Query psy9932
Match_columns 80
No_of_seqs 107 out of 352
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:19:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3704|consensus 100.0 2.9E-30 6.2E-35 186.9 3.1 80 1-80 252-334 (360)
2 KOG3703|consensus 99.9 6.2E-25 1.3E-29 170.5 5.0 79 1-79 754-834 (873)
3 PF00685 Sulfotransfer_1: Sulf 98.3 5.5E-07 1.2E-11 61.2 3.0 36 2-37 162-197 (267)
4 PLN02164 sulfotransferase 97.9 6.2E-06 1.3E-10 61.4 2.6 37 2-38 223-261 (346)
5 PF09037 Sulphotransf: Stf0 su 97.4 3.9E-05 8.4E-10 54.6 0.4 39 2-40 179-219 (245)
6 KOG1584|consensus 97.3 0.00024 5.2E-09 52.3 3.4 32 7-38 186-217 (297)
7 KOG3988|consensus 92.5 0.049 1.1E-06 40.8 0.7 32 7-38 231-262 (378)
8 PF13469 Sulfotransfer_3: Sulf 83.8 0.8 1.7E-05 29.0 1.8 21 15-35 191-211 (215)
9 COG4424 Uncharacterized protei 78.4 1.5 3.2E-05 31.6 1.7 29 14-42 192-220 (250)
10 PF15162 DUF4580: Domain of un 71.0 4.3 9.3E-05 27.7 2.4 28 8-35 74-101 (162)
11 PF12105 SpoU_methylas_C: SpoU 63.0 2.4 5.2E-05 24.2 0.0 14 66-79 35-48 (57)
12 PF06490 FleQ: Flagellar regul 59.1 7.2 0.00016 24.2 1.7 28 10-40 1-28 (109)
13 PF11212 DUF2999: Protein of u 56.5 8.6 0.00019 23.2 1.6 21 17-38 23-43 (82)
14 PLN02293 adenine phosphoribosy 49.6 27 0.00058 23.8 3.4 26 1-26 22-47 (187)
15 PRK09767 hypothetical protein; 44.6 26 0.00056 22.4 2.6 28 10-37 86-113 (117)
16 PF07706 TAT_ubiq: Aminotransf 42.7 17 0.00037 19.3 1.2 14 60-73 26-39 (40)
17 cd01038 Endonuclease_DUF559 Do 41.3 37 0.0008 20.8 2.8 25 10-34 83-107 (108)
18 PF06323 Phage_antiter_Q: Phag 40.2 40 0.00087 24.2 3.2 50 28-78 26-82 (230)
19 PF00549 Ligase_CoA: CoA-ligas 39.5 16 0.00034 24.5 1.0 13 67-79 47-59 (153)
20 PF10364 NKWYS: Putative capsu 39.2 48 0.001 22.1 3.3 29 10-43 69-97 (141)
21 PF13704 Glyco_tranf_2_4: Glyc 38.3 7 0.00015 22.9 -0.8 28 6-34 70-97 (97)
22 COG4918 Uncharacterized protei 36.9 39 0.00084 21.7 2.4 33 24-58 7-39 (114)
23 KOG4319|consensus 36.7 16 0.00034 21.7 0.6 20 54-75 14-34 (70)
24 PF04480 DUF559: Protein of un 35.3 40 0.00087 20.8 2.3 25 10-34 83-107 (108)
25 COG2877 KdsA 3-deoxy-D-manno-o 34.4 28 0.00061 25.6 1.7 38 13-50 26-63 (279)
26 smart00530 HTH_XRE Helix-turn- 30.4 49 0.0011 15.7 1.8 16 23-38 38-53 (56)
27 PF01712 dNK: Deoxynucleoside 30.0 11 0.00023 24.4 -1.0 31 1-31 111-143 (146)
28 KOG4023|consensus 29.3 33 0.00071 21.9 1.2 24 15-40 79-102 (108)
29 PF13443 HTH_26: Cro/C1-type H 28.1 38 0.00081 18.2 1.2 16 23-38 39-54 (63)
30 PRK12903 secA preprotein trans 27.3 64 0.0014 27.7 2.8 36 5-40 116-152 (925)
31 TIGR02055 APS_reductase thiore 26.4 82 0.0018 21.2 2.8 35 4-38 14-48 (191)
32 PF05708 DUF830: Orthopoxvirus 26.0 37 0.00079 21.6 1.0 46 8-57 65-112 (158)
33 TIGR01250 pro_imino_pep_2 prol 25.7 56 0.0012 21.4 1.9 22 10-32 233-254 (288)
34 smart00836 DALR_1 DALR anticod 25.6 52 0.0011 20.0 1.6 29 10-38 81-118 (122)
35 PRK10030 hypothetical protein; 25.3 1.1E+02 0.0025 20.9 3.4 46 8-57 83-130 (197)
36 PRK11081 tRNA guanosine-2'-O-m 25.2 35 0.00077 24.1 0.9 13 67-79 200-212 (229)
37 PF02589 DUF162: Uncharacteris 24.7 95 0.0021 20.4 2.9 31 2-32 113-143 (189)
38 PF07517 SecA_DEAD: SecA DEAD- 24.6 77 0.0017 23.0 2.5 36 8-43 118-154 (266)
39 PF04472 DUF552: Protein of un 24.3 62 0.0013 18.5 1.7 24 8-34 21-44 (73)
40 PF10653 Phage-A118_gp45: Prot 24.3 51 0.0011 18.7 1.2 23 4-26 10-32 (62)
41 KOG1349|consensus 24.2 50 0.0011 24.6 1.5 18 6-23 61-78 (309)
42 PF11248 DUF3046: Protein of u 24.1 85 0.0018 18.1 2.2 18 21-38 44-61 (63)
43 KOG1387|consensus 22.9 1.4E+02 0.0031 23.4 3.8 37 5-44 73-109 (465)
44 PRK10838 spr outer membrane li 22.8 1E+02 0.0022 21.3 2.8 29 23-56 67-95 (190)
45 PF01429 MBD: Methyl-CpG bindi 22.2 1E+02 0.0022 17.8 2.4 26 25-50 44-72 (77)
46 PF02604 PhdYeFM_antitox: Anti 21.7 1.1E+02 0.0024 16.9 2.4 21 12-32 2-22 (75)
47 PF01650 Peptidase_C13: Peptid 21.4 60 0.0013 23.2 1.5 20 6-25 33-52 (256)
48 PF08120 Toxin_32: Tamulustoxi 21.1 53 0.0011 16.5 0.8 19 54-72 10-30 (35)
49 PF06953 ArsD: Arsenical resis 21.1 62 0.0014 20.9 1.4 28 11-38 75-102 (123)
50 TIGR00434 cysH phosophoadenyly 21.0 1.2E+02 0.0025 20.5 2.8 34 5-38 36-69 (212)
51 PF15502 MPLKIP: M-phase-speci 21.0 62 0.0013 21.4 1.3 16 17-32 122-137 (151)
52 cd04336 YeaK YeaK is an unchar 20.8 44 0.00094 21.3 0.6 45 14-58 13-60 (153)
53 KOG3552|consensus 20.2 1E+02 0.0022 27.0 2.7 29 4-32 91-119 (1298)
54 PRK03204 haloalkane dehalogena 20.0 81 0.0017 22.0 1.9 16 20-35 271-286 (286)
No 1
>KOG3704|consensus
Probab=99.96 E-value=2.9e-30 Score=186.90 Aligned_cols=80 Identities=53% Similarity=0.908 Sum_probs=76.9
Q ss_pred CcccccCCCCEEEEechhhhhChHHHHHHHHhhcCCCCCCCCCcceecCCCCeecccC---CCCcCcCCCCCCCCCCCCC
Q psy9932 1 MLLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD---NSMERCLRESKGRKHVRVH 77 (80)
Q Consensus 1 rwl~~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~~~~~~~f~~n~~kgf~C~~~---~~~~~Cl~~~KGr~~~~~~ 77 (80)
+||+|||-.|||+|+||.|..||+..|.+||+||||.+.++.++|+||.+|||+|+++ +++++|||+||||+||.||
T Consensus 252 ~WL~yFpL~q~lfVsGerli~dPa~E~~rVqdFLgLkr~it~khfyFnktKGFpClkK~e~ss~prCLgksKgr~hp~id 331 (360)
T KOG3704|consen 252 NWLRYFPLRQILFVSGERLISDPAGELGRVQDFLGLKRVITDKHFYFNKTKGFPCLKKAEDSSRPRCLGKSKGRTHPHID 331 (360)
T ss_pred HHHHhCchhheEEecCceeecCcHHHHHHHHHHhcccceeccceeEEecCCCceeeeccccCCCccccccccCCCCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999996 3789999999999999999
Q ss_pred CCC
Q psy9932 78 PKV 80 (80)
Q Consensus 78 ~~~ 80 (80)
++|
T Consensus 332 p~~ 334 (360)
T KOG3704|consen 332 PEV 334 (360)
T ss_pred HHH
Confidence 875
No 2
>KOG3703|consensus
Probab=99.91 E-value=6.2e-25 Score=170.47 Aligned_cols=79 Identities=33% Similarity=0.693 Sum_probs=74.8
Q ss_pred CcccccCCCCEEEEechhhhhChHHHHHHHHhhcCCCCCCCCC-cceecCCCCeecccCC-CCcCcCCCCCCCCCCCCCC
Q psy9932 1 MLLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHD-NFYFNHTKGFYCLKDN-SMERCLRESKGRKHVRVHP 78 (80)
Q Consensus 1 rwl~~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~~~~~~-~f~~n~~kgf~C~~~~-~~~~Cl~~~KGr~~~~~~~ 78 (80)
||+.|||..|+|||||++|+.+|+.+|+.|++||||.|.++++ .+.|+..|||+|..-. ++++|||+||||+||+||+
T Consensus 754 rWL~y~~~~QlliiDg~qLr~~Pa~vm~~~qkfLgv~p~~~y~~~lrfd~~KGF~CqlleggktkCLGkSKGRkYP~Md~ 833 (873)
T KOG3703|consen 754 RWLTYFPAQQLLIIDGQQLRTNPATVMNELQKFLGVTPELNYSETLRFDPKKGFWCQLLEGGKTKCLGKSKGRKYPEMDE 833 (873)
T ss_pred HHHHhCCcccEEEEccHHhccCcHHHHHHHHHHhCCCCCCChhheeeecCCCceeEeeccCCcccccccccCCcCCCCCh
Confidence 6999999999999999999999999999999999998889997 5789999999998865 6899999999999999998
Q ss_pred C
Q psy9932 79 K 79 (80)
Q Consensus 79 ~ 79 (80)
+
T Consensus 834 ~ 834 (873)
T KOG3703|consen 834 E 834 (873)
T ss_pred H
Confidence 7
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=98.29 E-value=5.5e-07 Score=61.19 Aligned_cols=36 Identities=39% Similarity=0.698 Sum_probs=34.2
Q ss_pred cccccCCCCEEEEechhhhhChHHHHHHHHhhcCCC
Q psy9932 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLE 37 (80)
Q Consensus 2 wl~~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~ 37 (80)
|++.++++|+++|.+|||..||..++++|++|||++
T Consensus 162 ~~~~~~~~~~~~i~YEdl~~dp~~~l~~I~~FLgl~ 197 (267)
T PF00685_consen 162 WLSSFDRDNVLIIRYEDLVADPEKELKRICDFLGLP 197 (267)
T ss_dssp HHHHTTTSTEEEEEHHHHHHSHHHHHHHHHHHTTSS
T ss_pred hhhhhccchhhhhcchhhhhhhhHHHHHHHHHHhhc
Confidence 666788999999999999999999999999999998
No 4
>PLN02164 sulfotransferase
Probab=97.93 E-value=6.2e-06 Score=61.41 Aligned_cols=37 Identities=19% Similarity=0.484 Sum_probs=32.6
Q ss_pred ccccc--CCCCEEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 2 LLTVF--PKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 2 wl~~F--~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
|.+.+ .++|||||.+|||.+||..++++|.+|||++-
T Consensus 223 yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~ 261 (346)
T PLN02164 223 YWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGF 261 (346)
T ss_pred HHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCC
Confidence 45555 56899999999999999999999999999964
No 5
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=97.43 E-value=3.9e-05 Score=54.56 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=33.4
Q ss_pred cccccCCCCE--EEEechhhhhChHHHHHHHHhhcCCCCCC
Q psy9932 2 LLTVFPKEQI--LIVNGDRLIEDPVPELQRIERFLNLEPHI 40 (80)
Q Consensus 2 wl~~F~~~qi--lvl~~e~l~~~P~~~l~~v~~FLgl~~~~ 40 (80)
|.++|.+.+| +.|.+|+|.+||..++++|.+||||++..
T Consensus 179 w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 179 WRNWFARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp HHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred HHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 7788888777 78999999999999999999999997744
No 6
>KOG1584|consensus
Probab=97.31 E-value=0.00024 Score=52.32 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCCEEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 7 PKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 7 ~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
..+|||+|.+|||++||..++.+|.+|||.+.
T Consensus 186 ~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~ 217 (297)
T KOG1584|consen 186 DPKNVLFLKYEDMKADPKGEIKKLAEFLGCPF 217 (297)
T ss_pred CCCceEEEEHHHhhhCHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999999975
No 7
>KOG3988|consensus
Probab=92.54 E-value=0.049 Score=40.76 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCCCEEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 7 PKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 7 ~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
+.+|.+-|-+|+|.-.|.+.|++|.+||+||=
T Consensus 231 g~~~Cl~VyYEqLVlhPe~~mr~Il~FLdipw 262 (378)
T KOG3988|consen 231 GKKKCLKVYYEQLVLHPEEWMRRILKFLDIPW 262 (378)
T ss_pred cccchhHHHHHHHHhCHHHHHHHHHHHhCCCc
Confidence 56788999999999999999999999999974
No 8
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=83.84 E-value=0.8 Score=29.05 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.3
Q ss_pred echhhhhChHHHHHHHHhhcC
Q psy9932 15 NGDRLIEDPVPELQRIERFLN 35 (80)
Q Consensus 15 ~~e~l~~~P~~~l~~v~~FLg 35 (80)
++|+|.++|.++|++|++||.
T Consensus 191 ~yedl~~~p~~~l~~i~~~~~ 211 (215)
T PF13469_consen 191 RYEDLVADPEATLRRICALLE 211 (215)
T ss_dssp EHHHHHHSHHHHHHHHHHC--
T ss_pred CHHHHHHCHHHHHHHHHHhhC
Confidence 349999999999999999533
No 9
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.42 E-value=1.5 Score=31.56 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=25.5
Q ss_pred EechhhhhChHHHHHHHHhhcCCCCCCCC
Q psy9932 14 VNGDRLIEDPVPELQRIERFLNLEPHINH 42 (80)
Q Consensus 14 l~~e~l~~~P~~~l~~v~~FLgl~~~~~~ 42 (80)
|-+|.|.+||+.++..|++.||+++...+
T Consensus 192 iaYe~Lsadp~aava~~~ealgv~~p~a~ 220 (250)
T COG4424 192 IAYEVLSADPTAAVASVLEALGVDPPLAP 220 (250)
T ss_pred HhHHHHccCcHHHHHHHHHHhCCCCCCCc
Confidence 56899999999999999999999985443
No 10
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=70.97 E-value=4.3 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCEEEEechhhhhChHHHHHHHHhhcC
Q psy9932 8 KEQILIVNGDRLIEDPVPELQRIERFLN 35 (80)
Q Consensus 8 ~~qilvl~~e~l~~~P~~~l~~v~~FLg 35 (80)
+.-+|+|++.-.-.+=|+.|.+|++|||
T Consensus 74 rNsflvL~aalhg~~ew~~m~~iqRFLG 101 (162)
T PF15162_consen 74 RNSFLVLSAALHGPEEWKLMFRIQRFLG 101 (162)
T ss_pred CCceEEeehhhcCHHHHHHHHHHHHHhc
Confidence 5678899999998999999999999999
No 11
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=63.02 E-value=2.4 Score=24.15 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q psy9932 66 RESKGRKHVRVHPK 79 (80)
Q Consensus 66 ~~~KGr~~~~~~~~ 79 (80)
-+.||+.||+|+++
T Consensus 35 cr~kg~pYP~Lde~ 48 (57)
T PF12105_consen 35 CRRKGLPYPPLDED 48 (57)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 36799999999875
No 12
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=59.12 E-value=7.2 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred CEEEEechhhhhChHHHHHHHHhhcCCCCCC
Q psy9932 10 QILIVNGDRLIEDPVPELQRIERFLNLEPHI 40 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~FLgl~~~~ 40 (80)
+|||||.+.=++ .-|..|.+|||-....
T Consensus 1 kILvIddd~~R~---~~L~~ILeFlGe~~~~ 28 (109)
T PF06490_consen 1 KILVIDDDAERR---QRLSTILEFLGEQCEA 28 (109)
T ss_pred CEEEECCcHHHH---HhhhhhhhhcCCCeEE
Confidence 589999886654 4678899999998744
No 13
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=56.53 E-value=8.6 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=18.2
Q ss_pred hhhhhChHHHHHHHHhhcCCCC
Q psy9932 17 DRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 17 e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
..|..||..+|..|.+ ||+|+
T Consensus 23 q~lT~NPl~AMa~i~q-LGip~ 43 (82)
T PF11212_consen 23 QALTQNPLAAMATIQQ-LGIPQ 43 (82)
T ss_pred HHHhhCHHHHHHHHHH-cCCCH
Confidence 4678999999999988 89987
No 14
>PLN02293 adenine phosphoribosyltransferase
Probab=49.56 E-value=27 Score=23.83 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.5
Q ss_pred CcccccCCCCEEEEechhhhhChHHH
Q psy9932 1 MLLTVFPKEQILIVNGDRLIEDPVPE 26 (80)
Q Consensus 1 rwl~~F~~~qilvl~~e~l~~~P~~~ 26 (80)
||..-||...|++.|-..+..+|...
T Consensus 22 ~~~~~~p~~gi~f~D~~~l~~~p~~~ 47 (187)
T PLN02293 22 RVVPDFPKPGIMFQDITTLLLDPKAF 47 (187)
T ss_pred ccCCCCCcCCcEEEECHHHhhCHHHH
Confidence 68899999999999999999999653
No 15
>PRK09767 hypothetical protein; Provisional
Probab=44.65 E-value=26 Score=22.38 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=23.9
Q ss_pred CEEEEechhhhhChHHHHHHHHhhcCCC
Q psy9932 10 QILIVNGDRLIEDPVPELQRIERFLNLE 37 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~FLgl~ 37 (80)
.+|-+..+++..||..+++.|...|+-.
T Consensus 86 ~VlRf~n~dV~~~~~~Vl~~I~~~l~~~ 113 (117)
T PRK09767 86 TVLRFWNNEIDCNEEAVLEIILQELNRR 113 (117)
T ss_pred EEEEEEHHHHHhCHHHHHHHHHHHHhcc
Confidence 4667788899999999999999998764
No 16
>PF07706 TAT_ubiq: Aminotransferase ubiquitination site; InterPro: IPR011715 This region contains a probable site of ubiquitination that ensures rapid degradation of tyrosine aminotransferase in rats. The half life of the enzyme in vivo is about 2-4 hours. The enzyme contains at least 2 phosphorylation sites including CAPK at Ser29 and, at the other end of the protein, a casein kinase II site at S*QEECDK. This region of TAT is probably primarily related to regulatory events. Most other transaminases are much more stable and are not phosphorylated.; GO: 0004838 L-tyrosine:2-oxoglutarate aminotransferase activity, 0030170 pyridoxal phosphate binding, 0009074 aromatic amino acid family catabolic process
Probab=42.74 E-value=17 Score=19.33 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.3
Q ss_pred CCcCcCCCCCCCCC
Q psy9932 60 SMERCLRESKGRKH 73 (80)
Q Consensus 60 ~~~~Cl~~~KGr~~ 73 (80)
++..+.|+.|||+.
T Consensus 26 Gr~~vpgK~KgRk~ 39 (40)
T PF07706_consen 26 GRSSVPGKMKGRKA 39 (40)
T ss_pred CcccCccccccccC
Confidence 56678899999973
No 17
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=41.27 E-value=37 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.6
Q ss_pred CEEEEechhhhhChHHHHHHHHhhc
Q psy9932 10 QILIVNGDRLIEDPVPELQRIERFL 34 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~FL 34 (80)
.++-+..+++..+|..++.+|.+.|
T Consensus 83 ~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 83 RVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred EEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 4677888999999999999998876
No 18
>PF06323 Phage_antiter_Q: Phage antitermination protein Q; InterPro: IPR010455 This entry is represented by Bacteriophage 82, GpQ. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 82 gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator. GpQ positively regulates expression of the phage late gene operons. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [].
Probab=40.18 E-value=40 Score=24.21 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHhhcCCCCCCCCCcc-----e-ecCCCCe-ecccCCCCcCcCCCCCCCCCCCCCC
Q psy9932 28 QRIERFLNLEPHINHDNF-----Y-FNHTKGF-YCLKDNSMERCLRESKGRKHVRVHP 78 (80)
Q Consensus 28 ~~v~~FLgl~~~~~~~~f-----~-~n~~kgf-~C~~~~~~~~Cl~~~KGr~~~~~~~ 78 (80)
.+++.|++=++ ++.+.| . .++.+|- .++.+++-+-+-.++||++-|+|.|
T Consensus 26 GQL~a~~E~~~-~~~~r~~Rk~~ri~d~~~g~~i~~~~~pv~~~qsrakg~s~plv~p 82 (230)
T PF06323_consen 26 GQLEAFAENAQ-FDTDRYPRKKIRIEDEVTGKMITVDNPPVPGKQSRAKGSSIPLVPP 82 (230)
T ss_pred hhHHHHHhccc-ccccccCCCCeeeEecCCCeEEecCCCCeeeeeeccCCCCCCCCCh
Confidence 34556666555 333322 2 4555554 4444445555557899999999986
No 19
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=39.45 E-value=16 Score=24.45 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCC
Q psy9932 67 ESKGRKHVRVHPK 79 (80)
Q Consensus 67 ~~KGr~~~~~~~~ 79 (80)
-..||+||-||++
T Consensus 47 ~t~GrphPmid~~ 59 (153)
T PF00549_consen 47 FTQGRPHPMIDPS 59 (153)
T ss_dssp SHTTS--TTT-SS
T ss_pred ccccCcCCCcCHH
Confidence 3679999999986
No 20
>PF10364 NKWYS: Putative capsular polysaccharide synthesis protein; InterPro: IPR018831 This entry contains proteins of no known function. They are found predominantly in Vibrio and cyanobacterial species and are characterised by having a NKWYS sequence motif.
Probab=39.20 E-value=48 Score=22.08 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=21.0
Q ss_pred CEEEEechhhhhChHHHHHHHHhhcCCCCCCCCC
Q psy9932 10 QILIVNGDRLIEDPVPELQRIERFLNLEPHINHD 43 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~FLgl~~~~~~~ 43 (80)
.||++..|.|-+ =. ..+.+|||++. ++-.
T Consensus 69 ~lLlir~E~L~~-~~---~~i~efL~i~~-f~l~ 97 (141)
T PF10364_consen 69 ELLLIRCEKLDS-LQ---EAIREFLGIDN-FTLV 97 (141)
T ss_pred EEEEEehhhhhh-HH---HHHHHHhCCCC-ccce
Confidence 368899999987 33 44678999986 5544
No 21
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=38.32 E-value=7 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.543 Sum_probs=18.6
Q ss_pred cCCCCEEEEechhhhhChHHHHHHHHhhc
Q psy9932 6 FPKEQILIVNGDRLIEDPVPELQRIERFL 34 (80)
Q Consensus 6 F~~~qilvl~~e~l~~~P~~~l~~v~~FL 34 (80)
...+=++++|.||+..-|... ..|.+||
T Consensus 70 ~~~dWvl~~D~DEfl~~~~~~-~~l~~~L 97 (97)
T PF13704_consen 70 FDADWVLFLDADEFLVPPPGR-RSLRDFL 97 (97)
T ss_pred CCCCEEEEEeeeEEEecCCCC-CCHHHhC
Confidence 355668899999988777643 4444443
No 22
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.95 E-value=39 Score=21.67 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCcceecCCCCeecccC
Q psy9932 24 VPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD 58 (80)
Q Consensus 24 ~~~l~~v~~FLgl~~~~~~~~f~~n~~kgf~C~~~ 58 (80)
.++.++++.++.+.+.++ .|+.||.+ |.-|...
T Consensus 7 d~a~~~l~~a~d~nl~~~-~hl~ydtE-gc~Ca~S 39 (114)
T COG4918 7 DKAADKLKAAGDVNLVFD-DHLLYDTE-GCACAGS 39 (114)
T ss_pred HHHHHHHHHhhccCcCcc-ceEEEecc-ccccccC
Confidence 356788999999999665 78889888 8888764
No 23
>KOG4319|consensus
Probab=36.73 E-value=16 Score=21.67 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=12.8
Q ss_pred ecccCCCCcCcC-CCCCCCCCCC
Q psy9932 54 YCLKDNSMERCL-RESKGRKHVR 75 (80)
Q Consensus 54 ~C~~~~~~~~Cl-~~~KGr~~~~ 75 (80)
||+. ..+.|- |+||||+..+
T Consensus 14 y~l~--hd~~~gsGrsKgrtksE 34 (70)
T KOG4319|consen 14 YCLR--HDPACGSGRSKGRTKSE 34 (70)
T ss_pred HhcC--cCccccCcccccccHHH
Confidence 5554 345554 6799998653
No 24
>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease. ; PDB: 3R3P_B 3HRL_A.
Probab=35.29 E-value=40 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.2
Q ss_pred CEEEEechhhhhChHHHHHHHHhhc
Q psy9932 10 QILIVNGDRLIEDPVPELQRIERFL 34 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~FL 34 (80)
.+|=+..+++..+|..++.+|..-|
T Consensus 83 ~VlR~~~~~v~~~~~~vv~~I~~~i 107 (108)
T PF04480_consen 83 TVLRFTAEDVREDPEAVVEQIRAAI 107 (108)
T ss_dssp EEEEEEHHHHHHGHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHhCHHHHHHHHHHHh
Confidence 4677888999999999999998765
No 25
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=34.41 E-value=28 Score=25.61 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred EEechhhhhChHHHHHHHHhhcCCCCCCCCCcceecCC
Q psy9932 13 IVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHT 50 (80)
Q Consensus 13 vl~~e~l~~~P~~~l~~v~~FLgl~~~~~~~~f~~n~~ 50 (80)
+|.++++.-+-+..+.++.+.|||+-.|..+.=+.|.+
T Consensus 26 viEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRs 63 (279)
T COG2877 26 VIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRS 63 (279)
T ss_pred eeccHHHHHHHHHHHHHHHhccCCceEEeccccccccc
Confidence 57889999999999999999999998554432234444
No 26
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=30.39 E-value=49 Score=15.73 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=13.9
Q ss_pred hHHHHHHHHhhcCCCC
Q psy9932 23 PVPELQRIERFLNLEP 38 (80)
Q Consensus 23 P~~~l~~v~~FLgl~~ 38 (80)
+...+.++.+.||+++
T Consensus 38 ~~~~~~~i~~~~~~~~ 53 (56)
T smart00530 38 SLETLKKLAKALGVSL 53 (56)
T ss_pred CHHHHHHHHHHhCCCh
Confidence 6788899999999986
No 27
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=29.98 E-value=11 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=22.3
Q ss_pred CcccccCCCCEEEEechh--hhhChHHHHHHHH
Q psy9932 1 MLLTVFPKEQILIVNGDR--LIEDPVPELQRIE 31 (80)
Q Consensus 1 rwl~~F~~~qilvl~~e~--l~~~P~~~l~~v~ 31 (80)
.|+..+....+++||+++ +..++......+.
T Consensus 111 ~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~~ 143 (146)
T PF01712_consen 111 DWLKKYDSTPVLVIDADNLDFVENPEDIEQVIN 143 (146)
T ss_dssp CHHSCCTTTTGCEEEECEEECCSHHTTHHHHHC
T ss_pred HHHHhCCCCceEEEECCccCcccCHHHHHHHHH
Confidence 377777788899999987 6666666555443
No 28
>KOG4023|consensus
Probab=29.30 E-value=33 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=15.8
Q ss_pred echhhhhChHHHHHHHHhhcCCCCCC
Q psy9932 15 NGDRLIEDPVPELQRIERFLNLEPHI 40 (80)
Q Consensus 15 ~~e~l~~~P~~~l~~v~~FLgl~~~~ 40 (80)
|+|.|... ..-+.|++||||-+..
T Consensus 79 dye~F~ea--~E~ntl~eFL~lap~~ 102 (108)
T KOG4023|consen 79 DYELFFEA--VEQNTLQEFLGLAPPP 102 (108)
T ss_pred cHHHHHHH--HHHHHHHHHHccCCCc
Confidence 44555443 2457899999998743
No 29
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=28.06 E-value=38 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=11.6
Q ss_pred hHHHHHHHHhhcCCCC
Q psy9932 23 PVPELQRIERFLNLEP 38 (80)
Q Consensus 23 P~~~l~~v~~FLgl~~ 38 (80)
...++.+|+++||+++
T Consensus 39 ~~~~l~~ia~~l~~~~ 54 (63)
T PF13443_consen 39 SLDTLEKIAKALNCSP 54 (63)
T ss_dssp -HHHHHHHHHHHT--H
T ss_pred cHHHHHHHHHHcCCCH
Confidence 4678999999999976
No 30
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=27.25 E-value=64 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=29.0
Q ss_pred ccCCCCEEEEechh-hhhChHHHHHHHHhhcCCCCCC
Q psy9932 5 VFPKEQILIVNGDR-LIEDPVPELQRIERFLNLEPHI 40 (80)
Q Consensus 5 ~F~~~qilvl~~e~-l~~~P~~~l~~v~~FLgl~~~~ 40 (80)
......++||...+ |+..=++.|..|.+||||+-..
T Consensus 116 AL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 116 ALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred HhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 34557789998877 7878899999999999998433
No 31
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=26.41 E-value=82 Score=21.20 Aligned_cols=35 Identities=11% Similarity=0.331 Sum_probs=30.4
Q ss_pred cccCCCCEEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 4 TVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 4 ~~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
+.++.=.+++||......+..+..+++.+.+|+.-
T Consensus 14 ~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i 48 (191)
T TIGR02055 14 KVRPDVKVFFLDTGRLFKETYETIDQVRERYDILI 48 (191)
T ss_pred hcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Confidence 45677789999999999999999999999999864
No 32
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=25.97 E-value=37 Score=21.61 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCCEEEEechhh--hhChHHHHHHHHhhcCCCCCCCCCcceecCCCCeeccc
Q psy9932 8 KEQILIVNGDRL--IEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLK 57 (80)
Q Consensus 8 ~~qilvl~~e~l--~~~P~~~l~~v~~FLgl~~~~~~~~f~~n~~kgf~C~~ 57 (80)
.+++-|...... ......+.+.+.+.+|.|-.+. +..+ .+++||..
T Consensus 65 ~~~~~V~r~~~~~~~~~~~~~~~~a~~~~g~~Y~~~---~~~~-~~~~yCSe 112 (158)
T PF05708_consen 65 NEKIAVYRLKDPLSEEQRQKAAEFAKSYIGKPYDFN---FSLD-DDRFYCSE 112 (158)
T ss_dssp CCEEEEEEECCGTTCHHHHHHHHHHHCCTTS-B-CC----HCC-SSSB-HHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHcCCCcccc---ccCC-CCCEEcHH
Confidence 456666666655 4445556666778888765333 2222 56899965
No 33
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=25.67 E-value=56 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=10.2
Q ss_pred CEEEEechhhhhChHHHHHHHHh
Q psy9932 10 QILIVNGDRLIEDPVPELQRIER 32 (80)
Q Consensus 10 qilvl~~e~l~~~P~~~l~~v~~ 32 (80)
.+|||.+++=.-.| ...+...+
T Consensus 233 P~lii~G~~D~~~~-~~~~~~~~ 254 (288)
T TIGR01250 233 PTLLTVGEFDTMTP-EAAREMQE 254 (288)
T ss_pred CEEEEecCCCccCH-HHHHHHHH
Confidence 46666665422223 34444444
No 34
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=25.57 E-value=52 Score=19.98 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=19.6
Q ss_pred CEEEEechh--h-------hhChHHHHHHHHhhcCCCC
Q psy9932 10 QILIVNGDR--L-------IEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 10 qilvl~~e~--l-------~~~P~~~l~~v~~FLgl~~ 38 (80)
++.|++.++ + ...-..++..+.++||+++
T Consensus 81 ~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~ 118 (122)
T smart00836 81 KCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISA 118 (122)
T ss_pred cCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 567777652 2 2234457888899999987
No 35
>PRK10030 hypothetical protein; Provisional
Probab=25.32 E-value=1.1e+02 Score=20.91 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCCEEEEechh-hh-hChHHHHHHHHhhcCCCCCCCCCcceecCCCCeeccc
Q psy9932 8 KEQILIVNGDR-LI-EDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLK 57 (80)
Q Consensus 8 ~~qilvl~~e~-l~-~~P~~~l~~v~~FLgl~~~~~~~~f~~n~~kgf~C~~ 57 (80)
..++.|..... |. ..-...++...+.||.|..+. |..+. .++||..
T Consensus 83 ~~~~~V~Rl~~~lt~~~~~~li~~A~~~lGkpYD~~---f~~~d-~~~YCSE 130 (197)
T PRK10030 83 KGKYVVRRLENGLSVEQQQKLAQTAKRYLGKPYDFY---FSWSD-DRIYCSE 130 (197)
T ss_pred cCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCcc---cccCC-CcEEeHH
Confidence 35666666554 43 334445666788899877553 44444 4899964
No 36
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=25.20 E-value=35 Score=24.13 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCC
Q psy9932 67 ESKGRKHVRVHPK 79 (80)
Q Consensus 67 ~~KGr~~~~~~~~ 79 (80)
+.||+.||++|++
T Consensus 200 ~~~~~~yp~~~~~ 212 (229)
T PRK11081 200 KRKGLPYPHIDEQ 212 (229)
T ss_pred HHcCCCCCCcCCC
Confidence 4566666666654
No 37
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=24.68 E-value=95 Score=20.40 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=28.4
Q ss_pred cccccCCCCEEEEechhhhhChHHHHHHHHh
Q psy9932 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIER 32 (80)
Q Consensus 2 wl~~F~~~qilvl~~e~l~~~P~~~l~~v~~ 32 (80)
...+.|+-.|.|+..+++..+-.++|.++..
T Consensus 113 ~~s~lP~~hi~vv~~~kIv~~l~ea~~~~~~ 143 (189)
T PF02589_consen 113 AVSLLPPVHIVVVGASKIVPNLEEALERLRN 143 (189)
T ss_dssp GGGTSSSEEEEEEEGGGEESSHHHHHHHHHH
T ss_pred hhhhCCCeEEEEEcHHHcCCCHHHHHHHHHh
Confidence 4567888999999999999999999999999
No 38
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=24.57 E-value=77 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCCEEEEechh-hhhChHHHHHHHHhhcCCCCCCCCC
Q psy9932 8 KEQILIVNGDR-LIEDPVPELQRIERFLNLEPHINHD 43 (80)
Q Consensus 8 ~~qilvl~~e~-l~~~P~~~l~~v~~FLgl~~~~~~~ 43 (80)
...++||.+.+ |...=.+.|+.+.+||||...+...
T Consensus 118 G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~ 154 (266)
T PF07517_consen 118 GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITS 154 (266)
T ss_dssp SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEET
T ss_pred cCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCcc
Confidence 35788888877 7777788999999999998755443
No 39
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=24.33 E-value=62 Score=18.47 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=16.0
Q ss_pred CCCEEEEechhhhhChHHHHHHHHhhc
Q psy9932 8 KEQILIVNGDRLIEDPVPELQRIERFL 34 (80)
Q Consensus 8 ~~qilvl~~e~l~~~P~~~l~~v~~FL 34 (80)
..++++++.+.|..+- .+++.+||
T Consensus 21 ~g~~Vivnl~~l~~~~---~~Ri~Dfl 44 (73)
T PF04472_consen 21 EGKIVIVNLENLDDEE---AQRILDFL 44 (73)
T ss_dssp TT--EEEE-TTS-HHH---HHHHHHHH
T ss_pred cCCEEEEECCCCCHHH---HHHHHHHH
Confidence 5678899998887664 78899987
No 40
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=24.29 E-value=51 Score=18.68 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.4
Q ss_pred cccCCCCEEEEechhhhhChHHH
Q psy9932 4 TVFPKEQILIVNGDRLIEDPVPE 26 (80)
Q Consensus 4 ~~F~~~qilvl~~e~l~~~P~~~ 26 (80)
..|+.+.|++-+-..|.+||+-.
T Consensus 10 t~fg~sei~~~~rtkmianpaf~ 32 (62)
T PF10653_consen 10 TIFGDSEIHINDRTKMIANPAFQ 32 (62)
T ss_pred cccCcceeeecchHHHhcCHHHH
Confidence 36889999999999999999743
No 41
>KOG1349|consensus
Probab=24.21 E-value=50 Score=24.61 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.5
Q ss_pred cCCCCEEEEechhhhhCh
Q psy9932 6 FPKEQILIVNGDRLIEDP 23 (80)
Q Consensus 6 F~~~qilvl~~e~l~~~P 23 (80)
+|.+||+++.+|++.-|+
T Consensus 61 ipDsqIilmladd~acn~ 78 (309)
T KOG1349|consen 61 IPDSQIILMLADDMACNS 78 (309)
T ss_pred CCcccEEEEecccccccc
Confidence 688999999999998764
No 42
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.08 E-value=85 Score=18.14 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=16.2
Q ss_pred hChHHHHHHHHhhcCCCC
Q psy9932 21 EDPVPELQRIERFLNLEP 38 (80)
Q Consensus 21 ~~P~~~l~~v~~FLgl~~ 38 (80)
.+|..++..|++-++||.
T Consensus 44 ~dpr~VW~AlC~~~dVP~ 61 (63)
T PF11248_consen 44 VDPRDVWRALCDAFDVPE 61 (63)
T ss_pred CCHHHHHHHHHHHcCCCC
Confidence 379999999999999986
No 43
>KOG1387|consensus
Probab=22.95 E-value=1.4e+02 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.510 Sum_probs=31.1
Q ss_pred ccCCCCEEEEechhhhhChHHHHHHHHhhcCCCCCCCCCc
Q psy9932 5 VFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDN 44 (80)
Q Consensus 5 ~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~~~~~~~ 44 (80)
-|| +++.||-+.|+-..|...|+++..-.+++ ++.++
T Consensus 73 k~~-n~~~viYsGD~n~t~~~IL~k~k~~F~id--lDs~n 109 (465)
T KOG1387|consen 73 KFP-NNVIVIYSGDFNVTPENILNKVKNKFDID--LDSDN 109 (465)
T ss_pred hCC-CceEEEEeCCCCCCHHHHHHHHHHhcCce--ecccc
Confidence 355 78899999999999999999999999986 45554
No 44
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=22.81 E-value=1e+02 Score=21.25 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhcCCCCCCCCCcceecCCCCeecc
Q psy9932 23 PVPELQRIERFLNLEPHINHDNFYFNHTKGFYCL 56 (80)
Q Consensus 23 P~~~l~~v~~FLgl~~~~~~~~f~~n~~kgf~C~ 56 (80)
...+++....|+|+|..+-.. ...||.|.
T Consensus 67 ~~~il~~a~~~~G~pY~~GG~-----s~~G~DCS 95 (190)
T PRK10838 67 KSRIMDQYADWKGVRYRLGGS-----TKKGIDCS 95 (190)
T ss_pred HHHHHHHHHHHCCCCccCCCC-----CCCCeEcH
Confidence 356788889999998744433 23488884
No 45
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=22.20 E-value=1e+02 Score=17.82 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCCC---CCCCCcceecCC
Q psy9932 25 PELQRIERFLNLEP---HINHDNFYFNHT 50 (80)
Q Consensus 25 ~~l~~v~~FLgl~~---~~~~~~f~~n~~ 50 (80)
..+.+|..||+... ..+.++|.|+..
T Consensus 44 RS~~eV~~yL~~~~~~~~l~~~~F~F~~~ 72 (77)
T PF01429_consen 44 RSKKEVVRYLKENPSEHDLKPENFSFSKR 72 (77)
T ss_dssp SSHHHHHHHHTTSS---SS-CTTBBTTTT
T ss_pred eCHHHHHHHHHhCCCcccCCHhHCCCCCC
Confidence 35788999999876 366677877654
No 46
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=21.71 E-value=1.1e+02 Score=16.89 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.5
Q ss_pred EEEechhhhhChHHHHHHHHh
Q psy9932 12 LIVNGDRLIEDPVPELQRIER 32 (80)
Q Consensus 12 lvl~~e~l~~~P~~~l~~v~~ 32 (80)
-+|...++++++...++++.+
T Consensus 2 ~~vs~~e~r~~~~~~l~~v~~ 22 (75)
T PF02604_consen 2 KTVSITEFRNNFSELLDEVEE 22 (75)
T ss_dssp EEEEHHHHHHTHHHHHHHHHH
T ss_pred CEecHHHHHHHHHHHHHHHHc
Confidence 468889999999999999887
No 47
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=21.43 E-value=60 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.3
Q ss_pred cCCCCEEEEechhhhhChHH
Q psy9932 6 FPKEQILIVNGDRLIEDPVP 25 (80)
Q Consensus 6 F~~~qilvl~~e~l~~~P~~ 25 (80)
+|.+||+++-+|+...+|..
T Consensus 33 ~~~~~Iil~~~dd~a~~~~N 52 (256)
T PF01650_consen 33 IPDENIILMMYDDIACNPRN 52 (256)
T ss_pred CCCceEEEEecCCccchhhC
Confidence 67899999999998776543
No 48
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=21.14 E-value=53 Score=16.54 Aligned_cols=19 Identities=21% Similarity=0.712 Sum_probs=12.9
Q ss_pred ecccCCCCc--CcCCCCCCCC
Q psy9932 54 YCLKDNSME--RCLRESKGRK 72 (80)
Q Consensus 54 ~C~~~~~~~--~Cl~~~KGr~ 72 (80)
.|.++++++ -|+.+.||+.
T Consensus 10 dcrrnspgtygecvkkekgke 30 (35)
T PF08120_consen 10 DCRRNSPGTYGECVKKEKGKE 30 (35)
T ss_pred ccccCCCCchhhhhhhccCcc
Confidence 466666544 7888888864
No 49
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.09 E-value=62 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 11 ILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 11 ilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
|.+||++-..+--..+.+++.+++|++.
T Consensus 75 itlVdGeiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 75 ITLVDGEIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp EEEETTEEEEESS---HHHHHHHHT--G
T ss_pred EEEECCEEEEecCCCCHHHHHHHhCCCc
Confidence 6788999999988999999999999987
No 50
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.98 E-value=1.2e+02 Score=20.48 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=28.8
Q ss_pred ccCCCCEEEEechhhhhChHHHHHHHHhhcCCCC
Q psy9932 5 VFPKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38 (80)
Q Consensus 5 ~F~~~qilvl~~e~l~~~P~~~l~~v~~FLgl~~ 38 (80)
.++.-.++++|......+..+.++++.+.+|+.-
T Consensus 36 ~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i 69 (212)
T TIGR00434 36 ISPDIPVIFLDTGYHFPETYELIDELTERYPLNI 69 (212)
T ss_pred cCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCce
Confidence 4566678999999999999999999999998743
No 51
>PF15502 MPLKIP: M-phase-specific PLK1-interacting protein
Probab=20.95 E-value=62 Score=21.43 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.5
Q ss_pred hhhhhChHHHHHHHHh
Q psy9932 17 DRLIEDPVPELQRIER 32 (80)
Q Consensus 17 e~l~~~P~~~l~~v~~ 32 (80)
..|..|||+.|..|..
T Consensus 122 pSMLEDPW~~L~p~~~ 137 (151)
T PF15502_consen 122 PSMLEDPWAHLEPVSW 137 (151)
T ss_pred HHhhhChHHHhhhhhh
Confidence 4689999999998765
No 52
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=20.75 E-value=44 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=29.0
Q ss_pred EechhhhhChHHHHHHHHhhcCCCCCCCCCcceecCCCC---eecccC
Q psy9932 14 VNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKG---FYCLKD 58 (80)
Q Consensus 14 l~~e~l~~~P~~~l~~v~~FLgl~~~~~~~~f~~n~~kg---f~C~~~ 58 (80)
|+++.+...|..+++.+.+++|+++.-.-..+.+...+| +++..-
T Consensus 13 i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~ 60 (153)
T cd04336 13 ARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVL 60 (153)
T ss_pred CCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEE
Confidence 345555666777888899999998754444444444443 666653
No 53
>KOG3552|consensus
Probab=20.17 E-value=1e+02 Score=27.04 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=24.1
Q ss_pred cccCCCCEEEEechhhhhChHHHHHHHHh
Q psy9932 4 TVFPKEQILIVNGDRLIEDPVPELQRIER 32 (80)
Q Consensus 4 ~~F~~~qilvl~~e~l~~~P~~~l~~v~~ 32 (80)
+.+|-+|||-|.+|...+.|++-.-.+.+
T Consensus 91 KL~PGDQIl~vN~Epv~daprervIdlvR 119 (1298)
T KOG3552|consen 91 KLQPGDQILAVNGEPVKDAPRERVIDLVR 119 (1298)
T ss_pred cccCCCeEEEecCcccccccHHHHHHHHH
Confidence 56899999999999999999986655443
No 54
>PRK03204 haloalkane dehalogenase; Provisional
Probab=20.04 E-value=81 Score=21.97 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=8.2
Q ss_pred hhChHHHHHHHHhhcC
Q psy9932 20 IEDPVPELQRIERFLN 35 (80)
Q Consensus 20 ~~~P~~~l~~v~~FLg 35 (80)
..+|..+.+.|.+|||
T Consensus 271 ~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 271 EDAPDRIAAAIIERFG 286 (286)
T ss_pred ccCHHHHHHHHHHhcC
Confidence 3445555555555554
Done!