BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9933
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 231 bits (590), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 155/227 (68%), Gaps = 22/227 (9%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLFNTNA+IV + A A+ P+A+I +I+NPVNST+PI AEV KK GV++P ++F
Sbjct: 112 MTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIF 171
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDIVRANTFVAE KGL+P VNVPVIGGHAG TIIPLISQ TP V FP DQL ALT
Sbjct: 172 GVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALT 231
Query: 121 GRIQEAVSLKNGIEKNLGLGKLS-DFEKERQQFS--------------PFIK---TFASF 162
GRIQEA + + G LS + R FS F+K T ++
Sbjct: 232 GRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTY 291
Query: 163 FSP----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
FS K GIEKNLG+GK+S FE++++ A+PELK +I KGE+FV
Sbjct: 292 FSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 338
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/231 (53%), Positives = 152/231 (65%), Gaps = 30/231 (12%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLFNTNA+IV + A A+ P A+I IISNPVNST+PI AEV KK GV++P ++F
Sbjct: 84 MTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIF 143
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDIVRAN FVAE KGL+P V+VPVIGGHAG TIIPLISQ TP V FP DQL LT
Sbjct: 144 GVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLT 203
Query: 121 GRIQEA--------------------------VSLKNGIEKNLGLGKLSDFEKERQQFSP 154
GRIQEA SL + + G+ + S F K ++ P
Sbjct: 204 GRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECS-FVKSQETDCP 262
Query: 155 FIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
+ F++ K GIEKNLG+GK+S FE++++ A+PELK +I KGEEFV
Sbjct: 263 Y---FSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 146/229 (63%), Gaps = 23/229 (10%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M R DLFN NA IV+++++ VA+ PKA IGII+NPVN+TV IAAEVLKKAGV+D +LF
Sbjct: 85 MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLF 144
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDI+R+NTFVAE KG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT
Sbjct: 145 GVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLT 203
Query: 121 GRIQ----EAVSLKNG----------IEKNLGLGKLSDFEKERQQF-SPFIK---TFASF 162
RIQ E V K G GL + + E+ +++ +A F
Sbjct: 204 KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARF 263
Query: 163 FSP----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
FS KNG+E+ +G LS FE+ ++ + LKK+IA GEEFV K
Sbjct: 264 FSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 146/229 (63%), Gaps = 23/229 (10%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M R DLFN NA IV+++++ VA+ PKA IGII+NPVN+TV IAAEVLKKAGV+D +LF
Sbjct: 85 MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLF 144
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDI+R+NTFVAE KG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT
Sbjct: 145 GVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLT 203
Query: 121 GRIQ----EAVSLKNG----------IEKNLGLGKLSDFEKERQQF-SPFIK---TFASF 162
RIQ E V K G GL + + E+ +++ +A F
Sbjct: 204 KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARF 263
Query: 163 FSP----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
FS KNG+E+ +G LS FE+ ++ + LKK+IA G+EFV K
Sbjct: 264 FSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 145/229 (63%), Gaps = 23/229 (10%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M R DLFN NA IV+++++ VA+ PKA IGII+NPVN+TV IAAEVLKKAGV+D +LF
Sbjct: 85 MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLF 144
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDI+ +NTFVAE KG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT
Sbjct: 145 GVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLT 203
Query: 121 GRIQ----EAVSLKNG----------IEKNLGLGKLSDFEKERQQF-SPFIK---TFASF 162
RIQ E V K G GL + + E+ +++ +A F
Sbjct: 204 KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARF 263
Query: 163 FSP----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
FS KNG+E+ +G LS FE+ ++ + LKK+IA G+EFV K
Sbjct: 264 FSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 139/230 (60%), Gaps = 28/230 (12%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLF NA IV+ + + +A+ P+A++ +ISNPVNSTVPIAAEV KKAG +DP+RL
Sbjct: 128 MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLL 187
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVT LD+VRANTFVAE GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT
Sbjct: 188 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLT 247
Query: 121 GRIQ----EAVSLKNG-----IEKNLGLGKLSD----------------FEKERQQFSPF 155
RIQ E V K G + K +D F + PF
Sbjct: 248 DRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPF 307
Query: 156 IKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
FAS +NGIE+ LG L+++E+ ++ A EL +I KG F+
Sbjct: 308 ---FASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 354
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 139/230 (60%), Gaps = 28/230 (12%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLF NA IV+ + + +A+ P+A++ +ISNPVNSTVPIAAEV KKAG +DP+RL
Sbjct: 92 MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLL 151
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVT LD+VRANTFVAE GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT
Sbjct: 152 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLT 211
Query: 121 GRIQ----EAVSLKNG-----IEKNLGLGKLSD----------------FEKERQQFSPF 155
RIQ E V K G + K +D F + PF
Sbjct: 212 DRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPF 271
Query: 156 IKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
FAS +NGIE+ LG L+++E+ ++ A EL +I KG F+
Sbjct: 272 ---FASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 318
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 22/224 (9%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
R DLFN NA IV+ + + +A V P A IGII+NPVN+TVPIAAEVLKKAGV+D R+LFGV
Sbjct: 90 RADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAEVLKKAGVYDKRKLFGV 149
Query: 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGR 122
TTLD++R+ TFVAE KG +P +V VPVIGGH+G+TI+PL+SQ V F D+++ ALT R
Sbjct: 150 TTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQ-VEGVEFSDEEIAALTKR 208
Query: 123 IQ----EAVSLKNG----------IEKNLGLGKLSDFEKERQQFSPFIK---TFASFFSP 165
IQ E V K G GL + + E +++ ASFF+
Sbjct: 209 IQNAGTEVVEAKAGGGSATLSXGQAACRFGLALVKALQGEEVIEYAYVEGNGEHASFFAQ 268
Query: 166 ----QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
K G+E+ L G+LSDFEK + + L +I G +FV
Sbjct: 269 PVKLGKEGVEEILPYGELSDFEKAALDGXLETLNSDIQIGVDFV 312
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL TN+ I++ I + +A+ +P A+I +++NPV++ + V K+AG F R+
Sbjct: 94 MSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYSVFKEAG-FPKERVI 149
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPS-----VSFPDD 114
G + LD R TF+A+ L+ D+ V+GGH G ++PL+ + P +
Sbjct: 150 GQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKE 208
Query: 115 QLKALTGRIQEA 126
+L+A+ R ++
Sbjct: 209 RLEAIVERTRKG 220
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 6/105 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR L NA ++++I + V++ AP +++ +++NPV+ + LK++G+ DPR++FG
Sbjct: 84 TRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV---LTYFFLKESGM-DPRKVFG 139
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
T LD R T +A+ G +P V+V VIG H G + +P+ S A
Sbjct: 140 SGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGA 183
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R+DL NA I R I A ++P A+I +++NP+++ +AAEV F R+
Sbjct: 86 MSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG----FPKERVI 141
Query: 61 G-VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
G LD R TF+A G++ DV ++GGH G ++PL
Sbjct: 142 GQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPL 182
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R+DL NA I R I A ++P A+I +++NP+++ +AAEV F R+
Sbjct: 86 MSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG----FPKERVI 141
Query: 61 G-VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
G LD R TF+A G++ DV ++GGH G ++PL
Sbjct: 142 GQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPL 182
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R+DL NA I R I A ++P A+I +++NP+++ +AAEV F R+
Sbjct: 86 MSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG----FPKERVI 141
Query: 61 G-VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
G LD R TF+A G++ DV ++GGH G ++PL
Sbjct: 142 GQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPL 182
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R+DL NA I R I A ++P A+I +++NP+++ +AAEV F R+
Sbjct: 86 MSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG----FPKERVI 141
Query: 61 G-VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
G LD R TF+A G++ DV ++GGH G ++PL
Sbjct: 142 GQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPL 182
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+DL + NA IVR++ + E + +I ++SNP++ +A +K+G+ R +
Sbjct: 85 MTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA---WQKSGLPKERVIG 141
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +F+A G++ DV V+GGH G ++P++ T
Sbjct: 142 MAGVLDSARFRSFIAMELGVSMQDVTACVLGGH-GDAMVPVVKYTT 186
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR DL NA IV + + V + P A + I+NP+++ V E K+G+ ++
Sbjct: 98 MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKE---KSGI-PANKVC 153
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G++ LD R ++ A G+ P+DV+ V+GGH G +IPL S T
Sbjct: 154 GMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVT 199
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R+DL N+ I+R+I + + + PK I +++NP++ V + E +GV
Sbjct: 97 WSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE---ASGVPTNMICG 153
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +VA+A ++P DV VIG H G ++PL+ T
Sbjct: 154 MACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYIT 198
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R+DL N+ I+R+I + + + PK I +++NP++ V + E +GV
Sbjct: 99 WSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCE---ASGVPTNMICG 155
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +VA+A ++P DV VIG H G ++PL+ T
Sbjct: 156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYIT 200
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R+DL N+ I+R+I + + + PK I +++NP++ V + E +GV
Sbjct: 99 WSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMXE---ASGVPTNMICG 155
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +VA+A ++P DV VIG H G ++PL+ T
Sbjct: 156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYIT 200
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+DL NA IV+++ + + + +I ++SNP++ +A ++G+ R +
Sbjct: 85 MTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSGLPKERVIG 141
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +F+A G++ D+N V+GGH G ++P++ T
Sbjct: 142 MAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTT 186
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+DL NA IV+++ + + + +I ++SNP++ +A ++G+ R +
Sbjct: 85 MTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSGLPKERVIG 141
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
LD R +F+A G++ D+N V+GGH G ++P++ T
Sbjct: 142 MAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTT 186
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL N IV + + E +P + I +++NP++ +A E A F R+
Sbjct: 85 MSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE----ASGFPTNRVM 140
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
G+ LD R +F+AE ++ DV ++GGH G T++PL
Sbjct: 141 GMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPL 181
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL N ++ + + + AP+A + I+NP+++ V L+K ++
Sbjct: 91 MSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV----WALQKFSGLPAHKVV 146
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT-PSVSFPD 113
G+ LD R F++E ++ DV V V+GGH G +++PL +T + PD
Sbjct: 147 GMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPD 200
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R+DL NA I+R++ + V + P A + +++NP++ V + +A +
Sbjct: 97 WSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLPKNMVC 152
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFP 112
G+ LD R F+A+ ++P D+ VIG H G ++PL T + FP
Sbjct: 153 GMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVN-GFP 203
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R+DL NA I+R++ + V + P A + +++NP++ V + +A +
Sbjct: 97 WSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV----KCFHEASGLPKNMVC 152
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFP 112
G+ LD R F+A+ ++P D+ VIG H G ++PL T + FP
Sbjct: 153 GMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLPLARYVTVN-GFP 203
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
R +L NA I+ + + V + P A + I+NP++ V + K +G+ +
Sbjct: 90 RSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMV---SHFQKVSGLPHNKVCGMA 146
Query: 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVS 110
LD R TF+A+ G+N +DV+ VIGGH G ++P AT SVS
Sbjct: 147 GVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVP----ATSSVS 189
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
R +L NA I+ + + V + P A + I+NP++ V + K +G+ +
Sbjct: 90 RSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMV---SHFQKVSGLPHNKVCGMA 146
Query: 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVS 110
LD R TF+A+ G+N +DV+ VIGGH G ++P AT SVS
Sbjct: 147 GVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVP----ATSSVS 189
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR DL N +I++ I+ V + +P I +++NPV+ I V+ K F R+ G
Sbjct: 104 TRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYVVWKISGFPVGRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G+NPT + V+G H G + +P+ S
Sbjct: 160 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWS 201
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR L + NA + ++ V E AP+A++ + +NPV+ + +V + P R+ G
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VXTQVAYRLSGLPPGRVVG 139
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQ---ATPSVSFPDDQLK 117
T LD R +AE + P V+ V+G H ++ S P + F + + +
Sbjct: 140 SGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGR 199
Query: 118 ALT----GRIQEAV 127
AL+ RI E V
Sbjct: 200 ALSPEDRARIDEGV 213
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R DL TNA IV K +AE+ + +I+NPV+ + A V K F+ ++F
Sbjct: 90 MSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD-VMTYKALVDSK---FERNQVF 144
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ T LD +R +A+ G++ +V +IG H G +++PL+S +
Sbjct: 145 GLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATS 190
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L +I++ I+ + +VAP A+ +I+NPV+ IA V +K ++FG
Sbjct: 92 SRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFG 147
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
T LD R +A+ G+N +V+ + G H G + +PL AT
Sbjct: 148 SGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESAT 192
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR L + NA + ++ V E AP+A++ + +NPV+ + +V + P R+ G
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYRLSGLPPGRVVG 139
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQ---ATPSVSFPDDQLK 117
T LD R +AE + P V+ V+G H ++ S P + F + + +
Sbjct: 140 SGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGR 199
Query: 118 ALT----GRIQEAV 127
AL+ RI E V
Sbjct: 200 ALSPEDRARIDEGV 213
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+ L NA+ + D+ + + A A++ I +NPV++ + + KK G F R+
Sbjct: 83 MTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYV---MYKKTG-FPRERVI 138
Query: 61 GVT-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
G + LD R ++++ G++ VN V+G H
Sbjct: 139 GFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHG 173
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR L + NA + ++ V E AP+A++ + +NPV+ + +V + P R+ G
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYRLSGLPPGRVVG 139
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQ---ATPSVSFPDDQLK 117
T LD R +AE + P V+ V+G H ++ S P + F + +
Sbjct: 140 SGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGA 199
Query: 118 ALT----GRIQEAV 127
AL+ RI E V
Sbjct: 200 ALSPEDRARIDEGV 213
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR L + NA + ++ V E AP+A++ + +NPV+ + +V P R+ G
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVVG 139
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQ---ATPSVSFPDDQLK 117
T LD R +AE + P V+ V+G H ++ S P + F + + +
Sbjct: 140 SGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGR 199
Query: 118 ALT----GRIQEAV 127
AL+ RI E V
Sbjct: 200 ALSPEDRARIDEGV 213
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKK-AGVFDPRRLF 60
+RDDL N + + + + + P A + I+NP++ I L+K +GV D + +
Sbjct: 90 SRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLD----IXVNXLQKFSGVPDNKIVG 145
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPL 101
LD R TF+A+ ++ V V GGH G T +PL
Sbjct: 146 XAGVLDSARFRTFLADELNVSVQQVQAYVXGGH-GDTXVPL 185
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II + + +P ++ ++SNPV+ I V K F R+ G
Sbjct: 104 SRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYVAWKLSGFPRHRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
T LD R + E L+P+ + ++G H G + +P+ S
Sbjct: 160 SGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWS 201
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPR-RLFG 61
RDDL N I+ +I + + P A I +++NPV+ V + E +GV P+ ++ G
Sbjct: 94 RDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVTNPVDVMVQLLFE---HSGV--PKNKIIG 148
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
+ LD R ++++ + P DVN ++G H
Sbjct: 149 LGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHG 182
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II + + +P ++ ++SNPV+ +A K +G+ R +
Sbjct: 105 SRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSGLPRNRVIGS 161
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
T LD R + E G++P++ + VIG H G + +P+ S
Sbjct: 162 GTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWS 202
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
RDDL N I+ +I + + P A I +++NPV+ V ++L + ++ G+
Sbjct: 95 RDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGL 150
Query: 63 -TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R ++++ + P DVN ++G H
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
RDDL N I+ +I + + P A I +++NPV+ V ++L + ++
Sbjct: 92 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
G+ LD R ++++ + P DVN ++G H
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 182
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
RDDL N I+ +I + + P A I +++NPV+ V ++L + ++ G+
Sbjct: 95 RDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGL 150
Query: 63 -TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R ++++ + P DVN ++G H
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
RDDL N I+ +I + + P A I +++NPV+ V ++L + ++ G+
Sbjct: 95 RDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGL 150
Query: 63 -TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R ++++ + P DVN ++G H
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
RDDL N I+ +I + + P A I +++NPV+ V ++L + ++
Sbjct: 92 WNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKII 147
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
G+ LD R ++++ + P DVN ++G H
Sbjct: 148 GLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 182
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R DL NA I R+++ + AP A++ + SNPV+ +A ++ V
Sbjct: 84 SRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGSG---- 139
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
T LD R +A+ G++ T + V+G H ++ S
Sbjct: 140 -TVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSS 180
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
RDDL N I+ +I + P A I +++NPV+ V ++L + ++ G+
Sbjct: 95 RDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGL 150
Query: 63 -TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R ++++ + P DVN ++G H
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N ++ + II + + +P +I ++SNPV+ I V K R+ G
Sbjct: 105 SRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG 160
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R +AE G++P+ + ++G H
Sbjct: 161 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 194
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II V + +P+ + I+SNPV+ I V K F R+ G
Sbjct: 104 SRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++P + V+G H G + +P+ S
Sbjct: 160 SGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWS 201
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N ++ + II + + +P +I ++SNPV+ I V K R+ G
Sbjct: 105 SRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG 160
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R +AE G++P+ + ++G H
Sbjct: 161 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 194
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II V + +P+ + I+SNPV+ I V K F R+ G
Sbjct: 105 SRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIG 160
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++P + V+G H G + +P+ S
Sbjct: 161 SGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWS 202
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N ++ + II + + +P +I ++SNPV+ +A K +G+ R +
Sbjct: 106 SRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVA---WKLSGLPKHRVIGS 162
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R + E G++P+ + ++G H
Sbjct: 163 GCNLDSARFRYLMGEKLGVHPSSCHGWILGEHG 195
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPR-RL 59
MTR DL + NA I++DI K + E AP++ I +++NP++ I + K++G PR +
Sbjct: 85 MTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYI---MWKESG--KPRNEV 139
Query: 60 FGV 62
FG+
Sbjct: 140 FGM 142
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II V + +P + I+SNPV+ I V K F R+ G
Sbjct: 104 SRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYVAWKISGFPKNRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++P + V+G H G + +P+ S
Sbjct: 160 SGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWS 201
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II V + +P + I+SNPV+ I V K F R+ G
Sbjct: 104 SRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYVAWKISGFPKNRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++P + V+G H G + +P+ S
Sbjct: 160 SGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWS 201
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 3 RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV 62
R DL N I+ +I + + P A I +++NPV+ V ++L + ++ G+
Sbjct: 95 RLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGL 150
Query: 63 T-TLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R ++++ + P DVN ++G H
Sbjct: 151 GGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR DL N I +++ + + + +I ++SNPV+ I + K +G+ + +
Sbjct: 91 TRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD---IITYMIQKWSGLPVGKVIGS 147
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
T LD +R ++E G++ +V+ +IG H G + +PL S
Sbjct: 148 GTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWS 188
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR +L N I + I+ V + + +NPV+ + K +G+ R +
Sbjct: 90 TRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTYATWKFSGLPKERVIGS 146
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
TTLD R ++E G P +V+ +IG H G T +P+ S A
Sbjct: 147 GTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GDTELPVWSHA 189
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II + + +P + ++SNPV+ I V K F R+ G
Sbjct: 105 SRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD----ILTYVAWKISGFPKNRVIG 160
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++P + ++G H G + +P+ S
Sbjct: 161 SGCNLDSARFRYLMGERLGVHPLSCHGWILGEH-GDSSVPVWS 202
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR DL N N I++ I+ + + + + +NPV+ I K F R+ G
Sbjct: 93 TRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVG 148
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
T+LD R +AE ++ V+ ++G H G T P+ S A
Sbjct: 149 SGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II + + +P +I ++SNPV+ +A K +G+ R +
Sbjct: 106 SRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGS 162
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R + E G++ + VIG H
Sbjct: 163 GCNLDSARFRYLMGERLGVHSCSCHGWVIGEHG 195
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II + + +P +I ++SNPV+ +A K +G+ R +
Sbjct: 105 SRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGS 161
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
LD R + E G++ + VIG H
Sbjct: 162 GCNLDSARFRYLMGERLGVHSCSCHGWVIGEHG 194
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR DL N N I++ I+ + + + + +NPV+ I K F R+ G
Sbjct: 92 TRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTYATWKLSGFPKNRVVG 147
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
T+LD R +AE ++ V+ ++G H G T P+ S A
Sbjct: 148 SGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR +L N I + I+ V + + +NPV+ + K +G+ R +
Sbjct: 90 TRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD---ILTYATWKFSGLPKERVIGS 146
Query: 62 VTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
TTLD R ++E G P +V +IG H G T +P+ S A
Sbjct: 147 GTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHA 189
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
TR DL N N I++ I+ + + + + +NPV+ I K F R+ G
Sbjct: 93 TRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVG 148
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQA 105
T+LD R +A+ ++ V+ ++G H G T P+ S A
Sbjct: 149 SGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R +L N +I + II V + +P + ++SNPV+ I V K F R+ G
Sbjct: 104 SRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVD----ILTYVAWKISGFPKNRVIG 159
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLIS 103
LD R + E G++ + ++G H G + +P+ S
Sbjct: 160 SGCNLDSARFRYLMGERLGVHALSCHGWILGEH-GDSSVPVWS 201
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 87 VPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQE 125
+ VIG AGI ++P+I++ TPS+S + ++ A TGR+QE
Sbjct: 18 LAVIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQE 54
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 87 VPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQE 125
+ VIG AGI ++P+I++ TPS+S + ++ A TGR+QE
Sbjct: 16 LAVIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQE 52
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 87 VPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQE 125
+ VIG AGI ++P+I++ TPS+S + ++ A TGR+QE
Sbjct: 18 LAVIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQE 54
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Query: 87 VPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQE 125
+ VIG AGI ++P+I++ TPS+S + ++ A TGR+QE
Sbjct: 18 LAVIGESAGI-VLPIIAEVTPSMSKSEGRVIA-TGRLQE 54
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R DL N N +I+ I+K V + + + +NPV+ I K F R+ G
Sbjct: 89 SRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIG 144
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHA 94
T+LD R + + ++P V+ ++G H
Sbjct: 145 SGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHG 178
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKA-LIGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
MTR+DL NA I + K + P + II NP + T + L +G+ P ++
Sbjct: 92 MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLV---TLIYSGL-KPSQV 147
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDV-NVPVIGGHA 94
+ LD R + +A+ G+ + V N GGH
Sbjct: 148 TTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From
Silicibacter Pomeroyi
Length = 391
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 33 ISNPVNSTVPIAAEVLKKAGV-------FDPRRLFGVTTLDIVRANTFVAE 76
+S+ + + AAE+L+KAGV FDP R G RA + E
Sbjct: 320 VSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEE 370
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 11 ASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV-TTLDIVR 69
+S+V+ + + E ++ +ISNPV+ + V F ++ G T LD R
Sbjct: 99 SSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTG----FPAHKVIGTGTLLDTAR 154
Query: 70 ANTFVAEAKGLNPTDVNVPVIGGH 93
V EA L+P V+ +G H
Sbjct: 155 MQRAVGEAFDLDPRSVSGYNLGEH 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,784,390
Number of Sequences: 62578
Number of extensions: 231206
Number of successful extensions: 780
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 78
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)