RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9936
         (315 letters)



>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
           proteins that cover a wide variety of functions
           including adaptor/regulatory modules in signal
           transduction, pre-mRNA processing and cytoskeleton
           assembly; typically contains a GH dipeptide 11-24
           residues from its N-terminus and the WD dipeptide at its
           C-terminus and is 40 residues long, hence the name WD40;
           between GH and WD lies a conserved core; serves as a
           stable propeller-like platform to which proteins can
           bind either stably or reversibly; forms a propeller-like
           structure with several blades where each blade is
           composed of a four-stranded anti-parallel b-sheet;
           instances with few detectable copies are hypothesized to
           form larger structures by dimerization; each WD40
           sequence repeat forms the first three strands of one
           blade and the last strand in the next blade; the last
           C-terminal WD40 repeat completes the blade structure of
           the first WD40 repeat to create the closed ring
           propeller-structure; residues on the top and bottom
           surface of the propeller are proposed to coordinate
           interactions with other proteins and/or small ligands; 7
           copies of the repeat are present in this alignment.
          Length = 289

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 6/227 (2%)

Query: 12  GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME-EVYDIKWL-HLETMFAVA 69
           G+  + ++ +G+ L  G   G +  +D     L   +      V D+        + + +
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS 70

Query: 70  QKDWVYIYD-NQGIELHCLK-VLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSD 127
               + ++D   G  +  L    + V+ + F P   +L+++S +  +   D   GK ++ 
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130

Query: 128 FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT 187
                  ++ +  +P    +    ++GT+ +W     K +A+L  H   + SVA +  G 
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 188 YMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS 233
            + +S+ D  +++WD+   +  L T R     +N++AFS  G L  S
Sbjct: 191 KLLSSSSDGTIKLWDLSTGK-CLGTLRGHENGVNSVAFSPDGYLLAS 236



 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 6/170 (3%)

Query: 74  VYIYD-NQGIELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK 131
           + ++D   G  L  LK     V  +        LA+ S +  +   D   G+ V   +  
Sbjct: 33  IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH 92

Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
              +S +  +P    +    R+ T+ +W     K L +L  H   + SVA +  GT++A+
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 192 SAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG--LLATSRGNIV 238
           S+ D  +++WD+R  +  + T    T  +N++AFS  G  LL++S    +
Sbjct: 153 SSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201



 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 98  FLPYHFLLATASEEGYLS-WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
           F P    +A++S++G +  W D   GK V+  +   G+++ +  +P    +     +GT+
Sbjct: 143 FSPDGTFVASSSQDGTIKLW-DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201

Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFR-T 215
            +W  +  K L +L  H+ G+ SVA +  G  +A+ + D  +R+WD+R  E  + T    
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLSGH 260

Query: 216 RTPINNLAFSQRG 228
              + +LA+S  G
Sbjct: 261 TNSVTSLAWSPDG 273



 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 91  NKVTRMEFLPYHFLLATASEEG-YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL 149
             VT + F P   LLAT S +G    W D   G+++       G +  +  +     +  
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVW-DLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP 209
           G  + T+ +W     + + +L  H + + SVA +  G  +++S+ D  +++WDV   +  
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-C 127

Query: 210 LNTFRTRT-PINNLAFSQRGLLATS 233
           L T R  T  +N++AFS  G    S
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVAS 152



 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 7/154 (4%)

Query: 54  VYDIKWLHLETMFAVAQKD-WVYIYDNQGIELHCLKVL----NKVTRMEFLPYHFLLATA 108
           V  + +    T  A + +D  + ++D +  +  C+  L     +V  + F P    L ++
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 109 SEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLA 168
           S +G +   D S GK +      +  ++ +  +P    +  G  +GT+ +W     + + 
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ 255

Query: 169 SLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           +L  H   + S+A +  G  +A+ + D  +RIWD
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289



 Score = 36.9 bits (86), Expect = 0.009
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAF 224
              +L  H  G+  VA +  G  +AT +GD  +++WD+   E  L T +  T P+ ++A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-LLRTLKGHTGPVRDVAA 59

Query: 225 SQRG-LLATS 233
           S  G  LA+ 
Sbjct: 60  SADGTYLASG 69


>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
           only].
          Length = 466

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 50/276 (18%), Positives = 103/276 (37%), Gaps = 15/276 (5%)

Query: 19  TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM----EEVYDIKWLHLETMFAVA--QKD 72
           + +G  +LL           W   T    +  +    E V  + +     + A       
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 73  WVYIYD-NQGIELHCLKVLNK-VTRMEFLPY-HFLLATASEEGYLSWLDTSIGKIVSDFS 129
            + ++D   G  L  L      V+ + F P    L+A+ S +G +   D S GK++    
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWS-PTVQKPLASLLCHKAGIQSVAVNHTGTY 188
           +      V + +P  + +  G  +GT+ +W   +    L +L  H + + SVA +  G  
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298

Query: 189 MATSAGDSQLRIWDVRNLEGPLNTFRT--RTPINNLAFSQRG---LLATSRGNIVEFLKP 243
           +A+ + D  +R+WD+   +   +        P+++L+FS  G   +   S    +     
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Query: 244 PEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFI 279
                    + +    SV  +   ++V   +    +
Sbjct: 359 RTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394



 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 40/200 (20%), Positives = 83/200 (41%), Gaps = 13/200 (6%)

Query: 18  YTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVM----EEVYDIKWLHLETMFAVAQKD- 72
           ++ +G  L  G   G +  +D   ++ +  +  +      V  + +     + A    D 
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 73  WVYIYDNQGIELHCLKVL----NKVTRMEFLPYH-FLLATASEEGYLSWLDTSIGKIVSD 127
            V ++D +  +L     L      V+ + F P    L++  S++G +   D   GK +  
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 128 FSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGT 187
                  LSV   +P    +  G  +GTV +W  +    L +L  H + + S+  +  G 
Sbjct: 367 LEGHSNVLSVSF-SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425

Query: 188 YMATSAGDSQLRIWDVRNLE 207
            +A+ + D+ +R+WD++   
Sbjct: 426 SLASGSSDNTIRLWDLKTSL 445



 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 74  VYIYDNQGIELHCLKVLN----KVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
           + ++D +      L+ L+     V  + F P   LLA+ S +G +   D   GK++S  +
Sbjct: 265 IRLWDLRS-SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323

Query: 130 AK--KGKLSVMTQNPYNACICLG-HRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG 186
            K  +G +S ++ +P  + +  G   +GT+ +W     KPL +L  H   + SV+ +  G
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDG 382

Query: 187 TYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LLATSRGNIVEFLKPP 244
             +++ + D  +R+WD+       N     + + +L FS  G  L + S  N +      
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442



 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 25/202 (12%)

Query: 119 TSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHR-NGTVTMWSPTVQKPLASLLCHKAGI 177
           ++ GK++         ++ +  +P    +  G   +GT+ +W     KPL++L  H   +
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201

Query: 178 QSVAVNHTGTYMATSAG-DSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG--LLATSR 234
            S+A +  G  +  S   D  +R+WD+   +   +T    +     +FS  G  L + S 
Sbjct: 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS 261

Query: 235 GNIVEFLKPP-----------------EINFEPRRKANKAGGSVQRAKVKKIVRETAKKD 277
              +                        + F P  K   +G S    ++  +        
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL----ETGK 317

Query: 278 FIQSTKALGVKEIVKSLTGAPD 299
            + S    G +  V SL+ +PD
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPD 339


>gnl|CDD|197651 smart00320, WD40, WD40 repeats.  Note that these repeats are
           permuted with respect to the structural repeats (blades)
           of the beta propeller domain.
          Length = 40

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           + L +L  H   + SVA +  G Y+A+ + D  +++WD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40


>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat. 
          Length = 39

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
           K L +L  H   + SVA +  G  +A+ + D  +R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39


>gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB;
           Provisional.
          Length = 394

 Score = 30.7 bits (70), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 111 EGYLSWLDTSIGKIVS 126
           EGYL W++   G+ V+
Sbjct: 344 EGYLHWINREDGRFVA 359


>gnl|CDD|213811 TIGR03427, ABC_peri_uca, ABC transporter periplasmic binding
           protein, urea carboxylase region.  Members of this
           family are ABC transporter periplasmic binding proteins
           associated with the urea carboxylase/allophanate
           hydrolase pathway, an alternative to urease for urea
           degradation. The protein is restricted to bacteria with
           the pathway, with its gene close to the urea carboxylase
           and allophanate hydrolase genes. The substrate for this
           transporter therefore is likely to be urea or a compound
           from which urea is easily derived [Transport and binding
           proteins, Unknown substrate].
          Length = 328

 Score = 30.5 bits (69), Expect = 1.2
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 92  KVTRMEFLPYHFLLATASEEGYLSWLD-----TSIGKIVSDFSAKKGKLSVMTQNP 142
           KV  +E    H+LLA A E   LS  D     TS   IV+ F   K   +V+T NP
Sbjct: 108 KVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDADIVAAFIT-KDVTAVVTWNP 162


>gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester
           phosphodiesterase domain repeat 1 of
           glycerophosphodiester phosphodiesterase-like protein
           SHV3 and SHV3-like proteins.  This subfamily corresponds
           to the glycerophosphodiester phosphodiesterase domain
           (GDPD) repeat 1 present in glycerophosphodiester
           phosphodiesterase (GP-GDE)-like protein SHV3 and
           SHV3-like proteins (SVLs), which may play an important
           role in cell wall organization. The prototype of this
           family is a glycosylphosphatidylinositol (GPI) anchored
           protein SHV3 encoded by shaven3 (shv3) gene from
           Arabidopsis thaliana. Members in this family show
           sequence homology to bacterial GP-GDEs (EC 3.1.4.46)
           that catalyze the hydrolysis of various
           glycerophosphodiesters, and produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols.  Both, SHV3 and SVLs, have two tandemly
           repeated GDPD domains whose biochemical functions remain
           unclear. The residues essential for interactions with
           the substrates and calcium ions in bacterial GP-GDEs are
           not conserved in SHV3 and SVLs, which suggests that the
           function of GDPD domains in these proteins might be
           distinct from those in typical bacterial GP-GDEs. In
           addition, the two tandem repeats show low sequence
           similarity to each other, suggesting they have different
           biochemical function. Most of the members of this family
           are Arabidopsis-specific gene products. To date, SHV3
           orthologues are only found in Physcomitrella patens.
           This family includes domain I, the first GDPD domain of
           SHV3 and SVLs.
          Length = 299

 Score = 30.4 bits (69), Expect = 1.2
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 229 LLATSRGNIVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKALGVK 288
           LL+ S+   V+++  PE+ F         GG V R   K + R   K D   ST      
Sbjct: 149 LLSLSKTVKVDYISSPEVGF-----LKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQ-TYG 202

Query: 289 EIVKSLT 295
            I+K+LT
Sbjct: 203 SILKNLT 209


>gnl|CDD|233546 TIGR01725, phge_HK97_gp10, phage protein, HK97 gp10 family.  This
           model represents an uncharacterized, highly divergent
           bacteriophage family. The family includes gp10 from
           HK022 and HK97. It appears related to TIGR01635, a phage
           morphogenesis family believed to be involved in tail
           completion [Mobile and extrachromosomal element
           functions, Prophage functions].
          Length = 119

 Score = 28.2 bits (63), Expect = 3.1
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 245 EINFEPRRKANKAGGSVQRAKVKK--IVRETAKKDFIQSTKALGVKEIVKSLTGAPDKN 301
           +++ E  RKA KAG +V RAK+K    V +  K   ++ +        V S+T  P K 
Sbjct: 17  KVDKEKVRKALKAGANVIRAKLKSNAPVSKGKKHGSLRDSIVKQKDNGVLSVTVGPGKT 75


>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
          Length = 493

 Score = 28.3 bits (63), Expect = 6.3
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 92  KVTRMEFLPYHF-LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLG 150
           KV  + F P    +LA+A  +  ++  D   GK V        +++ +  N   + +C  
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186

Query: 151 HRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV--NHTGTYMATSAGDSQLR---IWDVRN 205
            ++  + +  P     ++S+  H +      +        +      SQ R   +WD R 
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246

Query: 206 LEGPLNT 212
           +  P +T
Sbjct: 247 MASPYST 253


>gnl|CDD|234817 PRK00704, PRK00704, photosystem I reaction center protein subunit
           XI; Provisional.
          Length = 160

 Score = 27.3 bits (61), Expect = 6.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 188 YMATSAGDSQLRIWDVRNLEGPLN--TFRTRTPINNLAFSQRGLLATSRG 235
           ++    GD       V NL  P+N   F T+  INNL   + GL    RG
Sbjct: 1   WVVPPVGDPC-----VGNLATPVNSSYF-TKAFINNLPIYRPGLSPNFRG 44


>gnl|CDD|234481 TIGR04141, TIGR04141, sporadically distributed protein, TIGR04141
           family.  This model describes a sporadically distributed
           conserved hypothetical protein in which complete members
           average over 500 amino acids in length, although
           matching sequences frequently are truncated or broken
           into tandem ORFs. Regular co-clustering with known
           markers of mobility (integrases, transposases, phage
           proteins, restriction enzymes, etc.) suggests this
           family also is part of the mobilome. The function is
           unknown.
          Length = 516

 Score = 28.0 bits (63), Expect = 8.0
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 12/52 (23%)

Query: 264 AKVKKIVRET----AKKDFIQSTKALGV--------KEIVKSLTGAPDKNPD 303
            K++ + + T    A+    QS++   V        ++I++S+TG P+ +  
Sbjct: 115 DKLRSLDKATLDDVARNTRSQSSRGSDVSEFGVDSDRDILRSVTGVPEDDVL 166


>gnl|CDD|145644 pfam02605, PsaL, Photosystem I reaction centre subunit XI.  This
           family consists of the photosystem I reaction centre
           subunit XI, PsaL, from plants and bacteria. PsaL is one
           of the smaller subunits in photosystem I with only two
           transmembrane alpha helices and interacts closely with
           PsaI.
          Length = 154

 Score = 27.3 bits (61), Expect = 8.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 188 YMATSAGDSQLRIWDVRNLEGPLNTFR-TRTPINNLAFSQRGLLATSRG 235
            +    GD       V NL  P+N+   T+  INNL   ++GL    RG
Sbjct: 3   VVKPYNGDPF-----VGNLATPVNSSPFTKAFINNLPAYRQGLSPLLRG 46


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,665,371
Number of extensions: 1439087
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 23
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)