Your job contains 1 sequence.
>psy9934
MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK
LGEVLIRSLTMSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTE
EIIDGHCTGKLGEVLIRCNNILYIRGAEEGDEEGEMRE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9934
(158 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0000426 - symbol:SmF "Small ribonucleoprotein part... 297 2.5e-26 1
UNIPROTKB|F1Q0L5 - symbol:SNRPF "Uncharacterized protein"... 297 2.5e-26 1
UNIPROTKB|F1P4B8 - symbol:SNRPF "Uncharacterized protein"... 285 4.6e-25 1
UNIPROTKB|Q3T0Z8 - symbol:SNRPF "Small nuclear ribonucleo... 285 4.6e-25 1
UNIPROTKB|P62306 - symbol:SNRPF "Small nuclear ribonucleo... 285 4.6e-25 1
UNIPROTKB|F1SQR4 - symbol:SNRPF "Uncharacterized protein"... 285 4.6e-25 1
MGI|MGI:1917128 - symbol:Snrpf "small nuclear ribonucleop... 285 4.6e-25 1
RGD|1588229 - symbol:Snrpf "small nuclear ribonucleoprote... 285 4.6e-25 1
ZFIN|ZDB-GENE-040930-9 - symbol:snrpf "small nuclear ribo... 283 7.6e-25 1
WB|WBGene00004918 - symbol:snr-5 species:6239 "Caenorhabd... 282 9.7e-25 1
UNIPROTKB|P34659 - symbol:snr-5 "Probable small nuclear r... 282 9.7e-25 1
UNIPROTKB|J9NRX2 - symbol:J9NRX2 "Uncharacterized protein... 264 7.8e-23 1
GENEDB_PFALCIPARUM|PF11_0280 - symbol:PF11_0280 "small nu... 244 1.0e-20 1
UNIPROTKB|Q8II94 - symbol:PF11_0280 "Small nuclear ribonu... 244 1.0e-20 1
POMBASE|SPBC3E7.14 - symbol:smf1 "Sm snRNP core protein S... 239 3.5e-20 1
DICTYBASE|DDB_G0278821 - symbol:snrpF "putative small nuc... 222 2.2e-18 1
ASPGD|ASPL0000063345 - symbol:AN10966 species:162425 "Eme... 208 6.7e-17 1
UNIPROTKB|D4AA39 - symbol:D4AA39 "Uncharacterized protein... 208 6.7e-17 1
UNIPROTKB|G4NHA4 - symbol:MGG_03895 "Small nuclear ribonu... 207 8.6e-17 1
SGD|S000006386 - symbol:SMX3 "Core Sm protein Sm F" speci... 193 2.6e-15 1
TAIR|locus:4010713621 - symbol:AT2G14285 "AT2G14285" spec... 178 1.0e-13 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 163 3.9e-12 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 162 5.0e-12 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 160 8.2e-12 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 160 8.2e-12 1
ZFIN|ZDB-GENE-040625-50 - symbol:lsm6 "LSM6 homolog, U6 s... 155 2.8e-11 1
TAIR|locus:2043969 - symbol:LSM6B "AT2G43810" species:370... 154 3.5e-11 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 153 4.5e-11 1
GENEDB_PFALCIPARUM|PF13_0142 - symbol:PF13_0142 "u6 snRNA... 153 4.5e-11 1
UNIPROTKB|Q8IE68 - symbol:PF13_0142 "Lsm6 homologue, puta... 153 4.5e-11 1
FB|FBgn0034564 - symbol:CG9344 species:7227 "Drosophila m... 150 9.4e-11 1
ASPGD|ASPL0000032943 - symbol:AN10719 species:162425 "Eme... 142 6.6e-10 1
DICTYBASE|DDB_G0275719 - symbol:lsm6 "putative U6 small n... 134 4.7e-09 1
UNIPROTKB|A4RQ29 - symbol:LSM6 "U6 snRNA-associated Sm-li... 127 2.6e-08 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 98 3.0e-05 1
SGD|S000002786 - symbol:LSM6 "Lsm (Like Sm) protein" spec... 85 0.00072 1
>FB|FBgn0000426 [details] [associations]
symbol:SmF "Small ribonucleoprotein particle protein SmF"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GeneTree:ENSGT00700000104493 KO:K11098
OMA:KWGHEYK EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2
UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297
DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:Q24297
PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314
KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426
InParanoid:Q24297 OrthoDB:EOG4DBRXC PhylomeDB:Q24297
GenomeRNAi:36314 NextBio:797873 Bgee:Q24297 GermOnline:CG16792
Uniprot:Q24297
Length = 88
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 55/75 (73%), Positives = 62/75 (82%)
Query: 71 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 130
MS +P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 131 LGEVLIRCNNILYIR 145
LGEVLIRCNN+LYI+
Sbjct: 61 LGEVLIRCNNVLYIK 75
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 49/67 (73%), Positives = 54/67 (80%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS +P NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE+I+G TG
Sbjct: 1 MSAGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGN 60
Query: 61 LGEVLIR 67
LGEVLIR
Sbjct: 61 LGEVLIR 67
>UNIPROTKB|F1Q0L5 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AAEX03009953
Ensembl:ENSCAFT00000010335 Uniprot:F1Q0L5
Length = 111
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 61/93 (65%), Positives = 68/93 (73%)
Query: 54 DGHCT-GKLGEVLIRSLTMSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYM 112
+G T G L R L ++ LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYM
Sbjct: 6 EGRTTAGSAASGLQRWLVVAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYM 65
Query: 113 NCQLASTEEIIDGHCTGKLGEVLIRCNNILYIR 145
N QLA+TEE IDG +G LGEVLIRCNN+LYIR
Sbjct: 66 NMQLANTEEYIDGALSGHLGEVLIRCNNVLYIR 98
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 28 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 87
Query: 65 LIR 67
LIR
Sbjct: 88 LIR 90
>UNIPROTKB|F1P4B8 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AADN02005953
IPI:IPI00574447 ProteinModelPortal:F1P4B8
Ensembl:ENSGALT00000018617 NextBio:20821146 Uniprot:F1P4B8
Length = 85
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 2 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 61
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 62 LIRCNNVLYIR 72
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 2 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 61
Query: 65 LIR 67
LIR
Sbjct: 62 LIR 64
>UNIPROTKB|Q3T0Z8 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
UniGene:Bt.24628 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 HOGENOM:HOG000223542
EMBL:BC102192 IPI:IPI00689386 RefSeq:NP_001181956.1
ProteinModelPortal:Q3T0Z8 SMR:Q3T0Z8 STRING:Q3T0Z8 PRIDE:Q3T0Z8
Ensembl:ENSBTAT00000021643 GeneID:615240 KEGG:bta:615240 CTD:6636
GeneTree:ENSGT00700000104493 InParanoid:Q3T0Z8 KO:K11098
OMA:KWGHEYK OrthoDB:EOG4TMR3P NextBio:20899519 Uniprot:Q3T0Z8
Length = 86
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>UNIPROTKB|P62306 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP;TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IMP] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471054 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG052369
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6636 KO:K11098 OMA:KWGHEYK OrthoDB:EOG4TMR3P EMBL:X85372
EMBL:CR456751 EMBL:AK311752 EMBL:BC002505 EMBL:BC063397
EMBL:BC128452 EMBL:BC128453 IPI:IPI00220528 PIR:S55053
RefSeq:NP_003086.1 UniGene:Hs.105465 ProteinModelPortal:P62306
SMR:P62306 DIP:DIP-31221N IntAct:P62306 MINT:MINT-1137229
STRING:P62306 PhosphoSite:P62306 DMDM:61237391 PaxDb:P62306
PeptideAtlas:P62306 PRIDE:P62306 Ensembl:ENST00000266735
GeneID:6636 KEGG:hsa:6636 UCSC:uc001tej.3 GeneCards:GC12P096252
HGNC:HGNC:11162 MIM:603541 neXtProt:NX_P62306 PharmGKB:PA36003
InParanoid:P62306 PhylomeDB:P62306 ChiTaRS:SNRPF
EvolutionaryTrace:P62306 GenomeRNAi:6636 NextBio:25853
PMAP-CutDB:P62306 ArrayExpress:P62306 Bgee:P62306 CleanEx:HS_SNRPF
Genevestigator:P62306 GermOnline:ENSG00000139343 Uniprot:P62306
Length = 86
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>UNIPROTKB|F1SQR4 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 CTD:6636
GeneTree:ENSGT00700000104493 KO:K11098 OMA:KWGHEYK EMBL:CU633406
RefSeq:NP_001177142.1 UniGene:Ssc.5241 ProteinModelPortal:F1SQR4
SMR:F1SQR4 PRIDE:F1SQR4 Ensembl:ENSSSCT00000000979 GeneID:100155855
KEGG:ssc:100155855 Uniprot:F1SQR4
Length = 86
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>MGI|MGI:1917128 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609 MGI:MGI:1917128
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 CTD:6636 KO:K11098 OMA:KWGHEYK
OrthoDB:EOG4TMR3P EMBL:AK008240 IPI:IPI00943994 RefSeq:NP_081522.1
UniGene:Mm.259642 ProteinModelPortal:P62307 SMR:P62307
STRING:P62307 PhosphoSite:P62307 PaxDb:P62307 PRIDE:P62307
Ensembl:ENSMUST00000020203 GeneID:69878 KEGG:mmu:69878
InParanoid:P62307 NextBio:330523 Bgee:P62307 CleanEx:MM_SNRPF
Genevestigator:P62307 Uniprot:P62307
Length = 86
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>RGD|1588229 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA;ISO] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
CTD:6636 GeneTree:ENSGT00700000104493 KO:K11098 OrthoDB:EOG4TMR3P
IPI:IPI00768974 RefSeq:NP_001119563.1 UniGene:Rn.14918 SMR:D4AAT4
Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737
UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4
Length = 86
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 55/71 (77%), Positives = 59/71 (83%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 48/63 (76%), Positives = 51/63 (80%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>ZFIN|ZDB-GENE-040930-9 [details] [associations]
symbol:snrpf "small nuclear ribonucleoprotein
polypeptide F" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040930-9
GO:GO:0005634 GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOVERGEN:HBG052369 HOGENOM:HOG000223542 CTD:6636
KO:K11098 OrthoDB:EOG4TMR3P EMBL:BC162363 EMBL:BC162369
EMBL:AY648838 IPI:IPI00513235 RefSeq:NP_001003881.1
UniGene:Dr.84144 STRING:Q6DRC1 GeneID:445404 KEGG:dre:445404
eggNOG:NOG237730 InParanoid:Q6DRC1 NextBio:20832108 Uniprot:Q6DRC1
Length = 86
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 54/71 (76%), Positives = 58/71 (81%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 47/63 (74%), Positives = 50/63 (79%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ KLKWG EYKG LVS DGYMN QLA+TEE +DG G LGEV
Sbjct: 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>WB|WBGene00004918 [details] [associations]
symbol:snr-5 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0000003 GO:GO:0003723 GO:GO:0040039 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 71 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 130
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 131 LGEVLIRCNNILYI 144
LGE+LIRCNN+LY+
Sbjct: 61 LGEILIRCNNVLYV 74
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 46/67 (68%), Positives = 51/67 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 61 LGEVLIR 67
LGE+LIR
Sbjct: 61 LGEILIR 67
>UNIPROTKB|P34659 [details] [associations]
symbol:snr-5 "Probable small nuclear ribonucleoprotein F"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0000003
GO:GO:0003723 GO:GO:0040039 GO:GO:0030529 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 71 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 130
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 131 LGEVLIRCNNILYI 144
LGE+LIRCNN+LY+
Sbjct: 61 LGEILIRCNNVLYV 74
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 46/67 (68%), Positives = 51/67 (76%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGK 60
MS P NPKPFLN LTGK V+CKLKWG EYKG+LV+ D YMN QLA EE IDG+ G
Sbjct: 1 MSAVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN 60
Query: 61 LGEVLIR 67
LGE+LIR
Sbjct: 61 LGEILIR 67
>UNIPROTKB|J9NRX2 [details] [associations]
symbol:J9NRX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GeneTree:ENSGT00700000104493 OMA:EMLLRNN
EMBL:AAEX03016702 Ensembl:ENSCAFT00000047358 Uniprot:J9NRX2
Length = 86
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 52/71 (73%), Positives = 56/71 (78%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPF N LTGK V KLKWG EY+G L S DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 135 LIRCNNILYIR 145
LIRCNN+LYIR
Sbjct: 63 LIRCNNVLYIR 73
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 45/63 (71%), Positives = 48/63 (76%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPF N LTGK V KLKWG EY+G L S DGYMN QLA+TEE IDG +G LGEV
Sbjct: 3 LPLNPKPFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEV 62
Query: 65 LIR 67
LIR
Sbjct: 63 LIR 65
>GENEDB_PFALCIPARUM|PF11_0280 [details] [associations]
symbol:PF11_0280 "small nuclear
ribonucleoprotein F, putative" species:5833 "Plasmodium falciparum"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 47/70 (67%), Positives = 51/70 (72%)
Query: 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 135
P NPKPFLN L G VI KLKWG EYKGIL S DGYMN +L + EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIF 66
Query: 136 IRCNNILYIR 145
+RCNNILYIR
Sbjct: 67 LRCNNILYIR 76
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 39/62 (62%), Positives = 43/62 (69%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKGIL S DGYMN +L + EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIF 66
Query: 66 IR 67
+R
Sbjct: 67 LR 68
>UNIPROTKB|Q8II94 [details] [associations]
symbol:PF11_0280 "Small nuclear ribonucleoprotein F,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 47/70 (67%), Positives = 51/70 (72%)
Query: 76 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 135
P NPKPFLN L G VI KLKWG EYKGIL S DGYMN +L + EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIF 66
Query: 136 IRCNNILYIR 145
+RCNNILYIR
Sbjct: 67 LRCNNILYIR 76
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 39/62 (62%), Positives = 43/62 (69%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVL 65
P NPKPFLN L G VI KLKWG EYKGIL S DGYMN +L + EE I G G LGE+
Sbjct: 7 PLNPKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIF 66
Query: 66 IR 67
+R
Sbjct: 67 LR 68
>POMBASE|SPBC3E7.14 [details] [associations]
symbol:smf1 "Sm snRNP core protein Smf1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609
PomBase:SPBC3E7.14 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GO:GO:0000395 KO:K11098
PIR:T40388 RefSeq:NP_596101.1 ProteinModelPortal:O59734 SMR:O59734
IntAct:O59734 STRING:O59734 PRIDE:O59734 EnsemblFungi:SPBC3E7.14.1
GeneID:2540330 KEGG:spo:SPBC3E7.14 OMA:EMLLRNN OrthoDB:EOG4GJ2ZZ
NextBio:20801459 Uniprot:O59734
Length = 78
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 43/70 (61%), Positives = 53/70 (75%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
+P NPKPFL L GK V+ +LKWG EYKG L S D YMN QL + EE++DG TG LGE+
Sbjct: 4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
Query: 135 LIRCNNILYI 144
LIRCNN+L++
Sbjct: 64 LIRCNNVLWV 73
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 39/63 (61%), Positives = 46/63 (73%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
+P NPKPFL L GK V+ +LKWG EYKG L S D YMN QL + EE++DG TG LGE+
Sbjct: 4 VPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEI 63
Query: 65 LIR 67
LIR
Sbjct: 64 LIR 66
>DICTYBASE|DDB_G0278821 [details] [associations]
symbol:snrpF "putative small nuclear
ribonucleoprotein F" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR016487
PIRSF:PIRSF006609 dictyBase:DDB_G0278821 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397
GO:GO:0003723 EMBL:AAFI02000024 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P54999 KO:K11098 OMA:KWGHEYK RefSeq:XP_641988.1
ProteinModelPortal:Q54XP2 STRING:Q54XP2 PRIDE:Q54XP2
EnsemblProtists:DDB0233199 GeneID:8621720 KEGG:ddi:DDB_G0278821
Uniprot:Q54XP2
Length = 91
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 44/68 (64%), Positives = 51/68 (75%)
Query: 79 PKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
PKPFL L GK + +LKWG EY+GIL S D YMN QLA+TEE IDG G LGEVLIR
Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIR 68
Query: 138 CNNILYIR 145
CNN+L++R
Sbjct: 69 CNNVLFVR 76
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 39/60 (65%), Positives = 43/60 (71%)
Query: 9 PKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
PKPFL L GK + +LKWG EY+GIL S D YMN QLA+TEE IDG G LGEVLIR
Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIR 68
>ASPGD|ASPL0000063345 [details] [associations]
symbol:AN10966 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676 GO:GO:0006396
GO:GO:0030529 EMBL:BN001304 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223542
OMA:KWGHEYK EnsemblFungi:CADANIAT00000721 Uniprot:C8VBV2
Length = 88
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 43/70 (61%), Positives = 47/70 (67%)
Query: 76 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
P NP+PFL G VI +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLV 64
Query: 135 LIRCNNILYI 144
LIRCNNIL++
Sbjct: 65 LIRCNNILWM 74
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 38/63 (60%), Positives = 40/63 (63%)
Query: 6 PCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
P NP+PFL G VI +LKWG EYKG L S D YMN L TEE IDG TG LG V
Sbjct: 5 PVNPRPFLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLV 64
Query: 65 LIR 67
LIR
Sbjct: 65 LIR 67
>UNIPROTKB|D4AA39 [details] [associations]
symbol:D4AA39 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 OrthoDB:EOG4TMR3P IPI:IPI00191860
PRIDE:D4AA39 Ensembl:ENSRNOT00000002290 Uniprot:D4AA39
Length = 83
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 44/71 (61%), Positives = 50/71 (70%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 134
LP NPKPFLN LTGK V+ +LK G EYK LVS DGYM+ QLA+ + GHC LGE
Sbjct: 3 LPLNPKPFLNGLTGKPVMVRLKRGTEYKDYLVSVDGYMDTQLANQKNTEMGHC---LGEA 59
Query: 135 LIRCNNILYIR 145
L RCNN+ YIR
Sbjct: 60 LKRCNNVPYIR 70
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/63 (60%), Positives = 43/63 (68%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEV 64
LP NPKPFLN LTGK V+ +LK G EYK LVS DGYM+ QLA+ + GHC LGE
Sbjct: 3 LPLNPKPFLNGLTGKPVMVRLKRGTEYKDYLVSVDGYMDTQLANQKNTEMGHC---LGEA 59
Query: 65 LIR 67
L R
Sbjct: 60 LKR 62
>UNIPROTKB|G4NHA4 [details] [associations]
symbol:MGG_03895 "Small nuclear ribonucleoprotein F"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K11098 RefSeq:XP_003719981.1 ProteinModelPortal:G4NHA4
EnsemblFungi:MGG_03895T0 GeneID:2677482 KEGG:mgr:MGG_03895
Uniprot:G4NHA4
Length = 88
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 39/72 (54%), Positives = 50/72 (69%)
Query: 75 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 133
+P NP+P L L K V +LKWG EYKG LVS D YMN QL++ +E ID G LG+
Sbjct: 4 MPVNPRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQ 63
Query: 134 VLIRCNNILYIR 145
+LIRCNN+L++R
Sbjct: 64 ILIRCNNVLWVR 75
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 5 LPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGE 63
+P NP+P L L K V +LKWG EYKG LVS D YMN QL++ +E ID G LG+
Sbjct: 4 MPVNPRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQ 63
Query: 64 VLIR 67
+LIR
Sbjct: 64 ILIR 67
>SGD|S000006386 [details] [associations]
symbol:SMX3 "Core Sm protein Sm F" species:4932
"Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 SGD:S000006386 INTERPRO:IPR001163 GO:GO:0005682
GO:GO:0003723 EMBL:BK006949 GO:GO:0000398 EMBL:U25842
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GeneTree:ENSGT00700000104493
KO:K11098 OMA:KWGHEYK OrthoDB:EOG4GJ2ZZ EMBL:X82778 EMBL:AY558049
PIR:S55055 RefSeq:NP_015508.1 PDB:1N9R PDB:1N9S PDBsum:1N9R
PDBsum:1N9S ProteinModelPortal:P54999 SMR:P54999 DIP:DIP-1634N
IntAct:P54999 MINT:MINT-391069 STRING:P54999 PaxDb:P54999
PeptideAtlas:P54999 EnsemblFungi:YPR182W GeneID:856312
KEGG:sce:YPR182W CYGD:YPR182w EvolutionaryTrace:P54999
NextBio:981688 Genevestigator:P54999 GermOnline:YPR182W
Uniprot:P54999
Length = 86
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 42/79 (53%), Positives = 48/79 (60%)
Query: 68 SLTMSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGH 126
S +S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G
Sbjct: 4 SSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGV 63
Query: 127 CTGKLGEVLIRCNNILYIR 145
G LGE+ IRCNN+LYIR
Sbjct: 64 SHGTLGEIFIRCNNVLYIR 82
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/68 (50%), Positives = 39/68 (57%)
Query: 1 MSTPLPCNPKPFLNLLTGKSVICKLKWGH-EYKGILVSTDGYMNCQLASTEEIIDGHCTG 59
+S P NPKPFL L V KLK+ EY+G LVSTD Y N QL EE + G G
Sbjct: 7 ISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHG 66
Query: 60 KLGEVLIR 67
LGE+ IR
Sbjct: 67 TLGEIFIR 74
>TAIR|locus:4010713621 [details] [associations]
symbol:AT2G14285 "AT2G14285" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223542 KO:K11098 EMBL:AK220634
IPI:IPI00846292 RefSeq:NP_001077889.1 UniGene:At.49527
ProteinModelPortal:Q570S3 SMR:Q570S3 STRING:Q570S3
EnsemblPlants:AT2G14285.1 GeneID:5007874 KEGG:ath:AT2G14285
ProtClustDB:CLSN2699068 Genevestigator:Q570S3 Uniprot:Q570S3
Length = 61
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/46 (69%), Positives = 36/46 (78%)
Query: 100 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNILYIR 145
EYKG L S D YMN QL +TEE IDG TG LGE+LIRCNN+LY+R
Sbjct: 2 EYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVR 47
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/38 (68%), Positives = 28/38 (73%)
Query: 30 EYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
EYKG L S D YMN QL +TEE IDG TG LGE+LIR
Sbjct: 2 EYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 39
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/67 (49%), Positives = 40/67 (59%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
Query: 138 CNNILYI 144
NN+LYI
Sbjct: 66 GNNVLYI 72
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
NP FL + GK V+ KL G +Y+GIL DGYMN L TEE +G K G+ IR
Sbjct: 6 NPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIR 65
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
+P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+ IR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 138 CNNILYI 144
NN+LY+
Sbjct: 64 GNNVLYV 70
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FLN + GK V+ +L G +YKGIL DGYMN L TEE ++G T G+ IR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 139 NNILYI 144
NN+LYI
Sbjct: 68 NNVLYI 73
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIR 66
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 139 NNILYI 144
NN+LYI
Sbjct: 68 NNVLYI 73
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P FL + G+ V+ KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIR 66
>ZFIN|ZDB-GENE-040625-50 [details] [associations]
symbol:lsm6 "LSM6 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040625-50 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493
EMBL:BX324156 EMBL:BC072549 IPI:IPI00851796 RefSeq:NP_001002077.1
UniGene:Dr.81719 STRING:Q6IMW9 Ensembl:ENSDART00000053773
Ensembl:ENSDART00000147458 GeneID:415167 KEGG:dre:415167
InParanoid:Q6IMW9 NextBio:20818839 Uniprot:Q6IMW9
Length = 80
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDAFLRG 67
Query: 139 NNILYI 144
NN+LYI
Sbjct: 68 NNVLYI 73
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P FL + G+ V+ KL G +Y+G+L DGYMN + TEE ++G K G+ +R
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDAFLR 66
>TAIR|locus:2043969 [details] [associations]
symbol:LSM6B "AT2G43810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC002333 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 EMBL:BT008305 EMBL:AK227857
EMBL:AK317095 IPI:IPI00538248 PIR:G84870 RefSeq:NP_001078052.1
RefSeq:NP_181909.1 UniGene:At.36842 ProteinModelPortal:O22823
SMR:O22823 STRING:O22823 PRIDE:O22823 EnsemblPlants:AT2G43810.1
EnsemblPlants:AT2G43810.2 GeneID:818985 KEGG:ath:AT2G43810
TAIR:At2g43810 InParanoid:O22823 OMA:YISTTKG PhylomeDB:O22823
ProtClustDB:CLSN2683093 ArrayExpress:O22823 Genevestigator:O22823
Uniprot:O22823
Length = 91
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 139 NNILYI 144
NN+LYI
Sbjct: 75 NNVLYI 80
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P FL + GK V+ KL G +Y+GIL DGYMN + TEE ++G G+ +R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVR 73
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRC 138
P FL + G+ V+ KL G +Y+G L DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 139 NNILYI 144
NN+LYI
Sbjct: 75 NNVLYI 80
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 9 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
P FL + G+ V+ KL G +Y+G L DGYMN + TEE ++G K G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
>GENEDB_PFALCIPARUM|PF13_0142 [details] [associations]
symbol:PF13_0142 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
+PK F+ L G++VI +L G +YKGIL D MN L TEE DG T K + IR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
Query: 138 CNNILYIR 145
NN+ YIR
Sbjct: 65 GNNVFYIR 72
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+PK F+ L G++VI +L G +YKGIL D MN L TEE DG T K + IR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
>UNIPROTKB|Q8IE68 [details] [associations]
symbol:PF13_0142 "Lsm6 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 OMA:YISTSTK
HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
+PK F+ L G++VI +L G +YKGIL D MN L TEE DG T K + IR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
Query: 138 CNNILYIR 145
NN+ YIR
Sbjct: 65 GNNVFYIR 72
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+PK F+ L G++VI +L G +YKGIL D MN L TEE DG T K + IR
Sbjct: 5 SPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDAFIR 64
>FB|FBgn0034564 [details] [associations]
symbol:CG9344 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005688 "U6 snRNP"
evidence=NAS] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0005681
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P54999 KO:K12625 OMA:YISTSTK GeneTree:ENSGT00700000104493
EMBL:AY113474 RefSeq:NP_611528.1 UniGene:Dm.18844 SMR:Q9W2P5
IntAct:Q9W2P5 MINT:MINT-967510 STRING:Q9W2P5
EnsemblMetazoa:FBtr0071520 GeneID:37372 KEGG:dme:Dmel_CG9344
UCSC:CG9344-RA FlyBase:FBgn0034564 InParanoid:Q9W2P5
OrthoDB:EOG45DV65 GenomeRNAi:37372 NextBio:803315 Uniprot:Q9W2P5
Length = 79
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 82 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 141
F+N + G+ V KL G +Y+G+L DGYMN L TEE ++G K G+ IR NN+
Sbjct: 10 FINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGNNV 69
Query: 142 LYI 144
LYI
Sbjct: 70 LYI 72
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
F+N + G+ V KL G +Y+G+L DGYMN L TEE ++G K G+ IR
Sbjct: 10 FINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIR 65
>ASPGD|ASPL0000032943 [details] [associations]
symbol:AN10719 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0030490
"maturation of SSU-rRNA" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001305 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:YISTSTK HOGENOM:HOG000223542
EnsemblFungi:CADANIAT00003251 Uniprot:C8VFC9
Length = 80
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
+P FL + G V KL G YKG L S DGYMN L ++E + G T G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGDAFIR 70
Query: 138 CNNILYI 144
NN+LYI
Sbjct: 71 GNNVLYI 77
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L ++E + G T G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGDAFIR 70
>DICTYBASE|DDB_G0275719 [details] [associations]
symbol:lsm6 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0275719
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000013
GO:GO:0008033 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 RefSeq:XP_643590.1 HSSP:P54999
ProteinModelPortal:Q552U1 STRING:Q552U1 EnsemblProtists:DDB0233198
GeneID:8620177 KEGG:ddi:DDB_G0275719 KO:K12625 OMA:EQTEEYL
Uniprot:Q552U1
Length = 88
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 82 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIRCNNI 141
F + G+ V+ KL G EY+GIL DG MN + TEE ++G K G+ +R NN+
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNNV 79
Query: 142 LYI 144
LYI
Sbjct: 80 LYI 82
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 12 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
F + G+ V+ KL G EY+GIL DG MN + TEE ++G K G+ +R
Sbjct: 20 FFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLR 75
>UNIPROTKB|A4RQ29 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003723
GO:GO:0008033 GO:GO:0000932 EMBL:CM001231 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12625 RefSeq:XP_003710600.1
ProteinModelPortal:A4RQ29 STRING:A4RQ29 EnsemblFungi:MGG_05701T0
GeneID:2676106 KEGG:mgr:MGG_05701 OrthoDB:EOG4CC7B6 Uniprot:A4RQ29
Length = 83
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 78 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 137
+P FL + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
Query: 138 CNNILYI 144
NN++YI
Sbjct: 73 GNNVMYI 79
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/60 (40%), Positives = 29/60 (48%)
Query: 8 NPKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKLGEVLIR 67
+P FL + G V KL G YKG L S DGYMN L EE + G G+ +R
Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVR 72
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 79 PKPFLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEII-DGHCTGKLGEVLIR 137
P LN G+ ++ +LK G + G L + D YMN L + DG +L E IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 138 CNNILYIR 145
NNI Y+R
Sbjct: 63 GNNIKYLR 70
>SGD|S000002786 [details] [associations]
symbol:LSM6 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030490 "maturation of SSU-rRNA"
evidence=IMP] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] SGD:S000002786 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0008033 EMBL:U28373 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0030490 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 OrthoDB:EOG4CC7B6 HOGENOM:HOG000223542 PIR:S61173
RefSeq:NP_010666.2 ProteinModelPortal:Q06406 SMR:Q06406
DIP:DIP-1418N IntAct:Q06406 MINT:MINT-403097 STRING:Q06406
PaxDb:Q06406 PeptideAtlas:Q06406 EnsemblFungi:YDR378C GeneID:851984
KEGG:sce:YDR378C OMA:FMNVALS NextBio:970136 Genevestigator:Q06406
GermOnline:YDR378C Uniprot:Q06406
Length = 86
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 82 FLNLLTGKSVICKLKWGHEYKGILVSTDGYMNCQLASTEEIIDGHCTGKL-----GEVLI 136
FL+ + GK+V KL G Y G L S DG+MN L+S E + + KL +V +
Sbjct: 15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESN-NNKLLNKFNSDVFL 73
Query: 137 RCNNILYI 144
R ++YI
Sbjct: 74 RGTQVMYI 81
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.450 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 158 145 0.00071 103 3 11 22 0.46 31
30 0.49 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 547 (58 KB)
Total size of DFA: 135 KB (2082 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 14.26u 0.08s 14.34t Elapsed: 00:00:38
Total cpu time: 14.27u 0.08s 14.35t Elapsed: 00:00:39
Start: Thu Aug 15 13:44:50 2013 End: Thu Aug 15 13:45:29 2013