Query psy9933
Match_columns 208
No_of_seqs 110 out of 1120
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 6E-53 1.3E-57 367.1 20.9 201 1-205 84-310 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 1.2E-52 2.6E-57 365.5 22.1 202 1-206 83-311 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 7.4E-52 1.6E-56 358.1 19.5 195 1-205 85-311 (313)
4 PRK05086 malate dehydrogenase; 100.0 5.5E-50 1.2E-54 349.4 22.1 202 1-207 85-312 (312)
5 KOG1495|consensus 100.0 4.5E-50 9.8E-55 335.7 18.9 189 1-199 104-328 (332)
6 cd05290 LDH_3 A subgroup of L- 100.0 7.5E-50 1.6E-54 347.6 19.8 188 1-198 84-306 (307)
7 KOG1494|consensus 100.0 1.5E-48 3.2E-53 328.0 19.6 203 1-207 112-341 (345)
8 PTZ00325 malate dehydrogenase; 100.0 6E-48 1.3E-52 337.1 23.2 199 1-207 92-319 (321)
9 PLN00135 malate dehydrogenase 100.0 1.3E-47 2.8E-52 333.5 22.2 195 1-205 74-308 (309)
10 PLN00106 malate dehydrogenase 100.0 2.4E-47 5.2E-52 333.6 23.1 195 1-199 102-322 (323)
11 TIGR01759 MalateDH-SF1 malate 100.0 1.9E-47 4.1E-52 334.5 18.2 191 1-201 95-323 (323)
12 TIGR01771 L-LDH-NAD L-lactate 100.0 3.5E-47 7.6E-52 329.9 17.6 186 1-196 80-299 (299)
13 cd05293 LDH_1 A subgroup of L- 100.0 9.8E-47 2.1E-51 328.8 20.1 189 1-199 87-311 (312)
14 cd05291 HicDH_like L-2-hydroxy 100.0 1.3E-46 2.7E-51 327.4 20.3 189 1-199 84-305 (306)
15 cd00704 MDH Malate dehydrogena 100.0 2.5E-46 5.4E-51 327.6 20.9 192 1-202 92-323 (323)
16 PLN02602 lactate dehydrogenase 100.0 2.9E-46 6.3E-51 329.9 21.0 191 1-201 121-348 (350)
17 TIGR01763 MalateDH_bact malate 100.0 3.4E-46 7.3E-51 324.6 19.6 190 1-200 85-304 (305)
18 PRK05442 malate dehydrogenase; 100.0 2.5E-46 5.5E-51 327.8 18.8 193 1-204 96-325 (326)
19 cd00300 LDH_like L-lactate deh 100.0 1.6E-45 3.4E-50 319.8 18.1 188 1-198 82-299 (300)
20 cd05292 LDH_2 A subgroup of L- 100.0 3.5E-45 7.6E-50 318.7 20.2 190 1-200 83-307 (308)
21 PRK00066 ldh L-lactate dehydro 100.0 4.6E-45 9.9E-50 318.8 20.8 191 1-201 89-313 (315)
22 TIGR01756 LDH_protist lactate 100.0 6.4E-45 1.4E-49 317.2 20.9 194 1-205 76-312 (313)
23 TIGR01757 Malate-DH_plant mala 100.0 1.2E-44 2.6E-49 322.3 20.6 195 1-205 136-368 (387)
24 PTZ00117 malate dehydrogenase; 100.0 9.8E-44 2.1E-48 310.9 22.8 194 1-204 89-317 (319)
25 cd01338 MDH_choloroplast_like 100.0 4.6E-44 1E-48 313.2 19.9 192 1-202 94-321 (322)
26 PLN00112 malate dehydrogenase 100.0 1E-43 2.2E-48 320.7 21.6 195 1-205 192-424 (444)
27 TIGR01758 MDH_euk_cyt malate d 100.0 1.4E-43 3E-48 310.4 21.2 193 1-202 91-323 (324)
28 PTZ00082 L-lactate dehydrogena 100.0 3.5E-43 7.5E-48 307.6 21.7 189 2-200 96-319 (321)
29 cd05294 LDH-like_MDH_nadp A la 100.0 3E-43 6.5E-48 306.7 20.1 189 1-199 88-307 (309)
30 cd01336 MDH_cytoplasmic_cytoso 100.0 2.2E-43 4.8E-48 309.3 18.4 190 1-201 94-324 (325)
31 cd01339 LDH-like_MDH L-lactate 100.0 1.5E-41 3.2E-46 294.6 20.2 189 1-199 82-300 (300)
32 PRK06223 malate dehydrogenase; 100.0 9.3E-41 2E-45 290.1 20.9 191 1-201 86-306 (307)
33 cd05295 MDH_like Malate dehydr 100.0 3.8E-40 8.1E-45 297.6 19.3 189 1-201 215-450 (452)
34 cd00650 LDH_MDH_like NAD-depen 100.0 1.4E-35 3.1E-40 252.7 17.5 156 1-198 86-262 (263)
35 PF02866 Ldh_1_C: lactate/mala 100.0 7.3E-32 1.6E-36 217.0 14.6 138 63-205 1-174 (174)
36 KOG1496|consensus 99.9 3E-23 6.4E-28 172.3 13.9 196 1-205 96-330 (332)
37 cd05197 GH4_glycoside_hydrolas 99.7 9.5E-17 2.1E-21 145.5 6.8 88 7-106 116-204 (425)
38 PF00056 Ldh_1_N: lactate/mala 99.6 1.6E-16 3.4E-21 123.9 5.7 57 1-61 85-141 (141)
39 cd05296 GH4_P_beta_glucosidase 99.5 2.9E-14 6.4E-19 129.1 7.3 79 7-93 117-196 (419)
40 PRK15076 alpha-galactosidase; 99.5 7.8E-14 1.7E-18 126.8 6.4 82 2-93 107-199 (431)
41 cd05297 GH4_alpha_glucosidase_ 99.2 7E-11 1.5E-15 107.4 8.0 81 5-93 116-197 (423)
42 cd05298 GH4_GlvA_pagL_like Gly 98.9 2.2E-09 4.8E-14 97.9 7.6 78 7-93 116-196 (437)
43 PF02056 Glyco_hydro_4: Family 96.9 0.0048 1E-07 50.2 8.0 66 7-79 117-182 (183)
44 COG1486 CelF Alpha-galactosida 96.6 0.0068 1.5E-07 55.4 7.2 77 9-93 121-200 (442)
45 cd05298 GH4_GlvA_pagL_like Gly 59.0 45 0.00098 30.7 7.6 54 145-199 317-392 (437)
46 PF11239 DUF3040: Protein of u 56.0 13 0.00028 25.9 2.8 19 178-196 2-20 (82)
47 PRK09458 pspB phage shock prot 52.9 36 0.00078 23.6 4.4 28 178-205 35-65 (75)
48 PF05559 DUF763: Protein of un 52.1 92 0.002 27.6 7.9 70 11-97 21-94 (319)
49 PLN02417 dihydrodipicolinate s 49.0 45 0.00097 28.6 5.6 50 63-126 17-66 (280)
50 TIGR00246 tRNA_RlmH_YbeA rRNA 45.9 1.4E+02 0.003 23.5 7.4 80 12-93 17-104 (153)
51 COG0329 DapA Dihydrodipicolina 45.5 58 0.0013 28.3 5.8 74 63-154 20-98 (299)
52 cd00952 CHBPH_aldolase Trans-o 44.9 53 0.0011 28.6 5.4 50 63-126 24-73 (309)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 44.7 62 0.0013 27.9 5.8 50 63-126 16-65 (294)
54 PF02310 B12-binding: B12 bind 43.2 88 0.0019 22.4 5.7 14 18-31 21-34 (121)
55 cd00408 DHDPS-like Dihydrodipi 42.1 74 0.0016 26.9 5.9 50 63-126 13-62 (281)
56 cd00762 NAD_bind_malic_enz NAD 41.9 56 0.0012 28.0 4.9 45 15-64 122-168 (254)
57 TIGR00674 dapA dihydrodipicoli 40.7 80 0.0017 26.9 5.9 50 63-126 14-63 (285)
58 cd00954 NAL N-Acetylneuraminic 40.2 88 0.0019 26.8 6.0 50 63-126 16-66 (288)
59 KOG0652|consensus 40.1 67 0.0014 28.2 5.1 66 14-83 295-363 (424)
60 cd00953 KDG_aldolase KDG (2-ke 38.6 82 0.0018 26.9 5.6 50 63-126 15-64 (279)
61 PRK04147 N-acetylneuraminate l 38.4 98 0.0021 26.6 6.1 51 63-126 19-69 (293)
62 PF06514 PsbU: Photosystem II 37.9 17 0.00038 26.2 1.1 22 169-190 47-68 (93)
63 PRK02628 nadE NAD synthetase; 37.4 1.3E+02 0.0027 29.4 7.2 81 11-93 346-436 (679)
64 TIGR03249 KdgD 5-dehydro-4-deo 36.7 79 0.0017 27.2 5.2 50 63-126 21-70 (296)
65 cd00553 NAD_synthase NAD+ synt 36.3 2.2E+02 0.0047 23.7 7.7 72 11-86 8-85 (248)
66 PF04201 TPD52: Tumour protein 36.0 78 0.0017 25.3 4.6 29 177-205 24-52 (162)
67 PRK09325 coenzyme F420-reducin 35.7 85 0.0018 27.0 5.2 66 22-90 89-163 (282)
68 TIGR03289 frhB coenzyme F420 h 35.1 79 0.0017 27.2 4.9 67 21-90 86-161 (275)
69 COG1377 FlhB Flagellar biosynt 34.1 75 0.0016 28.7 4.7 66 11-81 245-311 (363)
70 PF06711 DUF1198: Protein of u 33.5 32 0.0007 26.8 2.0 36 58-93 13-52 (148)
71 PF02540 NAD_synthase: NAD syn 32.2 1.2E+02 0.0025 25.6 5.4 69 13-85 5-79 (242)
72 cd08060 MPN_UPF0172 Mov34/MPN/ 32.0 60 0.0013 26.2 3.5 25 12-36 89-113 (182)
73 cd00951 KDGDH 5-dehydro-4-deox 31.9 1E+02 0.0023 26.4 5.2 50 63-126 16-65 (289)
74 PRK00488 pheS phenylalanyl-tRN 31.7 34 0.00073 30.6 2.1 39 165-203 33-73 (339)
75 COG1035 FrhB Coenzyme F420-red 31.1 1.4E+02 0.0031 26.6 5.9 75 13-91 129-212 (332)
76 cd05312 NAD_bind_1_malic_enz N 30.5 1.1E+02 0.0024 26.6 5.0 45 15-64 121-167 (279)
77 cd02640 R3H_NRF R3H domain of 30.4 64 0.0014 21.2 2.8 21 174-194 20-41 (60)
78 cd00950 DHDPS Dihydrodipicolin 30.3 1.5E+02 0.0033 25.1 5.9 50 63-126 16-65 (284)
79 PRK03170 dihydrodipicolinate s 30.0 1.6E+02 0.0034 25.2 6.0 49 64-126 18-66 (292)
80 TIGR00683 nanA N-acetylneurami 29.3 1.6E+02 0.0036 25.2 6.0 50 63-126 16-66 (290)
81 PF00701 DHDPS: Dihydrodipicol 28.4 88 0.0019 26.6 4.1 49 64-126 18-66 (289)
82 PRK13364 protocatechuate 4,5-d 27.6 73 0.0016 27.5 3.4 28 11-39 34-61 (278)
83 PRK03620 5-dehydro-4-deoxygluc 27.4 1.7E+02 0.0038 25.2 5.8 50 63-126 23-72 (303)
84 PF03665 UPF0172: Uncharacteri 27.0 78 0.0017 25.9 3.4 24 12-35 95-118 (196)
85 COG4821 Uncharacterized protei 26.9 84 0.0018 26.3 3.5 37 25-68 103-143 (243)
86 PF09011 HMG_box_2: HMG-box do 26.7 1.5E+02 0.0033 19.6 4.3 26 178-203 45-70 (73)
87 PRK13980 NAD synthetase; Provi 26.3 3.3E+02 0.0072 22.9 7.3 70 12-85 16-91 (265)
88 PF08899 DUF1844: Domain of un 26.3 82 0.0018 21.8 2.8 19 178-196 54-72 (74)
89 COG1454 EutG Alcohol dehydroge 26.2 1.2E+02 0.0027 27.4 4.8 66 9-77 41-111 (377)
90 PF03701 UPF0181: Uncharacteri 25.5 1.2E+02 0.0026 19.4 3.2 25 175-202 4-28 (51)
91 cd06007 R3H_DEXH_helicase R3H 25.0 93 0.002 20.4 2.8 23 172-194 17-40 (59)
92 PF08938 HBS1_N: HBS1 N-termin 24.8 13 0.00028 25.7 -1.4 21 178-198 19-39 (79)
93 TIGR01915 npdG NADPH-dependent 24.4 3.5E+02 0.0077 21.8 6.9 26 14-39 81-106 (219)
94 COG1486 CelF Alpha-galactosida 24.1 3E+02 0.0065 25.6 6.9 56 145-201 320-397 (442)
95 PF04432 FrhB_FdhB_C: Coenzyme 24.0 1.7E+02 0.0037 22.6 4.8 61 27-91 4-71 (161)
96 TIGR02976 phageshock_pspB phag 23.6 2.2E+02 0.0047 19.7 4.5 28 178-205 35-65 (75)
97 PF03949 Malic_M: Malic enzyme 23.4 1.5E+02 0.0033 25.3 4.6 44 15-64 122-168 (255)
98 PF15605 Toxin_52: Putative to 23.2 1.8E+02 0.004 21.4 4.3 37 170-206 66-102 (103)
99 PRK00103 rRNA large subunit me 23.0 3.8E+02 0.0082 21.0 7.5 81 12-93 18-107 (157)
100 PF11458 Mistic: Membrane-inte 22.8 2E+02 0.0044 20.0 4.2 28 178-205 2-29 (84)
101 cd07950 Gallate_Doxase_N The N 22.6 1E+02 0.0022 26.6 3.4 31 8-39 31-61 (277)
102 PF13778 DUF4174: Domain of un 22.4 2.1E+02 0.0046 21.1 4.7 46 51-96 36-91 (118)
103 PTZ00323 NAD+ synthase; Provis 22.3 3.8E+02 0.0082 23.4 6.9 69 16-86 36-112 (294)
104 cd07949 PCA_45_Doxase_B_like_1 22.2 1E+02 0.0022 26.5 3.4 26 11-37 34-59 (276)
105 PRK15454 ethanol dehydrogenase 21.8 2.7E+02 0.0059 25.1 6.2 63 10-75 62-129 (395)
106 PF02912 Phe_tRNA-synt_N: Amin 21.4 5.2 0.00011 27.4 -3.9 39 165-203 17-57 (73)
107 PF02590 SPOUT_MTase: Predicte 20.9 3.5E+02 0.0076 21.1 5.9 119 11-132 17-151 (155)
108 PRK05114 hypothetical protein; 20.7 1.5E+02 0.0032 19.5 3.0 25 175-202 4-28 (59)
109 PF14164 YqzH: YqzH-like prote 20.6 1.4E+02 0.0031 20.0 3.1 19 178-196 25-43 (64)
110 PF06667 PspB: Phage shock pro 20.5 2.6E+02 0.0056 19.3 4.4 28 178-205 35-65 (75)
111 cd02636 R3H_sperm-antigen R3H 20.4 1.3E+02 0.0027 20.1 2.7 23 170-192 16-38 (61)
112 PF09581 Spore_III_AF: Stage I 20.0 63 0.0014 25.7 1.5 26 64-89 163-188 (188)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6e-53 Score=367.05 Aligned_cols=201 Identities=65% Similarity=0.953 Sum_probs=186.1
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|+||+..|++|+++++++|++++|++++|++|||+|+|++++++++|+.++||++||+|+|+|||+||++++|+++|+
T Consensus 84 ~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~l~v 163 (310)
T cd01337 84 MTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGL 163 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHHhCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHhh---cccccCCccchHH-HHHHHHHhhhc
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLKN---GIEKNLGLGKLSD-FEKERQQFSPF 155 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~~---~k~~~~g~~~~~~-~a~~~~i~ai~ 155 (208)
+|++|++||||||||++|||+||++.+..+++++++++|.++++++ +++.. || |+|+||+ .|+++++++|+
T Consensus 164 ~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gk----g~t~~~~a~a~~~iv~aIl 239 (310)
T cd01337 164 DPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGA----GSATLSMAYAGARFANSLL 239 (310)
T ss_pred CHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCC----CCcchhHHHHHHHHHHHHH
Confidence 9999999999999889999999999986667777789999999998 55543 57 9999999 99999999996
Q ss_pred -C---C-------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 156 -I---K-------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 156 -~---~-------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~ 205 (208)
| . ..++||| +|++||++++++++|+++|+++|++|++.|++.++++++|+
T Consensus 240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 1 0 2468999 99999999999834999999999999999999999999874
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.2e-52 Score=365.53 Aligned_cols=202 Identities=65% Similarity=0.943 Sum_probs=185.1
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|+||+..|++|+++++++|++++|++++|++|||+|+|++++++++|+.+|||++||+|+|+|||+|||+++|+++++
T Consensus 83 ~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l~v 162 (312)
T TIGR01772 83 MTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGK 162 (312)
T ss_pred ccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHhh---cccccCCccchHH-HHHHHHHhhhc
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLKN---GIEKNLGLGKLSD-FEKERQQFSPF 155 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~~---~k~~~~g~~~~~~-~a~~~~i~ai~ 155 (208)
+|++|++|||||||+++|+|+||+++....++++++++|.++++++ +++.. || |+|+||+ .|+++++++|+
T Consensus 163 ~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gk----g~t~~~ia~a~~~iv~ail 238 (312)
T TIGR01772 163 DPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGA----GSATLSMAFAGARFVLSLV 238 (312)
T ss_pred CHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCC----CChhHHHHHHHHHHHHHHH
Confidence 9999999999999556999999999843336666789999999998 66544 57 9999999 99999999986
Q ss_pred ----CC--------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9933 156 ----IK--------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 206 (208)
Q Consensus 156 ----~~--------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~ 206 (208)
|. ..++||| ||++||++++++|+||++|+++|++|++.|++.+++|++|+.
T Consensus 239 ~~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 239 RGLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred HhhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 2578999 999999999998569999999999999999999999999874
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.4e-52 Score=358.11 Aligned_cols=195 Identities=38% Similarity=0.495 Sum_probs=176.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|||+|||..|++|+++++++++++|||++++|+|||||+|| |++|+.+|+|++||||++ .|||+||+++||++++
T Consensus 85 mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~t----y~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~ 160 (313)
T COG0039 85 MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILT----YIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred CCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHH----HHHHHhcCCCccceecccchHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999986 478999999999999996 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCC----CCCC----CCHHHHHHHHHHHHHH-HHHhhcccccCCc-cchHH-HHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQAT----PSVS----FPDDQLKALTGRIQEA-VSLKNGIEKNLGL-GKLSD-FEKE 148 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~----~~~~----~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~-~~~~~-~a~~ 148 (208)
++|++|++|||||| |++|||+||+++ |..+ ..++++++|.++||++ .++...| |+ |+||+ .|++
T Consensus 161 v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k----G~~t~~~~A~a~a 235 (313)
T COG0039 161 VSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK----GAGTYYGPAAALA 235 (313)
T ss_pred CChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc----CccchhhHHHHHH
Confidence 99999999999999 999999999998 3322 3346789999999998 6655555 55 99999 9999
Q ss_pred HHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 149 RQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 149 ~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~ 205 (208)
+++++|+ | + ++++||+ +|++||++++++ +|+++|+++|++|++.||+.++.+..++
T Consensus 236 ~~~~ail~d~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~ 311 (313)
T COG0039 236 RMVEAILRDEKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELV 311 (313)
T ss_pred HHHHHHHcCCCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999996 1 1 4679999 999999999999 7999999999999999999999998765
No 4
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-50 Score=349.38 Aligned_cols=202 Identities=54% Similarity=0.844 Sum_probs=184.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|+|++..|++|++++++++.+++|+++++++|||+|+||+++.+.+++.+|||++||||+|+|||+||++++|+++|+
T Consensus 85 ~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia~~l~~ 164 (312)
T PRK05086 85 MDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGK 164 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHh---hcccccCCccchHH-HHHHHHHhhhc
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLK---NGIEKNLGLGKLSD-FEKERQQFSPF 155 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~---~~k~~~~g~~~~~~-~a~~~~i~ai~ 155 (208)
+|++|+++|||||||+++||+||++ ....++++++++|.++++++ +++. .|| |+|+||+ .|+++++++|+
T Consensus 165 ~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~----g~t~~~~a~a~~~~v~ai~ 239 (312)
T PRK05086 165 QPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGG----GSATLSMGQAAARFGLSLV 239 (312)
T ss_pred ChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCC----CCchhhHHHHHHHHHHHHH
Confidence 9999999999999766999999999 43457777799999999998 4443 367 8999999 99999999996
Q ss_pred -C---C-------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9933 156 -I---K-------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207 (208)
Q Consensus 156 -~---~-------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~~ 207 (208)
+ . .+++||| ||++||++++++|+|+++|+++|++|++.|++.++++++|+++
T Consensus 240 ~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred hcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2 1 1468899 9999999999986799999999999999999999999999874
No 5
>KOG1495|consensus
Probab=100.00 E-value=4.5e-50 Score=335.74 Aligned_cols=189 Identities=22% Similarity=0.296 Sum_probs=173.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
+||++|+++|+.|||.++|++.+|.||++++|+|||||+|| |+.||.+|||++||||+| .|||+|||++++++||
T Consensus 104 esRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilT----Yv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg 179 (332)
T KOG1495|consen 104 ESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILT----YVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLG 179 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHH----HHHHHHcCCcccceeccCcCccHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999986 578999999999999998 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC------------CCCCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-H
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS------------VSFPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F 145 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~------------~~~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~ 145 (208)
++|++++++||||| ||+.||+||.+... .+.+++.|+++.+++.++ |++..-| |+|.|++ .
T Consensus 180 ~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK----GyTswaIgl 254 (332)
T KOG1495|consen 180 VHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK----GYTSWAIGL 254 (332)
T ss_pred CCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc----CchHHHHHH
Confidence 99999999999999 99999999999631 124677899999999998 8888788 9999999 9
Q ss_pred HHHHHHhhhc-----------------CCCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-----------------IKTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 146 a~~~~i~ai~-----------------~~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
++++++++|+ +..+++||| +|++|+..+++. +|+++|.++|++|++.|.+..+
T Consensus 255 sva~l~~ail~n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~~~q~ 328 (332)
T KOG1495|consen 255 SVADLAQAILRNLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLLEAQK 328 (332)
T ss_pred HHHHHHHHHHhCcCceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 235789999 999999999999 8999999999999999998443
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.5e-50 Score=347.64 Aligned_cols=188 Identities=24% Similarity=0.321 Sum_probs=169.9
Q ss_pred CC--HHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHH
Q psy9933 1 MT--RDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEA 77 (208)
Q Consensus 1 ~s--R~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~ 77 (208)
|| |+||+..|++|+++++++++++||++++||+|||+|+|| +++|+.+|||++||||+| .|||+||++++|++
T Consensus 84 ~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t----~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 159 (307)
T cd05290 84 NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAV----YIAATEFDYPANKVIGTGTMLDTARLRRIVADK 159 (307)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHH----HHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence 56 799999999999999999999999999999999999985 578999999999999996 59999999999999
Q ss_pred hCCCCCccccceeccCCCCceeecccCCCCC----CCC------CHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-H
Q psy9933 78 KGLNPTDVNVPVIGGHAGITIIPLISQATPS----VSF------PDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F 145 (208)
Q Consensus 78 l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~~------~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~ 145 (208)
+|++|++|++|||||| |++|+|+||++++. .++ ++.++++|.++++++ +++..+| |+|+|++ .
T Consensus 160 l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K----G~t~~~ia~ 234 (307)
T cd05290 160 YGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK----GWTNAGIAK 234 (307)
T ss_pred hCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc----CeehHHHHH
Confidence 9999999999999999 99999999999742 111 233578999999998 8888888 9999999 9
Q ss_pred HHHHHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 198 (208)
Q Consensus 146 a~~~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i 198 (208)
++++++++|+ | + +.++||| ||++||++++++ +||++|+++|++|++.|++.+
T Consensus 235 a~~~ii~ail~d~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 235 SASRLIKAILLDERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999996 1 1 3578999 999999999999 899999999999999999865
No 7
>KOG1494|consensus
Probab=100.00 E-value=1.5e-48 Score=328.04 Aligned_cols=203 Identities=61% Similarity=0.895 Sum_probs=193.2
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|||+|||..|+.|+++++..+.++||++++.++||||+.++|++++++++.+.|+|+|++|+|+||..|+++|+++.+++
T Consensus 112 MTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~ 191 (345)
T KOG1494|consen 112 MTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNL 191 (345)
T ss_pred CcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH----HHHhhcccccCCccchHH-HHHHHHHhhh
Q psy9933 81 NP-TDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA----VSLKNGIEKNLGLGKLSD-FEKERQQFSP 154 (208)
Q Consensus 81 ~~-~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~----~~~~~~k~~~~g~~~~~~-~a~~~~i~ai 154 (208)
+| ++++++|||+|+|.|++|++|++.|...|++++++.++.+++++ +++|.|+ ||+++|| +|.++|+.++
T Consensus 192 ~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGa----GSATLSMAyAga~fa~s~ 267 (345)
T KOG1494|consen 192 DPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGA----GSATLSMAYAGAKFADSL 267 (345)
T ss_pred CchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCC----CchhhhHHHHHHHHHHHH
Confidence 99 55999999999999999999999998889999999999999998 8889999 9999999 9999999998
Q ss_pred c----CC-------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9933 155 F----IK-------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207 (208)
Q Consensus 155 ~----~~-------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~~ 207 (208)
+ +. .+-.||+ ||++||+++.++++||++|++.|+.+.+.||++|+++.+|+..
T Consensus 268 lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~~ 341 (345)
T KOG1494|consen 268 LRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGVTFVKS 341 (345)
T ss_pred HHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 6 10 1456788 9999999999999999999999999999999999999999853
No 8
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=6e-48 Score=337.13 Aligned_cols=199 Identities=58% Similarity=0.876 Sum_probs=180.3
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|+|++..|++|++++++++++++|+++++++|||+|+|+|++...+++.++|||+||+|+|+|||+|||++||+++|+
T Consensus 92 ~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~la~~l~v 171 (321)
T PTZ00325 92 MTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGM 171 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHHHHHhCc
Confidence 68999999999999999999999999999999999999998865444579999999999999999999999999999999
Q ss_pred CCCccccceeccCCCC-ceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHhh---cccccCCccchHH-HHHHHHHhhh
Q psy9933 81 NPTDVNVPVIGGHAGI-TIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLKN---GIEKNLGLGKLSD-FEKERQQFSP 154 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~-~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~~---~k~~~~g~~~~~~-~a~~~~i~ai 154 (208)
+|++|++|||||| |+ +|||+||++. ..++++++++|.++++++ +++.. || |+|+||+ +++++++++|
T Consensus 172 ~~~~V~~~VlGeH-Gd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~k----g~t~~g~a~a~~~i~~ai 244 (321)
T PTZ00325 172 NPYDVNVPVVGGH-SGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGA----GSATLSMAYAAAEWSTSV 244 (321)
T ss_pred ChhheEEEEEeec-CCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCC----CCchHHHHHHHHHHHHHH
Confidence 9999999999999 78 8999999994 236667799999999988 55544 66 8999999 9999999999
Q ss_pred c-C---C--------------CCcEEEe----ecCCeeEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9933 155 F-I---K--------------TFASFFS----PQKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207 (208)
Q Consensus 155 ~-~---~--------------~~~~~~s----ig~~Gv~~i~~-lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~~ 207 (208)
+ | . ..++|+| ||++||+++++ + +|+++|+++|++|++.|++.++++++|+++
T Consensus 245 l~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~ 319 (321)
T PTZ00325 245 LKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK 319 (321)
T ss_pred HhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 2 1 2468999 99999999999 7 899999999999999999999999999976
No 9
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1.3e-47 Score=333.46 Aligned_cols=195 Identities=23% Similarity=0.262 Sum_probs=174.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEV-APKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~-~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l 78 (208)
|+|+|++..|++|+++++++|+++ +|+|+++|+|||+|+|| +++++.+|+|++||||+| .|||+|||++||+++
T Consensus 74 ~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t----~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l 149 (309)
T PLN00135 74 MERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNA----LILKEFAPSIPEKNITCLTRLDHNRALGQISERL 149 (309)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHH----HHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHh
Confidence 799999999999999999999996 89999999999999986 478899999999999997 599999999999999
Q ss_pred CCCCCcc-ccceeccCCCCceeecccCCCC----CC----CC-CHHH--HHHHHHHHHHH-HHHhhc-ccccCCccchHH
Q psy9933 79 GLNPTDV-NVPVIGGHAGITIIPLISQATP----SV----SF-PDDQ--LKALTGRIQEA-VSLKNG-IEKNLGLGKLSD 144 (208)
Q Consensus 79 ~v~~~~v-~~~ViGeH~g~~~vp~~S~~~~----~~----~~-~~~~--~~~l~~~v~~~-~~~~~~-k~~~~g~~~~~~ 144 (208)
+++|++| ++|||||| |++++|+||++++ .. +| ++++ .++|.++++++ +++.++ | |+|+||+
T Consensus 150 ~v~~~~V~~~~VlGeH-G~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~k----g~t~~~i 224 (309)
T PLN00135 150 GVPVSDVKNVIIWGNH-SSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKARK----LSSALSA 224 (309)
T ss_pred CcChhhceeeEEEEcC-CCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHccC----ccHHHHH
Confidence 9999999 69999999 8899999999976 21 22 3333 68899999998 776654 6 8999999
Q ss_pred -HHHHHHHhhhc---C----------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 145 -FEKERQQFSPF---I----------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 145 -~a~~~~i~ai~---~----------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
.|+++++++|+ + .+.++||| +|++|++.++++ +|+++|+++|++|++.|+++.++
T Consensus 225 a~a~~~iv~ai~~~~~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~ 303 (309)
T PLN00135 225 ASSACDHIRDWVLGTPEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKEL 303 (309)
T ss_pred HHHHHHHHHHHHhCCcCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999974 1 13678999 999999999999 89999999999999999999999
Q ss_pred HHHHH
Q psy9933 201 GEEFV 205 (208)
Q Consensus 201 ~~~~~ 205 (208)
+++++
T Consensus 304 ~~~~~ 308 (309)
T PLN00135 304 AYSCL 308 (309)
T ss_pred HHHHh
Confidence 98875
No 10
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.4e-47 Score=333.59 Aligned_cols=195 Identities=59% Similarity=0.912 Sum_probs=178.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|+|++..|++|++++++++++++|+++++++|||+|.+++++++++++.++|||+||+|+|+||++||++++|+++|+
T Consensus 102 ~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv 181 (323)
T PLN00106 102 MTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGL 181 (323)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH-HHHhh---cccccCCccchHH-HHHHHHHhhhc
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA-VSLKN---GIEKNLGLGKLSD-FEKERQQFSPF 155 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~-~~~~~---~k~~~~g~~~~~~-~a~~~~i~ai~ 155 (208)
+|.+|+++|+|||||++|||+||++.|..+++++++++|.++++++ +++.. || |+|+||+ .++++++++|+
T Consensus 182 ~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~k----g~t~~~~a~a~~~ii~ail 257 (323)
T PLN00106 182 DPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGA----GSATLSMAYAAARFADACL 257 (323)
T ss_pred ChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCC----CCchHHHHHHHHHHHHHHH
Confidence 9999999999999777999999999886567777799999999998 66544 57 9999999 99999999996
Q ss_pred -C---C-----------C-Cc-EEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 156 -I---K-----------T-FA-SFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 156 -~---~-----------~-~~-~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
| . . .+ +||| ||++||++++++++|+++|+++|++|++.|++.++
T Consensus 258 ~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 258 RGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred hccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 2 1 1 23 8999 99999999999856999999999999999998775
No 11
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.9e-47 Score=334.49 Aligned_cols=191 Identities=24% Similarity=0.283 Sum_probs=170.6
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCC-CeEEEEeCCCccccHHHHHHHHHHcC-CCCCCCeEEeehhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAP-KALIGIISNPVNSTVPIAAEVLKKAG-VFDPRRLFGVTTLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p-~~iiivvtNPvD~~~~~~~~~~~~~~-~~~~~~ViG~~~LDs~R~~~~la~~l 78 (208)
|||+||+..|++|+++++++|++++| +++++++|||+|+||| ++|+.+ |||++||||+|.|||+|||+++|+++
T Consensus 95 ~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~----v~~k~s~g~p~~rViG~t~LDs~R~r~~la~~l 170 (323)
T TIGR01759 95 MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNAL----IASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKA 170 (323)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHH----HHHHHcCCCCHHHEEEeeHHHHHHHHHHHHHHh
Confidence 79999999999999999999999998 9999999999999865 688889 99999999998899999999999999
Q ss_pred CCCCCccc-cceeccCCCCceeecccCCCCC----CC-CCHHH--HHHHHHHHHHH-HHHhhcccccCCccchH-H-HHH
Q psy9933 79 GLNPTDVN-VPVIGGHAGITIIPLISQATPS----VS-FPDDQ--LKALTGRIQEA-VSLKNGIEKNLGLGKLS-D-FEK 147 (208)
Q Consensus 79 ~v~~~~v~-~~ViGeH~g~~~vp~~S~~~~~----~~-~~~~~--~~~l~~~v~~~-~~~~~~k~~~~g~~~~~-~-~a~ 147 (208)
|++|++|+ .+||||| |++++|+||++++. .+ ++++. +++|.++++++ +++..+| |+|.|+ + .|+
T Consensus 171 ~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k----G~t~~~~~a~a~ 245 (323)
T TIGR01759 171 GVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR----GASSAASAANAA 245 (323)
T ss_pred CcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc----CCcchHHHHHHH
Confidence 99999996 5699999 89999999999743 23 33332 78999999998 8887788 999995 6 899
Q ss_pred HHHHhhhc-C----------------C---CCcEEEe----ecCCeeEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF-I----------------K---TFASFFS----PQKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 148 ~~~i~ai~-~----------------~---~~~~~~s----ig~~Gv~~i~~-lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
++++++|+ | + |+++||| ||++||+++++ + +|+++|+++|++|++.|+++++++
T Consensus 246 ~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 246 IDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKLDATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999995 2 1 2468999 99999999999 8 899999999999999999998763
No 12
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=3.5e-47 Score=329.93 Aligned_cols=186 Identities=27% Similarity=0.355 Sum_probs=167.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+||+..|++|++++++++++++|++++|++|||+|+|+ +++++.+|||++||+|+| .|||+||++++|++++
T Consensus 80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t----~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~ 155 (299)
T TIGR01771 80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILT----YVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLG 155 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH----HHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999985 578888999999999996 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCC----CCCC-------CHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-HH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATP----SVSF-------PDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FE 146 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~----~~~~-------~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a 146 (208)
++|++|+++||||| |++|+|+||++++ ..++ ++.++++|.++++++ +++..+| |+|+|++ .|
T Consensus 156 v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k----G~t~~~~a~a 230 (299)
T TIGR01771 156 VDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK----GATYYGIGMA 230 (299)
T ss_pred cCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC----CeeeHHHHHH
Confidence 99999999999999 9999999999974 2222 233578999999998 8887788 9999999 99
Q ss_pred HHHHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy9933 147 KERQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKK 196 (208)
Q Consensus 147 ~~~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~ 196 (208)
+++++++|+ | + ..++||| ||++||++++++ +||++|+++|++|++.||+
T Consensus 231 ~~~~i~ail~d~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 231 VARIVEAILHDENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHcCCCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence 999999996 1 1 1368999 999999999998 8999999999999999974
No 13
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=9.8e-47 Score=328.83 Aligned_cols=189 Identities=22% Similarity=0.279 Sum_probs=172.0
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|||..|++|+++++++|++++|+++++++|||+|+|+ +++++.+|||++||||+| .||++||++++|++++
T Consensus 87 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t----~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l~ 162 (312)
T cd05293 87 ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMT----YVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLG 162 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHH----HHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999975 578899999999999996 6999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC--------CCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-H
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS--------FPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F 145 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~--------~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~ 145 (208)
+++++|+++||||| |++++|+||++++. .+ .+++++++|.++++++ +++..+| |+|+||+ +
T Consensus 163 v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k----g~t~~~~a~ 237 (312)
T cd05293 163 VAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK----GYTSWAIGL 237 (312)
T ss_pred CChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc----CCchHHHHH
Confidence 99999999999999 99999999999742 11 2345588999999998 8887788 9999999 9
Q ss_pred HHHHHHhhhc-C----------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-I----------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 146 a~~~~i~ai~-~----------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
|+++++++|+ | .+.++||| ||++|+++++++ +||++|+++|++|++.|++.++
T Consensus 238 a~~~ii~ail~d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 238 SVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred HHHHHHHHHHcCCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999995 1 23678999 999999999998 8999999999999999998765
No 14
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.3e-46 Score=327.36 Aligned_cols=189 Identities=24% Similarity=0.317 Sum_probs=171.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+||+..|++|+++++++++++||++++|++|||+|+|+ +++++.+|||++||||+| .|||+||++++|++++
T Consensus 84 ~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~----~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~ 159 (306)
T cd05291 84 ETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVIT----YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN 159 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHH----HHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHC
Confidence 79999999999999999999999999999999999999985 577888999999999996 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCC----CC------CCCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-HHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATP----SV------SFPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FEK 147 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~----~~------~~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a~ 147 (208)
++|++|+++||||| |++++|+||+++. .. .+.+++++++.++++++ +++..+| |+|+|++ .|+
T Consensus 160 v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k----g~t~~~~a~a~ 234 (306)
T cd05291 160 VDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK----GATYYGIATAL 234 (306)
T ss_pred CCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc----CccHHHHHHHH
Confidence 99999999999999 8999999999973 21 24456689999999998 8887788 9999999 999
Q ss_pred HHHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 148 ~~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
++++++|+ | + +.++||| +|++||++++++ +|+++|+++|++|++.|++.++
T Consensus 235 ~~~~~ail~~~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 235 ARIVKAILNDENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred HHHHHHHHcCCCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence 99999996 1 1 3478999 999999999998 8999999999999999998775
No 15
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.5e-46 Score=327.58 Aligned_cols=192 Identities=24% Similarity=0.292 Sum_probs=170.3
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcCC-CCCCCeEEeehhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAGV-FDPRRLFGVTTLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~~-~~~~~ViG~~~LDs~R~~~~la~~l 78 (208)
|||+||+..|++|+++++++|+++| |++++||+|||+|+|+| ++++.+| ||++||||+|.|||+|||++||+++
T Consensus 92 ~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~----~~~k~sg~~p~~~vig~t~LDs~R~r~~la~~l 167 (323)
T cd00704 92 MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNAL----IALKNAPNLPPKNFTALTRLDHNRAKAQVARKL 167 (323)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHH----HHHHHcCCCCHHHEEEeeHHHHHHHHHHHHHHh
Confidence 7999999999999999999999996 99999999999999865 6788899 5999999998899999999999999
Q ss_pred CCCCCccc-cceeccCCCCceeecccCCCCC----CC-----CCHH-HHHHHHHHHHHH-HHHhhcccccCCccchH-H-
Q psy9933 79 GLNPTDVN-VPVIGGHAGITIIPLISQATPS----VS-----FPDD-QLKALTGRIQEA-VSLKNGIEKNLGLGKLS-D- 144 (208)
Q Consensus 79 ~v~~~~v~-~~ViGeH~g~~~vp~~S~~~~~----~~-----~~~~-~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~-~- 144 (208)
+++|++|+ ++||||| |++++|+||++++. .+ ++++ +.++|.++++++ +++..+| |+|.|+ +
T Consensus 168 ~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~k----g~t~~~~~a 242 (323)
T cd00704 168 GVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR----GASSAASAA 242 (323)
T ss_pred CcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhcc----CcchhHHHH
Confidence 99999995 6999999 88999999999742 11 3333 367899999998 8887788 999996 7
Q ss_pred HHHHHHHhhhc-C----------------C---CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 145 FEKERQQFSPF-I----------------K---TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 145 ~a~~~~i~ai~-~----------------~---~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
+|+++++++|+ | + |.++||| ||++||++++++ +|+++|+++|++|++.|+++-+.
T Consensus 243 ~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~ 321 (323)
T cd00704 243 KAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEEELIEEKEI 321 (323)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999995 1 1 2567999 999999999999 89999999999999999998876
Q ss_pred HH
Q psy9933 201 GE 202 (208)
Q Consensus 201 ~~ 202 (208)
++
T Consensus 322 ~~ 323 (323)
T cd00704 322 AL 323 (323)
T ss_pred hC
Confidence 53
No 16
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2.9e-46 Score=329.91 Aligned_cols=191 Identities=22% Similarity=0.304 Sum_probs=173.4
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+||+..|++|+++++++|+++||+++++++|||+|+|++ ++++.+|||++||||+| .||++||++++|+++|
T Consensus 121 ~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~----~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~ 196 (350)
T PLN02602 121 ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTY----VAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLD 196 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHH----HHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999865 67888899999999997 6999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCC----CC--------CCCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-H
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATP----SV--------SFPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F 145 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~----~~--------~~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~ 145 (208)
+++++|+++||||| |+++||+||+++. .. .+++++++++.++++++ +++..+| |+|+||+ .
T Consensus 197 v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K----G~t~~gia~ 271 (350)
T PLN02602 197 VNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK----GYTSWAIGY 271 (350)
T ss_pred CCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC----CccHHHHHH
Confidence 99999999999999 8999999999863 11 24556689999999998 8888788 9999999 9
Q ss_pred HHHHHHhhhc-C----------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-I----------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 146 a~~~~i~ai~-~----------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
++++++++|+ | . +.++||| ||++||++++++ +||++|+++|++|++.|++.++.+
T Consensus 272 a~a~ii~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 272 SVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred HHHHHHHHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999995 1 1 1578999 999999999999 899999999999999999987764
No 17
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3.4e-46 Score=324.64 Aligned_cols=190 Identities=26% Similarity=0.388 Sum_probs=170.8
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+||+..|++|+++++++|++++|++++|++|||+|+|++ ++|+.+|||++||||+| .|||+||++++|++|+
T Consensus 85 ~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~----~~~~~sg~~~~rviG~g~~lds~R~~~~la~~l~ 160 (305)
T TIGR01763 85 MSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTY----VAWQKSGFPKERVIGQAGVLDSARFRTFIAMELG 160 (305)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHHHCcCHHHEEEeccchHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999864 67888999999999997 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC-CCHHHHHHHHHHHHHH-HHHhh--cccccCCccchHH-HHHHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS-FPDDQLKALTGRIQEA-VSLKN--GIEKNLGLGKLSD-FEKERQ 150 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~-~~~~~~~~l~~~v~~~-~~~~~--~k~~~~g~~~~~~-~a~~~~ 150 (208)
++|++|+++||||| |++++|+||+++.. .+ ++++++++|.++++++ +++.. || |+|+||+ +++++|
T Consensus 161 v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~~k----g~t~~~~a~~~~~i 235 (305)
T TIGR01763 161 VSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLLKQ----GSAYYAPAASVVEM 235 (305)
T ss_pred cCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHH
Confidence 99999999999999 99999999999732 22 4455689999999998 55544 57 8999999 999999
Q ss_pred Hhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 151 QFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 151 i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
+++|+ | + .+++|+| ||++||++++++ +|+++|+++|++|++.|++.++.
T Consensus 236 ~~ai~~~~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~~ 304 (305)
T TIGR01763 236 VEAILKDRKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCKM 304 (305)
T ss_pred HHHHhCCCCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99996 2 1 1579999 999999999999 89999999999999999988753
No 18
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-46 Score=327.75 Aligned_cols=193 Identities=22% Similarity=0.262 Sum_probs=170.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcC-CCCCCCeEEeehhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAG-VFDPRRLFGVTTLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~-~~~~~~ViG~~~LDs~R~~~~la~~l 78 (208)
|||+||+..|++|+++++++|++|+ |++++|++|||+|+||| ++++.+ |||++||||+|.|||+|||+++|+++
T Consensus 96 ~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~----v~~k~s~g~p~~rViG~t~LDs~R~r~~la~~l 171 (326)
T PRK05442 96 MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNAL----IAMKNAPDLPAENFTAMTRLDHNRALSQLAAKA 171 (326)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHH----HHHHHcCCCCHHHEEeeeHHHHHHHHHHHHHHh
Confidence 7999999999999999999999988 89999999999999865 567777 99999999998899999999999999
Q ss_pred CCCCCccccce-eccCCCCceeecccCCCCC----CC-CCHH--HHHHHHHHHHHH-HHHhhcccccCCccchHH-HH-H
Q psy9933 79 GLNPTDVNVPV-IGGHAGITIIPLISQATPS----VS-FPDD--QLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FE-K 147 (208)
Q Consensus 79 ~v~~~~v~~~V-iGeH~g~~~vp~~S~~~~~----~~-~~~~--~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a-~ 147 (208)
+++|++|++|+ |||| |++++|+||++++. .+ +++. ++++|.++++++ +++..+| |+|+|++ .+ +
T Consensus 172 ~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k----G~t~~~~a~~~~ 246 (326)
T PRK05442 172 GVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR----GASSAASAANAA 246 (326)
T ss_pred CcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc----CCccHHHHHHHH
Confidence 99999999965 8999 89999999999853 23 3333 367899999998 8888788 9999999 77 5
Q ss_pred HHHHhhhc-C------------------CCCcEEEe----ecCCeeEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF-I------------------KTFASFFS----PQKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKGEE 203 (208)
Q Consensus 148 ~~~i~ai~-~------------------~~~~~~~s----ig~~Gv~~i~~-lp~L~~~E~~~l~~sa~~l~~~i~~~~~ 203 (208)
++++++++ + .|+++||| +| +|+++++. + +|+++|+++|++|++.|+++.+.+..
T Consensus 247 ~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~ 324 (326)
T PRK05442 247 IDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLAELEEERDAVKH 324 (326)
T ss_pred HHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999975 2 13578999 99 99999965 8 89999999999999999999988765
Q ss_pred H
Q psy9933 204 F 204 (208)
Q Consensus 204 ~ 204 (208)
.
T Consensus 325 ~ 325 (326)
T PRK05442 325 L 325 (326)
T ss_pred h
Confidence 4
No 19
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=1.6e-45 Score=319.82 Aligned_cols=188 Identities=25% Similarity=0.312 Sum_probs=170.8
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|++|+++++++|+++||+|+++++|||+|+|+ +++|+.+|||++||+|+| .|||+||++++|++++
T Consensus 82 ~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~----~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~ 157 (300)
T cd00300 82 ETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILT----YVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLD 157 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHH----HHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999985 478899999999999996 6999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC---CCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-HHHHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS---FPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FEKERQ 150 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~---~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a~~~~ 150 (208)
+++++|+++|+||| |++++|+||+++.. .+ .++++++++.++++++ +++..+| |+|+||+ ++++++
T Consensus 158 v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k----g~t~~~~a~a~~~~ 232 (300)
T cd00300 158 VDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK----GATNYGIATAIADI 232 (300)
T ss_pred CCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc----CcchHHHHHHHHHH
Confidence 99999999999999 99999999999732 22 2345688999999998 7777788 9999999 999999
Q ss_pred Hhhhc-C-------------C--CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy9933 151 QFSPF-I-------------K--TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 198 (208)
Q Consensus 151 i~ai~-~-------------~--~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i 198 (208)
+++++ + + ++++||| +|++|+++++++ +||++|+++|++|++.|++.+
T Consensus 233 ~~ai~~~~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 233 VKSILLDERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHcCCCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 99996 1 1 2579999 999999999998 899999999999999999865
No 20
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.5e-45 Score=318.66 Aligned_cols=190 Identities=25% Similarity=0.346 Sum_probs=172.3
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+||+..|++|++++++++++++|+|+++++|||+|+|++ ++++.+|||++||||+| .|||+||++++|++++
T Consensus 83 ~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~----~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~ 158 (308)
T cd05292 83 ETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTY----VAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLG 158 (308)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHHHCcCHHHeecccchhhHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999864 67888999999999996 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC------------CCCCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-H
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS------------VSFPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F 145 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~------------~~~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~ 145 (208)
+++++|+++||||| |++++|+||+++.. ..++++++++|.++++++ +++..+| |+|+||+ +
T Consensus 159 v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k----g~t~~~~a~ 233 (308)
T cd05292 159 VDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK----GATYYAIGL 233 (308)
T ss_pred CCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC----CccHHHHHH
Confidence 99999999999999 99999999998621 134556689999999998 8887788 9999999 9
Q ss_pred HHHHHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 146 a~~~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
++++++++|+ | + ..++||| ||++||++++++ +||++|+++|++|++.|++.++.
T Consensus 234 a~~~i~~ail~~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~~ 307 (308)
T cd05292 234 ALARIVEAILRDENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIES 307 (308)
T ss_pred HHHHHHHHHHcCCCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 1 1 1468999 999999999998 89999999999999999988763
No 21
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=4.6e-45 Score=318.81 Aligned_cols=191 Identities=23% Similarity=0.300 Sum_probs=173.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|++|++++++++++++|+++++++|||+|+|++ ++++.+|||++||+|+| .|||+||++++|+++|
T Consensus 89 ~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~----~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l~ 164 (315)
T PRK00066 89 ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY----ATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLD 164 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH----HHHHHhCCCHHHEeecCchHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999999999999865 67788899999999996 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC-----------CCCCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-HH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS-----------VSFPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FE 146 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~-----------~~~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a 146 (208)
++|++|+++||||| |++++|+||++++. ..+++++++++.++++++ .++..+| |+|+||+ ++
T Consensus 165 v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k----g~t~~~~a~~ 239 (315)
T PRK00066 165 VDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK----GATYYGIAMA 239 (315)
T ss_pred CCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC----CeehHHHHHH
Confidence 99999999999999 99999999999842 125557788999999998 7777788 9999999 99
Q ss_pred HHHHHhhhc-C--------------C-CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 147 KERQQFSPF-I--------------K-TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 147 ~~~~i~ai~-~--------------~-~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
+++++++|+ + + ++++||| +|++||++++++ +||++|+++|++|++.|++.+++.
T Consensus 240 ~~~i~~ail~~~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 240 LARITKAILNNENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHcCCCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999995 1 1 3579999 999999999998 899999999999999999998864
No 22
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=6.4e-45 Score=317.22 Aligned_cols=194 Identities=18% Similarity=0.159 Sum_probs=171.0
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCC-eEEEEeCCCccccHHHHHHHH-HHcCCCCCCCeEEee-hhhHHHHHHHHHHH
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPK-ALIGIISNPVNSTVPIAAEVL-KKAGVFDPRRLFGVT-TLDIVRANTFVAEA 77 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~-~iiivvtNPvD~~~~~~~~~~-~~~~~~~~~~ViG~~-~LDs~R~~~~la~~ 77 (208)
|+|+||+..|++|+++++++|++|+|+ +++||+|||+|+||| ++ ++.+|||++ |||+| .|||+|||++||++
T Consensus 76 ~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~----v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~ 150 (313)
T TIGR01756 76 EVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCL----VAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASK 150 (313)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHH----HHHHHcCCCCHH-HEEecccHHHHHHHHHHHHH
Confidence 799999999999999999999999955 889999999999865 55 699999999 99997 59999999999999
Q ss_pred hCCCCCccccc-eeccCCCCceeecccCCCC--CC----C---CCHH-HHHHHHHHHHHH-HHHhhcccccCCccchHH-
Q psy9933 78 KGLNPTDVNVP-VIGGHAGITIIPLISQATP--SV----S---FPDD-QLKALTGRIQEA-VSLKNGIEKNLGLGKLSD- 144 (208)
Q Consensus 78 l~v~~~~v~~~-ViGeH~g~~~vp~~S~~~~--~~----~---~~~~-~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~- 144 (208)
++++|++|+++ ||||| |++|+|+||++++ .. . ++++ ..+++.++++++ +++.++| |+|+|++
T Consensus 151 l~v~~~~V~~~~V~GeH-G~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k----g~t~~~~~ 225 (313)
T TIGR01756 151 LKVPVDHIYHVVVWGNH-AESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR----GFTSAASP 225 (313)
T ss_pred hCcChhheeeeEEEECC-CCceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc----CCcchHHH
Confidence 99999999765 99999 9999999999976 21 1 2332 478899999998 8887788 9999997
Q ss_pred -HHHHHHHhhhc---C---------------C---CCcEEEe----ecCCeeEEecc-CCCCCHHHHHHHHHHHHHHHHH
Q psy9933 145 -FEKERQQFSPF---I---------------K---TFASFFS----PQKNGIEKNLG-LGKLSDFEKELVKAAVPELKKN 197 (208)
Q Consensus 145 -~a~~~~i~ai~---~---------------~---~~~~~~s----ig~~Gv~~i~~-lp~L~~~E~~~l~~sa~~l~~~ 197 (208)
.|+++++++|+ + + +.++||| +|++|++++++ + +|+++|+++|++|++.|+++
T Consensus 226 a~ai~~iv~ail~~~~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e 304 (313)
T TIGR01756 226 VKASLQHMKAWLFGTRPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEE 304 (313)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 59999999995 1 1 1478999 99999999999 9 79999999999999999999
Q ss_pred HHHHHHHH
Q psy9933 198 IAKGEEFV 205 (208)
Q Consensus 198 i~~~~~~~ 205 (208)
.+.+++.+
T Consensus 305 ~~~~~~~~ 312 (313)
T TIGR01756 305 RETALKAL 312 (313)
T ss_pred HHHHHHhh
Confidence 99887754
No 23
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=1.2e-44 Score=322.33 Aligned_cols=195 Identities=25% Similarity=0.253 Sum_probs=171.8
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l 78 (208)
|+|+||+..|++|++++++.|++++ |++++||+|||+|+||+ ++++.+|+||+||||+| .|||+|||++||+++
T Consensus 136 ~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~----v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l 211 (387)
T TIGR01757 136 MERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNAL----IAMKNAPNIPRKNFHALTRLDENRAKCQLALKS 211 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHH----HHHHHcCCCcccEEEecchhHHHHHHHHHHHHH
Confidence 7999999999999999999999987 99999999999999864 77899999999999997 599999999999999
Q ss_pred CCCCCccc-cceeccCCCCceeecccCCCC----CCCC-CHH--HHHHHHHHHHHH-HHHhhcccccCCccch-HH-HHH
Q psy9933 79 GLNPTDVN-VPVIGGHAGITIIPLISQATP----SVSF-PDD--QLKALTGRIQEA-VSLKNGIEKNLGLGKL-SD-FEK 147 (208)
Q Consensus 79 ~v~~~~v~-~~ViGeH~g~~~vp~~S~~~~----~~~~-~~~--~~~~l~~~v~~~-~~~~~~k~~~~g~~~~-~~-~a~ 147 (208)
+++|++|+ +|||||| |++|+|+||+++. ..++ ++. ++++|.++++++ +++.++| |+++| ++ .++
T Consensus 212 ~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~K----G~t~~~s~a~ai 286 (387)
T TIGR01757 212 GKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKW----GRSSAASTAVSI 286 (387)
T ss_pred CcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHH
Confidence 99999995 9999999 8999999999973 2222 222 278999999998 7777788 87777 88 999
Q ss_pred HHHHhhhc----------------CC----CCcEEEe----ecCCeeEEec-cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF----------------IK----TFASFFS----PQKNGIEKNL-GLGKLSDFEKELVKAAVPELKKNIAKGE 202 (208)
Q Consensus 148 ~~~i~ai~----------------~~----~~~~~~s----ig~~Gv~~i~-~lp~L~~~E~~~l~~sa~~l~~~i~~~~ 202 (208)
++++.+++ ++ +.++||| +|++|+++++ ++ +|+++|+++|++|++.|+++-+.++
T Consensus 287 ~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~Sa~~L~~e~~~~~ 365 (387)
T TIGR01757 287 ADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERIRKSEDELLKEKECVA 365 (387)
T ss_pred HHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998774 21 3578999 9999999996 88 8999999999999999999998887
Q ss_pred HHH
Q psy9933 203 EFV 205 (208)
Q Consensus 203 ~~~ 205 (208)
+++
T Consensus 366 ~~~ 368 (387)
T TIGR01757 366 HLI 368 (387)
T ss_pred Hhh
Confidence 754
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-44 Score=310.94 Aligned_cols=194 Identities=24% Similarity=0.378 Sum_probs=174.3
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|++|++++++.+.++||++++|++|||+|+|+ +++++.+++|++||+|+| .|||+||++++|++++
T Consensus 89 ~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t----~~~~~~s~~p~~rviG~gt~lds~R~~~~la~~l~ 164 (319)
T PTZ00117 89 MTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMV----KVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLG 164 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHH----HHHHHhhCCCcccEEEecchHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999985 567889999999999997 6999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----C------CCCHHHHHHHHHHHHHH-HHHhh--cccccCCccchHH-H
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----V------SFPDDQLKALTGRIQEA-VSLKN--GIEKNLGLGKLSD-F 145 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~------~~~~~~~~~l~~~v~~~-~~~~~--~k~~~~g~~~~~~-~ 145 (208)
++|++|+++|+||| |++++|+||++++. . .+++++++++.++++++ +++.. || |+|+||+ +
T Consensus 165 v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~~k----g~t~~~~a~ 239 (319)
T PTZ00117 165 VSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLLKK----GSAFFAPAA 239 (319)
T ss_pred CCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhcCC----CChHHHHHH
Confidence 99999999999999 99999999999632 1 25667789999999998 55544 57 9999999 9
Q ss_pred HHHHHHhhhc-C--------------CC-CcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 146 EKERQQFSPF-I--------------KT-FASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEF 204 (208)
Q Consensus 146 a~~~~i~ai~-~--------------~~-~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~ 204 (208)
++++++++|+ | ++ .++||| ||++||++++++ +|+++|+++|++|++.|++.+++...+
T Consensus 240 a~~~~~~ail~~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 240 AIVAMIEAYLKDEKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAKAL 317 (319)
T ss_pred HHHHHHHHHhcCCCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999996 1 11 368999 999999999998 899999999999999999999877654
No 25
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.6e-44 Score=313.17 Aligned_cols=192 Identities=24% Similarity=0.287 Sum_probs=171.1
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcC-CCCCCCeEEeehhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAG-VFDPRRLFGVTTLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~-~~~~~~ViG~~~LDs~R~~~~la~~l 78 (208)
|||+||+..|++|+++++++|++++ |++++|++|||+|+||| ++++.+ +||++||+|+|.|||+||++++|+++
T Consensus 94 ~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~----~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~l 169 (322)
T cd01338 94 MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNAL----IAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKA 169 (322)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHH----HHHHHcCCCChHheEEehHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999 59999999999999865 667777 59999999997799999999999999
Q ss_pred CCCCCcccc-ceeccCCCCceeecccCCCCC----CC-CCHH--HHHHHHHHHHHH-HHHhhcccccCCccchHH-H-HH
Q psy9933 79 GLNPTDVNV-PVIGGHAGITIIPLISQATPS----VS-FPDD--QLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-F-EK 147 (208)
Q Consensus 79 ~v~~~~v~~-~ViGeH~g~~~vp~~S~~~~~----~~-~~~~--~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~-a~ 147 (208)
|+++++|++ +||||| |++++|+||++.+. .+ +++. ++++|.++++++ +++.++| |+|+|++ . |+
T Consensus 170 gv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k----G~t~~~~~a~a~ 244 (322)
T cd01338 170 GVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR----GASSAASAANAA 244 (322)
T ss_pred CcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc----CCccHHHHHHHH
Confidence 999999998 558999 88999999999742 22 3443 378999999998 8888888 9999999 6 99
Q ss_pred HHHHhhhc-C------------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF-I------------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE 202 (208)
Q Consensus 148 ~~~i~ai~-~------------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~ 202 (208)
++++++++ | .|+++||| +|++||++++++ +|+++|+++|++|++.|+++-++++
T Consensus 245 ~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l~~~~~~~~ 321 (322)
T cd01338 245 IDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAELLEEREAVK 321 (322)
T ss_pred HHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999996 1 13678999 999999999999 8999999999999999999887654
No 26
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=1e-43 Score=320.71 Aligned_cols=195 Identities=22% Similarity=0.233 Sum_probs=171.1
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAE-VAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~-~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l 78 (208)
|+|+||+..|++|+++++++|++ ++|++++||+|||+|+|+ +++++.+|++|+||||+| .|||+||+++||+++
T Consensus 192 ~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t----~v~~k~sg~~~~rViGtgT~LDsaR~r~~LA~~l 267 (444)
T PLN00112 192 MERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNA----LICLKNAPNIPAKNFHALTRLDENRAKCQLALKA 267 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHH----HHHHHHcCCCCcceEEeeccHHHHHHHHHHHHHh
Confidence 79999999999999999999999 599999999999999986 478899999999999997 599999999999999
Q ss_pred CCCCCccc-cceeccCCCCceeecccCCCCC----CC-CCHHH--HHHHHHHHHHH-HHHhhcccccCCccch-HH-HHH
Q psy9933 79 GLNPTDVN-VPVIGGHAGITIIPLISQATPS----VS-FPDDQ--LKALTGRIQEA-VSLKNGIEKNLGLGKL-SD-FEK 147 (208)
Q Consensus 79 ~v~~~~v~-~~ViGeH~g~~~vp~~S~~~~~----~~-~~~~~--~~~l~~~v~~~-~~~~~~k~~~~g~~~~-~~-~a~ 147 (208)
||++++|+ ++||||| |++|||+||++++. .+ +++.+ +++|.++++++ +++..+| |+++| ++ .++
T Consensus 268 ~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k----G~t~~~s~a~ai 342 (444)
T PLN00112 268 GVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW----GRSSAASTAVSI 342 (444)
T ss_pred CcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHH
Confidence 99999995 6999999 89999999999742 22 22223 78899999998 7777788 87777 78 999
Q ss_pred HHHHhhhc----------------C--C--CCcEEEe----ecCCeeEEec-cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 148 ERQQFSPF----------------I--K--TFASFFS----PQKNGIEKNL-GLGKLSDFEKELVKAAVPELKKNIAKGE 202 (208)
Q Consensus 148 ~~~i~ai~----------------~--~--~~~~~~s----ig~~Gv~~i~-~lp~L~~~E~~~l~~sa~~l~~~i~~~~ 202 (208)
++++.+++ + + ++++||| +|++|+++++ ++ +|+++|+++|++|++.|.++-+.+.
T Consensus 343 ~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa~~L~~e~~~~~ 421 (444)
T PLN00112 343 ADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSEAELLAEKRCVA 421 (444)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999774 1 1 3578999 9999999999 79 8999999999999999999888776
Q ss_pred HHH
Q psy9933 203 EFV 205 (208)
Q Consensus 203 ~~~ 205 (208)
.++
T Consensus 422 ~~~ 424 (444)
T PLN00112 422 HLT 424 (444)
T ss_pred HHH
Confidence 654
No 27
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=1.4e-43 Score=310.39 Aligned_cols=193 Identities=23% Similarity=0.248 Sum_probs=166.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHh
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAK 78 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l 78 (208)
|||+|++..|++|+++++++|++++ |++++|++|||+|+||| ++++.+|++|++|||+| .|||+|||++||+++
T Consensus 91 ~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~----v~~~~sg~~~~~vig~gt~LDs~R~r~~la~~l 166 (324)
T TIGR01758 91 MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNAL----VLSNYAPSIPPKNFSALTRLDHNRALAQVAERA 166 (324)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHH----HHHHHcCCCCcceEEEeeehHHHHHHHHHHHHh
Confidence 5899999999999999999999996 99999999999999864 78888888888899997 599999999999999
Q ss_pred CCCCCccc-cceeccCCCCceeecccCCCCC-C----C----CCHHH--HHHHHHHHHHH-HHHhhcccccCCccchHH-
Q psy9933 79 GLNPTDVN-VPVIGGHAGITIIPLISQATPS-V----S----FPDDQ--LKALTGRIQEA-VSLKNGIEKNLGLGKLSD- 144 (208)
Q Consensus 79 ~v~~~~v~-~~ViGeH~g~~~vp~~S~~~~~-~----~----~~~~~--~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~- 144 (208)
+++|++|+ ++||||| |++++|+||++++. . . +++++ +++|.++++++ +++..+|. |++.||+
T Consensus 167 ~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~---~~t~~~ia 242 (324)
T TIGR01758 167 GVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRARK---LSSALSAA 242 (324)
T ss_pred CCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhccC---CCHHHHHH
Confidence 99999996 6999999 89999999999765 2 1 22222 67899999998 77665440 5899999
Q ss_pred HHHHHHHhhhc---C-------------C----CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 145 FEKERQQFSPF---I-------------K----TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 145 ~a~~~~i~ai~---~-------------~----~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
.++++++++|+ + + |.++||| +|++|++.+.++ +|+++|+++|++|++.|++.++.
T Consensus 243 ~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~lk~~~~~ 321 (324)
T TIGR01758 243 KAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKELEEERDE 321 (324)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 1 1 2468999 998888888889 79999999999999999999987
Q ss_pred HH
Q psy9933 201 GE 202 (208)
Q Consensus 201 ~~ 202 (208)
++
T Consensus 322 ~~ 323 (324)
T TIGR01758 322 AL 323 (324)
T ss_pred hh
Confidence 64
No 28
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-43 Score=307.63 Aligned_cols=189 Identities=25% Similarity=0.432 Sum_probs=170.6
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhCC
Q psy9933 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKGL 80 (208)
Q Consensus 2 sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~v 80 (208)
+|+|++..|++|+++++++++++||++++|++|||+|+|+ +++++.+++|++||+|++ .||++||++++|+++++
T Consensus 96 ~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t----~~~~~~sg~p~~rviGlgt~lds~R~~~~la~~l~v 171 (321)
T PTZ00082 96 NRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGV 171 (321)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH----HHHHHhcCCChhhEEEecCcccHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999985 467899999999999997 59999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCC----C-----C-CCHHHHHHHHHHHHHH-HHHhh--cccccCCccchHH-HH
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPS----V-----S-FPDDQLKALTGRIQEA-VSLKN--GIEKNLGLGKLSD-FE 146 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~-----~-~~~~~~~~l~~~v~~~-~~~~~--~k~~~~g~~~~~~-~a 146 (208)
++++|+++|+||| |+++||+||++++. . . ++++++++|.++++++ +++.. || |+|+||+ .+
T Consensus 172 ~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~gk----g~t~~~ia~a 246 (321)
T PTZ00082 172 NPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLLGT----GSAYFAPAAA 246 (321)
T ss_pred CcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhcCC----CccHHHHHHH
Confidence 9999999999999 99999999999732 1 1 5666789999999998 66554 67 9999999 99
Q ss_pred HHHHHhhhc-CC---------------CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy9933 147 KERQQFSPF-IK---------------TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200 (208)
Q Consensus 147 ~~~~i~ai~-~~---------------~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~ 200 (208)
+++++++|+ |. -.++|+| ||++||++++++ +||++|+++|++|++.|++.++.
T Consensus 247 ~~~i~~ail~d~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 247 AIEMAEAYLKDKKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHcCCCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999996 21 1468999 999999999998 89999999999999999987654
No 29
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=3e-43 Score=306.65 Aligned_cols=189 Identities=26% Similarity=0.348 Sum_probs=169.9
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|+++++++++.|.+++|++++||++||+|++| +++++.+|||++||||+| .|||+||+++||++++
T Consensus 88 ~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t----~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~~l~ 163 (309)
T cd05294 88 MSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT----YKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFN 163 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH----HHHHHhcCCCHHHEeeccchHHHHHHHHHHHHHHC
Confidence 68999999999999999999999999999999999999986 477888999999999997 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC---CCHHHHHHHHHHHHHH-HHHhhcccccCCccchHH-HHHHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS---FPDDQLKALTGRIQEA-VSLKNGIEKNLGLGKLSD-FEKERQ 150 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~---~~~~~~~~l~~~v~~~-~~~~~~k~~~~g~~~~~~-~a~~~~ 150 (208)
++|++|+++|+||| |++|+|+||+++.. .+ +.+.+++++.++++++ +++..+| |++.||+ .+++++
T Consensus 164 v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k----g~t~~~~a~~~~~i 238 (309)
T cd05294 164 VHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK----GGSEYGPASAISNL 238 (309)
T ss_pred cChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc----CCchhhHHHHHHHH
Confidence 99999999999999 99999999999742 12 2355688999999998 7777788 8999999 999999
Q ss_pred Hhhhc-C-------------C---CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 151 QFSPF-I-------------K---TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 151 i~ai~-~-------------~---~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
+++|+ | . -.++|+| ||++||++++++ +|+++|+++|++|++.|++.++
T Consensus 239 i~ail~~~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~ 307 (309)
T cd05294 239 VRTIANDERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTR 307 (309)
T ss_pred HHHHHCCCCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 99996 1 0 0257898 999999999999 8999999999999999998765
No 30
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.2e-43 Score=309.31 Aligned_cols=190 Identities=22% Similarity=0.244 Sum_probs=165.8
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHc-CCCCCCCeEEee-hhhHHHHHHHHHHH
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKA-GVFDPRRLFGVT-TLDIVRANTFVAEA 77 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~-~~~~~~~ViG~~-~LDs~R~~~~la~~ 77 (208)
|+|++++..|++|++++++.|++++ |++++||+|||+|+|+| ++++. +++|+++ ||+| .|||+||++++|++
T Consensus 94 ~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~----~~~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~ 168 (325)
T cd01336 94 MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNAL----ILLKYAPSIPKEN-FTALTRLDHNRAKSQIALK 168 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHH----HHHHHcCCCCHHH-EEeeehHHHHHHHHHHHHH
Confidence 6899999999999999999999997 79999999999999865 56777 5788887 9996 69999999999999
Q ss_pred hCCCCCcccc-ceeccCCCCceeecccCCCCC----C----CC-CHH--HHHHHHHHHHHH-HHHhhc-ccccCCccchH
Q psy9933 78 KGLNPTDVNV-PVIGGHAGITIIPLISQATPS----V----SF-PDD--QLKALTGRIQEA-VSLKNG-IEKNLGLGKLS 143 (208)
Q Consensus 78 l~v~~~~v~~-~ViGeH~g~~~vp~~S~~~~~----~----~~-~~~--~~~~l~~~v~~~-~~~~~~-k~~~~g~~~~~ 143 (208)
++++|++|++ +||||| |++|+|+||++++. . ++ +++ ++++|.++++++ +++.++ | |+|.||
T Consensus 169 l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~~----g~t~~~ 243 (325)
T cd01336 169 LGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKARK----LSSAMS 243 (325)
T ss_pred hCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHccc----cchHHH
Confidence 9999999975 589999 88999999999754 1 22 222 268999999998 666653 5 799999
Q ss_pred H-HHHHHHHhhhc-C------------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 144 D-FEKERQQFSPF-I------------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 144 ~-~a~~~~i~ai~-~------------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
+ .++++++++++ | .+.++||| ||++||++++++ +||++|+++|++|++.|+++++
T Consensus 244 ~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~l~~e~~ 322 (325)
T cd01336 244 AAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATAKELVEEKE 322 (325)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999986 2 13578999 999999999999 8999999999999999999998
Q ss_pred HH
Q psy9933 200 KG 201 (208)
Q Consensus 200 ~~ 201 (208)
.+
T Consensus 323 ~~ 324 (325)
T cd01336 323 TA 324 (325)
T ss_pred hh
Confidence 76
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.5e-41 Score=294.62 Aligned_cols=189 Identities=30% Similarity=0.456 Sum_probs=168.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|+++++++++++.+++|++++|++|||+|+|++ ++++.+|+||+||+|+| .|||+||++++|++++
T Consensus 82 ~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~----~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~ 157 (300)
T cd01339 82 MSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTY----VAYKASGFPRNRVIGMAGVLDSARFRYFIAEELG 157 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999999864 67788999999999998 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC-CCHHHHHHHHHHHHHH-HHHhh--cccccCCccchHH-HHHHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS-FPDDQLKALTGRIQEA-VSLKN--GIEKNLGLGKLSD-FEKERQ 150 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~-~~~~~~~~l~~~v~~~-~~~~~--~k~~~~g~~~~~~-~a~~~~ 150 (208)
++|++|+++|+||| |++++|+||++++. .+ +++++++++.++++++ +++.+ || |+|+|++ .++++|
T Consensus 158 v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k~~----g~t~~~~a~~~~~i 232 (300)
T cd01339 158 VSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLLKT----GSAYYAPAAAIAEM 232 (300)
T ss_pred CCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhcCC----CchhHHHHHHHHHH
Confidence 99999999999999 99999999999843 12 3455689999999987 55444 66 8999999 999999
Q ss_pred Hhhhc-C-------------C--CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 151 QFSPF-I-------------K--TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 151 i~ai~-~-------------~--~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
+++|+ | . ..++||| +|++|+++++++ +||++|+++|++|++.|++.++
T Consensus 233 ~~ail~~~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~~ 300 (300)
T cd01339 233 VEAILKDKKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELID 300 (300)
T ss_pred HHHHHcCCCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHhC
Confidence 99986 1 0 1378999 999999999999 8999999999999999998753
No 32
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-41 Score=290.06 Aligned_cols=191 Identities=28% Similarity=0.436 Sum_probs=170.0
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~ 79 (208)
|+|+|++..|+++++++++++.+++|++++|++|||+|+|++ ++++.+||||+||+|+| .|||+||+++||++++
T Consensus 86 ~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~----~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l~ 161 (307)
T PRK06223 86 MSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTY----VALKESGFPKNRVIGMAGVLDSARFRTFIAEELN 161 (307)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999999865 67788999999999997 5999999999999999
Q ss_pred CCCCccccceeccCCCCceeecccCCCCC----CC-CCHHHHHHHHHHHHHH-HHHhh--cccccCCccchHH-HHHHHH
Q psy9933 80 LNPTDVNVPVIGGHAGITIIPLISQATPS----VS-FPDDQLKALTGRIQEA-VSLKN--GIEKNLGLGKLSD-FEKERQ 150 (208)
Q Consensus 80 v~~~~v~~~ViGeH~g~~~vp~~S~~~~~----~~-~~~~~~~~l~~~v~~~-~~~~~--~k~~~~g~~~~~~-~a~~~~ 150 (208)
++|++|+++|+||| |++++|+||+++.. .+ ++++.+++|.++++.. .++.. +| |++.|++ .+++++
T Consensus 162 v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~~k----g~t~~~~A~~~~~i 236 (307)
T PRK06223 162 VSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLLKT----GSAYYAPAASIAEM 236 (307)
T ss_pred cChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhccc----CChhHHHHHHHHHH
Confidence 99999999999999 89999999999632 12 5666688999999987 55544 47 8999999 999999
Q ss_pred Hhhhc-C-------------C--CCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 151 QFSPF-I-------------K--TFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 151 i~ai~-~-------------~--~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
+++++ + . -+++||| +|++||++++++ +||++|+++|++|++.|++.++..
T Consensus 237 i~ail~~~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~ 306 (307)
T PRK06223 237 VEAILKDKKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEAL 306 (307)
T ss_pred HHHHHcCCCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99996 1 1 1568999 999999999998 899999999999999999988753
No 33
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.8e-40 Score=297.59 Aligned_cols=189 Identities=16% Similarity=0.103 Sum_probs=164.5
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCC--CeEEEEeCCCccccHHHHHHHHHHcC-CCCCCCeEEeehhhHHHHHHHHHHH
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAP--KALIGIISNPVNSTVPIAAEVLKKAG-VFDPRRLFGVTTLDIVRANTFVAEA 77 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p--~~iiivvtNPvD~~~~~~~~~~~~~~-~~~~~~ViG~~~LDs~R~~~~la~~ 77 (208)
|+|+||+..|++|+++++++|.+++| ++++||+|||+|+||+ ++++.+ |||++||+|+|+|||+||+++||++
T Consensus 215 ~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~----i~~k~apgiP~~rVig~gtlds~R~r~~LA~k 290 (452)
T cd05295 215 EDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTS----ILIKYAPSIPRKNIIAVARLQENRAKALLARK 290 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHH----HHHHHcCCCCHHHEEEecchHHHHHHHHHHHH
Confidence 79999999999999999999999999 9999999999999865 566666 9999999999999999999999999
Q ss_pred hCCCCCcc-ccceeccCCCCceeecccCCCCCC----------------C-CCHHH--HHHHHHHHHHHHHHhhcccccC
Q psy9933 78 KGLNPTDV-NVPVIGGHAGITIIPLISQATPSV----------------S-FPDDQ--LKALTGRIQEAVSLKNGIEKNL 137 (208)
Q Consensus 78 l~v~~~~v-~~~ViGeH~g~~~vp~~S~~~~~~----------------~-~~~~~--~~~l~~~v~~~~~~~~~k~~~~ 137 (208)
+||++++| +++||||| |++|+|.||+++... + +++++ .+++.+.++++.. .+|
T Consensus 291 l~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg~--~rk---- 363 (452)
T cd05295 291 LNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLSS--SLN---- 363 (452)
T ss_pred hCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHHH--hcc----
Confidence 99999999 57999999 999999999996421 1 12222 4567777777622 467
Q ss_pred CccchHH-HHHHHHHhhhc-C------------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHH
Q psy9933 138 GLGKLSD-FEKERQQFSPF-I------------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPE 193 (208)
Q Consensus 138 g~~~~~~-~a~~~~i~ai~-~------------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~ 193 (208)
|+|.+|+ .|+++++++++ | .|+++||| +|++|++.+.+| +|+++|+++|++|++.
T Consensus 364 gsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-~L~e~E~~kL~~S~~e 442 (452)
T cd05295 364 HEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-ELSEILREVLKRITSD 442 (452)
T ss_pred CChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 8999999 99999999985 1 24789999 999999999999 7999999999999999
Q ss_pred HHHHHHHH
Q psy9933 194 LKKNIAKG 201 (208)
Q Consensus 194 l~~~i~~~ 201 (208)
|.++-+.+
T Consensus 443 L~~E~~~~ 450 (452)
T cd05295 443 LIQEKLVA 450 (452)
T ss_pred HHHHHHhh
Confidence 99877654
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.4e-35 Score=252.73 Aligned_cols=156 Identities=29% Similarity=0.404 Sum_probs=138.5
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGL 80 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v 80 (208)
|+|++++..|++|++++++++.++||+++++++|||+|+|++ ++++.+|||++||+|+|+||++|+++++|+++++
T Consensus 86 ~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~----~~~~~sg~~~~kviG~~~ld~~r~~~~la~~l~v 161 (263)
T cd00650 86 MGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITY----LVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGV 161 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHHhCCCchhEEEeecchHHHHHHHHHHHhCC
Confidence 689999999999999999999999999999999999999864 6788889999999999879999999999999999
Q ss_pred CCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccCCccchHHHHHHHHHhhhc-----
Q psy9933 81 NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPF----- 155 (208)
Q Consensus 81 ~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~~~~~~~k~~~~g~~~~~~~a~~~~i~ai~----- 155 (208)
++++|+++|||+| |++++|+||++++ + .++++++++|+
T Consensus 162 ~~~~v~~~v~G~h-g~~~~~~~s~~~~------------------------------a------~~~~~ii~ai~~~~~~ 204 (263)
T cd00650 162 DPDDVKVYILGEH-GGSQVPDWSTVRI------------------------------A------TSIADLIRSLLNDEGE 204 (263)
T ss_pred CccceEEEEEEcC-CCceEeccccchH------------------------------H------HHHHHHHHHHHcCCCE
Confidence 9999999999999 8899999999750 0 33344444442
Q ss_pred ------------CCCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy9933 156 ------------IKTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 198 (208)
Q Consensus 156 ------------~~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i 198 (208)
+.++++||| +|++||++++++ +|+++|+++|++|++.++..+
T Consensus 205 ~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 205 ILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred EEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 225789999 999999999998 899999999999999999765
No 35
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.98 E-value=7.3e-32 Score=217.02 Aligned_cols=138 Identities=37% Similarity=0.451 Sum_probs=121.8
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCC-----------CCCCHHHHHHHHHHHHHH-HHHh
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPS-----------VSFPDDQLKALTGRIQEA-VSLK 130 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~-----------~~~~~~~~~~l~~~v~~~-~~~~ 130 (208)
|+|||+||+++||+++|++|++|++|||||| |+++||+||+++.. ..++++++++|.++++++ .++.
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 5699999999999999999999999999999 89999999999832 247788899999999998 5554
Q ss_pred hcccccCCccchHH-HHHHHHHhhhc-C----------------CCCc-EEEe----ecCCeeEEecc-CCCCCHHHHHH
Q psy9933 131 NGIEKNLGLGKLSD-FEKERQQFSPF-I----------------KTFA-SFFS----PQKNGIEKNLG-LGKLSDFEKEL 186 (208)
Q Consensus 131 ~~k~~~~g~~~~~~-~a~~~~i~ai~-~----------------~~~~-~~~s----ig~~Gv~~i~~-lp~L~~~E~~~ 186 (208)
++|. |+++||+ .|+++++++|+ | .+++ +||| ||++||+++++ + +||++|+++
T Consensus 80 ~~k~---g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~ 155 (174)
T PF02866_consen 80 KAKG---GSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDL-PLSEEEQEK 155 (174)
T ss_dssp HHHS---SSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSB-SSTHHHHHH
T ss_pred eecc---ccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeCCC-CCCHHHHHH
Confidence 4442 7899999 99999999996 1 1244 9999 99999999999 7 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9933 187 VKAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 187 l~~sa~~l~~~i~~~~~~~ 205 (208)
|++|++.|++.++++++|+
T Consensus 156 l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 156 LKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999985
No 36
>KOG1496|consensus
Probab=99.90 E-value=3e-23 Score=172.29 Aligned_cols=196 Identities=26% Similarity=0.278 Sum_probs=156.7
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhC
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKG 79 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~ 79 (208)
|.|.||+..|.+|+++-+.++.+|+ |+.+++||.||++..+.++. +.+..+|++++-.+|.||..|+..++|.++|
T Consensus 96 MERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRLDhNRA~~QlA~klg 172 (332)
T KOG1496|consen 96 MERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRLDHNRALAQLALKLG 172 (332)
T ss_pred chhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhhchhhHHHHHHHhhC
Confidence 7899999999999999999999998 99999999999999987654 4567899999999999999999999999999
Q ss_pred CCCCccc-cceeccCCCCceeecccCCCCCC--------C-CCHHHH--HHHHHHHHHH--HHHhhcccccCCccchHH-
Q psy9933 80 LNPTDVN-VPVIGGHAGITIIPLISQATPSV--------S-FPDDQL--KALTGRIQEA--VSLKNGIEKNLGLGKLSD- 144 (208)
Q Consensus 80 v~~~~v~-~~ViGeH~g~~~vp~~S~~~~~~--------~-~~~~~~--~~l~~~v~~~--~~~~~~k~~~~g~~~~~~- 144 (208)
|+.++|. ..+||.| ..+++|...+++... + +.++.| .++.+.|+++ .-++..| -|+.+|.
T Consensus 173 v~~~~VkNviIWGNH-SsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ark----~SSA~SaA 247 (332)
T KOG1496|consen 173 VPVSDVKNVIIWGNH-SSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKARK----LSSAMSAA 247 (332)
T ss_pred CchhhcceeEEeccc-ccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhhh----hhhhhhHH
Confidence 9999995 9999999 789999999998531 1 333332 4688888876 2222233 3433443
Q ss_pred HHHHHHHhh-hc------------------CCCCcEEEe---ecCCeeEEec-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 145 FEKERQQFS-PF------------------IKTFASFFS---PQKNGIEKNL-GLGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 145 ~a~~~~i~a-i~------------------~~~~~~~~s---ig~~Gv~~i~-~lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
.|+++-++. .+ +.|++..|| ..++|-++++ +| +++++-+++++.+++.|.++-+.+
T Consensus 248 ~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wkiVqgl-~iddf~r~km~~t~~EL~eEkd~a 326 (332)
T KOG1496|consen 248 KAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWKIVQGL-PIDDFSREKMDLTAKELKEEKDLA 326 (332)
T ss_pred HhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceEEEcCc-chhHHHHHhhhhhHHHHHHhHHHH
Confidence 333333322 22 236777788 7788988887 58 799999999999999999999988
Q ss_pred HHHH
Q psy9933 202 EEFV 205 (208)
Q Consensus 202 ~~~~ 205 (208)
..++
T Consensus 327 ~~~l 330 (332)
T KOG1496|consen 327 YSCL 330 (332)
T ss_pred HHhh
Confidence 8765
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.66 E-value=9.5e-17 Score=145.53 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=79.2
Q ss_pred HHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCCCCCccc
Q psy9933 7 FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVN 86 (208)
Q Consensus 7 ~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v~~~~v~ 86 (208)
.-.|+++++++++.|.++||+|++|++|||+|+||+ ++++.+ |+.||||+++. ++|+++++|+.+|+++++|+
T Consensus 116 alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~----a~~~~~--p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~ 188 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTE----AVRRYV--PPEKAVGLCNV-PIGVMEIVAKLLGESEEKVD 188 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHH----HHHHhC--CCCcEEEECCC-HHHHHHHHHHHhCCCHHHeE
Confidence 347999999999999999999999999999999864 566664 88999999866 99999999999999999999
Q ss_pred cceec-cCCCCceeecccCCC
Q psy9933 87 VPVIG-GHAGITIIPLISQAT 106 (208)
Q Consensus 87 ~~ViG-eH~g~~~vp~~S~~~ 106 (208)
++|+| +| + |+||.++
T Consensus 189 ~~v~GlnH-g----~~~s~~~ 204 (425)
T cd05197 189 WQYAGLNH-G----IWLNRVR 204 (425)
T ss_pred EEEEeccC-e----EeeEeEE
Confidence 99999 99 5 7888774
No 38
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.65 E-value=1.6e-16 Score=123.94 Aligned_cols=57 Identities=39% Similarity=0.660 Sum_probs=53.5
Q ss_pred CCHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEE
Q psy9933 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61 (208)
Q Consensus 1 ~sR~dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG 61 (208)
|+|+||++.|++|++++++++++++|+++++|+|||+|+| ++++++.+||||+||||
T Consensus 85 ~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~----t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 85 MSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVM----TYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHH----HHHHHHHHTSSGGGEEE
T ss_pred ccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHH----HHHHHHhhCcCcccCcC
Confidence 6899999999999999999999999999999999999987 56889999999999998
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.50 E-value=2.9e-14 Score=129.13 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=72.8
Q ss_pred HHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCCCCCccc
Q psy9933 7 FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVN 86 (208)
Q Consensus 7 ~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v~~~~v~ 86 (208)
...|+++++++++.++++||+|++|++|||+|++| +++++.+ +.||||++.. +.|+++++|+.+|+++++|+
T Consensus 117 a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt----~a~~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~ 188 (419)
T cd05296 117 ALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVT----EAVLRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVF 188 (419)
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHH----HHHHHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHce
Confidence 67899999999999999999999999999999975 5667766 7899999876 49999999999999999999
Q ss_pred cceec-cC
Q psy9933 87 VPVIG-GH 93 (208)
Q Consensus 87 ~~ViG-eH 93 (208)
++|+| +|
T Consensus 189 ~~v~GlNH 196 (419)
T cd05296 189 IDYAGLNH 196 (419)
T ss_pred EEEEeccc
Confidence 99999 99
No 40
>PRK15076 alpha-galactosidase; Provisional
Probab=99.46 E-value=7.8e-14 Score=126.84 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=74.5
Q ss_pred CHHHH--------HHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-h-hhHHHHH
Q psy9933 2 TRDDL--------FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-T-LDIVRAN 71 (208)
Q Consensus 2 sR~dl--------~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~-LDs~R~~ 71 (208)
+|.|. +..|+++++++++.|+++||+|++|++|||+|++|+ +++ ++|+.||||++ + +|++
T Consensus 107 ~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~----~~~---~~~~~rviG~c~~~~~~~--- 176 (431)
T PRK15076 107 TIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTW----AMN---RYPGIKTVGLCHSVQGTA--- 176 (431)
T ss_pred ecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHH----HHh---cCCCCCEEEECCCHHHHH---
Confidence 46677 899999999999999999999999999999999864 454 68899999996 5 9998
Q ss_pred HHHHHHhCCCCCccccceec-cC
Q psy9933 72 TFVAEAKGLNPTDVNVPVIG-GH 93 (208)
Q Consensus 72 ~~la~~l~v~~~~v~~~ViG-eH 93 (208)
+.+|+.+|+++++|++++.| .|
T Consensus 177 ~~ia~~l~v~~~~v~~~~~GlNH 199 (431)
T PRK15076 177 EQLARDLGVPPEELRYRCAGINH 199 (431)
T ss_pred HHHHHHhCCCHHHeEEEEEeecc
Confidence 78999999999999999999 88
No 41
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.17 E-value=7e-11 Score=107.36 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCCCCCc
Q psy9933 5 DLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTD 84 (208)
Q Consensus 5 dl~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v~~~~ 84 (208)
.....|+.+++++++.+.++||+++++.+|||+|+|| +++++.++ .||+|++.- +.|+++.+|+.+++++++
T Consensus 116 ~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t----~~~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~ 187 (423)
T cd05297 116 FRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELT----WALNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEE 187 (423)
T ss_pred HHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHH----HHHHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHH
Confidence 4567899999999999999999999999999999985 46777775 799999744 888999999999999999
Q ss_pred cccceec-cC
Q psy9933 85 VNVPVIG-GH 93 (208)
Q Consensus 85 v~~~ViG-eH 93 (208)
|+++++| .|
T Consensus 188 v~~~~~GlNH 197 (423)
T cd05297 188 VDYQVAGINH 197 (423)
T ss_pred eEEEEEeecc
Confidence 9999999 88
No 42
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=98.93 E-value=2.2e-09 Score=97.91 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=67.4
Q ss_pred HHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-h-hhHHHHHHHHHHHhCCCCCc
Q psy9933 7 FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-T-LDIVRANTFVAEAKGLNPTD 84 (208)
Q Consensus 7 ~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~-LDs~R~~~~la~~l~v~~~~ 84 (208)
.-+|+++++++++.|.++||+|.+|++|||+|++|+ ++++. +|+.||+|+. . .- ++..+|+.+|+++++
T Consensus 116 alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~----~~~~~--~~~~kviGlC~~~~~---~~~~la~~lg~~~~~ 186 (437)
T cd05298 116 GLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAE----ALRRL--FPNARILNICDMPIA---IMDSMAAILGLDRKD 186 (437)
T ss_pred HHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHH----HHHHH--CCCCCEEEECCcHHH---HHHHHHHHhCCCHHH
Confidence 457999999999999999999999999999999854 56655 8899999995 3 33 456799999999999
Q ss_pred cccceec-cC
Q psy9933 85 VNVPVIG-GH 93 (208)
Q Consensus 85 v~~~ViG-eH 93 (208)
++.-+.| .|
T Consensus 187 v~~~~~GlNH 196 (437)
T cd05298 187 LEPDYFGLNH 196 (437)
T ss_pred ceEEEEeecc
Confidence 9988888 77
No 43
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.94 E-value=0.0048 Score=50.21 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhC
Q psy9933 7 FNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKG 79 (208)
Q Consensus 7 ~~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~ 79 (208)
.-++.+.+.++++.+.++||+|.++..|||.-+++ +.+.+.. |.-|++|+-.-- .=+...+|+.||
T Consensus 117 alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt----~a~~r~~--~~~k~vGlCh~~-~~~~~~la~~L~ 182 (183)
T PF02056_consen 117 ALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVT----EALSRYT--PKIKVVGLCHGP-QGTRRQLAKLLG 182 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHH----HHHHHHS--TTSEEEEE-SHH-HHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHH----HHHHHhC--CCCCEEEECCCH-HHHHHHHHHHhC
Confidence 34688999999999999999999999999998864 4555543 457899995311 223345666665
No 44
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0068 Score=55.39 Aligned_cols=77 Identities=25% Similarity=0.406 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhCCCC-Cccc
Q psy9933 9 TNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKGLNP-TDVN 86 (208)
Q Consensus 9 ~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~v~~-~~v~ 86 (208)
++.+++-+|++.+.++||+|.++.-|||.-+. |+...+. +|.-|++|+. ..= =....+|+.|++++ ++++
T Consensus 121 RtIpvildi~~~m~~~~P~Aw~lNytNP~~~v----TeAv~r~--~~~~K~VGlCh~~~--g~~~~lAe~L~~~~~~~l~ 192 (442)
T COG1486 121 RTIPVILDIAKDMEKVCPNAWMLNYTNPAAIV----TEAVRRL--YPKIKIVGLCHGPI--GIAMELAEVLGLEPREDLR 192 (442)
T ss_pred ccchHHHHHHHHHHHhCCCceEEeccChHHHH----HHHHHHh--CCCCcEEeeCCchH--HHHHHHHHHhCCCchhcee
Confidence 57789999999999999999999999999775 5566665 3434999995 311 23457999999975 9999
Q ss_pred cceec-cC
Q psy9933 87 VPVIG-GH 93 (208)
Q Consensus 87 ~~ViG-eH 93 (208)
.-+.| .|
T Consensus 193 ~~~aGlNH 200 (442)
T COG1486 193 YRVAGLNH 200 (442)
T ss_pred EEEeechh
Confidence 88888 77
No 45
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=58.99 E-value=45 Score=30.74 Aligned_cols=54 Identities=20% Similarity=0.059 Sum_probs=37.5
Q ss_pred HHHHHHHhhhc-C-----------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9933 145 FEKERQQFSPF-I-----------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199 (208)
Q Consensus 145 ~a~~~~i~ai~-~-----------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~ 199 (208)
.++.+++++|+ | .+.+++++ ||++||+.+- +.+|.+.-..+++.-...-+-.++
T Consensus 317 ~~a~~ii~aI~~d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~-vg~lP~~~~~l~~~~~~~e~l~ve 392 (437)
T cd05298 317 EYIVDLAASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLV-VGKIPTFYKGLMEQQVAYEKLLVE 392 (437)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecc-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 66889999995 1 15678888 9999999985 457888877765544433333333
No 46
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=55.96 E-value=13 Score=25.89 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKK 196 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~ 196 (208)
+|||.||+.|++--.++..
T Consensus 2 ~LSe~E~r~L~eiEr~L~~ 20 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRA 20 (82)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 5999999999998888764
No 47
>PRK09458 pspB phage shock protein B; Provisional
Probab=52.91 E-value=36 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVK---AAVPELKKNIAKGEEFV 205 (208)
Q Consensus 178 ~L~~~E~~~l~---~sa~~l~~~i~~~~~~~ 205 (208)
.||++|+++|+ +.|+.+++.|+..+..+
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999988776 67888888888888766
No 48
>PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function.
Probab=52.11 E-value=92 Score=27.61 Aligned_cols=70 Identities=30% Similarity=0.427 Sum_probs=42.6
Q ss_pred HHHHHHHHHHH-HHhCCCeEEEEeCCCccccHHHHHHHHHHcC---CCCCCCeEEeehhhHHHHHHHHHHHhCCCCCccc
Q psy9933 11 ASIVRDIIKAV-AEVAPKALIGIISNPVNSTVPIAAEVLKKAG---VFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVN 86 (208)
Q Consensus 11 a~Iv~~i~~~i-~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~---~~~~~~ViG~~~LDs~R~~~~la~~l~v~~~~v~ 86 (208)
.++-+.|++.| .+|||+.++=-.+||. .||.++ |++.+ =-|+||. .-..|.+.+ ++++.-
T Consensus 21 ~kL~~~I~~~iv~eyG~~e~l~RlsdP~---------WFQaf~~viGmDW~-SSGsTTv----~~gaLKe~l--~~~dlG 84 (319)
T PF05559_consen 21 KKLGRAIVEAIVEEYGPDELLRRLSDPF---------WFQAFNNVIGMDWH-SSGSTTV----VLGALKEAL--NPKDLG 84 (319)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHhcCcH---------HHHHHhHHhcCCcc-CCcHHHH----HHHHHHHhc--CcccCC
Confidence 34444444443 4679999999999997 455443 34433 2233332 233444444 488999
Q ss_pred cceeccCCCCc
Q psy9933 87 VPVIGGHAGIT 97 (208)
Q Consensus 87 ~~ViGeH~g~~ 97 (208)
.+|.||- |..
T Consensus 85 i~V~GGK-G~~ 94 (319)
T PF05559_consen 85 IYVAGGK-GKH 94 (319)
T ss_pred EEEecCC-chh
Confidence 9999999 643
No 49
>PLN02417 dihydrodipicolinate synthase
Probab=49.05 E-value=45 Score=28.58 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=37.7
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|...++.++...++ ..|++.+++++.|+.. .++.+|++++.+.+.+.
T Consensus 17 g~iD~~~~~~~i~~l~~---~Gv~Gi~~~GstGE~~-----------~ls~~Er~~~~~~~~~~ 66 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIE---NGAEGLIVGGTTGEGQ-----------LMSWDEHIMLIGHTVNC 66 (280)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccCcchh-----------hCCHHHHHHHHHHHHHH
Confidence 46899999988877764 5688888888867642 37788888888776654
No 50
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=45.93 E-value=1.4e+02 Score=23.45 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC----ccccHHHHHHHHHHcCCCCCCCeEEe---e-hhhHHHHHHHHHHHhCCCCC
Q psy9933 12 SIVRDIIKAVAEVAPKALIGIISNP----VNSTVPIAAEVLKKAGVFDPRRLFGV---T-TLDIVRANTFVAEAKGLNPT 83 (208)
Q Consensus 12 ~Iv~~i~~~i~~~~p~~iiivvtNP----vD~~~~~~~~~~~~~~~~~~~~ViG~---~-~LDs~R~~~~la~~l~v~~~ 83 (208)
+.+.++.+.+.++++=.++-+-.-+ .+.-.-...+...-...+++..||.+ | .+||.-|-.+|.+..+-. .
T Consensus 17 ~~i~~Y~kRl~~~~~~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~ 95 (153)
T TIGR00246 17 TGFEEYTRRFPKDAPFELIEIPAGKRGKNADIKRILDKEGDRILAAIGKAHVVTLDIPGKPWTTPQLADTLEKWKTDG-R 95 (153)
T ss_pred HHHHHHHHhcCCcCCeEEEEeCCccccccccHHHHHHHHHHHHHHhCCCCeEEEEcCCCCcCCHHHHHHHHHHHhccC-C
Confidence 6789999999999875555553222 11000001121122223456789988 5 599999999998875444 3
Q ss_pred ccccceeccC
Q psy9933 84 DVNVPVIGGH 93 (208)
Q Consensus 84 ~v~~~ViGeH 93 (208)
+ -+++|||.
T Consensus 96 ~-i~FvIGGa 104 (153)
T TIGR00246 96 D-VTLLIGGP 104 (153)
T ss_pred e-EEEEEcCC
Confidence 4 47999976
No 51
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.48 E-value=58 Score=28.29 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=49.1
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH----HHHhhcccccCC
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA----VSLKNGIEKNLG 138 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~----~~~~~~k~~~~g 138 (208)
|.+|-..++.++.....- -|++.++.++.|+.. .++.+|+.++.+.+++. +.+..|. |
T Consensus 20 g~vD~~a~~~lv~~li~~---Gv~gi~~~GttGE~~-----------~Ls~eEr~~v~~~~v~~~~grvpviaG~----g 81 (299)
T COG0329 20 GSVDEEALRRLVEFLIAA---GVDGLVVLGTTGESP-----------TLTLEERKEVLEAVVEAVGGRVPVIAGV----G 81 (299)
T ss_pred CCcCHHHHHHHHHHHHHc---CCCEEEECCCCccch-----------hcCHHHHHHHHHHHHHHHCCCCcEEEec----C
Confidence 447888888877766532 377666666657653 37889999998888876 3344555 6
Q ss_pred ccchHH-HHHHHHHhhh
Q psy9933 139 LGKLSD-FEKERQQFSP 154 (208)
Q Consensus 139 ~~~~~~-~a~~~~i~ai 154 (208)
+....- ...++..+.+
T Consensus 82 ~~~t~eai~lak~a~~~ 98 (299)
T COG0329 82 SNSTAEAIELAKHAEKL 98 (299)
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 655555 5566666555
No 52
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.90 E-value=53 Score=28.60 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=38.4
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
|.+|-..++.++..... ..|++.+++++.|+.. .++.+|++++.+.+.+.
T Consensus 24 g~iD~~~l~~lv~~li~---~Gv~Gi~v~GstGE~~-----------~Lt~eEr~~v~~~~~~~ 73 (309)
T cd00952 24 DTVDLDETARLVERLIA---AGVDGILTMGTFGECA-----------TLTWEEKQAFVATVVET 73 (309)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECcccccch-----------hCCHHHHHHHHHHHHHH
Confidence 46899999988887754 6788888877767643 37889999988877764
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=44.66 E-value=62 Score=27.94 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=37.2
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
|.+|...++.++...+. .-|++.+++++.|+.. .++.+|+.++.+.+.+.
T Consensus 16 g~iD~~~l~~lv~~~~~---~Gv~gi~v~GstGE~~-----------~Ls~~Er~~l~~~~~~~ 65 (294)
T TIGR02313 16 GDIDEEALRELIEFQIE---GGSHAISVGGTSGEPG-----------SLTLEERKQAIENAIDQ 65 (294)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccCcccc-----------cCCHHHHHHHHHHHHHH
Confidence 56888899888877763 5678888887766542 37788888888877654
No 54
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=43.19 E-value=88 Score=22.41 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=6.1
Q ss_pred HHHHHHhCCCeEEE
Q psy9933 18 IKAVAEVAPKALIG 31 (208)
Q Consensus 18 ~~~i~~~~p~~iii 31 (208)
+..+.+.+.+..++
T Consensus 21 a~~l~~~G~~v~~~ 34 (121)
T PF02310_consen 21 AAYLRKAGHEVDIL 34 (121)
T ss_dssp HHHHHHTTBEEEEE
T ss_pred HHHHHHCCCeEEEE
Confidence 33344445544443
No 55
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.08 E-value=74 Score=26.87 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=37.4
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++.++...+. .-|++.+++++.|+.. .++.+|+.++.+.+++.
T Consensus 13 g~iD~~~~~~~i~~l~~---~Gv~gi~~~GstGE~~-----------~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 13 GEVDLDALRRLVEFLIE---AGVDGLVVLGTTGEAP-----------TLTDEERKEVIEAVVEA 62 (281)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECCCCcccc-----------cCCHHHHHHHHHHHHHH
Confidence 47899999988887764 3677777777766542 47788888888888765
No 56
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=41.87 E-value=56 Score=28.01 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCcc--ccHHHHHHHHHHcCCCCCCCeEEeeh
Q psy9933 15 RDIIKAVAEVAPKALIGIISNPVN--STVPIAAEVLKKAGVFDPRRLFGVTT 64 (208)
Q Consensus 15 ~~i~~~i~~~~p~~iiivvtNPvD--~~~~~~~~~~~~~~~~~~~~ViG~~~ 64 (208)
+++++.+.+++++.+|.=.|||.. -.+| +-+++.+ +-+.|+++|.
T Consensus 122 ~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~G~ai~AtGs 168 (254)
T cd00762 122 PEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--EGRAIFASGS 168 (254)
T ss_pred HHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--CCCEEEEECC
Confidence 478889999999999999999996 3333 4455554 2357999885
No 57
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=40.71 E-value=80 Score=26.95 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=36.7
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
|.+|-..++..+...+. .-|++.++.++.|+.. .++.+|++++.+.+.+.
T Consensus 14 g~iD~~~~~~~i~~l~~---~Gv~Gi~~~GstGE~~-----------~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIE---NGTDAIVVVGTTGESP-----------TLSHEEHKKVIEFVVDL 63 (285)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECccCcccc-----------cCCHHHHHHHHHHHHHH
Confidence 46899999998887764 5678777766756532 37788888888777654
No 58
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=40.25 E-value=88 Score=26.78 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=36.7
Q ss_pred ehhhHHHHHHHHHHHhCCCCC-ccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPT-DVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~-~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++.++...+. . -++++++++|.|+.. .++.+|+.++.+.+.+.
T Consensus 16 g~iD~~~~~~~i~~l~~---~~Gv~gi~~~GstGE~~-----------~Lt~~Er~~~~~~~~~~ 66 (288)
T cd00954 16 GEINEDVLRAIVDYLIE---KQGVDGLYVNGSTGEGF-----------LLSVEERKQIAEIVAEA 66 (288)
T ss_pred CCCCHHHHHHHHHHHHh---cCCCCEEEECcCCcCcc-----------cCCHHHHHHHHHHHHHH
Confidence 46888888888877754 3 578888888867642 36778888888777665
No 59
>KOG0652|consensus
Probab=40.12 E-value=67 Score=28.23 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCCe--EEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee-hhhHHHHHHHHHHHhCCCCC
Q psy9933 14 VRDIIKAVAEVAPKA--LIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT-TLDIVRANTFVAEAKGLNPT 83 (208)
Q Consensus 14 v~~i~~~i~~~~p~~--iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~-~LDs~R~~~~la~~l~v~~~ 83 (208)
+-++..++--+.++. ++|-.||-+|++-|. +.+.+.+++.-=+-.- ...-+|.-+.=+++.+|++.
T Consensus 295 MLELLNQLDGFss~~~vKviAATNRvDiLDPA----LlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~D 363 (424)
T KOG0652|consen 295 MLELLNQLDGFSSDDRVKVIAATNRVDILDPA----LLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDD 363 (424)
T ss_pred HHHHHHhhcCCCCccceEEEeecccccccCHH----HhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCC
Confidence 456677777776644 888899999999873 4567777765444443 46677777888899888773
No 60
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=38.62 E-value=82 Score=26.93 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=36.8
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
|.+|...++.++-.... ..|++.+++|+.|+.. .++.+|+.++.+.+.+.
T Consensus 15 g~iD~~~~~~li~~l~~---~Gv~Gl~~~GstGE~~-----------~Lt~eEr~~l~~~~~~~ 64 (279)
T cd00953 15 NKIDKEKFKKHCENLIS---KGIDYVFVAGTTGLGP-----------SLSFQEKLELLKAYSDI 64 (279)
T ss_pred CCcCHHHHHHHHHHHHH---cCCcEEEEcccCCCcc-----------cCCHHHHHHHHHHHHHH
Confidence 46888888888777653 6788888877767642 47788888888877654
No 61
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.42 E-value=98 Score=26.56 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=37.3
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++.++...+. ...|++.+++++.|+.. .++.+|+.++.+.+.+.
T Consensus 19 g~iD~~~~~~li~~l~~--~~Gv~gi~v~GstGE~~-----------~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIE--KQGIDGLYVGGSTGEAF-----------LLSTEEKKQVLEIVAEE 69 (293)
T ss_pred CCcCHHHHHHHHHHHHh--cCCCCEEEECCCccccc-----------cCCHHHHHHHHHHHHHH
Confidence 56888888888877753 36788888888866532 47778888887777654
No 62
>PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII extrinsic protein PsbU, which forms part of the OEC in cyanobacteria and red algae. PsbU acts to stabilise the oxygen-evolving machinery of PSII against heat-induced inactivation, which is crucial for cellular thermo-tolerance [].; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 3BZ1_U 3KZI_U 3PRQ_U 2AXT_u 3BZ2_U 4FBY_U 3PRR_U 1S5L_U 3A0H_U 3ARC_U ....
Probab=37.91 E-value=17 Score=26.23 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.6
Q ss_pred eeEEeccCCCCCHHHHHHHHHH
Q psy9933 169 GIEKNLGLGKLSDFEKELVKAA 190 (208)
Q Consensus 169 Gv~~i~~lp~L~~~E~~~l~~s 190 (208)
.|+.++.+|.||+.|.+.|++=
T Consensus 47 sveDvl~ipgLse~qK~~lk~~ 68 (93)
T PF06514_consen 47 SVEDVLNIPGLSERQKALLKKY 68 (93)
T ss_dssp SGGGGCCSTT--HHHHHHHHHH
T ss_pred CHHHHHhccCCCHHHHHHHHHH
Confidence 5777888999999999998863
No 63
>PRK02628 nadE NAD synthetase; Reviewed
Probab=37.40 E-value=1.3e+02 Score=29.42 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHc---CCCCCCCeEEeehh------hHHHHHHHHHHHhCCC
Q psy9933 11 ASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKA---GVFDPRRLFGVTTL------DIVRANTFVAEAKGLN 81 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~---~~~~~~~ViG~~~L------Ds~R~~~~la~~l~v~ 81 (208)
-.++..+.+.+.+.+.++++|=+|-=.|..+. ..++.++ -|.++.+|+|+.+. .|...-..+++.+|++
T Consensus 346 ~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~--l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~ 423 (679)
T PRK02628 346 NIQVSGLAQRLRATGLKKVVIGISGGLDSTHA--LLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVT 423 (679)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHH--HHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCe
Confidence 34566777788888899999999999999842 2334444 36778999999642 4566777899999998
Q ss_pred CCccc-cceeccC
Q psy9933 82 PTDVN-VPVIGGH 93 (208)
Q Consensus 82 ~~~v~-~~ViGeH 93 (208)
-..+. ..+++.|
T Consensus 424 ~~~i~I~~~~~~~ 436 (679)
T PRK02628 424 AREIDIRPAALQM 436 (679)
T ss_pred EEEEEcHHHHHHH
Confidence 87765 3444444
No 64
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=36.72 E-value=79 Score=27.21 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=37.5
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
|.+|...++.++..... ..|++.+++++.|+.. .++.+|++++.+.+.+.
T Consensus 21 g~iD~~~l~~li~~l~~---~Gv~gi~v~GstGE~~-----------~Lt~eEr~~v~~~~~~~ 70 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLG---YGLEALFAAGGTGEFF-----------SLTPAEYEQVVEIAVST 70 (296)
T ss_pred CCcCHHHHHHHHHHHHh---cCCCEEEECCCCcCcc-----------cCCHHHHHHHHHHHHHH
Confidence 45888888888877763 6688888887767642 47888999888877664
No 65
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=36.32 E-value=2.2e+02 Score=23.72 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeeh------hhHHHHHHHHHHHhCCCCCc
Q psy9933 11 ASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTT------LDIVRANTFVAEAKGLNPTD 84 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~------LDs~R~~~~la~~l~v~~~~ 84 (208)
-.++.-+-+.+.+.+.+++++-+|-=+|..+ ++.++.+..+ +.+|++++. -+....-..+++.+|++...
T Consensus 8 ~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~--~a~la~~~~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~ 83 (248)
T cd00553 8 NALVLFLRDYLRKSGFKGVVLGLSGGIDSAL--VAALAVRALG--RENVLALFMPSRYSSEETREDAKELAEALGIEHVN 83 (248)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCCcHHHHH--HHHHHHHHhC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 3455666677777788889999999999976 3456666643 567888852 34666777888999987655
Q ss_pred cc
Q psy9933 85 VN 86 (208)
Q Consensus 85 v~ 86 (208)
+.
T Consensus 84 i~ 85 (248)
T cd00553 84 ID 85 (248)
T ss_pred ec
Confidence 54
No 66
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=36.02 E-value=78 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 177 GKLSDFEKELVKAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 177 p~L~~~E~~~l~~sa~~l~~~i~~~~~~~ 205 (208)
+.|+++|++.|+.=...+.+.|...-+.|
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL 52 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVL 52 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999998888888888776655
No 67
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=35.74 E-value=85 Score=27.00 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=43.3
Q ss_pred HHhCCCeEEEEeCCCccccHHHHHHHHHHc----CCCCCC--CeEEe---ehhhHHHHHHHHHHHhCCCCCcccccee
Q psy9933 22 AEVAPKALIGIISNPVNSTVPIAAEVLKKA----GVFDPR--RLFGV---TTLDIVRANTFVAEAKGLNPTDVNVPVI 90 (208)
Q Consensus 22 ~~~~p~~iiivvtNPvD~~~~~~~~~~~~~----~~~~~~--~ViG~---~~LDs~R~~~~la~~l~v~~~~v~~~Vi 90 (208)
.+..+...++++..||++... . -+++. ..+..+ -+||+ |+.+-..++.++.+++++++.+|...-+
T Consensus 89 l~~~~~~kva~VGtPCqI~al--r-~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~ 163 (282)
T PRK09325 89 VREYGLDKVGIVGTPCQIQAV--R-KAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDI 163 (282)
T ss_pred HHhcCCCeEEEEccChHHHHH--H-HHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEE
Confidence 334577899999999999752 2 22221 112223 25566 3678888889999888999888864433
No 68
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=35.11 E-value=79 Score=27.20 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHhCCCeEEEEeCCCccccHHHHHHHHHHc-CCCC--CCCe---EEe---ehhhHHHHHHHHHHHhCCCCCcccccee
Q psy9933 21 VAEVAPKALIGIISNPVNSTVPIAAEVLKKA-GVFD--PRRL---FGV---TTLDIVRANTFVAEAKGLNPTDVNVPVI 90 (208)
Q Consensus 21 i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~-~~~~--~~~V---iG~---~~LDs~R~~~~la~~l~v~~~~v~~~Vi 90 (208)
+.+..+...++++.-||++... . -+++. .++. .++| +|+ ++.+...++.+|.++.|++|.+|..+-+
T Consensus 86 ~~~~~~~~~va~vGtPCqi~al--r-~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~ 161 (275)
T TIGR03289 86 AVREYGLEKIGTVGTPCQVMGL--R-KAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDI 161 (275)
T ss_pred HHHhcCCCEEEEEccchHHHHH--H-HHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEe
Confidence 4333356799999999999752 2 22221 1122 1343 566 3566678889999989999999876555
No 69
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.14 E-value=75 Score=28.68 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeehhhHHHHHHHHHHHhCCC
Q psy9933 11 ASIVRDIIKAVAEVA-PKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLN 81 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~-p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~R~~~~la~~l~v~ 81 (208)
-++.++++.+=+... |+| =+|||||-..-+.+ -+.-...+.-.|+.-|.=+.+-.-..+|++.||+
T Consensus 245 Rq~~re~a~~rm~~~Vp~A-dvVItNPTH~AVAl----kY~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ip 311 (363)
T COG1377 245 RQMQREIARRRMMSDVPKA-DVVITNPTHYAVAL----KYDPEKMPAPVVVAKGVDLVALKIREIAKEHGIP 311 (363)
T ss_pred HHHHHHHHHHHHHhhCCCC-CEEeeCcCceeeee----eeccccCCCCEEEEeCCcHHHHHHHHHHHHcCCc
Confidence 356667766554444 888 56789999986532 1222335566899999744444445667765543
No 70
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=33.48 E-value=32 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=29.1
Q ss_pred CeEEe--ehhhHHHHHHHHHHHhCCCCCccccce--eccC
Q psy9933 58 RLFGV--TTLDIVRANTFVAEAKGLNPTDVNVPV--IGGH 93 (208)
Q Consensus 58 ~ViG~--~~LDs~R~~~~la~~l~v~~~~v~~~V--iGeH 93 (208)
-|+|+ .+-||.|+..-+++.||++|-.|..++ .|.+
T Consensus 13 FivGfRvLtSdtR~A~~~Ls~rL~I~Pv~iESMl~qMGk~ 52 (148)
T PF06711_consen 13 FIVGFRVLTSDTRRAIRRLSERLNIKPVYIESMLDQMGKR 52 (148)
T ss_pred heeeEEecccchHHHHHHHHHHhCCCceeHHHHHHHHhHh
Confidence 37888 479999999999999999998886443 4544
No 71
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=32.25 E-value=1.2e+02 Score=25.55 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeeh------hhHHHHHHHHHHHhCCCCCcc
Q psy9933 13 IVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTT------LDIVRANTFVAEAKGLNPTDV 85 (208)
Q Consensus 13 Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~------LDs~R~~~~la~~l~v~~~~v 85 (208)
++.-+-+.+.+.+.+++++-+|==+|..+ ++.++.++. .+++|+|+.+ -.+..--..+++.+|++...+
T Consensus 5 l~~~L~~~~~~~g~~~vVvglSGGiDSav--~A~La~~Al--g~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i 79 (242)
T PF02540_consen 5 LVDFLRDYVKKSGAKGVVVGLSGGIDSAV--VAALAVKAL--GPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVI 79 (242)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETSSHHHHH--HHHHHHHHH--GGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCCHHH--HHHHHHHHh--hhccccccccccccCChHHHHHHHHHHHHhCCCeecc
Confidence 34445555666778888888888888864 455666664 4678888732 223334456777777665444
No 72
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=31.98 E-value=60 Score=26.23 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q psy9933 12 SIVRDIIKAVAEVAPKALIGIISNP 36 (208)
Q Consensus 12 ~Iv~~i~~~i~~~~p~~iiivvtNP 36 (208)
.+-+.|+++|.++.|+++++++.|-
T Consensus 89 ~~a~kIadki~~~~~~a~ll~vdn~ 113 (182)
T cd08060 89 PVAKKIADKIAENFSNACLLMVDNE 113 (182)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCc
Confidence 6788999999999999999999984
No 73
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.89 E-value=1e+02 Score=26.37 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=36.8
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|...++.++...+. ..|++.+++++.|+.. .++.+|++++.+.+.+.
T Consensus 16 g~iD~~~l~~l~~~l~~---~Gv~gi~v~GstGE~~-----------~Ls~eEr~~l~~~~~~~ 65 (289)
T cd00951 16 GSFDEDAYRAHVEWLLS---YGAAALFAAGGTGEFF-----------SLTPDEYAQVVRAAVEE 65 (289)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECcCCcCcc-----------cCCHHHHHHHHHHHHHH
Confidence 35888888888877754 5688887777756542 37788888888877664
No 74
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=31.74 E-value=34 Score=30.58 Aligned_cols=39 Identities=38% Similarity=0.437 Sum_probs=28.3
Q ss_pred ecCCeeEEec--cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 165 PQKNGIEKNL--GLGKLSDFEKELVKAAVPELKKNIAKGEE 203 (208)
Q Consensus 165 ig~~Gv~~i~--~lp~L~~~E~~~l~~sa~~l~~~i~~~~~ 203 (208)
+||+|...-+ .+..|+++|+..+=+.++.+|+.++.+++
T Consensus 33 lgkkg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~ 73 (339)
T PRK00488 33 LGKKGELTELLKGLGKLPPEERKEAGALINELKQAIEAALE 73 (339)
T ss_pred hCCchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544433 35578999999999999999988877654
No 75
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=31.14 E-value=1.4e+02 Score=26.62 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCC------CCeEEe--e-hhhHHHHHHHHHHHhCCCCC
Q psy9933 13 IVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDP------RRLFGV--T-TLDIVRANTFVAEAKGLNPT 83 (208)
Q Consensus 13 Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~------~~ViG~--~-~LDs~R~~~~la~~l~v~~~ 83 (208)
.+..+.++..+++.+ .+.|+.-|++++. .+-+++....-+ .-+||+ + +.+-.-++.++-+.+++++.
T Consensus 129 ~l~~L~ea~~~~g~~-rvavvG~PC~i~a---vrk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~ 204 (332)
T COG1035 129 NLSALKEAVRKYGLE-RVAVVGTPCQIQA---VRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPE 204 (332)
T ss_pred hHHHHHHHHhhcCCc-eEEEeecchHHHH---HHHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHH
Confidence 455555666666653 6888999999984 234444443333 235787 3 45555579999999999999
Q ss_pred ccccceec
Q psy9933 84 DVNVPVIG 91 (208)
Q Consensus 84 ~v~~~ViG 91 (208)
+|..+.|+
T Consensus 205 dV~k~di~ 212 (332)
T COG1035 205 DVEKMDIR 212 (332)
T ss_pred HeEEEEee
Confidence 99988887
No 76
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=30.49 E-value=1.1e+02 Score=26.59 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCcc--ccHHHHHHHHHHcCCCCCCCeEEeeh
Q psy9933 15 RDIIKAVAEVAPKALIGIISNPVN--STVPIAAEVLKKAGVFDPRRLFGVTT 64 (208)
Q Consensus 15 ~~i~~~i~~~~p~~iiivvtNPvD--~~~~~~~~~~~~~~~~~~~~ViG~~~ 64 (208)
+++++.+.+++++.+|.-.|||.. -.+| +-+++.+ +-+.++++|.
T Consensus 121 ~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p---e~a~~~t--~G~ai~ATGs 167 (279)
T cd05312 121 EEVVRAMAKSNERPIIFALSNPTSKAECTA---EDAYKWT--DGRALFASGS 167 (279)
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCccccCH---HHHHHhh--cCCEEEEeCC
Confidence 578889999999999999999985 3333 3344443 1245888875
No 77
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=30.42 E-value=64 Score=21.20 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.6
Q ss_pred ccCCC-CCHHHHHHHHHHHHHH
Q psy9933 174 LGLGK-LSDFEKELVKAAVPEL 194 (208)
Q Consensus 174 ~~lp~-L~~~E~~~l~~sa~~l 194 (208)
+.+|+ ||+.|++.+...|..+
T Consensus 20 l~f~p~lt~~eR~~vH~~a~~~ 41 (60)
T cd02640 20 MVFSPEFSKEERALIHQIAQKY 41 (60)
T ss_pred EEcCCCCCHHHHHHHHHHHHHc
Confidence 44565 9999999999887753
No 78
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.27 E-value=1.5e+02 Score=25.05 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=35.5
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++..+..... .-|++.+++++.|+.. .++.+|+.++.+.+.+.
T Consensus 16 g~iD~~~~~~~i~~l~~---~Gv~gl~v~GstGE~~-----------~lt~~Er~~l~~~~~~~ 65 (284)
T cd00950 16 GSVDFDALERLIEFQIE---NGTDGLVVCGTTGESP-----------TLSDEEHEAVIEAVVEA 65 (284)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECCCCcchh-----------hCCHHHHHHHHHHHHHH
Confidence 36888888888877653 5678777777756532 36778888888777654
No 79
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=30.03 E-value=1.6e+02 Score=25.19 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 64 TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 64 ~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
.+|--.++..+...+. .-|++.++.++.|+.. .++.+|+.++.+.+++.
T Consensus 18 ~iD~~~l~~~i~~l~~---~Gv~gi~~~Gs~GE~~-----------~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 18 SVDFAALRKLVDYLIA---NGTDGLVVVGTTGESP-----------TLTHEEHEELIRAVVEA 66 (292)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECCcCCccc-----------cCCHHHHHHHHHHHHHH
Confidence 6888888888877764 5578777777756532 36778888887777664
No 80
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=29.27 E-value=1.6e+02 Score=25.23 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=35.6
Q ss_pred ehhhHHHHHHHHHHHhCCCCCc-cccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTD-VNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~-v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++..+-..+. .. |++.+++|+.|+.. .++.+|++++.+.+.+.
T Consensus 16 g~iD~~~~~~~i~~~i~---~G~v~gi~~~GstGE~~-----------~Lt~eEr~~~~~~~~~~ 66 (290)
T TIGR00683 16 GTINEKGLRQIIRHNID---KMKVDGLYVGGSTGENF-----------MLSTEEKKEIFRIAKDE 66 (290)
T ss_pred CCcCHHHHHHHHHHHHh---CCCcCEEEECCcccccc-----------cCCHHHHHHHHHHHHHH
Confidence 36888888888876643 33 78877777767642 37788888888877654
No 81
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.39 E-value=88 Score=26.64 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 64 TLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 64 ~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
.+|-..++..+-..+ ...|++.+++++.|+.. .++.+|+.++.+.+.+.
T Consensus 18 ~id~~~~~~~i~~l~---~~Gv~gl~~~GstGE~~-----------~Lt~~Er~~l~~~~~~~ 66 (289)
T PF00701_consen 18 SIDEDALKRLIDFLI---EAGVDGLVVLGSTGEFY-----------SLTDEERKELLEIVVEA 66 (289)
T ss_dssp SB-HHHHHHHHHHHH---HTTSSEEEESSTTTTGG-----------GS-HHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---HcCCCEEEECCCCcccc-----------cCCHHHHHHHHHHHHHH
Confidence 477777777776654 23578888887767643 37788888888887764
No 82
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=27.60 E-value=73 Score=27.53 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q psy9933 11 ASIVRDIIKAVAEVAPKALIGIISNPVNS 39 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~p~~iiivvtNPvD~ 39 (208)
.+-++++.+.+++..|+. +||+|||.-.
T Consensus 34 ~~a~~~~~~~v~~~~PDv-vVvis~dH~~ 61 (278)
T PRK13364 34 FDGFPPVREWLEKVKPDV-AVVFYNDHGL 61 (278)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEECCchHh
Confidence 456889999999999994 7778888744
No 83
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.41 E-value=1.7e+02 Score=25.21 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=36.6
Q ss_pred ehhhHHHHHHHHHHHhCCCCCccccceeccCCCCceeecccCCCCCCCCCHHHHHHHHHHHHHH
Q psy9933 63 TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 126 (208)
Q Consensus 63 ~~LDs~R~~~~la~~l~v~~~~v~~~ViGeH~g~~~vp~~S~~~~~~~~~~~~~~~l~~~v~~~ 126 (208)
+.+|-..++.++...+. ..|++.+++++.|+.. .++.+|+.++.+.+.+.
T Consensus 23 g~iD~~~l~~li~~l~~---~Gv~Gi~~~GstGE~~-----------~Lt~eEr~~~~~~~~~~ 72 (303)
T PRK03620 23 GSFDEAAYREHLEWLAP---YGAAALFAAGGTGEFF-----------SLTPDEYSQVVRAAVET 72 (303)
T ss_pred CCcCHHHHHHHHHHHHH---cCCCEEEECcCCcCcc-----------cCCHHHHHHHHHHHHHH
Confidence 45788888888876654 5688888887766532 37888988888877664
No 84
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=27.03 E-value=78 Score=25.91 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCC
Q psy9933 12 SIVRDIIKAVAEVAPKALIGIISN 35 (208)
Q Consensus 12 ~Iv~~i~~~i~~~~p~~iiivvtN 35 (208)
++-+.++++|.+++|+++++++-|
T Consensus 95 ~~a~kiad~I~~~~~~a~ll~idn 118 (196)
T PF03665_consen 95 PVAEKIADKIAENFSDACLLMIDN 118 (196)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEC
Confidence 457899999999999999999887
No 85
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=26.87 E-value=84 Score=26.30 Aligned_cols=37 Identities=35% Similarity=0.565 Sum_probs=26.1
Q ss_pred CCCeEEEEeC----CCccccHHHHHHHHHHcCCCCCCCeEEeehhhHH
Q psy9933 25 APKALIGIIS----NPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIV 68 (208)
Q Consensus 25 ~p~~iiivvt----NPvD~~~~~~~~~~~~~~~~~~~~ViG~~~LDs~ 68 (208)
.|+-+++|+| ||+.+= ++++.+..+ -+||++|.||-.
T Consensus 103 ~~~DVliviSnSGrNpvpie---~A~~~rekG----a~vI~vTSl~yS 143 (243)
T COG4821 103 RPNDVLIVISNSGRNPVPIE---VAEYAREKG----AKVIAVTSLDYS 143 (243)
T ss_pred CCCCEEEEEeCCCCCCcchH---HHHHHHhcC----CeEEEEehhhhh
Confidence 4666888887 566553 356666665 589999988865
No 86
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=26.71 E-value=1.5e+02 Score=19.59 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKKNIAKGEE 203 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~~i~~~~~ 203 (208)
.||++|++.+.+-|+..++..+.-+.
T Consensus 45 ~Ls~~EK~~Y~~~A~~~k~~y~~e~~ 70 (73)
T PF09011_consen 45 SLSEEEKEPYEERAKEDKERYEREMK 70 (73)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999998876654
No 87
>PRK13980 NAD synthetase; Provisional
Probab=26.31 E-value=3.3e+02 Score=22.94 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEeeh------hhHHHHHHHHHHHhCCCCCcc
Q psy9933 12 SIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTT------LDIVRANTFVAEAKGLNPTDV 85 (208)
Q Consensus 12 ~Iv~~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~~------LDs~R~~~~la~~l~v~~~~v 85 (208)
.++.-+-+.+.+++.+.+++-+|-=+|..+ +++++.+.. .+.+|++++. -+....-..+++.+|++...+
T Consensus 16 ~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv--~a~l~~~~~--~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i 91 (265)
T PRK13980 16 IIVDFIREEVEKAGAKGVVLGLSGGIDSAV--VAYLAVKAL--GKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVI 91 (265)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCHHHHH--HHHHHHHHh--CccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 466667777788888999999999999976 345666653 3457888741 234555667888998876544
No 88
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=26.25 E-value=82 Score=21.77 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKK 196 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~ 196 (208)
+|+++|++.|+.+.-.+|-
T Consensus 54 NL~~~E~~lL~~~L~eLRm 72 (74)
T PF08899_consen 54 NLDEEEERLLESALYELRM 72 (74)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 6999999999988877763
No 89
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=26.21 E-value=1.2e+02 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=49.1
Q ss_pred HhHHHHHHHHHHHHHhC-CCe-EEEEeCCCccccHHHHHHHHHHcCCCCCCCeEEee---hhhHHHHHHHHHHH
Q psy9933 9 TNASIVRDIIKAVAEVA-PKA-LIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT---TLDIVRANTFVAEA 77 (208)
Q Consensus 9 ~Na~Iv~~i~~~i~~~~-p~~-iiivvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~---~LDs~R~~~~la~~ 77 (208)
.+..++.++.+.+...+ .-. +-=|..||.+-++. ..+.....+.+.-|||+| .+|.+++-.+++..
T Consensus 41 ~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~---~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~ 111 (377)
T COG1454 41 AKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVE---AGAEVAREFGPDTIIALGGGSVIDAAKAIALLAEN 111 (377)
T ss_pred ccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHH---HHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHhhC
Confidence 35678889999999888 222 33356699888764 344555667899999993 49999999988884
No 90
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=25.50 E-value=1.2e+02 Score=19.44 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=16.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 175 GLGKLSDFEKELVKAAVPELKKNIAKGE 202 (208)
Q Consensus 175 ~lp~L~~~E~~~l~~sa~~l~~~i~~~~ 202 (208)
++|.||-+|++ ++++.|++....|+
T Consensus 4 ~lp~LtHeeQQ---~AvE~Iq~LMaqGm 28 (51)
T PF03701_consen 4 DLPSLTHEEQQ---QAVERIQELMAQGM 28 (51)
T ss_pred CCCCCCHHHHH---HHHHHHHHHHHhcc
Confidence 46899999986 35556666555443
No 91
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.04 E-value=93 Score=20.38 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=17.0
Q ss_pred EeccCC-CCCHHHHHHHHHHHHHH
Q psy9933 172 KNLGLG-KLSDFEKELVKAAVPEL 194 (208)
Q Consensus 172 ~i~~lp-~L~~~E~~~l~~sa~~l 194 (208)
..+.+| .||+.|++.+..-|...
T Consensus 17 ~~l~Fpp~ls~~eR~~vH~~a~~~ 40 (59)
T cd06007 17 EEYEFPSSLTNHERAVIHRLCRKL 40 (59)
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHc
Confidence 334455 59999999999877653
No 92
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=24.76 E-value=13 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKKNI 198 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~~i 198 (208)
.||++|+++|..+..++|+.+
T Consensus 19 ~Ls~ed~~~L~~~l~~vr~~L 39 (79)
T PF08938_consen 19 ELSPEDQAQLYSCLPQVREVL 39 (79)
T ss_dssp H-TCHHHHHHCHHCCCHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999754
No 93
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=24.44 E-value=3.5e+02 Score=21.84 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCccc
Q psy9933 14 VRDIIKAVAEVAPKALIGIISNPVNS 39 (208)
Q Consensus 14 v~~i~~~i~~~~p~~iiivvtNPvD~ 39 (208)
+.++.+++...-.+.++|-++||++.
T Consensus 81 ~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 VLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHhccCCEEEEeccCcee
Confidence 33444444433333466666666654
No 94
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=24.13 E-value=3e+02 Score=25.61 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHhhhc-C-----------------CCCcEEEe----ecCCeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy9933 145 FEKERQQFSPF-I-----------------KTFASFFS----PQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 201 (208)
Q Consensus 145 ~a~~~~i~ai~-~-----------------~~~~~~~s----ig~~Gv~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~ 201 (208)
..+++|++||+ | .|.+..+= ++++|++.+.. ++|.+.-...++.....-+-.++.+
T Consensus 320 e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~~i~~e~l~veA~ 397 (442)
T COG1486 320 EYASNIINAIENNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHTNINVEELTVEAA 397 (442)
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999996 1 24444433 99999999775 5899988887776655544444433
No 95
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=24.02 E-value=1.7e+02 Score=22.62 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=41.6
Q ss_pred CeEEEEeCCCccccHHHHHHHHHHcCCCCCC----CeEEe---ehhhHHHHHHHHHHHhCCCCCccccceec
Q psy9933 27 KALIGIISNPVNSTVPIAAEVLKKAGVFDPR----RLFGV---TTLDIVRANTFVAEAKGLNPTDVNVPVIG 91 (208)
Q Consensus 27 ~~iiivvtNPvD~~~~~~~~~~~~~~~~~~~----~ViG~---~~LDs~R~~~~la~~l~v~~~~v~~~ViG 91 (208)
+-.|+++.-|+++-.. ..++ +.. ++.. -+||+ |+.+-..++.++.+.+++++.+|.-+-+-
T Consensus 4 ~~kV~~vG~PCqi~al--~~~~-~~~-~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r 71 (161)
T PF04432_consen 4 GKKVAFVGTPCQIAAL--RKLL-KRN-YENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFR 71 (161)
T ss_pred CCEEEEEeccHHHHHH--HHHH-hhC-cccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEe
Confidence 3478999999999642 2222 222 2222 46777 36888888999999999999988544433
No 96
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.56 E-value=2.2e+02 Score=19.69 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKA---AVPELKKNIAKGEEFV 205 (208)
Q Consensus 178 ~L~~~E~~~l~~---sa~~l~~~i~~~~~~~ 205 (208)
.|+++|+++|++ .++.+++.|+..++.+
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888876665 5777778887777765
No 97
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=23.38 E-value=1.5e+02 Score=25.33 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCcc--ccHHHHHHHHHHcCCCCCCC-eEEeeh
Q psy9933 15 RDIIKAVAEVAPKALIGIISNPVN--STVPIAAEVLKKAGVFDPRR-LFGVTT 64 (208)
Q Consensus 15 ~~i~~~i~~~~p~~iiivvtNPvD--~~~~~~~~~~~~~~~~~~~~-ViG~~~ 64 (208)
+++++.+.+++++.+|.=.|||.. -.+| +-+++.+ ..+ ++++|.
T Consensus 122 ~evv~~Ma~~~erPIIF~LSNPt~~aE~~p---eda~~~t---~g~ai~AtGS 168 (255)
T PF03949_consen 122 EEVVRAMAKHNERPIIFPLSNPTPKAECTP---EDAYEWT---DGRAIFATGS 168 (255)
T ss_dssp HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H---HHHHHTT---TSEEEEEESS
T ss_pred HHHHHHHhccCCCCEEEECCCCCCcccCCH---HHHHhhC---CceEEEecCC
Confidence 578899999999999999999998 5554 4455554 344 478874
No 98
>PF15605 Toxin_52: Putative toxin 52
Probab=23.21 E-value=1.8e+02 Score=21.37 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=29.1
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9933 170 IEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 206 (208)
Q Consensus 170 v~~i~~lp~L~~~E~~~l~~sa~~l~~~i~~~~~~~~ 206 (208)
++..+.=|.|++.+++.++...+.-...+++.++|+.
T Consensus 66 le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~~ 102 (103)
T PF15605_consen 66 LEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFFP 102 (103)
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3443433689999999999998888888998888874
No 99
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.98 E-value=3.8e+02 Score=21.05 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC--c--cccHHHHHHHHHHcCCCC-CCCeEEe---e-hhhHHHHHHHHHHHhCCCC
Q psy9933 12 SIVRDIIKAVAEVAPKALIGIISNP--V--NSTVPIAAEVLKKAGVFD-PRRLFGV---T-TLDIVRANTFVAEAKGLNP 82 (208)
Q Consensus 12 ~Iv~~i~~~i~~~~p~~iiivvtNP--v--D~~~~~~~~~~~~~~~~~-~~~ViG~---~-~LDs~R~~~~la~~l~v~~ 82 (208)
+.+.++.+.+..+++=.++-+-..+ - +...-.-.+...-...++ ...+|.+ | .+||.-|..++.+..+-..
T Consensus 18 ~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~ 97 (157)
T PRK00103 18 DGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGR 97 (157)
T ss_pred HHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC
Confidence 6788999999998875444442211 1 110000011111111233 3567877 5 5999999999998754444
Q ss_pred CccccceeccC
Q psy9933 83 TDVNVPVIGGH 93 (208)
Q Consensus 83 ~~v~~~ViGeH 93 (208)
+++ +++|||.
T Consensus 98 ~~i-~F~IGGa 107 (157)
T PRK00103 98 SDV-AFVIGGA 107 (157)
T ss_pred ccE-EEEEcCc
Confidence 444 5999975
No 100
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=22.77 E-value=2e+02 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~~i~~~~~~~ 205 (208)
+.+++|+++|..+...+.+-++..+++-
T Consensus 2 KVt~~EkeQLS~AID~mnEGLD~fI~lY 29 (84)
T PF11458_consen 2 KVTDQEKEQLSTAIDRMNEGLDTFIQLY 29 (84)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5789999999999999988777766543
No 101
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=22.58 E-value=1e+02 Score=26.57 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEeCCCccc
Q psy9933 8 NTNASIVRDIIKAVAEVAPKALIGIISNPVNS 39 (208)
Q Consensus 8 ~~Na~Iv~~i~~~i~~~~p~~iiivvtNPvD~ 39 (208)
..-.+-++++.+.+.+..||. +||++||.-.
T Consensus 31 ~~~~~a~~~~~~~i~~~~PD~-iVvi~~dH~~ 61 (277)
T cd07950 31 APIFDGYEPVKQWLAEQKPDV-LFMVYNDHVT 61 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCE-EEEEcCcHHH
Confidence 455667899999999999995 6777887744
No 102
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=22.37 E-value=2.1e+02 Score=21.12 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=31.8
Q ss_pred cCCCCCCCeEEeehhhH-H---------HHHHHHHHHhCCCCCccccceeccCCCC
Q psy9933 51 AGVFDPRRLFGVTTLDI-V---------RANTFVAEAKGLNPTDVNVPVIGGHAGI 96 (208)
Q Consensus 51 ~~~~~~~~ViG~~~LDs-~---------R~~~~la~~l~v~~~~v~~~ViGeH~g~ 96 (208)
..++.-+.|+=+...+. . =.-..+.++++++++.-.+..||-+||.
T Consensus 36 ~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 36 RCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV 91 (118)
T ss_pred hhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence 55677777776642211 1 1224677889999999999999999553
No 103
>PTZ00323 NAD+ synthase; Provisional
Probab=22.28 E-value=3.8e+02 Score=23.36 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCCccccHHHHHHHHHHcCCC---CCCCeEEeeh--h---hHHHHHHHHHHHhCCCCCccc
Q psy9933 16 DIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVF---DPRRLFGVTT--L---DIVRANTFVAEAKGLNPTDVN 86 (208)
Q Consensus 16 ~i~~~i~~~~p~~iiivvtNPvD~~~~~~~~~~~~~~~~---~~~~ViG~~~--L---Ds~R~~~~la~~l~v~~~~v~ 86 (208)
.+-+.+.+.+.+++++=+|-=+|..+. +.++.++.|- |..+++|+.+ . ++...-..+++.+|++...|.
T Consensus 36 ~L~~~l~~~g~~~vVVglSGGVDSav~--aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~id 112 (294)
T PTZ00323 36 KLNEYMRRCGLKGCVTSVSGGIDSAVV--LALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVD 112 (294)
T ss_pred HHHHHHHHcCCCcEEEECCCCHHHHHH--HHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 333444446688899999999998753 4466666543 3367888742 2 444455667788888776654
No 104
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.17 E-value=1e+02 Score=26.51 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCCc
Q psy9933 11 ASIVRDIIKAVAEVAPKALIGIISNPV 37 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~p~~iiivvtNPv 37 (208)
.+-++++...+.+..|+. +||+|||.
T Consensus 34 ~~a~~~~~~~v~~~~PD~-iVvis~dH 59 (276)
T cd07949 34 FDGFPPVHDWLEKAKPDV-AVVFYNDH 59 (276)
T ss_pred HHHHHHHHHHHHHcCCCE-EEEECCcH
Confidence 466889999999999996 57778877
No 105
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.82 E-value=2.7e+02 Score=25.07 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhCCCeEEE--EeCCCccccHHHHHHHHHHcCCCCCCCeEEee---hhhHHHHHHHHH
Q psy9933 10 NASIVRDIIKAVAEVAPKALIG--IISNPVNSTVPIAAEVLKKAGVFDPRRLFGVT---TLDIVRANTFVA 75 (208)
Q Consensus 10 Na~Iv~~i~~~i~~~~p~~iii--vvtNPvD~~~~~~~~~~~~~~~~~~~~ViG~~---~LDs~R~~~~la 75 (208)
+..++.++...+.+.+-...+. +..||-.-.+.- .+..+......-|||+| .+|++++-..+.
T Consensus 62 ~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~---~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~ 129 (395)
T PRK15454 62 QAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCA---AVAQLRESGCDGVIAFGGGSVLDAAKAVALLV 129 (395)
T ss_pred hCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHH---HHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 3567788888888877654332 344886665433 33333335688999994 499999977664
No 106
>PF02912 Phe_tRNA-synt_N: Aminoacyl tRNA synthetase class II, N-terminal domain; InterPro: IPR004188 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases []. This is the N-terminal domain of phenylalanyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3PCO_C 1EIY_A 2RHS_C 2RHQ_A 2IY5_A.
Probab=21.40 E-value=5.2 Score=27.38 Aligned_cols=39 Identities=33% Similarity=0.302 Sum_probs=27.0
Q ss_pred ecCCeeEEec--cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 165 PQKNGIEKNL--GLGKLSDFEKELVKAAVPELKKNIAKGEE 203 (208)
Q Consensus 165 ig~~Gv~~i~--~lp~L~~~E~~~l~~sa~~l~~~i~~~~~ 203 (208)
+|++|...-+ .|..|+++|+..+=+.++.+|..++..+.
T Consensus 17 LGKKG~lt~~~k~l~~l~~eek~~~G~~iN~~K~~i~~~~~ 57 (73)
T PF02912_consen 17 LGKKGELTQLLKQLKKLPPEEKPEFGKKINELKQEIEEALE 57 (73)
T ss_dssp HHHHHHCCSCTCTTTTCGGCTTTHHHHCCHHHHCHHCHHHH
T ss_pred hCCccHHHHHHHHhhCCCHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555655443 35678899999888888888877765543
No 107
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=20.89 E-value=3.5e+02 Score=21.14 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCC----ccccHHHHHHHHHHcCCC-CCCCeEEe---e-hhhHHHHHHHHHHHhCCC
Q psy9933 11 ASIVRDIIKAVAEVAPKALIGIISNP----VNSTVPIAAEVLKKAGVF-DPRRLFGV---T-TLDIVRANTFVAEAKGLN 81 (208)
Q Consensus 11 a~Iv~~i~~~i~~~~p~~iiivvtNP----vD~~~~~~~~~~~~~~~~-~~~~ViG~---~-~LDs~R~~~~la~~l~v~ 81 (208)
.+.+.++.+.+..|++=-++-+=..+ .+.--..-.+...-...+ +...+|.+ | .+||.-|...|.+..+-.
T Consensus 17 ~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g 96 (155)
T PF02590_consen 17 KELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQG 96 (155)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcC
Confidence 46788999999999873333333332 111111111111112223 46677877 4 499999999999987655
Q ss_pred CCccccceeccCCCCce-e-----ecccCCCCCCCCCHHH-HHHHHHHHHHHHHHhhc
Q psy9933 82 PTDVNVPVIGGHAGITI-I-----PLISQATPSVSFPDDQ-LKALTGRIQEAVSLKNG 132 (208)
Q Consensus 82 ~~~v~~~ViGeH~g~~~-v-----p~~S~~~~~~~~~~~~-~~~l~~~v~~~~~~~~~ 132 (208)
.+++ +++|||.-|=+. + -.||-.. ..|+++- +--+.+++-.++.+.+|
T Consensus 97 ~~~i-~F~IGG~~G~~~~~~~~a~~~lSLS~--mTfpH~larlvL~EQiYRA~tI~~g 151 (155)
T PF02590_consen 97 KSDI-VFIIGGADGLSEEVRKRADEKLSLSK--MTFPHQLARLVLLEQIYRAFTILNG 151 (155)
T ss_dssp S-EE-EEEE-BTTB--HHHHHH-SEEEES-S--S---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CceE-EEEEecCCCCCHHHHhhcCceEEEec--CCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 5554 589997733211 0 1222221 2366554 22356666555454433
No 108
>PRK05114 hypothetical protein; Provisional
Probab=20.72 E-value=1.5e+02 Score=19.55 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=16.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy9933 175 GLGKLSDFEKELVKAAVPELKKNIAKGE 202 (208)
Q Consensus 175 ~lp~L~~~E~~~l~~sa~~l~~~i~~~~ 202 (208)
++|.||-+|++ ++++.|++...+|+
T Consensus 4 ~lp~LtHeeQQ---~AVErIq~LMaqGm 28 (59)
T PRK05114 4 GLPSLTHEQQQ---KAVERIQELMAQGM 28 (59)
T ss_pred CcccCCHHHHH---HHHHHHHHHHHccc
Confidence 46889999875 35555665555443
No 109
>PF14164 YqzH: YqzH-like protein
Probab=20.57 E-value=1.4e+02 Score=20.00 Aligned_cols=19 Identities=37% Similarity=0.237 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELVKAAVPELKK 196 (208)
Q Consensus 178 ~L~~~E~~~l~~sa~~l~~ 196 (208)
+||+.|++.|.+.....++
T Consensus 25 pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 25 PLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 6999999999988777664
No 110
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.46 E-value=2.6e+02 Score=19.31 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy9933 178 KLSDFEKELV---KAAVPELKKNIAKGEEFV 205 (208)
Q Consensus 178 ~L~~~E~~~l---~~sa~~l~~~i~~~~~~~ 205 (208)
.||++|+++| -+.++.+.+.|+..+..+
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889998655 456788888888877766
No 111
>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=20.41 E-value=1.3e+02 Score=20.09 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=17.6
Q ss_pred eEEeccCCCCCHHHHHHHHHHHH
Q psy9933 170 IEKNLGLGKLSDFEKELVKAAVP 192 (208)
Q Consensus 170 v~~i~~lp~L~~~E~~~l~~sa~ 192 (208)
......+|++|+.|++.+...++
T Consensus 16 ~~~~~~l~pM~~~eRkivHDv~~ 38 (61)
T cd02636 16 VRTREKFQPMDKVERSIVHDVAE 38 (61)
T ss_pred cccccccCCCCHHHHHHHHHHHH
Confidence 34555678899999999988653
No 112
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=20.05 E-value=63 Score=25.65 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHhCCCCCccccce
Q psy9933 64 TLDIVRANTFVAEAKGLNPTDVNVPV 89 (208)
Q Consensus 64 ~LDs~R~~~~la~~l~v~~~~v~~~V 89 (208)
.-...+++..+|+.+|+++..|+++|
T Consensus 163 ~~~~~~i~~~la~~~~i~~~~I~V~~ 188 (188)
T PF09581_consen 163 SEEEEEIKQYLADFYGISPEQIKVYV 188 (188)
T ss_pred hHHHHHHHHHHHHHhCCCHHHeEEeC
Confidence 36678899999999999999998764
Done!