Query psy9934
Match_columns 158
No_of_seqs 219 out of 1815
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:23:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_F Small nuclear ribonucle 99.9 2.5E-27 8.5E-32 162.9 7.0 84 75-158 3-86 (86)
2 3s6n_F Small nuclear ribonucle 99.9 2.5E-24 8.7E-29 147.8 6.4 77 1-79 1-77 (86)
3 4emk_B U6 snRNA-associated SM- 99.9 9.6E-24 3.3E-28 141.4 6.7 71 7-77 3-73 (75)
4 1mgq_A SM-like protein; LSM, R 99.9 1.3E-23 4.6E-28 143.2 7.0 76 1-76 6-83 (83)
5 1th7_A SnRNP-2, small nuclear 99.9 1.2E-23 4.2E-28 142.7 5.4 78 1-79 3-80 (81)
6 4emk_B U6 snRNA-associated SM- 99.9 1.1E-23 3.7E-28 141.1 4.7 73 77-149 3-75 (75)
7 1i4k_A Putative snRNP SM-like 99.9 3.6E-23 1.2E-27 139.0 6.8 74 77-150 3-76 (77)
8 1h64_1 SnRNP SM-like protein; 99.9 3.5E-23 1.2E-27 138.5 6.7 73 77-149 3-75 (75)
9 1n9r_A SMF, small nuclear ribo 99.9 9.5E-23 3.2E-27 141.9 9.0 75 74-148 17-92 (93)
10 1h64_1 SnRNP SM-like protein; 99.9 3.7E-23 1.3E-27 138.3 6.4 72 7-78 3-74 (75)
11 1ljo_A Archaeal SM-like protei 99.9 5.4E-23 1.9E-27 138.2 6.4 72 78-149 5-77 (77)
12 1d3b_A Protein (small nuclear 99.9 6.8E-23 2.3E-27 137.3 6.5 71 6-76 3-73 (75)
13 1i4k_A Putative snRNP SM-like 99.9 7.5E-23 2.6E-27 137.4 6.6 72 7-78 3-74 (77)
14 1i8f_A Putative snRNP SM-like 99.9 8.7E-23 3E-27 138.6 6.5 72 5-77 8-79 (81)
15 3s6n_G Small nuclear ribonucle 99.9 4.8E-23 1.7E-27 138.3 4.7 72 8-79 4-75 (76)
16 1ljo_A Archaeal SM-like protei 99.9 1.1E-22 3.7E-27 136.8 6.3 72 7-78 4-76 (77)
17 3s6n_G Small nuclear ribonucle 99.9 1.7E-22 5.8E-27 135.6 7.3 72 78-149 4-75 (76)
18 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.4E-22 4.7E-27 141.8 6.8 76 77-152 9-91 (96)
19 1d3b_A Protein (small nuclear 99.9 1.1E-22 3.6E-27 136.4 5.9 72 77-148 4-75 (75)
20 4emk_A U6 snRNA-associated SM- 99.9 1.4E-22 4.7E-27 141.3 6.3 74 77-150 19-93 (94)
21 1th7_A SnRNP-2, small nuclear 99.9 7.4E-23 2.5E-27 138.9 4.8 74 76-149 7-80 (81)
22 4emk_A U6 snRNA-associated SM- 99.9 2E-22 6.7E-27 140.5 6.8 73 5-77 17-90 (94)
23 1n9r_A SMF, small nuclear ribo 99.9 9.1E-23 3.1E-27 142.0 5.1 74 4-77 17-91 (93)
24 4emh_A Probable U6 snRNA-assoc 99.9 3.8E-22 1.3E-26 141.7 7.4 77 76-152 14-91 (105)
25 1mgq_A SM-like protein; LSM, R 99.9 5.1E-22 1.7E-26 135.4 7.8 71 76-146 13-83 (83)
26 1i8f_A Putative snRNP SM-like 99.9 2.7E-22 9.2E-27 136.1 6.3 73 76-149 9-81 (81)
27 1d3b_B Protein (small nuclear 99.9 5.7E-22 1.9E-26 137.1 8.0 77 76-152 2-88 (91)
28 4emg_A Probable U6 snRNA-assoc 99.9 9E-22 3.1E-26 136.9 6.9 76 1-76 1-90 (93)
29 4emh_A Probable U6 snRNA-assoc 99.9 4.6E-22 1.6E-26 141.2 5.4 74 5-78 13-87 (105)
30 1d3b_B Protein (small nuclear 99.8 5.4E-22 1.8E-26 137.2 4.0 74 6-79 2-85 (91)
31 3bw1_A SMX4 protein, U6 snRNA- 99.8 2.6E-21 8.8E-26 135.3 7.4 73 6-78 8-87 (96)
32 4emk_C U6 snRNA-associated SM- 99.8 3.4E-21 1.2E-25 138.4 8.0 76 78-153 23-105 (113)
33 1b34_A Protein (small nuclear 99.8 2.9E-21 9.8E-26 139.9 6.5 73 8-80 2-74 (119)
34 2fwk_A U6 snRNA-associated SM- 99.8 1.4E-21 4.9E-26 141.9 4.7 76 5-80 25-115 (121)
35 3s6n_E Small nuclear ribonucle 99.8 1E-21 3.6E-26 136.3 3.3 73 5-77 13-90 (92)
36 4emg_A Probable U6 snRNA-assoc 99.8 6.7E-21 2.3E-25 132.5 7.3 71 77-147 8-91 (93)
37 3s6n_E Small nuclear ribonucle 99.8 2E-21 6.9E-26 134.9 4.5 73 76-148 14-91 (92)
38 1b34_A Protein (small nuclear 99.8 3.2E-21 1.1E-25 139.7 5.7 71 79-149 3-73 (119)
39 2y9a_D Small nuclear ribonucle 99.8 5.8E-21 2E-25 139.5 6.9 73 6-78 3-75 (126)
40 2fwk_A U6 snRNA-associated SM- 99.8 4.4E-21 1.5E-25 139.4 4.5 78 75-152 25-117 (121)
41 2y9a_D Small nuclear ribonucle 99.8 1.9E-20 6.5E-25 136.8 6.5 75 77-151 4-78 (126)
42 4emk_C U6 snRNA-associated SM- 99.8 6.5E-20 2.2E-24 131.7 5.6 73 7-79 22-101 (113)
43 1b34_B Protein (small nuclear 99.8 1.3E-19 4.3E-24 131.1 5.3 75 77-151 26-116 (118)
44 1b34_B Protein (small nuclear 99.8 1.6E-19 5.4E-24 130.6 5.5 72 6-77 25-112 (118)
45 3pgw_B SM B; protein-RNA compl 99.8 4.5E-19 1.5E-23 140.5 7.4 73 77-149 3-85 (231)
46 3pgw_B SM B; protein-RNA compl 99.8 1.3E-18 4.5E-23 137.8 7.2 72 7-78 3-84 (231)
47 1m5q_A SMAP3, small nuclear ri 99.7 4E-19 1.4E-23 130.4 3.5 68 81-152 3-70 (130)
48 1m5q_A SMAP3, small nuclear ri 99.7 3.4E-18 1.2E-22 125.4 5.0 66 10-79 2-67 (130)
49 1y96_A Gemin6, SIP2, GEM-assoc 98.8 5.6E-09 1.9E-13 71.0 5.8 62 7-75 7-69 (86)
50 1y96_A Gemin6, SIP2, GEM-assoc 98.7 2.1E-08 7E-13 68.2 5.0 65 82-152 11-76 (86)
51 3sb2_A Protein HFQ; SM-like, R 97.1 0.00088 3E-08 44.6 5.5 68 1-81 1-70 (79)
52 2ylb_A Protein HFQ; RNA-bindin 97.0 0.0012 4.1E-08 43.4 4.8 43 5-48 6-50 (74)
53 1u1s_A HFQ protein; SM-like ba 96.9 0.0018 6.3E-08 43.2 5.4 41 6-47 5-47 (82)
54 2qtx_A Uncharacterized protein 96.9 0.0016 5.6E-08 42.4 4.8 29 17-45 24-52 (71)
55 3ahu_A Protein HFQ; SM-like mo 96.8 0.0015 5.3E-08 43.3 4.2 45 1-45 4-50 (78)
56 1kq1_A HFQ, HOST factor for Q 96.6 0.0033 1.1E-07 41.6 5.1 61 7-79 6-68 (77)
57 2y90_A Protein HFQ; RNA-bindin 96.6 0.002 6.9E-08 44.9 4.1 42 5-47 6-49 (104)
58 2qtx_A Uncharacterized protein 95.7 0.017 6E-07 37.5 4.9 35 82-116 17-53 (71)
59 2vxe_A CG10686-PA; EDC3, CAR-1 95.7 0.023 8E-07 38.3 5.7 62 15-76 10-81 (88)
60 1kq1_A HFQ, HOST factor for Q 95.6 0.0067 2.3E-07 40.1 2.6 36 82-117 11-48 (77)
61 2vc8_A Enhancer of mRNA-decapp 95.5 0.062 2.1E-06 35.8 7.0 59 14-75 5-65 (84)
62 1u1s_A HFQ protein; SM-like ba 95.3 0.017 5.9E-07 38.5 3.6 35 82-116 11-47 (82)
63 2ylb_A Protein HFQ; RNA-bindin 95.2 0.019 6.6E-07 37.5 3.6 36 81-116 12-49 (74)
64 4a53_A EDC3; RNA binding prote 95.0 0.041 1.4E-06 39.3 5.1 39 13-52 7-47 (125)
65 3sb2_A Protein HFQ; SM-like, R 94.9 0.025 8.5E-07 37.5 3.6 34 82-115 12-47 (79)
66 2y90_A Protein HFQ; RNA-bindin 94.9 0.012 4.1E-07 41.0 2.1 38 81-118 12-51 (104)
67 3ahu_A Protein HFQ; SM-like mo 94.8 0.039 1.3E-06 36.4 4.3 35 82-116 15-51 (78)
68 2fb7_A SM-like protein, LSM-14 94.6 0.029 9.9E-07 38.3 3.4 69 8-76 9-87 (95)
69 2fb7_A SM-like protein, LSM-14 94.3 0.17 5.7E-06 34.5 6.6 74 78-151 9-92 (95)
70 1y96_B Gemin7, SIP3, GEM-assoc 93.9 0.16 5.5E-06 33.9 5.8 60 10-74 21-81 (85)
71 2vxe_A CG10686-PA; EDC3, CAR-1 93.8 0.35 1.2E-05 32.5 7.4 65 85-149 10-84 (88)
72 1y96_B Gemin7, SIP3, GEM-assoc 92.3 0.21 7.1E-06 33.4 4.5 60 82-146 23-83 (85)
73 4a53_A EDC3; RNA binding prote 91.7 0.28 9.6E-06 35.0 4.9 59 83-151 7-66 (125)
74 3hfo_A SSR3341 protein; HFQ, S 91.5 0.32 1.1E-05 31.4 4.6 38 10-48 11-50 (70)
75 1ycy_A Conserved hypothetical 91.4 0.5 1.7E-05 29.9 5.2 41 11-52 9-49 (71)
76 3hfn_A ASL2047 protein; HFQ, S 90.4 0.77 2.6E-05 29.7 5.7 39 10-49 13-53 (72)
77 2vc8_A Enhancer of mRNA-decapp 90.0 1.2 4.3E-05 29.5 6.5 66 83-151 4-71 (84)
78 3hfo_A SSR3341 protein; HFQ, S 88.6 0.5 1.7E-05 30.4 3.7 29 88-116 21-49 (70)
79 2qqr_A JMJC domain-containing 88.0 1.1 3.8E-05 31.6 5.5 76 17-109 8-88 (118)
80 3hfn_A ASL2047 protein; HFQ, S 84.9 1.1 3.7E-05 29.0 3.8 48 88-146 23-70 (72)
81 1ib8_A Conserved protein SP14. 83.9 0.71 2.4E-05 34.2 3.0 40 2-41 85-131 (164)
82 1ycy_A Conserved hypothetical 76.8 5.3 0.00018 25.2 4.7 60 82-146 10-69 (71)
83 3rux_A BIRA bifunctional prote 74.1 3.9 0.00013 32.3 4.6 34 17-50 223-256 (270)
84 2xk0_A Polycomb protein PCL; t 72.5 6.3 0.00021 25.1 4.3 38 16-53 17-55 (69)
85 2xdp_A Lysine-specific demethy 71.4 1.1 3.8E-05 31.9 0.7 76 17-109 9-89 (123)
86 3rux_A BIRA bifunctional prote 70.7 4.7 0.00016 31.9 4.3 34 86-119 222-255 (270)
87 2rm4_A CG6311-PB, DM EDC3; enh 68.4 14 0.00049 25.0 5.6 58 14-74 8-67 (103)
88 4hcz_A PHD finger protein 1; p 68.1 6.4 0.00022 24.2 3.5 36 17-52 6-44 (58)
89 1ib8_A Conserved protein SP14. 67.8 3.5 0.00012 30.4 2.8 29 83-111 99-131 (164)
90 2eay_A Biotin [acetyl-COA-carb 63.4 5.6 0.00019 30.6 3.3 46 17-68 187-232 (233)
91 2eay_A Biotin [acetyl-COA-carb 62.3 5.9 0.0002 30.5 3.3 46 87-138 187-232 (233)
92 2ej9_A Putative biotin ligase; 60.5 21 0.00073 27.3 6.2 31 17-48 191-221 (237)
93 1bia_A BIRA bifunctional prote 60.1 16 0.00056 29.2 5.7 48 16-68 271-318 (321)
94 1sg5_A ORF, hypothetical prote 57.0 6.3 0.00022 26.1 2.2 36 1-36 1-43 (86)
95 2e12_A SM-like motif, hypothet 55.3 10 0.00036 25.4 3.1 27 10-36 18-46 (101)
96 1bia_A BIRA bifunctional prote 49.4 31 0.0011 27.5 5.7 48 86-138 271-318 (321)
97 2m0o_A PHD finger protein 1; t 47.0 8.1 0.00028 25.1 1.4 36 17-52 29-67 (79)
98 3by7_A Uncharacterized protein 45.9 59 0.002 22.0 5.8 57 92-150 7-78 (100)
99 4gop_A Putative uncharacterize 45.6 11 0.00039 25.9 2.2 32 1-40 1-32 (114)
100 3kdf_A Replication protein A 1 44.1 9.1 0.00031 26.8 1.5 31 1-39 5-35 (121)
101 2xk0_A Polycomb protein PCL; t 43.5 59 0.002 20.5 5.1 30 80-109 11-40 (69)
102 2ej9_A Putative biotin ligase; 40.6 32 0.0011 26.3 4.3 47 86-137 190-236 (237)
103 4hcz_A PHD finger protein 1; p 40.1 36 0.0012 20.8 3.6 24 88-111 7-30 (58)
104 2dxu_A Biotin--[acetyl-COA-car 37.9 22 0.00076 27.2 3.0 30 17-48 188-217 (235)
105 2eqj_A Metal-response element- 36.9 41 0.0014 21.1 3.5 26 86-111 15-40 (66)
106 2pi2_E Replication protein A 1 36.2 14 0.00048 26.6 1.5 31 1-39 26-56 (142)
107 2rm4_A CG6311-PB, DM EDC3; enh 36.1 99 0.0034 20.9 8.2 66 84-152 8-75 (103)
108 2dxu_A Biotin--[acetyl-COA-car 34.3 26 0.0009 26.8 2.9 31 87-119 188-218 (235)
109 3rkx_A Biotin-[acetyl-COA-carb 33.9 44 0.0015 26.8 4.2 32 16-48 277-308 (323)
110 2e5p_A Protein PHF1, PHD finge 33.6 54 0.0018 20.6 3.7 36 17-52 12-50 (68)
111 2eqj_A Metal-response element- 33.1 55 0.0019 20.5 3.7 24 17-40 16-39 (66)
112 1x4r_A PARP14 protein; WWE dom 30.4 4.5 0.00015 27.6 -1.9 19 102-120 34-52 (99)
113 3rkx_A Biotin-[acetyl-COA-carb 30.2 53 0.0018 26.3 4.2 32 86-118 277-308 (323)
114 2qqr_A JMJC domain-containing 29.4 65 0.0022 22.4 4.0 32 87-118 8-41 (118)
115 3bfm_A Biotin protein ligase-l 29.2 65 0.0022 24.4 4.3 29 16-49 192-220 (235)
116 2e5q_A PHD finger protein 19; 28.6 50 0.0017 20.5 2.8 36 17-52 10-48 (63)
117 4a8c_A Periplasmic PH-dependen 25.9 79 0.0027 26.2 4.6 31 19-49 88-118 (436)
118 1ky9_A Protease DO, DEGP, HTRA 25.1 77 0.0026 26.5 4.4 32 19-50 111-142 (448)
119 3bfm_A Biotin protein ligase-l 24.3 74 0.0025 24.0 3.9 28 87-119 193-220 (235)
120 1ky9_A Protease DO, DEGP, HTRA 22.0 89 0.003 26.1 4.2 32 89-120 111-142 (448)
121 2xzm_L 40S ribosomal protein S 21.9 26 0.00088 25.3 0.7 67 85-152 65-140 (142)
122 4a8c_A Periplasmic PH-dependen 21.7 87 0.003 25.9 4.1 32 89-120 88-119 (436)
123 3uby_A DNA-3-methyladenine gly 20.5 1.1E+02 0.0037 23.5 4.1 34 9-42 16-49 (219)
No 1
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.94 E-value=2.5e-27 Score=162.89 Aligned_cols=84 Identities=76% Similarity=1.229 Sum_probs=70.9
Q ss_pred CCCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCCccc
Q psy9934 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDEEG 154 (158)
Q Consensus 75 ~p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~~~~ 154 (158)
.|..|.++|+++++++|.|+|++|++|+|+|.|||+|||++|+||+|+.+++..+++|.++|||+||++|+++|++++.+
T Consensus 3 ~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~~~~ 82 (86)
T 3s6n_F 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDG 82 (86)
T ss_dssp CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC------
T ss_pred cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcccccc
Confidence 36789999999999999999999999999999999999999999999988877789999999999999999999999999
Q ss_pred cccC
Q psy9934 155 EMRE 158 (158)
Q Consensus 155 ~~~~ 158 (158)
||||
T Consensus 83 ~~~~ 86 (86)
T 3s6n_F 83 EMRE 86 (86)
T ss_dssp ----
T ss_pred cccC
Confidence 9997
No 2
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=2.5e-24 Score=147.85 Aligned_cols=77 Identities=65% Similarity=0.944 Sum_probs=69.6
Q ss_pred CCCCCCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCC
Q psy9934 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
|| +|..|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+|+.+++..+.+|.++|||++|.++.+.+.
T Consensus 1 ms--~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 1 MS--LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp ----CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC-
T ss_pred CC--cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCc
Confidence 77 589999999999999999999999999999999999999999999998877667899999999999999886553
No 3
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.89 E-value=9.6e-24 Score=141.35 Aligned_cols=71 Identities=39% Similarity=0.619 Sum_probs=67.0
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPC 77 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~ 77 (158)
..|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+|+.+++..+++|.++|||++|.++.+.
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~ 73 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSAL 73 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEec
Confidence 68999999999999999999999999999999999999999999998776778999999999999998754
No 4
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.89 E-value=1.3e-23 Score=143.22 Aligned_cols=76 Identities=37% Similarity=0.412 Sum_probs=67.9
Q ss_pred CCCC--CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCC
Q psy9934 1 MSTP--LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLP 76 (158)
Q Consensus 1 m~~~--~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p 76 (158)
||+. .+..|+++|.+++|++|+|+|+||++|.|+|.+||+|||++|+||+|++.++..+.+|.++|||++|.++.|
T Consensus 6 ms~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 6 VSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp ----CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred cccccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 5544 688999999999999999999999999999999999999999999999877678899999999999998754
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.88 E-value=1.2e-23 Score=142.72 Aligned_cols=78 Identities=31% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCCCCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCC
Q psy9934 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
||+ .+..|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+|++.+...+.+|.++|||++|.++.+.++
T Consensus 3 m~~-~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 3 MNF-LAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CCT-TCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccc-cccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 454 467899999999999999999999999999999999999999999999777678899999999999999876553
No 6
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.88 E-value=1.1e-23 Score=141.11 Aligned_cols=73 Identities=44% Similarity=0.773 Sum_probs=67.9
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
..|.++|+++++++|.|+|+||++|+|+|.|||+|||++|+||+|+.+++..+++|.++|||+||++|++.|+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecCC
Confidence 4688999999999999999999999999999999999999999999888878899999999999999999864
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.88 E-value=3.6e-23 Score=138.97 Aligned_cols=74 Identities=35% Similarity=0.501 Sum_probs=68.7
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEG 150 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~ 150 (158)
..|.++|+++++++|.|+|++|++|+|+|.|||+|||++|+||+|+..+...+++|.++|||+||++|+++++.
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 36888999999999999999999999999999999999999999998887788999999999999999999875
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.88 E-value=3.5e-23 Score=138.48 Aligned_cols=73 Identities=34% Similarity=0.493 Sum_probs=67.7
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
..|.++|.++++++|.|+|+||++|+|+|.|||+|||++|+||+|+..+...+++|.++|||+||++|+++++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 3688899999999999999999999999999999999999999999888778899999999999999999874
No 9
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=9.5e-23 Score=141.89 Aligned_cols=75 Identities=53% Similarity=0.877 Sum_probs=63.8
Q ss_pred CCCCCCCCcccccccceeeEeeccc-cEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCC
Q psy9934 74 PLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 148 (158)
Q Consensus 74 I~p~dP~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~ 148 (158)
..+..|.++|+++++++|.|+|++| ++|+|+|.|||+|||++|+||+|+.+++..+++|.++|||+||++|.+++
T Consensus 17 ~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 17 MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ---------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred cccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 4467899999999999999999999 99999999999999999999999988888889999999999999999876
No 10
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.88 E-value=3.7e-23 Score=138.33 Aligned_cols=72 Identities=29% Similarity=0.414 Sum_probs=66.8
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
..|+++|++++|++|+|+|+||++|.|+|.|||+|||++|+||+|++.+...+.+|.++|||++|.++.+.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCC
Confidence 489999999999999999999999999999999999999999999977766889999999999999987543
No 11
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.88 E-value=5.4e-23 Score=138.23 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=67.3
Q ss_pred CCCCcccccccceeeEeeccc-cEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 78 NPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 78 dP~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
.|.++|.++++++|.|+|++| ++|+|+|.|||+|||++|+||+|+..++..+++|.++|||+||++|+++|+
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 578899999999999999999 999999999999999999999999888888899999999999999999875
No 12
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.88 E-value=6.8e-23 Score=137.29 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=64.8
Q ss_pred CCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCC
Q psy9934 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLP 76 (158)
Q Consensus 6 ~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p 76 (158)
...|++||+++.|++|+|+|++|++|+|+|.+||+|||++|+||+|+..+...+++|.++|||++|.++..
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~l 73 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLIL 73 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEE
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEc
Confidence 46899999999999999999999999999999999999999999999644457899999999999998764
No 13
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.87 E-value=7.5e-23 Score=137.43 Aligned_cols=72 Identities=36% Similarity=0.427 Sum_probs=67.3
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
..|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+|++.+...+.+|.++|||++|.++.+.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCC
Confidence 479999999999999999999999999999999999999999999987766889999999999999987644
No 14
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.87 E-value=8.7e-23 Score=138.55 Aligned_cols=72 Identities=31% Similarity=0.280 Sum_probs=66.1
Q ss_pred CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCC
Q psy9934 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPC 77 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~ 77 (158)
.+..|+++|.++++++|+|+|+||++|.|+|.+||+|||++|+||+|+ +++..+.+|.++|||++|.++.+.
T Consensus 8 ~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~ 79 (81)
T 1i8f_A 8 CFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPV 79 (81)
T ss_dssp --CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEEC
T ss_pred cccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeC
Confidence 468999999999999999999999999999999999999999999999 666688999999999999988754
No 15
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.87 E-value=4.8e-23 Score=138.29 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=53.1
Q ss_pred CchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCC
Q psy9934 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 8 ~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
.|.++|++++|++|+|+|+||++|.|+|.|||+|||++|+||+|+..++..+.+|.++|||++|.++.|.++
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 377999999999999999999999999999999999999999999665567899999999999999987664
No 16
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.87 E-value=1.1e-22 Score=136.77 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=66.8
Q ss_pred CCchHHHhhcCCCEEEEEEeCC-cEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
..|+++|.++++++|+|+|+|| ++|.|+|.|||+|||++|+||+|+..++..+.+|.++|||++|.++.+.+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCC
Confidence 4799999999999999999999 99999999999999999999999987767889999999999999987643
No 17
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.87 E-value=1.7e-22 Score=135.62 Aligned_cols=72 Identities=28% Similarity=0.391 Sum_probs=53.7
Q ss_pred CCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 78 dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
.+.++|+++++++|.|+|+||++|+|+|.|||+|||++|+||+|+..+...+.+|.++|||+||++|++.|.
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 356899999999999999999999999999999999999999998766667899999999999999999874
No 18
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-22 Score=141.77 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=66.3
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEec-------CeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-------GHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-------~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
..|.++|.++++++|.|+|++||+|.|+|.|||+||||+|+||+|+.. +...+.+|.++|||+||++|+++++
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 357889999999999999999999999999999999999999999853 3456789999999999999999998
Q ss_pred CCc
Q psy9934 150 GDE 152 (158)
Q Consensus 150 ~~~ 152 (158)
+++
T Consensus 89 ~~d 91 (96)
T 3bw1_A 89 DDD 91 (96)
T ss_dssp ---
T ss_pred ccc
Confidence 865
No 19
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.87 E-value=1.1e-22 Score=136.38 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=66.8
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAE 148 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~ 148 (158)
..|.++|+++.+++|.|+|++|++|+|+|.|||+|||++|+||+|+..+...+++|.++|||+||.+|..||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 368889999999999999999999999999999999999999999965545789999999999999999986
No 20
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=1.4e-22 Score=141.26 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=66.9
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEe-cCeeeeecCcEEEeeCcEEEEEeCCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAEEG 150 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~~g~~~iRG~~I~~i~~~~~~ 150 (158)
..|.++|.++++++|+|+|++|++|+|+|.|||+||||+|+||+|+. +++..+++|.++|||+||++|++..+.
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~~p 93 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGGKP 93 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC--
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCCCC
Confidence 46788999999999999999999999999999999999999999997 666678999999999999999987553
No 21
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.87 E-value=7.4e-23 Score=138.86 Aligned_cols=74 Identities=31% Similarity=0.384 Sum_probs=68.2
Q ss_pred CCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
+..|.++|.++++++|.|+|+||++|+|+|.|||+|||++|+||+|+..+...+++|.++|||++|++|+++++
T Consensus 7 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 7 AETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 45788999999999999999999999999999999999999999999877777899999999999999999875
No 22
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=2e-22 Score=140.50 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEE-eccceecceeEEEEecCCCCCCCC
Q psy9934 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRSLTMSTPLPC 77 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lg~~~iRG~~i~~I~p~ 77 (158)
....|+++|.++++++|+|+|++|++|.|+|.|||+||||+|+||+|+. +++..+.+|.++|||++|.++.|.
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 4678999999999999999999999999999999999999999999997 666688999999999999998864
No 23
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.87 E-value=9.1e-23 Score=141.98 Aligned_cols=74 Identities=45% Similarity=0.657 Sum_probs=61.3
Q ss_pred CCCCCchHHHhhcCCCEEEEEEeCC-cEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCC
Q psy9934 4 PLPCNPKPFLNLLTGKSVICKLKWG-HEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPC 77 (158)
Q Consensus 4 ~~~~~p~~~L~~~~~k~V~V~l~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~ 77 (158)
..+..|+++|++++|++|+|+|+|| ++|.|+|.+||+|||++|+||+|+++++..+.+|.++|||++|.++.+.
T Consensus 17 ~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~ 91 (93)
T 1n9r_A 17 MQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIREL 91 (93)
T ss_dssp ---------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEEC
T ss_pred cccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeC
Confidence 3678999999999999999999999 9999999999999999999999998776778999999999999987643
No 24
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.8e-22 Score=141.65 Aligned_cols=77 Identities=35% Similarity=0.501 Sum_probs=55.9
Q ss_pred CCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEe-cCeeeeecCcEEEeeCcEEEEEeCCCCCc
Q psy9934 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAEEGDE 152 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~~g~~~iRG~~I~~i~~~~~~~~ 152 (158)
|-.|.++|+++++++|.|+|++|++|+|+|.|||+||||+|+||+|+. +|+..+++|.++|||+||++|.++|+..+
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d 91 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLS 91 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC------
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhh
Confidence 567899999999999999999999999999999999999999999984 56567899999999999999999998764
No 25
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=5.1e-22 Score=135.37 Aligned_cols=71 Identities=42% Similarity=0.526 Sum_probs=67.7
Q ss_pred CCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEe
Q psy9934 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 146 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~ 146 (158)
+..|.++|.++++++|.|+|+||++|+|+|.|||+|||++|+||+|+..+...+.+|.++|||+||++|+|
T Consensus 13 ~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 13 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred CcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 56889999999999999999999999999999999999999999999888788899999999999999975
No 26
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.86 E-value=2.7e-22 Score=136.12 Aligned_cols=73 Identities=33% Similarity=0.363 Sum_probs=67.3
Q ss_pred CCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
+..|.++|.++++++|.|+|++|++|+|+|.|||+|||++|+||+|+ ++...+.+|.++|||+||++|+++++
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~dg 81 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVPG 81 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC-
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCCC
Confidence 45788999999999999999999999999999999999999999999 66677899999999999999999874
No 27
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.86 E-value=5.7e-22 Score=137.11 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEe----------cCeeeeecCcEEEeeCcEEEEE
Q psy9934 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----------DGHCTGKLGEVLIRCNNILYIR 145 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~----------~~~~~~~~g~~~iRG~~I~~i~ 145 (158)
+.+|.++|.++++++|.|+|++||+|.|+|.|||+||||+|+||+|+. .+...+.+|.++|||+||++|+
T Consensus 2 ~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~ 81 (91)
T 1d3b_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (91)
T ss_dssp -----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEE
T ss_pred CCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEE
Confidence 457889999999999999999999999999999999999999999964 2345688999999999999999
Q ss_pred eCCCCCc
Q psy9934 146 GAEEGDE 152 (158)
Q Consensus 146 ~~~~~~~ 152 (158)
+++...+
T Consensus 82 ~~~~~~~ 88 (91)
T 1d3b_B 82 VEGPPPK 88 (91)
T ss_dssp EEECCC-
T ss_pred cCCCCCC
Confidence 9887654
No 28
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.85 E-value=9e-22 Score=136.93 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=63.6
Q ss_pred CCCC-CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEe-----c--------cceecceeEEE
Q psy9934 1 MSTP-LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-----G--------HCTGKLGEVLI 66 (158)
Q Consensus 1 m~~~-~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-----~--------~~~~~lg~~~i 66 (158)
||+. +...|+++|+.++|++|+|+|+||++|.|+|.|||+||||+|+||+|++. + +..+.+|.++|
T Consensus 1 m~~~~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~i 80 (93)
T 4emg_A 1 MESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFV 80 (93)
T ss_dssp --------CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEE
T ss_pred CCcccccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEE
Confidence 5543 56899999999999999999999999999999999999999999999964 2 13688999999
Q ss_pred EecCCCCCCC
Q psy9934 67 RSLTMSTPLP 76 (158)
Q Consensus 67 RG~~i~~I~p 76 (158)
||++|.++.|
T Consensus 81 RG~nVv~I~p 90 (93)
T 4emg_A 81 RGDSVILIAP 90 (93)
T ss_dssp CGGGEEEEEC
T ss_pred CCCeEEEEEe
Confidence 9999999876
No 29
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.85 E-value=4.6e-22 Score=141.20 Aligned_cols=74 Identities=28% Similarity=0.387 Sum_probs=55.1
Q ss_pred CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEE-eccceecceeEEEEecCCCCCCCCC
Q psy9934 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
.|-+|++||++++|++|+|+|+||++|.|+|.+||.|||++|+||+|+. +++..+.+|.++|||++|.++.+++
T Consensus 13 ~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 13 DPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp -------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC--
T ss_pred CCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCH
Confidence 5778999999999999999999999999999999999999999999984 5555789999999999999988644
No 30
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.84 E-value=5.4e-22 Score=137.23 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=62.2
Q ss_pred CCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEE----------eccceecceeEEEEecCCCCCC
Q psy9934 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII----------DGHCTGKLGEVLIRSLTMSTPL 75 (158)
Q Consensus 6 ~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~----------~~~~~~~lg~~~iRG~~i~~I~ 75 (158)
+.+|.++|.+++|++|+|+|+|||+|.|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|.++.
T Consensus 2 ~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~ 81 (91)
T 1d3b_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (91)
T ss_dssp -----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEE
T ss_pred CCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEE
Confidence 467899999999999999999999999999999999999999999974 2334688999999999999987
Q ss_pred CCCC
Q psy9934 76 PCNP 79 (158)
Q Consensus 76 p~dP 79 (158)
+..|
T Consensus 82 ~~~~ 85 (91)
T 1d3b_B 82 VEGP 85 (91)
T ss_dssp EEEC
T ss_pred cCCC
Confidence 6444
No 31
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.6e-21 Score=135.30 Aligned_cols=73 Identities=23% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEe-------ccceecceeEEEEecCCCCCCCCC
Q psy9934 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-------GHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 6 ~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-------~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
-..|+++|++++|++|+|+|+|||+|.|+|.|||+|||++|+||+|++. ++..+.+|.++|||++|.++.+.+
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecC
Confidence 3679999999999999999999999999999999999999999999964 234678999999999999988654
No 32
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.84 E-value=3.4e-21 Score=138.39 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecC-------eeeeecCcEEEeeCcEEEEEeCCCC
Q psy9934 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-------HCTGKLGEVLIRCNNILYIRGAEEG 150 (158)
Q Consensus 78 dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-------~~~~~~g~~~iRG~~I~~i~~~~~~ 150 (158)
.|...|.++++++|.|+|++||+|.|+|.|||+||||+|+||+|+..+ ...+.+|.++|||+||++|+++|+.
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 455678999999999999999999999999999999999999998643 3468999999999999999999988
Q ss_pred Ccc
Q psy9934 151 DEE 153 (158)
Q Consensus 151 ~~~ 153 (158)
+|+
T Consensus 103 ee~ 105 (113)
T 4emk_C 103 EEI 105 (113)
T ss_dssp ---
T ss_pred ccc
Confidence 864
No 33
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.84 E-value=2.9e-21 Score=139.94 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=67.2
Q ss_pred CchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCCC
Q psy9934 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNPK 80 (158)
Q Consensus 8 ~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP~ 80 (158)
.|++||+++++++|+|+|+||++|.|+|.+||+|||++|+||+|+..+.....++.+||||++|.++.+++..
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEecccc
Confidence 5999999999999999999999999999999999999999999996555578999999999999999876553
No 34
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.83 E-value=1.4e-21 Score=141.92 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=67.0
Q ss_pred CCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEe----------ccc-----eecceeEEEEec
Q psy9934 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHC-----TGKLGEVLIRSL 69 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~-----~~~lg~~~iRG~ 69 (158)
....|+++|.++++++|+|+|+|||+|.|+|.|||+||||+|+||+|++. ++. .+.+|.++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 56799999999999999999999999999999999999999999999862 323 678999999999
Q ss_pred CCCCCCCCCCC
Q psy9934 70 TMSTPLPCNPK 80 (158)
Q Consensus 70 ~i~~I~p~dP~ 80 (158)
+|.++.+..|.
T Consensus 105 nVv~I~~~~~~ 115 (121)
T 2fwk_A 105 NVAMLVPGGDP 115 (121)
T ss_dssp GEEEEESSSCC
T ss_pred EEEEEEecCCC
Confidence 99998875543
No 35
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.83 E-value=1e-21 Score=136.34 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCCchHHHhhcCCCEEEEEE----eCCcEEEEEEeEecCcceeEEceeeEEE-eccceecceeEEEEecCCCCCCCC
Q psy9934 5 LPCNPKPFLNLLTGKSVICKL----KWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRSLTMSTPLPC 77 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k~V~V~l----~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lg~~~iRG~~i~~I~p~ 77 (158)
....|+++|.++++++|+|++ ++|++|.|+|.|||+|||++|+||+|+. +++..+.+|.++|||++|.++.|.
T Consensus 13 ~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~ 90 (92)
T 3s6n_E 13 VMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90 (92)
T ss_dssp -CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC
T ss_pred eccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeC
Confidence 377899999999999999999 9999999999999999999999999995 455678999999999999998754
No 36
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.83 E-value=6.7e-21 Score=132.49 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=64.1
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEec-----C--------eeeeecCcEEEeeCcEEE
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-----G--------HCTGKLGEVLIRCNNILY 143 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-----~--------~~~~~~g~~~iRG~~I~~ 143 (158)
..|.++|+.+++++|.|+|++|++|+|+|.|||+||||+|+||+|+.. + ...+.+|.++|||+||++
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 468899999999999999999999999999999999999999999864 3 236889999999999999
Q ss_pred EEeC
Q psy9934 144 IRGA 147 (158)
Q Consensus 144 i~~~ 147 (158)
|+++
T Consensus 88 I~p~ 91 (93)
T 4emg_A 88 IAPP 91 (93)
T ss_dssp EECC
T ss_pred EEec
Confidence 9985
No 37
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.83 E-value=2e-21 Score=134.89 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=66.6
Q ss_pred CCCCCCcccccccceeeEee----ccccEEEEEEEEeccccceeecceEEEe-cCeeeeecCcEEEeeCcEEEEEeCC
Q psy9934 76 PCNPKPFLNLLTGKSVICKL----KWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIRCNNILYIRGAE 148 (158)
Q Consensus 76 p~dP~~~L~~~~~k~V~V~L----~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~~g~~~iRG~~I~~i~~~~ 148 (158)
+..|.++|.+++++++.|++ ++|++|+|+|.|||+||||+|+||+|+. +++..+++|.++|||+||++|++.+
T Consensus 14 m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred ccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 45788999999999999998 9999999999999999999999999986 4556789999999999999999875
No 38
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.83 E-value=3.2e-21 Score=139.69 Aligned_cols=71 Identities=27% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCC
Q psy9934 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 79 P~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
|.++|+++++++|.|+|++|++|+|+|.+||+||||+|+||+|+..+....++|.+||||+||++|.++|+
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTT
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccc
Confidence 66789999999999999999999999999999999999999999776667899999999999999999987
No 39
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.83 E-value=5.8e-21 Score=139.52 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=65.9
Q ss_pred CCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCC
Q psy9934 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 6 ~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
...|++||++++|++|+|+|+||++|+|+|.+||.|||++|+||+|+..+....+++.+||||++|.++.+++
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCS
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccc
Confidence 4689999999999999999999999999999999999999999999853334789999999999999987544
No 40
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.82 E-value=4.4e-21 Score=139.35 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCCCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEec----------Cee-----eeecCcEEEeeC
Q psy9934 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHC-----TGKLGEVLIRCN 139 (158)
Q Consensus 75 ~p~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~-----~~~~g~~~iRG~ 139 (158)
....|..+|.++++++|+|+|++||+|+|+|.|||+||||+|+||+|+.. |.. .+.+|.++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 34578899999999999999999999999999999999999999999862 323 678999999999
Q ss_pred cEEEEEeCCCCCc
Q psy9934 140 NILYIRGAEEGDE 152 (158)
Q Consensus 140 ~I~~i~~~~~~~~ 152 (158)
+|++|++.++..+
T Consensus 105 nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 105 NVAMLVPGGDPDS 117 (121)
T ss_dssp GEEEEESSSCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999888764
No 41
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.81 E-value=1.9e-20 Score=136.78 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=68.0
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCC
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 151 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~ 151 (158)
..|.++|+++++++|.|+|++|++|+|+|.+||+|||++|+||+|+..+.+..+++.+||||+||.||.++|.-.
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~ 78 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLK 78 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEcccccc
Confidence 368899999999999999999999999999999999999999999864434689999999999999999887654
No 42
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.79 E-value=6.5e-20 Score=131.70 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEec-------cceecceeEEEEecCCCCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDG-------HCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-------~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
..|...|.++++++|+|+|+|||+|.|+|.|||.||||+|+||+|++.. ...+.+|.++|||++|.++.+.+.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 4678899999999999999999999999999999999999999999542 347899999999999999887653
No 43
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.78 E-value=1.3e-19 Score=131.07 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=63.9
Q ss_pred CCCCCcccccc--cceeeEeeccccEEEEEEEEeccccceeecceEEEecCe--------------eeeecCcEEEeeCc
Q psy9934 77 CNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGH--------------CTGKLGEVLIRCNN 140 (158)
Q Consensus 77 ~dP~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~--------------~~~~~g~~~iRG~~ 140 (158)
..|..+|..++ +++|.|+|++|++|.|+|.|||+||||+|+||+|+.... ..+.+|.+||||+|
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 46788999998 599999999999999999999999999999999985221 13569999999999
Q ss_pred EEEEEeCCCCC
Q psy9934 141 ILYIRGAEEGD 151 (158)
Q Consensus 141 I~~i~~~~~~~ 151 (158)
|++|++++...
T Consensus 106 Vv~I~~~~~~~ 116 (118)
T 1b34_B 106 VIVVLRNPLIA 116 (118)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEeCchhh
Confidence 99999987643
No 44
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.78 E-value=1.6e-19 Score=130.58 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred CCCchHHHhhcC--CCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEecc--------------ceecceeEEEEec
Q psy9934 6 PCNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGH--------------CTGKLGEVLIRSL 69 (158)
Q Consensus 6 ~~~p~~~L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~--------------~~~~lg~~~iRG~ 69 (158)
...|+++|..++ +++|.|+|+||++|.|+|.|||+||||+|+||+|++... ..+.+|.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 468999999999 599999999999999999999999999999999985221 1346999999999
Q ss_pred CCCCCCCC
Q psy9934 70 TMSTPLPC 77 (158)
Q Consensus 70 ~i~~I~p~ 77 (158)
+|.++.+.
T Consensus 105 nVv~I~~~ 112 (118)
T 1b34_B 105 SVIVVLRN 112 (118)
T ss_dssp GEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998754
No 45
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.77 E-value=4.5e-19 Score=140.46 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=65.5
Q ss_pred CCCCCcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEec----------CeeeeecCcEEEeeCcEEEEEe
Q psy9934 77 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHCTGKLGEVLIRCNNILYIRG 146 (158)
Q Consensus 77 ~dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~~~~~g~~~iRG~~I~~i~~ 146 (158)
.++...|.++++++|+|+|+|||+|+|+|++||+||||+|+||+|+.. +++.+++|.+||||+||++|+.
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEe
Confidence 356788999999999999999999999999999999999999999852 2357899999999999999996
Q ss_pred CCC
Q psy9934 147 AEE 149 (158)
Q Consensus 147 ~~~ 149 (158)
.+.
T Consensus 83 e~p 85 (231)
T 3pgw_B 83 EGP 85 (231)
T ss_pred cCC
Confidence 654
No 46
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.75 E-value=1.3e-18 Score=137.77 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=64.9
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEe----------ccceecceeEEEEecCCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIID----------GHCTGKLGEVLIRSLTMSTPLP 76 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------~~~~~~lg~~~iRG~~i~~I~p 76 (158)
+++-.+|.+++||+|+|+|+|||+|.|+|++||+||||+|+||+|++. +++.+.+|+++|||++|.++..
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEe
Confidence 578899999999999999999999999999999999999999999852 2357899999999999999874
Q ss_pred CC
Q psy9934 77 CN 78 (158)
Q Consensus 77 ~d 78 (158)
..
T Consensus 83 e~ 84 (231)
T 3pgw_B 83 EG 84 (231)
T ss_pred cC
Confidence 43
No 47
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.75 E-value=4e-19 Score=130.41 Aligned_cols=68 Identities=32% Similarity=0.416 Sum_probs=62.7
Q ss_pred CcccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCCc
Q psy9934 81 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 152 (158)
Q Consensus 81 ~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~~ 152 (158)
++|+++++++|.|+|++|++|+|+|.|||+|||++|+||+|+ .+ +++|.++|||+||++|+++++..+
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~-~~---~~lg~v~IRG~nI~~I~~~d~~~d 70 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK-AG---EKFNRVFIMYRYIVHIDSTERRID 70 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECT-TC---CEEEEEEECGGGEEEEEECCCCCC
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEE-cC---CEeceEEEeCCeEEEEEcCCcccC
Confidence 478899999999999999999999999999999999999997 32 688999999999999999998754
No 48
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.72 E-value=3.4e-18 Score=125.42 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=60.1
Q ss_pred hHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCC
Q psy9934 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 10 ~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
.++|++++|++|+|+|+||++|.|+|.+||+|||++|+||+|+. .+++|.++|||++|.++.+.++
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~IRG~nI~~I~~~d~ 67 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVFIMYRYIVHIDSTER 67 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEEECGGGEEEEEECCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEEEeCCeEEEEEcCCc
Confidence 36899999999999999999999999999999999999999972 3689999999999999886544
No 49
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.83 E-value=5.6e-09 Score=71.03 Aligned_cols=62 Identities=24% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCchHHHhhcCCCEEEEEEeCCcEEEEEEeEec-CcceeEEceeeEEEeccceecceeEEEEecCCCCCC
Q psy9934 7 CNPKPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPL 75 (158)
Q Consensus 7 ~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~ 75 (158)
.+|+ .|++++||+|.|.|.||++|+|.|.++| ...|++|.||.+ ..+...++|.|+.|..+.
T Consensus 7 ~~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~------~~~~~~~iI~G~aI~eI~ 69 (86)
T 1y96_A 7 KGPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE------DGSMSVTGIMGHAVQTVE 69 (86)
T ss_dssp SCHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT------TSCEEEEEECGGGEEEEE
T ss_pred CCHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc------CCeEEEEEEecceEEEEE
Confidence 4666 7899999999999999999999999999 999999999922 346689999999998875
No 50
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.68 E-value=2.1e-08 Score=68.22 Aligned_cols=65 Identities=23% Similarity=0.201 Sum_probs=57.6
Q ss_pred cccccccceeeEeeccccEEEEEEEEec-cccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCCc
Q psy9934 82 FLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGDE 152 (158)
Q Consensus 82 ~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~~ 152 (158)
.++++++|+|.|.|.+|++|+|+|.+|| ..+|++|.+|. ++ .++..++|.|..|..|...++.++
T Consensus 11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~---~~---~~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL---ED---GSMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC---TT---SCEEEEEECGGGEEEEEEEECCCH
T ss_pred HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc---cC---CeEEEEEEecceEEEEEEecchhH
Confidence 5789999999999999999999999999 89999999992 23 355889999999999998887764
No 51
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.14 E-value=0.00088 Score=44.55 Aligned_cols=68 Identities=26% Similarity=0.275 Sum_probs=45.3
Q ss_pred CCCCCCCCchHHHhhc--CCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCC
Q psy9934 1 MSTPLPCNPKPFLNLL--TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCN 78 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~--~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~d 78 (158)
|++...-..-.||+.+ -..+|.|.|.||..+.|++.+||.|+ +.|++ ++ ..+|-=..|+++.|..
T Consensus 1 m~~~~~nlQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~~------g~------~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLRN------TV------TQMVYKHAISTVVPAR 67 (79)
T ss_dssp -----CTTHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEES------SS------EEEEEGGGEEEEEESS
T ss_pred CCccccchHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEEC------Cc------eEEEEeeeEEEEeecC
Confidence 5554556677888888 45569999999999999999999999 44532 21 2355666666666655
Q ss_pred CCC
Q psy9934 79 PKP 81 (158)
Q Consensus 79 P~~ 81 (158)
|..
T Consensus 68 ~v~ 70 (79)
T 3sb2_A 68 AVN 70 (79)
T ss_dssp CCC
T ss_pred cee
Confidence 433
No 52
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.96 E-value=0.0012 Score=43.40 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCCCchHHHhhcC--CCEEEEEEeCCcEEEEEEeEecCcceeEEce
Q psy9934 5 LPCNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (158)
Q Consensus 5 ~~~~p~~~L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 48 (158)
..-..-.||+++. ..+|.|.|.||..+.|++.+||.|+ +.|++
T Consensus 6 ~~~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 6 GQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp --CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred ccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 3445667888885 7889999999999999999999999 55543
No 53
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.90 E-value=0.0018 Score=43.25 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCchHHHhhc--CCCEEEEEEeCCcEEEEEEeEecCcceeEEc
Q psy9934 6 PCNPKPFLNLL--TGKSVICKLKWGHEYKGILVSTDGYMNCQLA 47 (158)
Q Consensus 6 ~~~p~~~L~~~--~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 47 (158)
.-..-.||+.+ ...+|+|.|.||..+.|++.+||.|+ +.|+
T Consensus 5 ~nlQd~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 5 HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp -CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cchHHHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 34566778877 47789999999999999999999999 5554
No 54
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0016 Score=42.40 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCcceeE
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQ 45 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~mNlv 45 (158)
.+.+|+|.|.||..+.|++.+||.|+=+.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 56789999999999999999999999433
No 55
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.78 E-value=0.0015 Score=43.27 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCCCCCCCchHHHhhcC--CCEEEEEEeCCcEEEEEEeEecCcceeE
Q psy9934 1 MSTPLPCNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQ 45 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~mNlv 45 (158)
||+...-..-.||+.+. +.+|+|.|.||..+.|++.+||.|+=+.
T Consensus 4 ~~~~~~nlQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 4 GSMKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp ------CHHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccccccChHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 44444455667888875 8889999999999999999999999433
No 56
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.64 E-value=0.0033 Score=41.57 Aligned_cols=61 Identities=23% Similarity=0.221 Sum_probs=41.6
Q ss_pred CCchHHHhhcC--CCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEecCCCCCCCCCC
Q psy9934 7 CNPKPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLPCNP 79 (158)
Q Consensus 7 ~~p~~~L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p~dP 79 (158)
-..-.||+.+. ..+|.|.|.||..+.|++.+||.|+ +.|+. ++ ...+|-=..|+++.|..|
T Consensus 6 ~lQd~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~-VlL~~-----~g------~~qLIYKhAISTI~p~~~ 68 (77)
T 1kq1_A 6 NIQDKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYV-VSLNS-----QG------KQHLIYKHAISTYTVETE 68 (77)
T ss_dssp CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEEE-----TT------EEEEEEGGGEEEEEC---
T ss_pred ccHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEEE-----CC------eeEEEEeeeEEEEeECcc
Confidence 44556788885 8889999999999999999999999 44442 11 123455555666555443
No 57
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.61 E-value=0.002 Score=44.90 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCCCchHHHhhcCCC--EEEEEEeCCcEEEEEEeEecCcceeEEc
Q psy9934 5 LPCNPKPFLNLLTGK--SVICKLKWGHEYKGILVSTDGYMNCQLA 47 (158)
Q Consensus 5 ~~~~p~~~L~~~~~k--~V~V~l~~g~~~~G~L~~~D~~mNlvL~ 47 (158)
..-..-.||+.+..+ +|.|.|.||..+.|++.+||.|+ +.|+
T Consensus 6 ~~nlQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 6 GQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp --CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred ccccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 344566788888444 79999999999999999999999 4554
No 58
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.017 Score=37.46 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=28.9
Q ss_pred cccccc--cceeeEeeccccEEEEEEEEeccccceee
Q psy9934 82 FLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQL 116 (158)
Q Consensus 82 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 116 (158)
||+.+. +.+|.|-|.+|..++|.+.|||+|+=+.-
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVK 53 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 655554 45889999999999999999999986664
No 59
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=95.74 E-value=0.023 Score=38.31 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=48.5
Q ss_pred hcCCCEEEEEEeCCcEEEEEEeEec-CcceeEEceeeEEE-ecc--------ceecceeEEEEecCCCCCCC
Q psy9934 15 LLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEII-DGH--------CTGKLGEVLIRSLTMSTPLP 76 (158)
Q Consensus 15 ~~~~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~-~~~--------~~~~lg~~~iRG~~i~~I~p 76 (158)
.|+|+++.+..+.+-.|.|+|..+| +---+.|+||..+- .+. ...-...+..||+.|..+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V 81 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRV 81 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEE
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEE
Confidence 4799999999999999999999999 56679999998772 211 01245678889998887653
No 60
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.63 E-value=0.0067 Score=40.09 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.8
Q ss_pred cccccc--cceeeEeeccccEEEEEEEEeccccceeec
Q psy9934 82 FLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLA 117 (158)
Q Consensus 82 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~ 117 (158)
||+.+. +.+|.|.|.+|-.++|.+.+||+|+=+.-.
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE
Confidence 555555 569999999999999999999999866643
No 61
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=95.51 E-value=0.062 Score=35.84 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=49.4
Q ss_pred hhcCCCEEEEEEeCCc-EEEEEEeEecCc-ceeEEceeeEEEeccceecceeEEEEecCCCCCC
Q psy9934 14 NLLTGKSVICKLKWGH-EYKGILVSTDGY-MNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPL 75 (158)
Q Consensus 14 ~~~~~k~V~V~l~~g~-~~~G~L~~~D~~-mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~ 75 (158)
.+++|+.|.+.++++- .|+|.|..+|+. -++.|.+| +.+|- +.....+.+|+..|..+.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~--f~NG~-~~~s~eVtls~~DI~~L~ 65 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP--FHNGV-KCLVPEVTFRAGDITELK 65 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE--EETTE-ECSSSEEEEEGGGCSEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh--hhCCC-CCCCcEEEEEecChhheE
Confidence 4789999999999999 999999999954 57999999 45664 455678999999988754
No 62
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.26 E-value=0.017 Score=38.49 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=29.1
Q ss_pred cccccc--cceeeEeeccccEEEEEEEEeccccceee
Q psy9934 82 FLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQL 116 (158)
Q Consensus 82 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 116 (158)
||+.+. +.+|.|-|.||-.++|.+.|||+|+=+.-
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 555544 56999999999999999999999986664
No 63
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=95.17 E-value=0.019 Score=37.54 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=29.6
Q ss_pred Ccccccc--cceeeEeeccccEEEEEEEEeccccceee
Q psy9934 81 PFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQL 116 (158)
Q Consensus 81 ~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 116 (158)
.+|+.+. +.+|.|.|.+|..++|.+.+||+|+=+.-
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 3566655 56999999999999999999999986553
No 64
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.97 E-value=0.041 Score=39.28 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=33.0
Q ss_pred HhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEE--ceeeEE
Q psy9934 13 LNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQL--ASTEEI 52 (158)
Q Consensus 13 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL--~~~~e~ 52 (158)
...++|.+|.|+|+||..++|++..+|. -+|+| .+|...
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s 47 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS 47 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc
Confidence 4678999999999999999999999993 34666 998643
No 65
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.92 E-value=0.025 Score=37.47 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=28.2
Q ss_pred cccccc--cceeeEeeccccEEEEEEEEecccccee
Q psy9934 82 FLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQ 115 (158)
Q Consensus 82 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlv 115 (158)
||+.+. +.+|.|.|.+|..++|.+.+||+|+=+.
T Consensus 12 fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 12 FLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 555554 3489999999999999999999998665
No 66
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=94.89 E-value=0.012 Score=40.98 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=30.6
Q ss_pred Ccccccccc--eeeEeeccccEEEEEEEEeccccceeecc
Q psy9934 81 PFLNLLTGK--SVICKLKWGHEYKGILVSTDGYMNCQLAS 118 (158)
Q Consensus 81 ~~L~~~~~k--~V~V~L~~g~~~~G~L~~~D~~mNlvL~~ 118 (158)
.||+.+..+ +|.|.|.+|-.++|++.+||+|+=|.-++
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 356666544 99999999999999999999998666533
No 67
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=94.76 E-value=0.039 Score=36.43 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.5
Q ss_pred cccccc--cceeeEeeccccEEEEEEEEeccccceee
Q psy9934 82 FLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQL 116 (158)
Q Consensus 82 ~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 116 (158)
||+.+. +.+|.|-|.||..++|.+.+||+|+=+.-
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 555554 56999999999999999999999986664
No 68
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=94.59 E-value=0.029 Score=38.34 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=48.7
Q ss_pred CchHHHhhcCCCEEEEEEeCCcEEEEEEeEec-CcceeEEceeeEEE-ecc--------ceecceeEEEEecCCCCCCC
Q psy9934 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEII-DGH--------CTGKLGEVLIRSLTMSTPLP 76 (158)
Q Consensus 8 ~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~-~~~--------~~~~lg~~~iRG~~i~~I~p 76 (158)
.|-.--..++|+++.+..+.+-.|.|+|..+| +---+.|+||..+- .+. ...-+..+..||+.|..+..
T Consensus 9 ~~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V 87 (95)
T 2fb7_A 9 EDPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTV 87 (95)
T ss_dssp -------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEE
T ss_pred CCCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEE
Confidence 45556678999999999999999999999999 56668999988762 211 01235578889998887653
No 69
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=94.27 E-value=0.17 Score=34.53 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCCCcccccccceeeEeeccccEEEEEEEEec-cccceeecceEEE-ecCe--------eeeecCcEEEeeCcEEEEEeC
Q psy9934 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEI-IDGH--------CTGKLGEVLIRCNNILYIRGA 147 (158)
Q Consensus 78 dP~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~-~~~~--------~~~~~g~~~iRG~~I~~i~~~ 147 (158)
.|..-..+++++++.+..+.+-.|.|+|..+| +---+.|.++..+ .+|. ...-+..++.||+.|.-+...
T Consensus 9 ~~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~ 88 (95)
T 2fb7_A 9 EDPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVC 88 (95)
T ss_dssp -------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEES
T ss_pred CCCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEe
Confidence 34455667899999999999999999999999 5677888887654 1111 123568999999999999887
Q ss_pred CCCC
Q psy9934 148 EEGD 151 (158)
Q Consensus 148 ~~~~ 151 (158)
+...
T Consensus 89 e~p~ 92 (95)
T 2fb7_A 89 EPPK 92 (95)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6543
No 70
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=93.86 E-value=0.16 Score=33.92 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=48.2
Q ss_pred hHHHhhcCCCEEEEEEeCCcEEEEEEeEec-CcceeEEceeeEEEeccceecceeEEEEecCCCCC
Q psy9934 10 KPFLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTP 74 (158)
Q Consensus 10 ~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I 74 (158)
|.+|..+.|++|.+.+.++-++.|+..++| ...|+..++-. .+-...++..+|++.|..+
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-----TPiGv~~eAlLR~~Dii~~ 81 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-----TPIGVQAEALLRCSDIISY 81 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-----CTTCCEEEEEEEGGGEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-----CCcccchhhhhhcCCEEEE
Confidence 567888899999999999999999999999 67777655532 1234567899999988754
No 71
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=93.80 E-value=0.35 Score=32.48 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=51.7
Q ss_pred ccccceeeEeeccccEEEEEEEEec-cccceeecceEEEe-cCe--------eeeecCcEEEeeCcEEEEEeCCC
Q psy9934 85 LLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEII-DGH--------CTGKLGEVLIRCNNILYIRGAEE 149 (158)
Q Consensus 85 ~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~-~~~--------~~~~~g~~~iRG~~I~~i~~~~~ 149 (158)
.++++++.+..+.+-.|.|+|..+| +---+.|.++..+- +|. ...-+..++.||+.|.-+...+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 3679999999999999999999999 56778899988652 221 12346789999999999887654
No 72
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=92.32 E-value=0.21 Score=33.37 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=46.9
Q ss_pred cccccccceeeEeeccccEEEEEEEEec-cccceeecceEEEecCeeeeecCcEEEeeCcEEEEEe
Q psy9934 82 FLNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 146 (158)
Q Consensus 82 ~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~ 146 (158)
+|..+.+++|.+.+..+.+..|+..++| ...|+..++=. +. .......++|++-|++++-
T Consensus 23 ~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-TP----iGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 23 SLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-TP----IGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-CT----TCCEEEEEEEGGGEEEEEE
T ss_pred HHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-CC----cccchhhhhhcCCEEEEEe
Confidence 3556779999999999999999999999 56777655543 11 2245788999999999874
No 73
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=91.69 E-value=0.28 Score=34.96 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=42.0
Q ss_pred ccccccceeeEeeccccEEEEEEEEec-cccceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCC
Q psy9934 83 LNLLTGKSVICKLKWGHEYKGILVSTD-GYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 151 (158)
Q Consensus 83 L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~ 151 (158)
..++++..|.|.|++|..++|++..+| +.+=|.|++|... ..-|+.+.|.-+...+-.+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~s----------~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLANDS----------TKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTTE----------EEEEEGGGEEEEEECCSCC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccccc----------cceeecccccceeeeeccc
Confidence 356789999999999999999999998 3344444888421 1167777776666555443
No 74
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=91.48 E-value=0.32 Score=31.36 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=30.4
Q ss_pred hHHHhhc--CCCEEEEEEeCCcEEEEEEeEecCcceeEEce
Q psy9934 10 KPFLNLL--TGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (158)
Q Consensus 10 ~~~L~~~--~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 48 (158)
...|+++ -..+|.|+|.+|..+.|.+.-+|+|+ +.|.+
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~ 50 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVD 50 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEEC
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEc
Confidence 3556666 35679999999999999999999998 44444
No 75
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=91.39 E-value=0.5 Score=29.89 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHhhcCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEE
Q psy9934 11 PFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEI 52 (158)
Q Consensus 11 ~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~ 52 (158)
+-|....|++|-|-..+...+.|+|..||+-. +.|+|++..
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~ 49 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDV 49 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEET
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHH
Confidence 45788899999999999999999999999776 788999876
No 76
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=90.44 E-value=0.77 Score=29.68 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=30.5
Q ss_pred hHHHhhcC--CCEEEEEEeCCcEEEEEEeEecCcceeEEcee
Q psy9934 10 KPFLNLLT--GKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (158)
Q Consensus 10 ~~~L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 49 (158)
.+.|++++ ..+|.|+|.+|..+.|.+.-.|+++ +.|.+.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~ 53 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADE 53 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcC
Confidence 35677774 4569999999999999999999998 445443
No 77
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=89.99 E-value=1.2 Score=29.49 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred ccccccceeeEeecccc-EEEEEEEEeccc-cceeecceEEEecCeeeeecCcEEEeeCcEEEEEeCCCCC
Q psy9934 83 LNLLTGKSVICKLKWGH-EYKGILVSTDGY-MNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRGAEEGD 151 (158)
Q Consensus 83 L~~~~~k~V~V~L~~g~-~~~G~L~~~D~~-mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~~~~~~ 151 (158)
..+++++.|.+.-+++- .|+|.+..+|+. -+|.|.+|. .+|- +.....+.+|+.-|.-+...+..+
T Consensus 4 a~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG~-~~~s~eVtls~~DI~~L~ii~~~~ 71 (84)
T 2vc8_A 4 ATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNGV-KCLVPEVTFRAGDITELKILEIPG 71 (84)
T ss_dssp -CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETTE-ECSSSEEEEEGGGCSEEEEEECCC
T ss_pred cccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCCC-CCCCcEEEEEecChhheEEEecCC
Confidence 45788999999999998 999999999965 579999995 4675 345577999999887665544433
No 78
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=88.65 E-value=0.5 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.009 Sum_probs=24.9
Q ss_pred cceeeEeeccccEEEEEEEEeccccceee
Q psy9934 88 GKSVICKLKWGHEYKGILVSTDGYMNCQL 116 (158)
Q Consensus 88 ~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 116 (158)
..+|.|+|.+|..++|.+..+|+|+=+..
T Consensus 21 k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 21 QTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 34899999999999999999999875543
No 79
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=87.97 E-value=1.1 Score=31.61 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCEEEEEEeCCcEEEEEEeEec--CcceeEEceeeEEEeccceecceeEEEEecCCCCCCC---CCCCCccccccccee
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTD--GYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLP---CNPKPFLNLLTGKSV 91 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D--~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p---~dP~~~L~~~~~k~V 91 (158)
+|.+|..+-+||+.|.|++.+.. .|..+..+|-.-..+ ..++ .|..-.. ..| ..+..|
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS~s~d-----l~pe------DIvs~dc~~~GpP------~~G~~V 70 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDN-----LYPE------DIVSQDCLQFGPP------AEGEVV 70 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSCEEEE-----ECGG------GBCSSCHHHHCCC------CTTCEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCCccCC-----CCHh------hcccccccccCCC------CCCCEE
Confidence 79999999999999999999977 455555555443311 1111 2222110 112 238899
Q ss_pred eEeeccccEEEEEEEEec
Q psy9934 92 ICKLKWGHEYKGILVSTD 109 (158)
Q Consensus 92 ~V~L~~g~~~~G~L~~~D 109 (158)
.|+-.+|..|.++..|.-
T Consensus 71 ~V~W~DG~~y~a~f~g~~ 88 (118)
T 2qqr_A 71 QVRWTDGQVYGAKFVASH 88 (118)
T ss_dssp EEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCCEeeeEEecee
Confidence 999999999999998854
No 80
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=84.88 E-value=1.1 Score=28.99 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=32.9
Q ss_pred cceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEe
Q psy9934 88 GKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 146 (158)
Q Consensus 88 ~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~ 146 (158)
..+|.|+|.+|..++|.+.-+|+++=+..++ .+ ..++|.-..|.+|.+
T Consensus 23 k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~-~~----------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 23 AAPVEIKLVTGDAITGRVLWQDPTCVCIADE-NS----------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp CCEEEEEETTSCEEEEEEEEECSSEEEEEC--------------CEEEEEGGGEEEEEE
T ss_pred CceEEEEecCCCEEEEEEEEECCCEEEEEcC-CC----------CeEEEEeeeeEEEEe
Confidence 3489999999999999999999887444322 11 124555556666654
No 81
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=83.91 E-value=0.71 Score=34.19 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCCCCCchH---HHhhcCCCEEEEEE----eCCcEEEEEEeEecCc
Q psy9934 2 STPLPCNPKP---FLNLLTGKSVICKL----KWGHEYKGILVSTDGY 41 (158)
Q Consensus 2 ~~~~~~~p~~---~L~~~~~k~V~V~l----~~g~~~~G~L~~~D~~ 41 (158)
|+|.-.-||. .+..+.|+.|.|++ .+.+.+.|+|.++|+-
T Consensus 85 SSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 85 TSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp ECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred eCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 5555555554 45566999999999 4559999999999954
No 82
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=76.78 E-value=5.3 Score=25.15 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=38.5
Q ss_pred cccccccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEeeCcEEEEEe
Q psy9934 82 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIRG 146 (158)
Q Consensus 82 ~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG~~I~~i~~ 146 (158)
.|..-.+++|-+...+...|+|+|.-||+-. +.|.|++.+. |.+ --..+++=+.|-.|..
T Consensus 10 tL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~-GNk---~k~liv~idDinWimL 69 (71)
T 1ycy_A 10 VLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI-GNR---GKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT-EEE---EEEEEEEGGGEEEEEE
T ss_pred HHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh-ccc---cceeEEEeccceEEEe
Confidence 3556678999999999999999999999754 6678888753 221 1245556566555543
No 83
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=74.09 E-value=3.9 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCcceeEEceee
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTE 50 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~ 50 (158)
+|++|.|...+|+.+.|+..++|+.-.|+++...
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~~ 256 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGG 256 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEETT
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEECC
Confidence 7999999988899999999999999999887543
No 84
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=72.46 E-value=6.3 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=27.5
Q ss_pred cCCCEEEEEEeCCcEEEEEEeEecC-cceeEEceeeEEE
Q psy9934 16 LTGKSVICKLKWGHEYKGILVSTDG-YMNCQLASTEEII 53 (158)
Q Consensus 16 ~~~k~V~V~l~~g~~~~G~L~~~D~-~mNlvL~~~~e~~ 53 (158)
.+|.-|+++.+||+.|-|+++.... .+=+..+|-.+.+
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~W 55 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQW 55 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEE
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCccee
Confidence 3799999999999999999976653 3323335555553
No 85
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=71.37 E-value=1.1 Score=31.86 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCCEEEEEEeCCcEEEEEEeEec--CcceeEEceeeEEEeccceecceeEEEEecCCCCCCC---CCCCCccccccccee
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTD--GYMNCQLASTEEIIDGHCTGKLGEVLIRSLTMSTPLP---CNPKPFLNLLTGKSV 91 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D--~~mNlvL~~~~e~~~~~~~~~lg~~~iRG~~i~~I~p---~dP~~~L~~~~~k~V 91 (158)
+|.+|..+-+||+.|.|++.+.. .|..+..+|-.-..+ ..+ ..|..-.. ..| ..|..|
T Consensus 9 vGq~V~ak~~ngryy~~~V~~~~~~~~y~V~F~DgS~s~d-----l~P------edIvs~dc~~~GpP------~~G~~V 71 (123)
T 2xdp_A 9 VGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRD-----TFP------EDIVSRDCLKLGPP------AEGEVV 71 (123)
T ss_dssp TTCCCCCCCCCCCCCCCEEEEEEEEEEEEEEETTSCEEEE-----ECG------GGBCSSCHHHHCCC------CTTCEE
T ss_pred cCCEEEEECCCCcEEeEEEEEEeeEEEEEEEcCCCCccCC-----CCH------hHcccccccccCCC------CCCCEE
Confidence 68999999999999999999887 455555554333211 001 11111110 112 238899
Q ss_pred eEeeccccEEEEEEEEec
Q psy9934 92 ICKLKWGHEYKGILVSTD 109 (158)
Q Consensus 92 ~V~L~~g~~~~G~L~~~D 109 (158)
.|+-.||..|.|+..|.-
T Consensus 72 ~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 72 QVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp EEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCCEEeEEEeeee
Confidence 999999999999998875
No 86
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=70.70 E-value=4.7 Score=31.89 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=29.4
Q ss_pred cccceeeEeeccccEEEEEEEEeccccceeecce
Q psy9934 86 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 119 (158)
Q Consensus 86 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 119 (158)
..+++|.+.+.+|..++|+..|+|+.-.|+|+..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3478899988888999999999999999998754
No 87
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=68.39 E-value=14 Score=25.03 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=43.7
Q ss_pred hhcCCCEEEEEEeCCc-EEEEEEeEecCcceeEEceeeEEEeccc-eecceeEEEEecCCCCC
Q psy9934 14 NLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHC-TGKLGEVLIRSLTMSTP 74 (158)
Q Consensus 14 ~~~~~k~V~V~l~~g~-~~~G~L~~~D~~mNlvL~~~~e~~~~~~-~~~lg~~~iRG~~i~~I 74 (158)
.+++|+.|.|.+.+.- .|+|.+..+|+ -+++|.+|-. +|-+ +....++.+|...|..+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr--NGiplk~~~~EVtLsa~DI~~L 67 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR--NGVPLRKQNAEVVLKCTDIRSI 67 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE--TTEECSCSSSCEEEETTTEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh--cCcCcCCCCceEEEEecchhhe
Confidence 3789999999999997 99999999995 4488888764 3421 23456677777776654
No 88
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=68.12 E-value=6.4 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=27.7
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCc---ceeEEceeeEE
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGY---MNCQLASTEEI 52 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~---mNlvL~~~~e~ 52 (158)
.|..|.+.-+||+.|-|++..+|.. +=+...|-.+.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~ 44 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQF 44 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeE
Confidence 4788999999999999999998843 33444555554
No 89
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=67.75 E-value=3.5 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.1
Q ss_pred ccccccceeeEeec----cccEEEEEEEEeccc
Q psy9934 83 LNLLTGKSVICKLK----WGHEYKGILVSTDGY 111 (158)
Q Consensus 83 L~~~~~k~V~V~L~----~g~~~~G~L~~~D~~ 111 (158)
+..+.++.|.|+++ +.+.++|+|.++|+-
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 45678999999994 458999999999853
No 90
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=63.40 E-value=5.6 Score=30.62 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEe
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRS 68 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG 68 (158)
+|++|.+...++ +.|+..++|+.-.|+++..... ..-..|.+.+|+
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G~----~~~~~Gev~~r~ 232 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEGI----KEILSGEFSLRR 232 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEETTEE----EEECSCCEEEC-
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEECCCe----EEEEEeEEEEec
Confidence 799999987655 9999999999999998753321 123457777765
No 91
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=62.27 E-value=5.9 Score=30.50 Aligned_cols=46 Identities=20% Similarity=0.042 Sum_probs=33.0
Q ss_pred ccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEee
Q psy9934 87 TGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138 (158)
Q Consensus 87 ~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG 138 (158)
.+++|.+...++ +.|+..|+|+.-.|+++.... ......|.+.+|+
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G----~~~~~~Gev~~r~ 232 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEG----IKEILSGEFSLRR 232 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEETTE----EEEECSCCEEEC-
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEECCC----eEEEEEeEEEEec
Confidence 578888876655 999999999999999875422 2223457777775
No 92
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=60.54 E-value=21 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.018 Sum_probs=27.8
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCcceeEEce
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 48 (158)
+|++|.|...++..+.|+..++|+.-.|+ +.
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 89999999888777999999999999888 54
No 93
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=60.09 E-value=16 Score=29.17 Aligned_cols=48 Identities=23% Similarity=0.134 Sum_probs=35.1
Q ss_pred cCCCEEEEEEeCCcEEEEEEeEecCcceeEEceeeEEEeccceecceeEEEEe
Q psy9934 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRS 68 (158)
Q Consensus 16 ~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~~~iRG 68 (158)
.+|++|.|... +..+.|+..++|+.-.|+++..... ..-..|.|.+|.
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~g~----~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDGII----KPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETTEE----EEESSCEEEEC-
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECCCE----EEEEeeeEEEec
Confidence 38999999875 5589999999999999998754321 123457777764
No 94
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=57.01 E-value=6.3 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=26.0
Q ss_pred CCCCCCCCch-----HH--HhhcCCCEEEEEEeCCcEEEEEEe
Q psy9934 1 MSTPLPCNPK-----PF--LNLLTGKSVICKLKWGHEYKGILV 36 (158)
Q Consensus 1 m~~~~~~~p~-----~~--L~~~~~k~V~V~l~~g~~~~G~L~ 36 (158)
||+.....|. +. +.-..+.++.|+++||..+.|+..
T Consensus 1 m~~~~~Y~pI~Cd~yD~LElAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 1 MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp CCCCCCCCSSCCSSHHHHHHHHTTTTCEEEECTTTCCEEESSC
T ss_pred CCCCCCceeechhhhhHHHHHHHcCCeEEEEEeCCCEEEEEEE
Confidence 5665555554 33 344588999999999999999544
No 95
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=55.33 E-value=10 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=19.7
Q ss_pred hHHHhhcC--CCEEEEEEeCCcEEEEEEe
Q psy9934 10 KPFLNLLT--GKSVICKLKWGHEYKGILV 36 (158)
Q Consensus 10 ~~~L~~~~--~k~V~V~l~~g~~~~G~L~ 36 (158)
++-+...+ ..+|.++|.||+.+.|++-
T Consensus 18 Le~~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHHHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHHHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 33344443 3579999999999999973
No 96
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=49.44 E-value=31 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=33.7
Q ss_pred cccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEee
Q psy9934 86 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138 (158)
Q Consensus 86 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iRG 138 (158)
..+++|.+... +..+.|+..|+|+.-.|+++... |......|.+.+|.
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~----g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDG----IIKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETT----EEEEESSCEEEEC-
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECC----CEEEEEeeeEEEec
Confidence 35788888765 45899999999999999986532 22223456777764
No 97
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=46.97 E-value=8.1 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecC---cceeEEceeeEE
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDG---YMNCQLASTEEI 52 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~---~mNlvL~~~~e~ 52 (158)
.|.-|++.-+||+.|-|++..+|. .+=+..+|-.+.
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~ 67 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQF 67 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeE
Confidence 789999999999999999999884 333444555554
No 98
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=45.94 E-value=59 Score=21.99 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=41.5
Q ss_pred eEeeccccEEEEEEEEeccccceeecceEEEec-----Cee----------eeecCcEEEeeCcEEEEEeCCCC
Q psy9934 92 ICKLKWGHEYKGILVSTDGYMNCQLASTEEIID-----GHC----------TGKLGEVLIRCNNILYIRGAEEG 150 (158)
Q Consensus 92 ~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-----~~~----------~~~~g~~~iRG~~I~~i~~~~~~ 150 (158)
.++|++|.++.|.+.--|.. +.++|+.+... |+. ...-..++||.+.|+++..+..+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~e 78 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKDD 78 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCHH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCHH
Confidence 47899999999999966664 88888887531 110 11235899999999999887653
No 99
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=45.63 E-value=11 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCCCCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEecC
Q psy9934 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDG 40 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~ 40 (158)
|++++|-.--+.|.++.|++|++ .|++.+.|+
T Consensus 1 m~~~tpRVn~~~L~~~~g~~Vri--------vGkV~~~~g 32 (114)
T 4gop_A 1 MEKPTPLINSSMLGQYVGQTVRI--------VGKVHKVTG 32 (114)
T ss_dssp CCCCCCEECTTTGGGGTTSEEEE--------EEEEEEEET
T ss_pred CCCCCceECHHHHHhhCCCeEEE--------EEEEeeeCC
Confidence 88888888889999999999986 577888886
No 100
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=44.07 E-value=9.1 Score=26.76 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=24.9
Q ss_pred CCCCCCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEec
Q psy9934 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTD 39 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D 39 (158)
|+.++|-.-.++|.++.||+|++. |++..++
T Consensus 5 m~~p~pRVn~s~L~~fvgk~Vriv--------GkV~~~~ 35 (121)
T 3kdf_A 5 MDLPRSRINAGMLAQFIDKPVCFV--------GRLEKIH 35 (121)
T ss_dssp GGSCCEEECGGGGGGGTTCEEEEE--------EEEEEEC
T ss_pred ccCCcceECHHHHHhhCCCeEEEE--------EEEEEEc
Confidence 677888888899999999999864 5666664
No 101
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=43.49 E-value=59 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCcccccccceeeEeeccccEEEEEEEEec
Q psy9934 80 KPFLNLLTGKSVICKLKWGHEYKGILVSTD 109 (158)
Q Consensus 80 ~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D 109 (158)
.+...=-++..|.++-+||+.|-|+++...
T Consensus 11 ~pa~~~~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 11 SPAVTYALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CCCCCCCTTCEEEEECTTSCEEEEEEEEEC
T ss_pred CcccccccCCeEEEEecCCCEEEEEEEecC
Confidence 333334467799999999999999995444
No 102
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=40.59 E-value=32 Score=26.32 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=33.2
Q ss_pred cccceeeEeeccccEEEEEEEEeccccceeecceEEEecCeeeeecCcEEEe
Q psy9934 86 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137 (158)
Q Consensus 86 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~iR 137 (158)
..+++|.+...++..+.|+..|+|+.-.|+ +... |......|.+.+|
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~~~----G~~~~~~Gev~~~ 236 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GTEK----GIERIPSGICIHV 236 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EETT----EEEEEEGGGEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-EcCC----CCEEEEEEEEEEe
Confidence 368899998877766999999999999998 5332 2222344666554
No 103
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=40.15 E-value=36 Score=20.79 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=21.5
Q ss_pred cceeeEeeccccEEEEEEEEeccc
Q psy9934 88 GKSVICKLKWGHEYKGILVSTDGY 111 (158)
Q Consensus 88 ~k~V~V~L~~g~~~~G~L~~~D~~ 111 (158)
+..|.++-+||+.|-|+++.+|..
T Consensus 7 GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 7 GQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCEEEEEecCCCEEeEEEEEEecC
Confidence 668999999999999999998855
No 104
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=37.91 E-value=22 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=23.8
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCcceeEEce
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 48 (158)
+|++|.+...++ +.|+..++|+.-.|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998776 999999999999999875
No 105
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.89 E-value=41 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.5
Q ss_pred cccceeeEeeccccEEEEEEEEeccc
Q psy9934 86 LTGKSVICKLKWGHEYKGILVSTDGY 111 (158)
Q Consensus 86 ~~~k~V~V~L~~g~~~~G~L~~~D~~ 111 (158)
-.+..|...-.||+.|.|++..+++.
T Consensus 15 ~vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 15 EEGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCCEEEEEEccCcEEEeEEEEEccC
Confidence 34778999999999999999999964
No 106
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=36.17 E-value=14 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCCCCCCCchHHHhhcCCCEEEEEEeCCcEEEEEEeEec
Q psy9934 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTD 39 (158)
Q Consensus 1 m~~~~~~~p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D 39 (158)
||++.|-.--++|.++.||+|++ .|++..++
T Consensus 26 m~~~~pRVN~s~L~~fvGk~Vri--------VGkV~~~~ 56 (142)
T 2pi2_E 26 MDLPRSRINAGMLAQFIDKPVCF--------VGRLEKIH 56 (142)
T ss_dssp GGSCCEEECGGGGGGSTTCEEEE--------EEEEEEEC
T ss_pred ccCCcceECHHHHHhhCCCEEEE--------EEEEeEEc
Confidence 56777777788999999999986 46677773
No 107
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=36.11 E-value=99 Score=20.86 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=50.9
Q ss_pred cccccceeeEeecccc-EEEEEEEEeccccceeecceEEEecCee-eeecCcEEEeeCcEEEEEeCCCCCc
Q psy9934 84 NLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHC-TGKLGEVLIRCNNILYIRGAEEGDE 152 (158)
Q Consensus 84 ~~~~~k~V~V~L~~g~-~~~G~L~~~D~~mNlvL~~~~e~~~~~~-~~~~g~~~iRG~~I~~i~~~~~~~~ 152 (158)
.+++++-|.|.-.+-- .|+|.+..+|+ -++.|.+|.. +|-. +.....+.+|..-|.-+...+-.++
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr--NGiplk~~~~EVtLsa~DI~~L~IIe~~~~ 75 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR--NGVPLRKQNAEVVLKCTDIRSIDLIEPAKQ 75 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE--TTEECSCSSSCEEEETTTEEEEEEEECCCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh--cCcCcCCCCceEEEEecchhheeeeccccc
Confidence 4678899999888775 99999999995 4499999885 5641 2456789999999888776665553
No 108
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=34.26 E-value=26 Score=26.83 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=23.6
Q ss_pred ccceeeEeeccccEEEEEEEEeccccceeecce
Q psy9934 87 TGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 119 (158)
Q Consensus 87 ~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 119 (158)
.+++|.+...++ +.|+..|+|+.-.|++++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 688888887666 9999999999999998753
No 109
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=33.88 E-value=44 Score=26.85 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.8
Q ss_pred cCCCEEEEEEeCCcEEEEEEeEecCcceeEEce
Q psy9934 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 48 (158)
Q Consensus 16 ~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~ 48 (158)
.+|++|.|... +..+.|+..++|+.-.|+++.
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 37999999764 678999999999999998864
No 110
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.61 E-value=54 Score=20.63 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCc---ceeEEceeeEE
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGY---MNCQLASTEEI 52 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~---mNlvL~~~~e~ 52 (158)
.|.-|+..-+||..|-|++..+|.+ +=+...|..+.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~ 50 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQF 50 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCee
Confidence 5888999999999999999999943 33444555554
No 111
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.13 E-value=55 Score=20.51 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.1
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecC
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDG 40 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~ 40 (158)
.|..|+..-.||+.|.|++..++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINI 39 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEET
T ss_pred CCCEEEEEEccCcEEEeEEEEEcc
Confidence 588899999999999999999995
No 112
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.43 E-value=4.5 Score=27.60 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=17.4
Q ss_pred EEEEEEeccccceeecceE
Q psy9934 102 KGILVSTDGYMNCQLASTE 120 (158)
Q Consensus 102 ~G~L~~~D~~mNlvL~~~~ 120 (158)
.|+..+||.-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 5678999999999999997
No 113
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=30.15 E-value=53 Score=26.34 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.9
Q ss_pred cccceeeEeeccccEEEEEEEEeccccceeecc
Q psy9934 86 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAS 118 (158)
Q Consensus 86 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~ 118 (158)
..+++|.+.. ++..+.|+..|+|+.-.|++++
T Consensus 277 ~~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 4577888875 4568999999999999999864
No 114
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=29.45 E-value=65 Score=22.38 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.4
Q ss_pred ccceeeEeeccccEEEEEEEEec--cccceeecc
Q psy9934 87 TGKSVICKLKWGHEYKGILVSTD--GYMNCQLAS 118 (158)
Q Consensus 87 ~~k~V~V~L~~g~~~~G~L~~~D--~~mNlvL~~ 118 (158)
++.+|..+-++|+.|+|++.+.. .|..+..+|
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~D 41 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDD 41 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETT
T ss_pred cCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCC
Confidence 47899999999999999999876 344444433
No 115
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=29.22 E-value=65 Score=24.39 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred cCCCEEEEEEeCCcEEEEEEeEecCcceeEEcee
Q psy9934 16 LTGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (158)
Q Consensus 16 ~~~k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 49 (158)
.+|++|.| +| +.|+..++|+.-.|+++..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 38999999 45 9999999999999998643
No 116
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.58 E-value=50 Score=20.47 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=28.1
Q ss_pred CCCEEEEEEeCCcEEEEEEeEecCc---ceeEEceeeEE
Q psy9934 17 TGKSVICKLKWGHEYKGILVSTDGY---MNCQLASTEEI 52 (158)
Q Consensus 17 ~~k~V~V~l~~g~~~~G~L~~~D~~---mNlvL~~~~e~ 52 (158)
.|.-|+..-+||+.|-|++..+|.. +=+...|..+.
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~ 48 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKY 48 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCcee
Confidence 5788999999999999999999943 44444555554
No 117
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=25.86 E-value=79 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.2
Q ss_pred CEEEEEEeCCcEEEEEEeEecCcceeEEcee
Q psy9934 19 KSVICKLKWGHEYKGILVSTDGYMNCQLAST 49 (158)
Q Consensus 19 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 49 (158)
.++.|.+.+|+.+.+++.++|+..+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999888766555
No 118
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=25.11 E-value=77 Score=26.50 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.9
Q ss_pred CEEEEEEeCCcEEEEEEeEecCcceeEEceee
Q psy9934 19 KSVICKLKWGHEYKGILVSTDGYMNCQLASTE 50 (158)
Q Consensus 19 k~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~ 50 (158)
..+.|.+.+|+++.+++.++|....|-|=.+.
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 46899999999999999999998887765543
No 119
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=24.25 E-value=74 Score=24.03 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.2
Q ss_pred ccceeeEeeccccEEEEEEEEeccccceeecce
Q psy9934 87 TGKSVICKLKWGHEYKGILVSTDGYMNCQLAST 119 (158)
Q Consensus 87 ~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 119 (158)
.+++|.+ +| ++|+..|+|+.-.|+++..
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 5678777 45 9999999999999998654
No 120
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=22.03 E-value=89 Score=26.10 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=27.2
Q ss_pred ceeeEeeccccEEEEEEEEeccccceeecceE
Q psy9934 89 KSVICKLKWGHEYKGILVSTDGYMNCQLASTE 120 (158)
Q Consensus 89 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~ 120 (158)
..+.|.+.+|+++.+++.++|....|.|=...
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 36889999999999999999999888765543
No 121
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=21.88 E-value=26 Score=25.30 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=40.7
Q ss_pred ccccceeeEee-ccccEEEEEEEEeccccceeecceEEEecC-----eeeeec---CcEEEeeCcEEEEEeCCCCCc
Q psy9934 85 LLTGKSVICKL-KWGHEYKGILVSTDGYMNCQLASTEEIIDG-----HCTGKL---GEVLIRCNNILYIRGAEEGDE 152 (158)
Q Consensus 85 ~~~~k~V~V~L-~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~-----~~~~~~---g~~~iRG~~I~~i~~~~~~~~ 152 (158)
+.+.|-+.|.| ++|++++..+-| |.++|-.-+..+-.+.| .....+ -.=+||+++|.+.....+.+|
T Consensus 65 SA~RK~arVqL~kNgk~vtAyIPg-~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGVrykvVrv~~vsl~al~kgkke 140 (142)
T 2xzm_L 65 SAVRKCVRVLLRKNSKKIAAFVPM-DGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKE 140 (142)
T ss_dssp CCEEEEEEEEETTTCCEEEEECCS-SSGGGTCCTTCEEEEEESSSSSSCCTTCSSCCEEEEEESSCBHHHHHSTTTC
T ss_pred cccccEEEEEEecCCeEEEEEeCC-CCcccccccCCEEEEEecccCCCccCCCCCceEEEEEECCeeHHHHhhcccc
Confidence 35567888999 699999887544 55554444444434332 211111 235789999887766655554
No 122
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=21.68 E-value=87 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=27.6
Q ss_pred ceeeEeeccccEEEEEEEEeccccceeecceE
Q psy9934 89 KSVICKLKWGHEYKGILVSTDGYMNCQLASTE 120 (158)
Q Consensus 89 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~ 120 (158)
..+.|.+.+|+.+.+++.+.|...+|.|=...
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~ 119 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 37889999999999999999999888776553
No 123
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=20.54 E-value=1.1e+02 Score=23.49 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=28.5
Q ss_pred chHHHhhcCCCEEEEEEeCCcEEEEEEeEecCcc
Q psy9934 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYM 42 (158)
Q Consensus 9 p~~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~m 42 (158)
++.+=+.++|+.+.-++.+|..+.|.++-+..|+
T Consensus 16 ~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 16 AVPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 4455567899999999999999999999988776
Done!