BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9932
(80 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZRH|A Chain A, Crystal Structure Of Human Heparan Sulfate Glucosamine
3-O- Sulfotransferase 1 In Complex With Pap
Length = 274
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 58/79 (73%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP I IV+GDRLI DP PE+Q++ERFL L P IN NFYFN TKGFYCL+D+
Sbjct: 170 WLRFFPLRHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGR 229
Query: 62 ERCLRESKGRKHVRVHPKV 80
+RCL ESKGR H +V PK+
Sbjct: 230 DRCLHESKGRAHPQVDPKL 248
>pdb|1VKJ|A Chain A, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|B Chain B, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|C Chain C, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
Length = 285
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 58/79 (73%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP I IV+GDRLI DP PE+Q++ERFL L P IN NFYFN TKGFYCL+D+
Sbjct: 181 WLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK 240
Query: 62 ERCLRESKGRKHVRVHPKV 80
+RCL ESKGR H +V PK+
Sbjct: 241 DRCLHESKGRAHPQVDPKL 259
>pdb|3UAN|A Chain A, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
pdb|3UAN|B Chain B, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
Length = 269
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 58/79 (73%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP I IV+GDRLI DP PE+Q++ERFL L P IN NFYFN TKGFYCL+D+
Sbjct: 165 WLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK 224
Query: 62 ERCLRESKGRKHVRVHPKV 80
+RCL ESKGR H +V PK+
Sbjct: 225 DRCLHESKGRAHPQVDPKL 243
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP EQ +V+GDRLI +P+PELQ +E+FLNL P I+ N YFN T+GFYCL+ N +
Sbjct: 175 WLKYFPIEQFHVVDGDRLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNEI 234
Query: 62 -ERCLRESKGRKHVRVHPKV 80
+CL SKGR H V P V
Sbjct: 235 FNKCLAGSKGRIHPEVDPSV 254
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 71.6 bits (174), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 6 FPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD---NSME 62
FP Q+L V+G+RLI DP EL R++ FL L+ I +FYFN TKGF CLK +S
Sbjct: 168 FPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRP 227
Query: 63 RCLRESKGRKHVRVHPKV 80
CL ++KGR H + +V
Sbjct: 228 HCLGKTKGRTHPEIDREV 245
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 6 FPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD---NSME 62
FP Q+L V+G+RLI DP EL R++ FL L+ I +FYFN TKGF CLK +S
Sbjct: 167 FPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEGSSRP 226
Query: 63 RCLRESKGRKHVRVHPKV 80
CL ++KGR H + +V
Sbjct: 227 HCLGKTKGRTHPEIDREV 244
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 LTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHIN-HDNFYFNHTKGFYC-LKDNS 60
L+ + QIL+++G L +P + +++FL + I+ H F+ KGF+C L +
Sbjct: 208 LSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGG 267
Query: 61 MERCLRESKGRKH 73
+CL +SKGRK+
Sbjct: 268 KTKCLGKSKGRKY 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,546,837
Number of Sequences: 62578
Number of extensions: 94433
Number of successful extensions: 380
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)