RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9933
(208 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 254 bits (650), Expect = 3e-85
Identities = 101/229 (44%), Positives = 135/229 (58%), Gaps = 22/229 (9%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLF NA IV+ + + +A+ P+A++ +ISNPVNSTVPIAAEV KKAG +DP+RL
Sbjct: 92 MTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLL 151
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVT LD+VRANTFVAE GL+P DV+VPV+GGHAG+TI+PL+SQ P SF +++ LT
Sbjct: 152 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLT 211
Query: 121 GRIQEA----VSLKNGIEK----------NLGLGKLSDFEKERQQFSP-FIK---TFASF 162
RIQ V K G L + F+ T F
Sbjct: 212 DRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPF 271
Query: 163 FS-PQK---NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
F+ + NGIE+ LG L+++E+ ++ A EL +I KG F+
Sbjct: 272 FASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 252 bits (647), Expect = 6e-85
Identities = 109/236 (46%), Positives = 145/236 (61%), Gaps = 37/236 (15%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M R DLFN NA IV+++++ VA+ PKA IGII+NPVN+TV IAAEVLKKAGV+D +LF
Sbjct: 85 MDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLF 144
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDI+R+NTFVAE KG P +V VPVIGGH+G+TI+PL+SQ P VSF + ++ LT
Sbjct: 145 GVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLT 203
Query: 121 GRIQEA----VSLKNG------------------IEKNLGLGKLSDFEKERQQFSPFIK- 157
RIQ A V K G + + L ++ +++
Sbjct: 204 KRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQ-------GEQGVVECAYVEG 256
Query: 158 --TFASFFSPQ----KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
+A FFS KNG+E+ +G LS FE+ ++ + LKK+IA GEEFV K
Sbjct: 257 DGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 223 bits (571), Expect = 2e-73
Identities = 94/136 (69%), Positives = 105/136 (77%), Gaps = 4/136 (2%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTRDDLFNTNA+IV + A A+ P A+I IISNPVNST+PI AEV KK GV++P ++F
Sbjct: 84 MTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIF 143
Query: 61 GVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALT 120
GVTTLDIVRAN FVAE KGL+P V+VPVIGGHAG TIIPLISQ TP V FP DQL LT
Sbjct: 144 GVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLT 203
Query: 121 GRIQEA----VSLKNG 132
GRIQEA V K G
Sbjct: 204 GRIQEAGTEVVKAKAG 219
Score = 58.4 bits (142), Expect = 1e-10
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 205
K GIEKNLG+GK+S FE++++ A+PELK +I KGEEFV
Sbjct: 272 KKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 90.8 bits (226), Expect = 4e-22
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKAL-IGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
MTR+DL NA I + K + P + II NP + T + L +G P ++
Sbjct: 92 MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPSQV 147
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDV-NVPVIGGHAGITIIPLISQAT 106
+ LD R + +A+ G+ + V N GGH G + S A
Sbjct: 148 TTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFASTAK 194
Score = 29.5 bits (67), Expect = 0.74
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 199
K+G++ + ++ E+ +K + L K
Sbjct: 283 KDGVKHSDINQLGNEAERAALKESYSHLAKLRD 315
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 84.9 bits (211), Expect = 5e-20
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL N IV + + E +P + I +++NP++ + V +A F R+
Sbjct: 85 MSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFPTNRVM 140
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R +F+AE ++ DV ++GGH G T++PL T
Sbjct: 141 GMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYTT 186
Score = 26.3 bits (59), Expect = 7.4
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
G+E+ + + L EK +K + + N+
Sbjct: 271 AGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDD 303
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 84.5 bits (210), Expect = 6e-20
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R+DL NA I R I A ++P A+I +++NP++ + + F R+
Sbjct: 86 MSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVI 141
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G LD R TF+A G++ DV ++GGH G ++PL +
Sbjct: 142 GQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFSC 187
Score = 26.7 bits (60), Expect = 6.5
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
G+EK L L L++ E L+ A+ ++ +
Sbjct: 273 AGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 305
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 84.5 bits (210), Expect = 7e-20
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL TN+ I++ I + +A+ +P A+I +++NPV+ + K F R+
Sbjct: 94 MSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVI 149
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G LD R TF+A+ L+ D+ V+GGH G ++PL+ +
Sbjct: 150 GQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSY 195
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 84.1 bits (209), Expect = 8e-20
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR DL NA I+ DI ++ E + SNPV+ + L +AG ++
Sbjct: 86 QTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVI 141
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT---PSVSFPDDQL 116
G LD R ++E +V ++G H G +P+ S+ + F D+
Sbjct: 142 GFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 200
Query: 117 KALTGRIQEA 126
+ L G +QE+
Sbjct: 201 EQLLGDLQES 210
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 84.1 bits (209), Expect = 8e-20
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+ L NA+ + D+ + + A A++ I +NPV+ V+ K F R+
Sbjct: 83 MTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRERVI 138
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G LD R ++++ G++ VN V+G H G + P+ ++
Sbjct: 139 GFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSS 184
Score = 27.5 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
K+GIE+ + L L++ EK AV +KK + + +
Sbjct: 269 KSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLRE 308
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 84.1 bits (209), Expect = 1e-19
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
R +L NA I+ + + V + P A + I+NP++ + +K ++
Sbjct: 88 DDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVC 143
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R TF+A+ G+N +DV+ VIGGH G ++P S +
Sbjct: 144 GMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVS 189
Score = 26.3 bits (59), Expect = 6.8
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
KNG+E L L L+ E++L+ ++ E+
Sbjct: 280 KNGVEDILEL-DLTPLEQKLLGESINEVNTISKV 312
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 84.1 bits (209), Expect = 1e-19
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR+DL NA IV+++ + + + +I ++SNP++ I V R+
Sbjct: 85 MTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVI 140
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R +F+A G++ D+N V+GGH G ++P++ T
Sbjct: 141 GMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTT 186
Score = 27.5 bits (62), Expect = 3.5
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 206
+NG+E+ + L + +L++ + + +N E +
Sbjct: 272 RNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKMLESTIG 310
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 83.7 bits (208), Expect = 1e-19
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL N ++ + + + AP+A + I+NP++ L+K ++
Sbjct: 91 MSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVV 146
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R F++E ++ DV V V+GGH G +++PL +T
Sbjct: 147 GMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYST 192
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 83.7 bits (208), Expect = 1e-19
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+RDDL N +++ + + + P A + I+NP++ I +L+K ++
Sbjct: 89 MSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIV 144
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R TF+A+ ++ V V+GGH G T++PL +
Sbjct: 145 GMAGVLDSARFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMSN 190
Score = 27.1 bits (61), Expect = 4.2
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 167 KNGIEK-NLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 207
NG+ + ++SD E+E ++ ++ +K E +AK
Sbjct: 283 ANGVRPIEV---EISDKEREQLQVSINAIKDLNKAAAEILAK 321
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 83.3 bits (207), Expect = 2e-19
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR DL NA IV + + V + P A + I+NP++ K+ ++
Sbjct: 98 MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVC 153
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R ++ A G+ P+DV+ V+GGH G +IPL S T
Sbjct: 154 GMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVT 199
Score = 26.3 bits (59), Expect = 8.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
KNGIE + + LSD EK L +V ++ +
Sbjct: 290 KNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 82.9 bits (206), Expect = 3e-19
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR L + NA + ++ V E AP+A++ + +NPV+ + +V P R+
Sbjct: 83 ETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVV 138
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R +AE + P V+ V+G H G + + + S A
Sbjct: 139 GSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSAQ 184
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 82.6 bits (205), Expect = 3e-19
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
M+R DL TNA IV K +AE+ + +I+NPV+ + + L + F+ ++F
Sbjct: 90 MSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDV---MTYKALVDSK-FERNQVF 144
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ T LD +R +A+ G++ +V +IG H G +++PL+S +
Sbjct: 145 GLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATS 190
Score = 26.7 bits (60), Expect = 6.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
++GIE+ + + +L E + + +KK +
Sbjct: 277 RDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 82.6 bits (205), Expect = 4e-19
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R +L N +I + II V + +P+ + I+SNPV+ I V K F R+
Sbjct: 103 ESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVI 158
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G LD R + E G++P + V+G H G + +P+ S
Sbjct: 159 GSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVN 204
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 82.3 bits (204), Expect = 5e-19
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R +L N +I + II + + +P L + + K R+
Sbjct: 105 ESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRII 160
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G LD R + E G++ V VIG H G ++ + S
Sbjct: 161 GSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSGMW 206
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 81.8 bits (203), Expect = 7e-19
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR L NA ++++I + V++ AP +++ +++NPV+ + K DPR++F
Sbjct: 83 ETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVF 138
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R T +A+ G +P V+V VIG H G + +P+ S A
Sbjct: 139 GSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAM 184
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 81.4 bits (202), Expect = 1e-18
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR DL + N I + I+ V + + +NPV+ I A K R+
Sbjct: 90 ETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSGLPKERVI 145
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R ++EA + P V+ +IG H G T +P+ S A
Sbjct: 146 GSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHAN 191
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 81.4 bits (202), Expect = 1e-18
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR DL + N +I R I+++V + L + +NPV+ I K R+
Sbjct: 90 ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVI 145
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R + E + P +V+ +IG H G T +P+ SQA
Sbjct: 146 GSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 81.4 bits (202), Expect = 1e-18
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR +L N I + I+ V + + +NPV+ I K R+
Sbjct: 89 ETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLPKERVI 144
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G TTLD R ++E G P +V +IG H G T +P+ S A
Sbjct: 145 GSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHAN 190
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 81.0 bits (201), Expect = 1e-18
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR DL N I +++ + + + +I ++SNPV+ I +++K ++
Sbjct: 90 ETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVI 145
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD +R ++E G++ +V+ +IG H G + +PL S
Sbjct: 146 GSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTH 191
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 80.3 bits (199), Expect = 3e-18
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
TR DL N N I++ I+ + + + + +NPV+ I K F R+
Sbjct: 92 ETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVV 147
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T+LD R +AE ++ V+ ++G H G T P+ S A
Sbjct: 148 GSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHAN 193
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 80.3 bits (199), Expect = 3e-18
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R +L +I++ I+ + +VAP A+ +I+NPV+ IA V +K ++F
Sbjct: 91 QSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIF 146
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R +A+ G+N +V+ + G H G + +PL AT
Sbjct: 147 GSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESAT 192
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 79.9 bits (198), Expect = 3e-18
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+ D+ +N + R ++ A+ + +++ + S P V I V K F R+
Sbjct: 92 QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP----VEIMTYVTWKLSTFPANRVI 147
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQATP 107
G+ LD R + + V VIG G + S
Sbjct: 148 GIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQEE 194
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 79.8 bits (198), Expect = 3e-18
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
+R DL N N +I+ I+K V + + + +NPV+ I K F R+
Sbjct: 88 ESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVI 143
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T+LD R + + ++P V+ ++G H G + S AT
Sbjct: 144 GSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTAT 189
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 79.9 bits (198), Expect = 4e-18
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
+R+DL N+ I+R+I + + + PK I +++NP++ +V+ +A + G
Sbjct: 100 SRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICG 155
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
+ LD R +VA+A ++P DV VIG H G ++PL+ T
Sbjct: 156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYIT 200
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 79.1 bits (196), Expect = 6e-18
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
R +S+V+ + + E ++ +ISNPV+ + + + F ++
Sbjct: 89 GDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVI 144
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R V EA L+P V+ +G H G + S
Sbjct: 145 GTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVR 190
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 78.2 bits (193), Expect = 2e-17
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKA-LIGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
M R DL N I + A+ + A K+ + ++ NP N+ A+ K A
Sbjct: 95 MERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENF 151
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
+T LD RA +A G+ DV +I G+ T P ++ A
Sbjct: 152 SCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAK 198
Score = 26.2 bits (58), Expect = 8.7
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 166 QKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 208
+ + GL ++DF +E + EL + EF++ +
Sbjct: 292 KDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSSA 333
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 77.9 bits (193), Expect = 2e-17
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 2 TRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFG 61
RDDL N I+ +I + + P A I +++NPV+ + + + +G ++ G
Sbjct: 94 NRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV---MVQLLHQHSG-VPKNKIIG 149
Query: 62 V-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
+ LD R ++++ + P DVN ++G H G ++ L T
Sbjct: 150 LGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYIT 194
Score = 27.1 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 167 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 200
NG+E+ + L +L+ EK A+ E K+ A
Sbjct: 283 ANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 76.2 bits (188), Expect = 9e-17
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKAL-IGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
M R DL N I + +A+AEVA K + + ++ NP N+ IA K A +PR
Sbjct: 96 MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNF 152
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDV-NVPVIGGHAGITIIPLISQAT 106
+T LD RA +A+ G + + V G H T+ P + A
Sbjct: 153 TAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAE 199
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 76.2 bits (188), Expect = 9e-17
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPK-ALIGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
M R DL NA I KA+ VA + + ++ NP N+ IA +K A +
Sbjct: 99 MERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNF 155
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
+ LD RA + +A G + + + G+ T+ A
Sbjct: 156 TAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQ 202
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 74.8 bits (185), Expect = 2e-16
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPR-RL 59
+R DL NA I R+++ + AP A++ + SNPV+ + ++ + P +
Sbjct: 83 ESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQ---LAPGQPV 135
Query: 60 FGV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G T LD R +A+ G++ T + V+G H G + + S A
Sbjct: 136 IGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH-GDSEVLAWSSAM 182
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 74.5 bits (184), Expect = 2e-16
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLF 60
MTR DL + NA I++DI K + E AP++ I +++NP++ + ++ K +F
Sbjct: 85 MTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVF 140
Query: 61 GV-TTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
G+ LD R + A N +IG H G ++ S A
Sbjct: 141 GMGNQLDSQRLKERLYNAGARNIRRAW--IIGEH-GDSMFVAKSLAD 184
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 72.5 bits (178), Expect = 2e-15
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 1 MTRDDLFNTNASIVRDIIKAVAEVAPK-ALIGIISNPVNSTVPIAAEVLKKAGVFDPRRL 59
M R L + N I D KA+ VA K + ++ NP N+ I LK A +
Sbjct: 124 MERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNF 180
Query: 60 FGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITIIPLISQAT 106
+T LD RA +A G+ V+ I G+ T +P A
Sbjct: 181 HALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAK 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-09
Identities = 60/241 (24%), Positives = 85/241 (35%), Gaps = 69/241 (28%)
Query: 5 DLFNTNASIVRDIIKAVAEV----------APKA------LIGIISNPVNSTVPIAAEVL 48
DL+ T +V D+IK AE A K ++ + NP S P + L
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTP-DKDYL 231
Query: 49 KKAGVFDPRRLFGVTTLDIVRANTFV-AEAKGLNPTDVNVPVIG--GH-AGITIIPLISQ 104
+ P L GV L A+ V A+ G P ++ + G GH G+ I++
Sbjct: 232 LSIPISCP--LIGVIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 105 ATPSVSFPDDQLKALT-----G-RIQEAV------------SLKNGIEKN----LGLGKL 142
SF KA+T G R EA SL+N E L + L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPSPMLSISNL 344
Query: 143 SDFEKERQQFSPFIKTFASFFSPQK-------NGIEKNL---GLGK-LSDFEKELVKAAV 191
+ ++Q ++ S K NG KNL G + L L KA
Sbjct: 345 T-----QEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 192 P 192
P
Sbjct: 399 P 399
Score = 45.8 bits (108), Expect = 5e-06
Identities = 39/197 (19%), Positives = 58/197 (29%), Gaps = 78/197 (39%)
Query: 40 TVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGGHAGITI- 98
T A +V +A + +G + LDIV NP ++ + GG G I
Sbjct: 1638 TSKAAQDVWNRADNH-FKDTYGFSILDIVIN----------NPVNLTI-HFGGEKGKRIR 1685
Query: 99 ---------------------IPLISQATPSVSF--PDDQLKALTGRIQEAVSLKNGIEK 135
I++ + S +F L T Q A++L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTL------ 1738
Query: 136 NLGLGKLSDFEKERQQFSPFIKTFA--SFFSPQKNGIEKNLG----L----GKLSDFEK- 184
+ D + + P TFA S LG L +S E
Sbjct: 1739 -MEKAAFEDLKSK--GLIPADATFAGHS------------LGEYAALASLADVMS-IESL 1782
Query: 185 -ELVKA-------AVPE 193
E+V AVP
Sbjct: 1783 VEVVFYRGMTMQVAVPR 1799
Score = 37.0 bits (85), Expect = 0.003
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 31/96 (32%)
Query: 2 TRD--DLFNTNASIVRDIIKAVAEVAPKALIGIISNPVN---STVPIAAEVLKKAGVFDP 56
T D DL + SI I+ II PV +T A +L F P
Sbjct: 462 TFDGSDLRVLSGSISERIVDC-----------IIRLPVKWETTTQFKATHIL----DFGP 506
Query: 57 RRLFGVTTLDIVRANTFVAEAKGLNPTDVNVPVIGG 92
G+ L N + G V V ++ G
Sbjct: 507 GGASGLGVL--THRNK---DGTG-----VRV-IVAG 531
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 33.7 bits (76), Expect = 0.034
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 14 VRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIVRANTF 73
DI + + +++PKA +NP+ ++ + P + G
Sbjct: 132 FVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVGFC--HGHYGVME 182
Query: 74 VAEAKGLNPTDVNVPVIG 91
+ E GL V+ V G
Sbjct: 183 IVEKLGLEEEKVDWQVAG 200
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 29.7 bits (66), Expect = 0.80
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 8 NTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGV----- 62
I +I +A+ + AP++ + +NP++ VL K + G
Sbjct: 120 LRAVPIFAEIARAIRDYAPESWVINYTNPMSVCT----RVLYKVFPGI--KAIGCCHEVF 173
Query: 63 -TTLDIVRANTFVAEAKGLNPTDVNVPVIGGH 93
T + T + D+ V V+G +
Sbjct: 174 GTQKLLAEMVTERLGIEVPRREDIRVNVLGIN 205
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 28.7 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 4 DDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPI--AAEVLKKAGVFD 55
+ FNT S V +I+ V E+ P A++ I ST+P+ ++ ++ G+ +
Sbjct: 125 TNYFNT--STVEAVIRDVTEINPNAVMII-----KSTIPVGFTRDIKERLGIDN 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.3
Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 17/61 (27%)
Query: 144 DFEKERQQFSPFIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 203
DFE Q+ K S F F V ++ K+I EE
Sbjct: 8 DFETGEHQYQ--YKDILSVFED---------------AFVDNFDCKDVQDMPKSILSKEE 50
Query: 204 F 204
Sbjct: 51 I 51
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery
vehicle, blood substitute, oxygen storage/transport
complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2
a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A*
1o1l_A* 1o1n_A* 1o1m_A*
Length = 283
Score = 27.6 bits (60), Expect = 3.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
LS +K VKAA ++ + + G E + +
Sbjct: 2 LSPADKTNVKAAWGKVGAHAGEYGAEALER 31
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 27.5 bits (62), Expect = 3.2
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 114 DQLKALTGRIQEAVSLKNGIEKNLGLGKLSDFEKERQQFSPFIKTFASFFSPQKNGIEKN 173
+L+AL R +E +L + + +E Q S + F + Q++ IE
Sbjct: 7 AKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQED-IETA 65
Query: 174 LGLGKLSDFE-KELVKAAVPELKKNIAKGEE 203
+ L D E +E+ + + E K+ + E+
Sbjct: 66 QMM--LDDPEMREMAQDELREAKEKSEQLEQ 94
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding
domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation;
3.10A {Homo sapiens} PDB: 2l30_A
Length = 223
Score = 27.1 bits (59), Expect = 3.3
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 155 FIKTFASFFSPQKNGIEKNLGLGKLSDFEKELVKAAVPEL 194
F+K + + G L+ +KE +K +P +
Sbjct: 184 FVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGV 223
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant
tortoise, geochelone gigantea, oxygen storage/transport
complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP:
a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Length = 141
Score = 27.0 bits (59), Expect = 3.3
Identities = 5/30 (16%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
L++ +K+L++ ++ ++ G E + +
Sbjct: 2 LTEDDKQLIQHVWEKVLEHQEDFGAEALER 31
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 27.5 bits (62), Expect = 3.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 4 DDLFNTNASIVRDIIKAVAEVAPKALIGIISNPVNSTVPI--AAEVLKKAGVFD 55
+ F+T V +IK V V A + I ST+PI E+ +K
Sbjct: 89 INYFDT--QHVETVIKEVLSVNSHATLII-----KSTIPIGFITEMRQKFQTDR 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.7
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 115 QLKALTGRIQ-------EAVSLKNGIE 134
LK L ++ A+++K +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation,
phosphoprotein, packing defects, disease mutation,
distal site point mutation; HET: HEM SO4; 1.07A {Homo
sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A*
1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A*
3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A*
1b86_A* ...
Length = 141
Score = 26.6 bits (58), Expect = 3.8
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
LS +K VKAA ++ + + G E +
Sbjct: 2 LSPADKTNVKAAWGKVGAHAGEYGAEAYER 31
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 27.1 bits (61), Expect = 4.2
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 18/98 (18%)
Query: 114 DQLKALTGRIQEAVSLKNGIEKNLG-------LGKLSDFEKERQQFSPFIKTFASFFSPQ 166
D+L L +E +E L G+ + + I +
Sbjct: 3 DKLDRLEEEYRE-------LEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVL 55
Query: 167 KNGIEKNLGLGKLSDFE-KELVKAAVPELKKNIAKGEE 203
++ +E+ L L D E KE+ KA L E+
Sbjct: 56 ED-LEQAESL--LDDPELKEMAKAEREALLARKEALEK 90
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron,
metal-binding, oxygen transport, transport, oxygen
binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A*
3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A*
3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Length = 141
Score = 26.7 bits (58), Expect = 4.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
LS +K VKA ++ G E + +
Sbjct: 2 LSANDKSNVKAVFAKIGGQAGDLGGEALER 31
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation,
structural genomics, protein structure initiative, PSI,
CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2
PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Length = 143
Score = 26.3 bits (57), Expect = 4.8
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
LS +K+ VKA ++ + G + +++
Sbjct: 3 LSSKDKDTVKALWGKIADKAEEIGSDALSR 32
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine
dinucleotide, iron-sulfur, metal-binding, molybdopterin;
HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A*
2vpw_A* 2vpy_A*
Length = 765
Score = 26.9 bits (60), Expect = 5.3
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 9/37 (24%)
Query: 29 LIGIISNPVNSTVPIAAEVLKKA---G----VFDPRR 58
LIG + T + A G V DPR
Sbjct: 205 LIG--HHIGEDTHNTQLQDFALALKNGAKVVVVDPRF 239
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport
complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Length = 142
Score = 26.2 bits (57), Expect = 5.5
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
L+ E+ ++ + ++ G E + +
Sbjct: 3 LTKTERTIIVSMWAKISTQADTIGTETLER 32
>3up9_A Putative uncharacterized protein; membrane lipoprotein,
L-methionine binding protein, NLPA LIP structural
genomics; HET: PG4 PE4; 2.35A {Actinomyces
odontolyticus}
Length = 245
Score = 26.4 bits (59), Expect = 6.2
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 18 IKAVAEVAPKALIGIISNPVNSTVPIAAEVLKKAGVFDPRRLFGVTTLDIV 68
K++ E+ IGIIS+ N + A E+L G+ G ++ V
Sbjct: 97 HKSLDELPDGGTIGIISDTANQSR--ALELLATQGLVSIPEGDGDVNINTV 145
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET:
HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Length = 150
Score = 26.0 bits (57), Expect = 6.2
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEFVAK 207
S+ K ++ + L +I G ++
Sbjct: 11 GSEAIKANLRRSWGVLSADIEATGLMLMSN 40
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina
arenicola} SCOP: a.1.1.2
Length = 159
Score = 25.9 bits (57), Expect = 7.5
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 177 GKLSDFEKELVKAAVPELKKNIAK-GEEF 204
G L+ EK+L+++ +L + +
Sbjct: 11 GDLTPAEKDLIRSTWDQLMTHRTGFVADV 39
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 25.7 bits (57), Expect = 7.7
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 15 RDIIKAVAE-VAPKALIGII-SNPV----NSTVPIAAEVLKKAG------VFDPRRLFG- 61
RDI++AVA+ + I ++P+ V +AAE +++ V L G
Sbjct: 57 RDILRAVAQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGV 116
Query: 62 VTTLDIVRA 70
++ D+
Sbjct: 117 LSIRDLCFE 125
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 25.6 bits (56), Expect = 8.7
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEF 204
L+ +K++V+ +L +N +
Sbjct: 13 LTLAQKKIVRKTWHQLMRNKTSFVTDV 39
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin,
barley, ligand binding, non- symbiotic, symbiotic,
evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB:
2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Length = 162
Score = 25.7 bits (56), Expect = 9.5
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 179 LSDFEKELVKAAVPELKKNIAK-GEEF 204
S+ ++ LV + +KK+ A G F
Sbjct: 10 FSEEKEALVLKSWAIMKKDSANLGLRF 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.369
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,230,170
Number of extensions: 204343
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 103
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)