RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9932
(80 letters)
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 79.1 bits (194), Expect = 7e-20
Identities = 49/79 (62%), Positives = 58/79 (73%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP I IV+GDRLI DP PE+Q++ERFL L P IN NFYFN TKGFYCL+D+
Sbjct: 165 WLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK 224
Query: 62 ERCLRESKGRKHVRVHPKV 80
+RCL ESKGR H +V PK+
Sbjct: 225 DRCLHESKGRAHPQVDPKL 243
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 72.2 bits (176), Expect = 4e-17
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLK-DNS 60
L FP EQ +V+GDRLI +P+PELQ +E+FLNL P I+ N YFN T+GFYCL+ +
Sbjct: 175 WLKYFPIEQFHVVDGDRLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNEI 234
Query: 61 MERCLRESKGRKHVRVHPKV 80
+CL SKGR H V P V
Sbjct: 235 FNKCLAGSKGRIHPEVDPSV 254
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 71.4 bits (174), Expect = 7e-17
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
L FP Q+L V+G+RLI DP EL R++ FL L+ I +FYFN TKGF CLK
Sbjct: 163 WLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEG 222
Query: 62 E---RCLRESKGRKHVRVHPKV 80
CL ++KGR H + +V
Sbjct: 223 SSRPHCLGKTKGRTHPEIDREV 244
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 66.4 bits (161), Expect = 6e-15
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHIN-HDNFYFNHTKGFYC-LKDN 59
L+ + QIL+++G L +P + +++FL + I+ H F+ KGF+C L +
Sbjct: 207 WLSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEG 266
Query: 60 SMERCLRESKGRKHVRVHPKV 80
+CL +SKGRK+ +
Sbjct: 267 GKTKCLGKSKGRKYPEMDLDS 287
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 57.1 bits (137), Expect = 1e-11
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 2 LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLK 57
L VF +EQ+ ++ + DPV ++ FL + D ++ G +
Sbjct: 174 YLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGVSTDFVPDTSIRHNESGVPKSR 229
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 27.5 bits (61), Expect = 0.43
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 4 TVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFY 46
V E+ L V ++L+ P L+ I FL + +
Sbjct: 205 EVGK-EKCLPVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHE 246
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 27.4 bits (61), Expect = 0.45
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 5 VFPKEQILIVNGDRLIEDPVPELQRIE-RFLNLEPHINHD 43
VF E ++ + G P+ + Q +E LN+ +N
Sbjct: 108 VFNNEPLIQIEG------PLAQCQLVETALLNM---VNFQ 138
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 26.0 bits (56), Expect = 1.2
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 2 LLTVFPKEQI--LIVNGDRLIEDPVPELQRIERFLNLEPHIN 41
F +E + + V+ L + + + L +P +
Sbjct: 215 WRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQDPRLA 256
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain,
structural genomics, PSI- protein structure initiative;
NMR {Escherichia coli} PDB: 2kky_A
Length = 102
Score = 24.2 bits (52), Expect = 3.9
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 40 INHDNFYFNHTKGFYCLKDN 59
+ H+ ++ T+G + +K N
Sbjct: 83 VKHEECIYDDTRGNFIIKGN 102
>2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A
{Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A*
2qqv_A* 2qqu_A*
Length = 541
Score = 24.5 bits (53), Expect = 4.2
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 6 FPKEQILIVNGDRLIEDPVPELQ--RIERFLNLEPHINHDNFYF 47
P++ L +G +LI+ PV E++ R ++ NL +
Sbjct: 318 IPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRL 361
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 24.4 bits (53), Expect = 5.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 19 LIEDPVPELQRIERFLNLEPHINHD 43
L DPV I FL+L ++ +
Sbjct: 204 LKGDPVARFSEIVEFLDLGGPVDIE 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 5.8
Identities = 8/50 (16%), Positives = 12/50 (24%), Gaps = 18/50 (36%)
Query: 20 IEDPVPELQRI----------------ERFLNLEPHINHDNFYFNHTKGF 53
+D EL+ + E L F T+G
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGL 213
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG
MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A*
2aey_A* 2aez_A*
Length = 543
Score = 24.1 bits (52), Expect = 6.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 6 FPKEQILIVNGDRLIEDPVPELQR 29
FP+ + NG +LI+ PV E++
Sbjct: 313 FPRALWIDRNGKQLIQWPVEEIEE 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 8.4
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 3 LTVFPK-----EQIL-IVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCL 56
L+VFP +L ++ D + D + + ++ ++ +E ++ Y
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIP--SIYLE 434
Query: 57 KDNSMERCLRESKGRKHVRV 76
+ E++ H +
Sbjct: 435 -----LKVKLENEYALHRSI 449
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.445
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,261,285
Number of extensions: 62223
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 20
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)