RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9936
(315 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 70.1 bits (170), Expect = 3e-14
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 5/162 (3%)
Query: 46 CEMNVMEEVYDIKWLHLETMFAVAQKDW-VYIYD-NQGIELHCLKV-LNKVTRMEFLPYH 102
+V + +F D ++D +G+ + + + F P
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 103 FLLATASEEG--YLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWS 160
AT S++ L L + ++ ++ + + G+ + +W
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Query: 161 PTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
L H + + V G +AT + DS L+IW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 5e-04
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 13/208 (6%)
Query: 40 VRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD--WVYIYDNQGIELHCLKVLNK-VTRM 96
R+TL + ++Y + W + A +D + ++H + + + V
Sbjct: 47 TRRTLRGHLA---KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 97 EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKG---KLSVMTQNPYNACICLGHRN 153
+ P +A + S + + S + + + I +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 154 GTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTF 213
T +W + + H + S+++ + A D+ ++WDVR TF
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTF 222
Query: 214 RTRT-PINNLAFSQRG--LLATSRGNIV 238
IN + F G S
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATC 250
Score = 35.1 bits (79), Expect = 0.008
Identities = 10/62 (16%), Positives = 23/62 (37%)
Query: 165 KPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAF 224
+ +L H A I ++ + +++ D +L IWD + + A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 225 SQ 226
+
Sbjct: 106 AP 107
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 67.5 bits (163), Expect = 2e-13
Identities = 21/196 (10%), Positives = 60/196 (30%), Gaps = 1/196 (0%)
Query: 8 DLQFGIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLA-CEMNVMEEVYDIKWLHLETMF 66
D ++ + + + + + +A C + V+ + +
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
Query: 67 AVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVS 126
+ I + + L + S + + D S G +
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 127 DFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG 186
+ + + I + T+ +W ++ + +L H+ + S+ + T
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301
Query: 187 TYMATSAGDSQLRIWD 202
Y+ T + D +++W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317
Score = 65.1 bits (157), Expect = 1e-12
Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 23/160 (14%)
Query: 96 MEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL------ 149
+ L+A+ S + + + + ++ + + ++ P ++ +
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208
Query: 150 --------------GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
G R+ T+ MW + L +L+ H ++ V + G ++ + A D
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268
Query: 196 SQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRG-LLATS 233
LR+WD +N + T + +L F + + T
Sbjct: 269 KTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTG 307
Score = 44.3 bits (103), Expect = 8e-06
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT 217
W P +L H++ + V + + M +++ D+ +++WD + T + T
Sbjct: 3 WIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHT 59
Score = 44.0 bits (102), Expect = 1e-05
Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 5/167 (2%)
Query: 71 KDWVYIYDNQGIELHCLKV-LNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFS 129
K+W + E + L + VTR+ F P ++ +ASE+ + D G
Sbjct: 1 KEW----IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK 56
Query: 130 AKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM 189
+ ++ + + + T+ +W + + ++ H + SV++ G ++
Sbjct: 57 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116
Query: 190 ATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGN 236
+++ D +++W+V+ R + + +Q G L S N
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 163
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 63.3 bits (152), Expect = 7e-12
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 91 NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICL- 149
+ V + F + + S + + + SD +T + +
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314
Query: 150 -----------GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNH------TGTYMATS 192
G ++ V W PL L H+ + SVAV + AT
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374
Query: 193 AGDSQLRIWDVRNL 206
+GD + RIW + +
Sbjct: 375 SGDCKARIWKYKKI 388
Score = 43.2 bits (100), Expect = 2e-05
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 144 NACICLGHRNGTVTMWSPTVQK----PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLR 199
N +++P + + L L H + + V ++ G Y+AT + +
Sbjct: 28 VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQ 86
Query: 200 IWDVRNLE 207
++ V +
Sbjct: 87 VYRVSDGS 94
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 51.3 bits (121), Expect = 5e-08
Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 2/167 (1%)
Query: 37 FDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRM 96
+ DI + +G +L +++ +
Sbjct: 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
Query: 97 EFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTV 156
+ P LA E + L + + LS+ ++ +
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTGKDNLL 289
Query: 157 TMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDV 203
W + + + S ++ Y+ T +GD + +++V
Sbjct: 290 NAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 50.2 bits (118), Expect = 1e-07
Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 10/229 (4%)
Query: 12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTL------ACEMNVMEEVYDIKWLHLETM 65
I +G L++GG+ ++ +D T + +
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 66 FAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIV 125
V+ NQ + + + ++ L T +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQ 217
Query: 126 SDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHT 185
++ + P + +G + V + + L H++ + S+ +
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL-HVNKPDKYQLHLHESCVLSLKFAYC 276
Query: 186 GTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRG-LLATS 233
G + ++ D+ L W + + + + + S + T
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGA-SIFQSKESSSVLSCDISVDDKYIVTG 324
Score = 42.1 bits (97), Expect = 5e-05
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP--- 209
+ + P + + +L H + +V +++ ++ T G +++WD+ +
Sbjct: 31 DALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPV 88
Query: 210 --LNTFRTRTPINNLAFSQRG 228
L+ I + G
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDG 109
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 50.1 bits (118), Expect = 1e-07
Identities = 21/193 (10%), Positives = 47/193 (24%), Gaps = 7/193 (3%)
Query: 15 RMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWV 74
R +L+ G + + + ++ + + A +
Sbjct: 139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 198
Query: 75 YIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK 134
+ T F ATA +D GK + A +
Sbjct: 199 PHQSPRHEFSML------YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTE 252
Query: 135 LSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG 194
L + + + +K + + VA + G +
Sbjct: 253 LYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGT 311
Query: 195 DSQLRIWDVRNLE 207
+ L +++ LE
Sbjct: 312 FNDLAVFNPDTLE 324
Score = 32.0 bits (71), Expect = 0.081
Identities = 13/123 (10%), Positives = 27/123 (21%), Gaps = 8/123 (6%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSV-MTQNPYNACICL-GHRNGTVTMWSP 161
+ + L +D + + P N + + G +
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69
Query: 162 TVQKPLASLLC------HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT 215
K + S A++ G + + +Q L F T
Sbjct: 70 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129
Query: 216 RTP 218
Sbjct: 130 ADG 132
Score = 30.5 bits (67), Expect = 0.26
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 6/64 (9%)
Query: 180 VAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPIN--NLAFSQRG---LLATSR 234
A+ YM + + L + DV + + + + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 235 GNIV 238
+
Sbjct: 61 YGDI 64
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 49.9 bits (117), Expect = 1e-07
Identities = 32/202 (15%), Positives = 58/202 (28%), Gaps = 8/202 (3%)
Query: 18 YTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVYIY 77
Y K G F + + + V + +
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 78 DNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSW-LDTSIGKIVSDFSAKKGKLS 136
D + + + F+ L+A + + + D++ GK+ K S
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 137 VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTG----TYMATS 192
+ + S L SL HK + ++V G + T+
Sbjct: 291 SQRGLTARERFQNLDKKASSE-GSAAAGAGLDSL--HKNSVSQISVLSGGKAKCSQFCTT 347
Query: 193 AGDSQLRIWDVRNLEGPLNTFR 214
D + IWDVR+LE L +
Sbjct: 348 GMDGGMSIWDVRSLESALKDLK 369
Score = 47.2 bits (110), Expect = 1e-06
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKP--LASLLCHKAGIQSVAVNHTGTYMATSAGDSQL 198
N I + N V ++ + K + L H + V + T D
Sbjct: 16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75
Query: 199 RIWD 202
+W
Sbjct: 76 YVWT 79
Score = 42.2 bits (97), Expect = 5e-05
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 177 IQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG-PLNTFRTRT-PINNLAFSQRG-LLATS 233
I A N T +A + ++ I++ + ++ + + + ++ + T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 49.8 bits (117), Expect = 2e-07
Identities = 17/218 (7%), Positives = 47/218 (21%), Gaps = 24/218 (11%)
Query: 13 IYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD 72
+ + VA +D + ++ + W + +D
Sbjct: 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD 155
Query: 73 WVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG---------- 122
+ G + + + P + E +
Sbjct: 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215
Query: 123 ---KIVSDFSAKKGKLSVMTQNPYNACIC----------LGHRNGTVTMWSPTVQKPLAS 169
+ + G++++ + + + +
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275
Query: 170 LLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLE 207
+ SV V+ G+ + L +D LE
Sbjct: 276 VP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
Score = 27.1 bits (58), Expect = 3.1
Identities = 9/115 (7%), Positives = 29/115 (25%), Gaps = 18/115 (15%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACI--------CLGHRNGT 155
+ + L +DT + ++ P + +++ +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVI-----TIADAGPTPMVPMVAPGGRIAYATVNKSES 57
Query: 156 VTMWSPTVQKPLASLLCHKAGIQ-----SVAVNHTGTYMATSAGDSQLRIWDVRN 205
+ + L + + A++ G +A +L +
Sbjct: 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 47.1 bits (110), Expect = 1e-06
Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 10/225 (4%)
Query: 16 MNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKDWVY 75
+ + ++ G + + +D + + + A V
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 76 IYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKL 135
++D + + + + S + + D G + + +
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 220
Query: 136 SVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGI-QSVAVNHTGTYMATSAG 194
S M + G+ + TV +W + L +L + ++ TS+
Sbjct: 221 SGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 195 DSQLRIWDVRNLEGPLNTFRTRT------PINNLAFSQRGLLATS 233
D +++WD++ E + T + + S L+
Sbjct: 279 DGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Score = 39.4 bits (90), Expect = 4e-04
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 159 WSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT- 217
W K L H + + + G + + + D+ L++W + L T T
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58
Query: 218 PINNLAFS 225
+ +
Sbjct: 59 GVWSSQMR 66
Score = 31.3 bits (69), Expect = 0.13
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM 189
G + T+ +WS K L +L+ H G+ S +
Sbjct: 33 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 46.4 bits (108), Expect = 2e-06
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 172 CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG---PLNTFRTRTPINNLAFSQRG 228
K I + + + + + ++ D L ++ L + R + P+ F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Score = 40.6 bits (93), Expect = 2e-04
Identities = 7/70 (10%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 141 NPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRI 200
+P + + +G ++ W+ +K + + V + + + + D +
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKT 318
Query: 201 WDV--RNLEG 208
+ +E
Sbjct: 319 NAAIDQTIEL 328
Score = 28.3 bits (61), Expect = 1.3
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLC---HKAGIQS 179
+IV A K +S + P + + + +G++T++ +Q LL +K +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 180 VAVNHTGTYMATSAGDSQLRIW 201
+
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILK 83
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 45.0 bits (104), Expect = 5e-06
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPT--VQKPLASLLCHKAGIQSVAVNHTGTYMATSAGD 195
++ +P N + G + +V +W+ P+ H + + T + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 196 SQLRIWDV 203
S ++ W+V
Sbjct: 290 SNIKFWNV 297
Score = 40.4 bits (92), Expect = 1e-04
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT--RTPINNLAF 224
H I +++ + G + ++ + + WD+ F T I +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKT 63
Score = 30.7 bits (67), Expect = 0.21
Identities = 9/99 (9%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ 197
+ + ++ + S H A + V+ + +AT + D+
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 198 LRIWDVRNLEGPLNTFR---TRTPINNLAFSQRGLLATS 233
+ +W++ + + +N++ + + ++
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286
Score = 29.6 bits (64), Expect = 0.43
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
Query: 121 IGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLL-CHKAGIQS 179
+G I ++ ++ + + G + W + H I
Sbjct: 1 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 180 VAVNHTGTYMATSAGDSQLRIWDVRN 205
+ G S D L++
Sbjct: 61 IKTTSKGDLFTVS-WDDHLKVVPAGG 85
Score = 25.7 bits (54), Expect = 8.8
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 86 CLKVL----NKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQN 141
+V +T + L +A EG+++ D S G F + +
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 142 PYNACICLGHRNGTVTMWS 160
+ + + +
Sbjct: 64 TSKGDLFTVSWDDHLKVVP 82
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 44.6 bits (103), Expect = 6e-06
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 136 SVMTQNPYNACICLGHRNGTVTMWSP-TVQKPLASLLCHKAGIQSVAVNHTGTYMATSAG 194
+ + G + + ++S K + +L HK G+ ++ T + +S
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277
Query: 195 DSQLRIWDV 203
D+ ++ W+V
Sbjct: 278 DACIKRWNV 286
Score = 40.7 bits (93), Expect = 1e-04
Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQ 197
+ T + ++ A + +AT + D+
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 198 LRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLATS 233
+ I+ V+ + +NNL + L +S
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSS 275
Score = 36.9 bits (83), Expect = 0.002
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 164 QKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLA 223
+ L ++ H GI ++ VN + + + D ++ W ++ I +L
Sbjct: 3 DEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQD-----HSNLIVSLD 53
Query: 224 FSQRGLLA 231
S+ +
Sbjct: 54 NSKAQEYS 61
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 44.8 bits (104), Expect = 6e-06
Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 55 YDIKWLHLETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYL 114
++ + + + + + +++ E +K L+ + S + +
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 200
Query: 115 SWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMW---------SPTVQK 165
D G + + V N I G +G + +W +P
Sbjct: 201 RLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 166 PLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWD 202
L +L+ H + + + + +S+ D + IWD
Sbjct: 259 CLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
Score = 39.1 bits (89), Expect = 4e-04
Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 6/226 (2%)
Query: 12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVME-EVYDIKWLHLETMFAVAQ 70
G+Y + Y + + ++ G + + +D + V +++ + +
Sbjct: 17 GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 74
Query: 71 KDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSA 130
N G L+ L + ++ + + W S I
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 131 KKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMA 190
+ +V + + I + T+ +W+ + + + +L HK GI + +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 192
Query: 191 TSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSRGN 236
+ + D+ +R+WD+ L + + + +
Sbjct: 193 SGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFDNKRIVSGAYD 237
Score = 36.0 bits (81), Expect = 0.004
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 164 QKPLASLLCHKAGIQSV-AVNHTGTYMATSAGDSQLRIWDVRNLE 207
+ L + C + V + + + + D+ ++IWD LE
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE 46
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 44.1 bits (102), Expect = 1e-05
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 172 CHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLL 230
H + ++ + + S ++Q I+++R+ + I ++ F + L+
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338
Query: 231 ATS 233
A
Sbjct: 339 AAV 341
Score = 40.6 bits (93), Expect = 2e-04
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRT-PINNLAFSQRGLLA 231
H + + + Y+ T A D +R++D N + L + L ++ G+L
Sbjct: 11 HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGGILV 68
Query: 232 TS 233
+
Sbjct: 69 SG 70
Score = 33.7 bits (75), Expect = 0.024
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 147 ICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIW 201
+ G + + ++ +K L L H G+ ++ H G ++ S +
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80
Score = 32.2 bits (71), Expect = 0.078
Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Query: 104 LLATASEEGYLSWLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTV 163
+ T +++ + D+ K + S G + + +
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84
Query: 164 QKPLASLLCHKA-GIQSVAVNHTGTYMATSAGDSQLRIWDVRN 205
+ + Y+ T + D+ L +W +
Sbjct: 85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 43.7 bits (101), Expect = 2e-05
Identities = 13/207 (6%), Positives = 41/207 (19%), Gaps = 21/207 (10%)
Query: 14 YRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQKD- 72
+ G + +D + + Y +
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200
Query: 73 WVYIYDNQGIELHCLKVL---------NKVTRMEFLPYHFLLATASEEGYLSW-----LD 118
D + V + +P + + ++
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260
Query: 119 TSIGKIVSDFSAKKGKLSV--MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAG 176
G + L + A G + + +K + K
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNN 316
Query: 177 IQSVAVNHTGTYMATSAGDSQLRIWDV 203
+ + ++ + D ++ + +
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPL 343
Score = 27.9 bits (60), Expect = 1.6
Identities = 14/143 (9%), Positives = 34/143 (23%), Gaps = 1/143 (0%)
Query: 64 TMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASE-EGYLSWLDTSIG 122
+ A + +I D G + + ++ + + EG +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75
Query: 123 KIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAV 182
F G + M + + + + KP +A I +
Sbjct: 76 GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135
Query: 183 NHTGTYMATSAGDSQLRIWDVRN 205
+ ++A
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVM 158
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 39.9 bits (91), Expect = 3e-04
Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 9/236 (3%)
Query: 12 GIYRMNYTKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEEVYDIKWLHLETMFAVAQK 71
G R+ T H+L + + ++ H+
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139
Query: 72 DWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAK 131
+ + + + S + S
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199
Query: 132 KGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMAT 191
G L T + G + + + H + + + GT +A+
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDG----TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255
Query: 192 SAGDSQLRIWDVRNLEGPLNTFRTRTPINN----LAFSQRGLLATSRGNIVEFLKP 243
++ D ++IW+V L+ T T I + + ++++ L++ S + F+ P
Sbjct: 256 ASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 39.5 bits (90), Expect = 3e-04
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 116 WLDTSIGKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKA 175
+ T + A + ++ N +C +G + W ++ + +L H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332
Query: 176 GIQ----SVAVNHTGTYMATSAGDSQLRIWDVRNLE 207
I+ +AV+ G +A ++DV+ L+
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPG------VFDVKFLK 362
Score = 38.3 bits (87), Expect = 8e-04
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 173 HKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGP------LNTFRTRTPINNLAFSQ 226
H A I SV+ ++ + +GD L++WD + L+ + F ++ ++++ Q
Sbjct: 13 HDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 227 RGLLATSRGNIV 238
+V
Sbjct: 71 AIERDAFELCLV 82
Score = 38.3 bits (87), Expect = 9e-04
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRT-- 215
+ H + + S++ N +G + ++ D +LR WDV+ E + T
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHC 331
Query: 216 ---RTPINNLAFSQRG-LLATSRGNIVEFLK 242
+ LA + G LA V+FLK
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
Score = 26.4 bits (56), Expect = 5.7
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 46/175 (26%)
Query: 104 LLATASEEGYLS-W------LDTSIGKIVSDFSAKKGKLSVMT------QNPYNACICLG 150
+ S +GYL W + K S F K G V +
Sbjct: 26 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85
Query: 151 HRNGTVTMWSPTVQKPLASLLC----------HKAGIQSVAVNHTG-----TYMATSAGD 195
+G + + T + ++ K ++ + + +
Sbjct: 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 145
Query: 196 SQLRIWDV-----------------RNLEGPLNTFRTRT-PINNLAFSQRGLLAT 232
IW L+G + + T + ++ S+RGL+AT
Sbjct: 146 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIAT 200
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 39.1 bits (89), Expect = 4e-04
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHK--AGIQSVAVNHTGT-YMATSAG 194
+ + T+ +W T K + K G Q V V TG + + +
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316
Query: 195 DSQLRIWDV 203
D L +++
Sbjct: 317 DGTLNFYEL 325
Score = 32.6 bits (72), Expect = 0.053
Identities = 25/241 (10%), Positives = 61/241 (25%), Gaps = 28/241 (11%)
Query: 19 TKNGRHLLLGGKRGHVAAFDWVRKTLACEMNVMEE---------VYDIKW-------LHL 62
K ++L G + G V + W + + V + + DI W +
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133
Query: 63 ETMFAVAQKDWVYIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIG 122
+ N E+ ++ + + + +
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193
Query: 123 KIVSDF---SAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQS 179
SD V + + ++ + + L + + +Q
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253
Query: 180 V---AVNHTGTYMATSAGDSQLRIWDVRNLEGPLNTFRTRTP-----INNLAFSQRGLLA 231
AT D+ +R+WDV + + + + + G +
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRII 312
Query: 232 T 232
+
Sbjct: 313 S 313
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 36.3 bits (82), Expect = 0.003
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 137 VMTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM--ATSAG 194
+ + V + + LA I S+ V+ + A S G
Sbjct: 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTG 321
Query: 195 DSQLRIWDVRNLE 207
D L I D + E
Sbjct: 322 DKTLYIHDAESGE 334
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 35.3 bits (80), Expect = 0.006
Identities = 11/106 (10%), Positives = 25/106 (23%), Gaps = 9/106 (8%)
Query: 137 VMTQNPYNACICLGHRNGTVTMWSP-------TVQKPLASLLCHKAGIQSVAVNHTGTYM 189
+ A G R V ++ P ++ P A + + + +
Sbjct: 79 FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138
Query: 190 A-TSAGDSQLRIWDVRNLEGPLNTFRTRTPINNLAFSQRGLLATSR 234
G S V ++ + + + S
Sbjct: 139 LFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHIHPGAAATHYLGSC 183
Score = 33.4 bits (75), Expect = 0.032
Identities = 13/144 (9%), Positives = 25/144 (17%), Gaps = 13/144 (9%)
Query: 72 DWVYIYDNQGIELHCLKVLNKVTRMEFLPYH----------FLLATASEEGYLSWLDTSI 121
D+V ++D L R P LL + L
Sbjct: 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155
Query: 122 GKIVSDFSAKKGKLSVMTQNPYNACICLGHRNGTVTMWSPTVQKPLAS---LLCHKAGIQ 178
+ + + + + Q
Sbjct: 156 ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ 215
Query: 179 SVAVNHTGTYMATSAGDSQLRIWD 202
+ N+ G + A
Sbjct: 216 AAQANYPGMLVWAVASSILQGDIP 239
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 34.1 bits (76), Expect = 0.017
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM-ATSAGDS 196
+ + TV+M K A + +AV G + + +
Sbjct: 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCN 266
Query: 197 QLRIWDVRNLE 207
+ + D
Sbjct: 267 TVSVIDTATNT 277
Score = 33.7 bits (75), Expect = 0.021
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 150 GHRNGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYM-ATSAGDSQLRIWDVRN 205
+ +++ T K A++ ++ GT + +A + + I D
Sbjct: 8 NSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 31.5 bits (70), Expect = 0.13
Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG 208
G + + +K + + A + ++ +G Y+ D+++ + D+ E
Sbjct: 41 AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.9 bits (69), Expect = 0.19
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 153 NGTVTMWSPTVQKPLASLLCHKAGIQSVAVNHTGTYMATSAGDSQLRIWDVRNLEG 208
G + + + + L A + ++ +G Y+ D ++ + D+ E
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI,
PsaL {Synechococcus elongatus [TaxId: 32046]}
Length = 151
Score = 27.0 bits (60), Expect = 2.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 203 VRNLEGPLNTFR-TRTPINNLAFSQRGLLATSRGNIVE-------FLKPPEINFEPRRK- 253
V +L P++ +T I NL ++GL RG +E FL P + P R
Sbjct: 11 VGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRG--LEVGMAHGYFLIGPWVKLGPLRDS 68
Query: 254 --ANKAG 258
AN G
Sbjct: 69 DVANLGG 75
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 27.2 bits (59), Expect = 2.8
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 237 IVEFLKPPEINFEPRRKANKAGGSVQRAKVKKIVRETAKKDFIQSTKA 284
I E L P P + + + GS K VR A+K++ ++ +
Sbjct: 300 IAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRI 347
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 27.1 bits (58), Expect = 3.1
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 138 MTQNPYNACICLGHRNGTVTMWSPTVQKPLA--SLLCHKAGIQSVAVNHTGTYMATSAGD 195
+ Q Y A + + +W+ + L ++ +Q + V+ Y+
Sbjct: 2 LKQTVYIA----SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP 57
Query: 196 SQ-LRIWDV 203
+ + +
Sbjct: 58 EFRVLAYRI 66
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 26.5 bits (57), Expect = 5.2
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
Query: 158 MWSPTVQKPLASLLCHKAGIQSVAVNHTGT--YMATSAGDSQLRIWDVRNLEGPLNTFRT 215
+ S Q + + S+ + G ++ R++ +NL
Sbjct: 288 VNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIP 347
Query: 216 RTPINNLAFSQRGLLATSRGNIVEFLKP 243
N + L S I + P
Sbjct: 348 TAYGANPTLTAMSLAIKSCEYIKQNFTP 375
>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
{Clostridium thermocellum [TaxId: 1515]}
Length = 642
Score = 25.6 bits (56), Expect = 9.8
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 75 YIYDNQGIELHCLKVLNKVTRMEFLPYHFLLATASEEGYLSWLDTSIGKIVSDFSAKKGK 134
Y ++GI H ++ L + P + + T+ Y WL+ G + ++S +
Sbjct: 31 YFSPDEGIPYHSIETL-----IVEAPDYGHVTTSEAFSYYVWLEAMYGNLTGNWSGVETA 85
Query: 135 LSVM 138
VM
Sbjct: 86 WKVM 89
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 25.3 bits (54), Expect = 9.9
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 200 IWDVRNLEGPLNTFRTRTPINNLAFSQ----RGLLATSRGNIVEFLKPP 244
+ DVR L G + T P+N A + +G+ G ++ + PP
Sbjct: 356 VADVRVL-GAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLM-PP 402
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.407
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,166,007
Number of extensions: 51972
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 72
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)