BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9936
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 142 PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
PY A + +G + +W+ Q + H++ + ++++ G Y+AT D +L IW
Sbjct: 185 PYFASVGW---DGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Query: 202 DVRNLEGPLNTFRTRTPINNLAFS---QRGLLATSRG----NIVEFLKPP--EINFEPRR 252
D+ NL P F + IN +AF+ Q + T +G N++ K P I EP
Sbjct: 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPIT 300
Query: 253 KANKAGG 259
KA G
Sbjct: 301 KAEGQKG 307
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 111 EGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQK----- 165
EG+ W+ + IV+ FS K +N + + G R+ TV +W ++
Sbjct: 18 EGHSDWVTS----IVAGFSQK--------ENEDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
Query: 166 --PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR 204
P +L H + +A++ + +S+ D LR+WD+R
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKT 150
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 151 LPAHSDPVSAVHFNRDGSLIVS 172
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 193
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 194 VKFSPNGKYILAATLDNTLKL 214
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVS 162
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 219
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 220 VKFSPNGKYILAATLDNTLKL 240
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKT 166
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 167 LPAHSDPVSAVHFNRDGSLIVS 188
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 148 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 197
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 198 VKFSPNGKYILAATLDNTLKL 218
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVS 166
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 197
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 198 VKFSPNGKYILAATLDNTLKL 218
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVS 166
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 221
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 222 VKFSPNGKYILAATLDNTLKL 242
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKT 168
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 169 LPAHSDPVSAVHFNRDGSLIVS 190
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 150 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT 147
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS 169
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA +S + + GK S K +S + + + +
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT 147
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS 169
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 214
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 215 VKFSPNGKYILAATLDNTLKL 235
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 102
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVS 183
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 143 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 198
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 199 VKFSPNGKYILAATLDNTLKL 219
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVS 167
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 126
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 127 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ + L T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKT 147
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS 169
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 196
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 197 VKFSPNGKYILAATLDNTLKL 217
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVS 165
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 124
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 125 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 202
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 203 VKFSPNGKYILAATLDNTLKL 223
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVS 171
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 130
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 131 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVS 172
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
K L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSF 203
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 204 VKFSPNGKYILAATLDNTLKL 224
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 58/141 (41%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ +
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 213 FRTRTPINNLAFSQRGLLATS 233
P++ + F++ G L S
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVS 172
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 131
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D GK + A +S + N + I +G +W + L
Sbjct: 132 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGNIVEF 240
+ FS G +LA + N ++
Sbjct: 201 VKFSPNGKYILAATLDNTLKL 221
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ L T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKT 147
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS 169
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
LL +AS++ L D S GK + + NP + I G + +V +W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF--RTRTPINN 221
L +L H + +V N G+ + +S+ D RIWD + + L T P++
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSF 200
Query: 222 LAFSQRG--LLATSRGN 236
+ FS G +LA + N
Sbjct: 201 VKFSPNGKYILAATLDN 217
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
V+ ++F P LA++S + + GK S K +S + + + +
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+ T+ +W + K L +L H + N + + + D +RIWDV+ L T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKT 147
Query: 213 FRTRT-PINNLAFSQRGLLATS 233
+ P++ + F++ G L S
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS 169
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 8/155 (5%)
Query: 54 VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
+ D+ W + A D + I+D + CLK L N V F P L+ +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
S + + D G + A +S + N + I +G +W + L
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 169 SLLCH-KAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+L+ + V + G Y+ + D+ L++WD
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
G R+ T+ MW + L +L+ H ++ V + G ++ + A D LR+WD +N
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/80 (17%), Positives = 37/80 (46%)
Query: 128 FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT 187
S + ++ + +P + + + T+ +W +L H +Q ++ +H+G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 188 YMATSAGDSQLRIWDVRNLE 207
+A+ + D +++WD + E
Sbjct: 164 LLASCSADMTIKLWDFQGFE 183
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/112 (16%), Positives = 50/112 (44%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
VTR+ F P ++ +ASE+ + D G + ++ + +
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR 204
+ T+ +W + + ++ H + SV++ G ++ +++ D +++W+V+
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE----- 207
+ T +WS + PL L H ++ A + T +AT + ++RIW+V N E
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171
Query: 208 GPLNTFRTRTP---INNLAFSQRGLLATSRGNIVEF 240
PL+ T + +L FS G + S G +++
Sbjct: 1172 APLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKW 1207
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+GTV +W+ +CH+ + S ++H T ++++ D +IW +L PL+
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF-DLLLPLHE 1128
Query: 213 FRTRTP-INNLAFS-QRGLLATSRGN 236
R + AFS LLAT N
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDN 1154
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+P N + V +W+ + +A H + + V + G+ TS+ D +R+
Sbjct: 855 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Query: 201 WDVRNL 206
W+ + +
Sbjct: 915 WETKKV 920
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 128 FSAKKGKLSVMTQNPYNACICL-----GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
FS + L++ + CI L G R G++++ + + Q L H + + S++
Sbjct: 251 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSF 309
Query: 183 NHTGTYMATSAGDSQLRIWDVRNLE 207
N +G + ++ D +LR WDV+ E
Sbjct: 310 NDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 128 FSAKKGKLSVMTQNPYNACICL-----GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
FS + L++ + CI L G R G++++ + + Q L H + + S++
Sbjct: 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSF 299
Query: 183 NHTGTYMATSAGDSQLRIWDVRNLE 207
N +G + ++ D +LR WDV+ E
Sbjct: 300 NDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+GTV +W+ + CH+ + S A++ T ++++ D +IW +L PL+
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF-DLLSPLHE 1129
Query: 213 FRTRTP-INNLAFSQRG-LLATSRGN 236
+ + AFS G LLAT N
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDN 1155
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVA 181
G+I DF+ +G + + + T +WS + PL L H ++ A
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1141
Query: 182 VNHTGTYMATSAGDSQLRIWDVRN 205
+ G +AT + ++RIW+V +
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSD 1165
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 105 LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSV--MTQNPYNACICLGHRNGTVTMWSPT 162
+AT S + + D++ GK+V + +++ T + + G + + +W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
++ ++ H + + +A+ + D LR+WDVR+
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 108 ASEEG-----YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL-GHR------NGT 155
A +EG YL W++ K +S + T Y+AC G R + T
Sbjct: 591 AKQEGDTGRLYLEWINKKTIKNLSRLVVRP-----HTDAVYHACFSQDGQRIASCGADKT 645
Query: 156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL-NTFR 214
+ ++ + L + H+ + A + +Y+AT + D +++IWD + G L +T+
Sbjct: 646 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYD 703
Query: 215 TRTP-INNLAFSQRG---LLATSRGNIVEFLKPPEIN 247
+ +N F+ + LLAT + FLK ++N
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDF--FLKLWDLN 738
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
+ ++S +P+ + G +G + + + +S + HK ++ + G + +
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 192 SAGDSQLRIWD 202
S+ DS +++W+
Sbjct: 1028 SSEDSVIQVWN 1038
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+PY+ + V +W+ + +A H + + V + G+ T++ D +R+
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 201 WDVRNL 206
W+ + +
Sbjct: 916 WETKKV 921
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNT 212
+GTV +W+ + CH+ + S A++ T ++++ D +IW +L PL+
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF-DLLSPLHE 1122
Query: 213 FRTRTP-INNLAFSQRG-LLATSRGN 236
+ + AFS G LLAT N
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDN 1148
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%)
Query: 105 LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQ 164
L + S +G + + G+I DF+ +G + + + T +WS +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
PL L H ++ A + G +AT + ++RIW+V +
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 105 LATASEEGYLSWLDTSIGKIVSDFSAKKGKLSV--MTQNPYNACICLGHRNGTVTMWSPT 162
+AT S + + D++ GK+V + +++ T + + G + + +W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
++ ++ H + + +A+ + D LR+WDVR+
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 108 ASEEG-----YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL-GHR------NGT 155
A +EG YL W++ K +S + T Y+AC G R + T
Sbjct: 584 AKQEGDTGRLYLEWINKKTIKNLSRLVVRP-----HTDAVYHACFSQDGQRIASCGADKT 638
Query: 156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL-NTFR 214
+ ++ + L + H+ + A + +Y+AT + D +++IWD + G L +T+
Sbjct: 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYD 696
Query: 215 TRTP-INNLAFSQRG---LLATSRGNIVEFLKPPEIN 247
+ +N F+ + LLAT + FLK ++N
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDF--FLKLWDLN 731
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/71 (16%), Positives = 34/71 (47%)
Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
+ ++S +P+ + G +G + + + +S + HK ++ + G + +
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 192 SAGDSQLRIWD 202
S+ DS +++W+
Sbjct: 1021 SSEDSVIQVWN 1031
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+PY+ + V +W+ + +A H + + V + G+ T++ D +R+
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 201 WDVRNL 206
W+ + +
Sbjct: 909 WETKKV 914
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGP---LNTFRTRTPIN 220
K L +L HK + VA+N ++AT++ D ++IWD+R + G L + R P+N
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300
Query: 221 NLAFSQRG--LLATSR 234
FS G LL T +
Sbjct: 301 AACFSPDGARLLTTDQ 316
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGP---LNTFRTRTPIN 220
K L +L HK + VA+N ++AT++ D ++IWD+R + G L + R P+N
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300
Query: 221 NLAFSQRG--LLATSR 234
FS G LL T +
Sbjct: 301 AACFSPDGARLLTTDQ 316
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGT-YMATSAGDSQLRIWDVRNLEGP---LNTFRTRTPIN 220
K L +L HK + VA+N ++AT++ D ++IWD+R + G L + R P+N
Sbjct: 242 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 301
Query: 221 NLAFSQRG--LLATSR 234
FS G LL T +
Sbjct: 302 AACFSPDGARLLTTDQ 317
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 125 VSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSP------TVQKPLASLL-CHKAGI 177
V D +A K + + P+ + + G + TV++W+ T + L +++ H+ +
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 178 QSVAVNHTGTYMATSAGDSQLRIWD 202
+ VA ++ G Y+AT + D + IW+
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWE 135
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
SV T + + + G + T+ +W K L L H I S +H +++ D
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 196 SQLRIWDVRNLE 207
+ +RIWD+ N E
Sbjct: 332 TTIRIWDLENGE 343
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 169 SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
SL H+ G+ SV ++HT A+S+ D+ +R+WD+ N
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Query: 96 MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGT 155
+ F P LAT + G ++ GK + + + +P + G +G
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 156 VTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVR--NLEGPLNTF 213
+ ++ K L +L H I+S+ + + T++ D ++I+DV+ NL G L+
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 214 RTRTPINNLAF 224
+ + N+AF
Sbjct: 248 ASW--VLNVAF 256
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 82 IELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQN 141
+E H L V++ V LP + A++S + ++ D GK + A + +
Sbjct: 76 LEGHQLGVVS-VDISHTLP---IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 142 PYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
P + + G G V ++ K SL I S+A + G Y+A+ A D + I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 202 DVRNLEGPLNTFRTRT-PINNLAFS 225
D+ + L+T PI +L FS
Sbjct: 192 DIATGK-LLHTLEGHAMPIRSLTFS 215
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 44/110 (40%)
Query: 93 VTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR 152
+ + F P LL TAS++GY+ D + S + + P +
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
+ +V +W + + + H+ + V N G+ + + D ++ I+D
Sbjct: 269 DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 83 ELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTS--IGKIVSDFSAKKGKLSVMTQ 140
+L CL N + + LP L E LS D + +I ++ ++ +
Sbjct: 90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+P + +G + +W Q + H G + +++ GT + T D+ +R
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 201 WDVR 204
WD+R
Sbjct: 210 WDLR 213
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 160 SPTVQKPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
S T KP + H A + ++ N + +AT + D + +WD+RNL+ L+TF +
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 160 SPTVQKPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
S T KP + H A + ++ N + +AT + D + +WD+RNL+ L+TF +
Sbjct: 261 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESH 318
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
SV T + + + G + T+ +W K L L H I S +H +++ D
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 196 SQLRIWDVRNLE 207
+ +RIWD+ N E
Sbjct: 332 TTIRIWDLENGE 343
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 160 SPTVQKPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
S KP S+ H A + ++ N + +AT + D + +WD+RNL+ L++F +
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
KP ++ H A + ++ N + +AT + D + +WD+RNL+ L++F +
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
KP ++ H A + ++ N + +AT + D + +WD+RNL+ L++F +
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 322
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGPLNTFRTR 216
KP ++ H A + ++ N + +AT + D + +WD+RNL+ L++F +
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 324
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 152 RNGTVTMWSPTVQK---------PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
R+ T+ W P + P L H A + VA+++ G + +++ D LR+W+
Sbjct: 36 RDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN 95
Query: 203 VRNLEGPLNTFRTRTPINNLAFS--QRGLLATSRGN 236
++N + + ++AFS R +++ R N
Sbjct: 96 LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDN 131
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 98 FLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVT 157
F P LAT +E+ + D KIV + + + P + G + TV
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 158 MWS-PTVQKPLASLLCHKAGIQSVAVN-HTGTYMATSAGDSQLRIWD 202
+W T Q L L + G+ +VAV+ G Y+A + D +R+WD
Sbjct: 191 IWDLRTGQCSLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 177 IQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
I+SV + G ++AT A D +RIWD+ N
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN 154
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 139 TQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTY------MATS 192
TQN + I G ++ V W PL L H+ + SVAV + + AT
Sbjct: 319 TQN--DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376
Query: 193 AGDSQLRIW 201
+GD + RIW
Sbjct: 377 SGDCKARIW 385
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+P + G + + +W +K + L H+ I S+ +G + + +GD +RI
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 201 WDVR 204
WD+R
Sbjct: 192 WDLR 195
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 173 HKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGP---LNTFRTRTPINNLAFS--- 225
HKA + N + MATS+ D+ +++WD+RN++ + P+N F+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 226 QRGLLATSRGNIV------EFLKPPEINFEPRRK 253
LL T + N + ++ KP +I P R+
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ 197
+ N I + TV +W+ + K ++L H + +VAV+ G+ A+ D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 198 LRIWDVRNLEG-PLNTFRTRTPINNLAFS-QRGLL--ATSRG---------NIVEFLKPP 244
+ +WD+ EG L + + I+ L FS R L AT G +IVE LK
Sbjct: 585 VLLWDLA--EGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK-- 640
Query: 245 EINFEPRRKANKAGGSVQRAKVKKIVRETA 274
+ + +A KA S A +K++ T+
Sbjct: 641 ---VDLKAEAEKADNSGPAATKRKVIYCTS 667
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 173 HKAGIQSVAVNHTGTY-MATSAGDSQLRIWDVRNLEGP---LNTFRTRTPINNLAFS--- 225
HKA + N + MATS+ D+ +++WD+RN++ + P+N F+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 226 QRGLLATSRGNIV------EFLKPPEINFEPRRK 253
LL T + N + ++ KP +I P R+
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 295
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 185 TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG 228
+G + +S+ D QL+IW V++ P R + ++A RG
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 103 FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT 162
F+L T EG + LD++ A +++ + P + ++ + +WS
Sbjct: 109 FILGTT--EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF-RTRTP--- 218
+L+ H+A + +A+ G + +++ D +R+W+ ++TF R P
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC-GTGTTIHTFNRKENPHDG 225
Query: 219 INNLAF---SQRGL--LATSRGNIVEF 240
+N++A + R L ++TS+ N +EF
Sbjct: 226 VNSIALFVGTDRQLHEISTSKKNNLEF 252
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 185 TGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG 228
+G + +S+ D QL+IW V++ P R + ++A RG
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 103 FLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPT 162
F+L T EG + LD++ A +++ + P + ++ + +WS
Sbjct: 112 FILGTT--EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 163 VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF-RTRTP--- 218
+L+ H+A + +A+ G + +++ D +R+W+ ++TF R P
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC-GTGTTIHTFNRKENPHDG 228
Query: 219 INNLAF---SQRGL--LATSRGNIVEF 240
+N++A + R L ++TS+ N +EF
Sbjct: 229 VNSIALFVGTDRQLHEISTSKKNNLEF 255
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
+V+ F +G + +LT +PD
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
+V+ F +G + +LT +PD
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 111 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
+V+ F +G + +LT +PD
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
+V+ F +G + +LT +PD
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
+V+ F +G + +LT +PD
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAG--IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL 210
+ +V +WS + L L + G I SVA G Y+A +++++WDV+ +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 211 NTFRTRTPINNLAFSQRGLLATSRGNIVEF 240
N + +L+++ L + SR +
Sbjct: 195 NMTSHSARVGSLSWNSYILSSGSRSGHIHH 224
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAG--IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL 210
+ +V +WS + L L + G I SVA G Y+A +++++WDV+ +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 211 NTFRTRTPINNLAFSQRGLLATSRGNIVEF 240
N + +L+++ L + SR +
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHH 213
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 17/151 (11%)
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFS 225
P+ S H +Q + G Y +++ D LR+WDV E ++ + ++
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 226 QRG--LLATSRGNIVEFLK---------------PPEINFEPRRKANKAGGSVQRAKVKK 268
++ +++ SR ++ ++ P KA+ ++ A K
Sbjct: 117 KKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 269 IVRETAKKDFIQSTKALGVKEIVKSLTGAPD 299
V+ F +G + +LT +PD
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 189 MATSAGDSQLRIWDVRNLEGPLNTF 213
+AT++ DS++++WDVR G L T
Sbjct: 202 LATASADSRVKLWDVRRASGCLITL 226
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 152 RNGTVTMWSPTVQK-----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV 203
R+ T+ MW T + P +L H + V ++ G + + + D LR+WD+
Sbjct: 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAG--IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPL 210
+ +V +WS + L L + G I SVA G Y+A +++++WDV+ +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 211 NTFRTRTPINNLAFSQRGLLATSR 234
N + +L+++ L + SR
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSR 127
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 152 RNGTVTMWSPTVQK-----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV 203
R+ T+ MW T + P +L H + V ++ G + + + D LR+WD+
Sbjct: 36 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 130 AKKGKLSVMTQNPYNAC--------ICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQ--S 179
A K K M N +AC I +GT +W + L S H A +
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD 203
Query: 180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTR-TPINNLAFSQRG 228
+A + TG + D + +WD+R+ + + F T + +N++ + G
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSG 252
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
H + SV+ N TGT ++++ D ++R+W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
H + SV+ N TGT ++++ D ++R+W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
H + SV+ N TGT ++++ D ++R+W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
H+ I +++ GT +AT + D ++I+DVRN
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,736,327
Number of Sequences: 62578
Number of extensions: 323528
Number of successful extensions: 1001
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 168
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)