EPE 0LL; 1.80A {Human immunodeficiency virus type 1} PDB: 4dko_A* 4dkq_A* 4dkr_A* 3se8_G* 3ngb_G* 3se9_G* 3tgt_A* 3u7y_G* 3rjq_A* 3tgs_A* 3tgr_A* 3tih_A 3tgq_A* 3jwo_A* 2qad_A* 3hi1_G* 3dnl_B 3dnn_B 3dno_B 3dnl_C ...
Probab=5.91 E-value=1.3e+02 Score=27.44 Aligned_cols=8 Identities=63% Similarity=0.962 Sum_probs=4.8
Q ss_pred EEEecCce
Q psy9931 12 CVKLSPTS 19 (237)
Q Consensus 12 ~~kl~pts 19 (237)
||||+|||
T Consensus 76 CVkLTPtS 83 (353)
T 4dkp_A 76 CVKLTGGS 83 (353)
T ss_dssp SEEEETTE
T ss_pred eecCcCCc
Confidence 56666654
No 5
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=4.63 E-value=2.2e+02 Score=18.90 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=7.6
Q ss_pred ccCCCCCcce
Q psy9931 161 SCDKPCSTSF 170 (237)
Q Consensus 161 ~~~~~~~~~~ 170 (237)
.|.|||+|..
T Consensus 7 ~C~KPC~T~D 16 (38)
T 4cpa_I 7 ICNKPCKTHD 16 (38)
T ss_dssp TTTCBCSSSS
T ss_pred ccCCCccCcc
Confidence 4889998854
No 6
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=3.78 E-value=3.1e+02 Score=22.98 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=7.6
Q ss_pred ceeEeEeeeee
Q psy9931 169 SFCCIKVHPII 179 (237)
Q Consensus 169 ~~~~~~~~~~~ 179 (237)
..-|||+||--
T Consensus 171 ~~i~IKfHP~s 181 (192)
T 1k4n_A 171 GKTTIKFHPWS 181 (192)
T ss_dssp SSCEEEEESSC
T ss_pred CCEEEEECCcC
Confidence 34578999853
No 7
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=3.35 E-value=1.1e+02 Score=19.64 Aligned_cols=10 Identities=60% Similarity=0.587 Sum_probs=5.4
Q ss_pred eeEEEEeeee
Q psy9931 179 IFQCVKLRST 188 (237)
Q Consensus 179 ~~~~~kl~~t 188 (237)
|-|-||||++
T Consensus 13 IRqGVkLr~~ 22 (31)
T 3m1f_V 13 IRQGVKLKSA 22 (31)
T ss_dssp HHHCCCCBCC
T ss_pred HHhhhccccC
Confidence 4455555554
No 8
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=2.93 E-value=1.7e+03 Score=17.06 Aligned_cols=10 Identities=20% Similarity=0.009 Sum_probs=3.9
Q ss_pred eeccceEEEe
Q psy9931 136 RPTSFCCVKL 145 (237)
Q Consensus 136 ~~cS~CsVhL 145 (237)
.-|.-|.+.|
T Consensus 91 ~~~~~~~~yL 100 (179)
T 2yuh_A 91 HSTKDTRIFL 100 (179)
T ss_dssp ESCBSCEEEC
T ss_pred eccCCeEEEE
Confidence 3333344433
No 9
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=2.48 E-value=4.4e+02 Score=19.27 Aligned_cols=7 Identities=57% Similarity=0.572 Sum_probs=3.2
Q ss_pred eeceeee
Q psy9931 149 CADYVVD 155 (237)
Q Consensus 149 ~~~~~~~ 155 (237)
-||+|+|
T Consensus 192 ~AD~vI~ 198 (201)
T 1rz3_A 192 RADVVFD 198 (201)
T ss_dssp HCSEEEC
T ss_pred hCcEEec
Confidence 3444444
No 10
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=2.41 E-value=4.5e+02 Score=19.99 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=11.0
Q ss_pred EeEeeeeceeeecCC
Q psy9931 144 KLRIKCADYVVDKSS 158 (237)
Q Consensus 144 hL~~~~~~~~~~~~~ 158 (237)
+.|.+-||||+|.+.
T Consensus 157 ~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 157 QEDIVPQGIVVANNS 171 (192)
T ss_dssp CTTCCCCSEEEECSS
T ss_pred hhHHhcCCEEEECCC
Confidence 346678999998663
Done!