RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9932
         (80 letters)



>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 60.3 bits (145), Expect = 3e-13
 Identities = 49/79 (62%), Positives = 58/79 (73%)

Query: 2   LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKDNSM 61
            L  FP   I IV+GDRLI DP PE+Q++ERFL L P IN  NFYFN TKGFYCL+D+  
Sbjct: 154 WLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK 213

Query: 62  ERCLRESKGRKHVRVHPKV 80
           +RCL ESKGR H +V PK+
Sbjct: 214 DRCLHESKGRAHPQVDPKL 232


>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 54.9 bits (131), Expect = 3e-11
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 3   LTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHIN-HDNFYFNHTKGFYCLK-DNS 60
           L+ +   QIL+++G  L  +P   +  +++FL +   I+ H    F+  KGF+C   +  
Sbjct: 187 LSAYHANQILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGG 246

Query: 61  MERCLRESKGRKHVRVHPKV 80
             +CL +SKGRK+  +    
Sbjct: 247 KTKCLGKSKGRKYPEMDLDS 266


>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
           3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 271

 Score = 50.7 bits (120), Expect = 7e-10
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 3/82 (3%)

Query: 2   LLTVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD--- 58
            L  FP  Q+L V+G+RLI DP  EL R++ FL L+  I   +FYFN TKGF CLK    
Sbjct: 163 WLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPCLKKAEG 222

Query: 59  NSMERCLRESKGRKHVRVHPKV 80
           +S   CL ++KGR H  +  +V
Sbjct: 223 SSRPHCLGKTKGRTHPEIDREV 244


>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
           smegmatis [TaxId: 1772]}
          Length = 265

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 7   PKEQILIVNGDRLIEDPVPELQRIERFLNLEP 38
              + + V+   L  +    +  +   L  +P
Sbjct: 200 ENVEPIDVDYPYLWRNLTEVVGTVLEALGQDP 231


>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ),
          C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 225

 Score = 23.5 bits (50), Expect = 3.7
 Identities = 6/25 (24%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 10 QILIVNGDRLIEDPVPELQRIERFL 34
          Q+++V     ++ P      I++FL
Sbjct: 13 QVILVVT---VKMPETSTYIIDKFL 34


>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 23.4 bits (50), Expect = 4.2
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 22 DPVPELQRIERFLNLEPH 39
          +P   LQ++     L  H
Sbjct: 17 EPPSSLQQLINDWQLIKH 34


>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ),
          C-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 231

 Score = 22.8 bits (48), Expect = 7.5
 Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 3/25 (12%)

Query: 10 QILIVNGDRLIEDPVPELQRIERFL 34
          Q ++V        P      ++RFL
Sbjct: 13 QAVLVFS---AVQPSFSTALLDRFL 34


>d3d85d2 b.1.2.1 (D:88-211) The p40 domain of interleukin-12 (IL-12
           beta chain), domains 2 and 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 22.5 bits (48), Expect = 7.7
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)

Query: 26  ELQRIERFLNLEPHINHDNFYFNHTKGFYCLKD 58
           E   IE  +       H   Y  +T  F+ ++D
Sbjct: 95  ESLPIEVMV----DAVHKLKYEQYTSSFF-IRD 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,256
Number of extensions: 13398
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 13
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)