Query psy9937
Match_columns 149
No_of_seqs 136 out of 1100
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 23:26:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 5E-21 1.1E-25 123.5 13.8 121 7-129 33-158 (160)
2 KOG0044|consensus 99.9 5.8E-21 1.3E-25 127.1 12.0 125 6-130 39-178 (193)
3 KOG0027|consensus 99.8 1.2E-19 2.6E-24 118.3 12.9 120 7-127 21-149 (151)
4 PTZ00183 centrin; Provisional 99.8 2.1E-17 4.5E-22 108.2 14.2 123 6-129 29-156 (158)
5 KOG0034|consensus 99.8 2.1E-17 4.6E-22 110.0 12.4 119 7-130 47-178 (187)
6 PTZ00184 calmodulin; Provision 99.8 7.3E-17 1.6E-21 104.4 13.5 120 6-126 23-147 (149)
7 KOG0037|consensus 99.7 4.6E-17 9.9E-22 108.6 11.8 133 6-144 69-207 (221)
8 KOG0028|consensus 99.7 5.2E-16 1.1E-20 98.7 13.0 122 6-128 45-171 (172)
9 COG5126 FRQ1 Ca2+-binding prot 99.7 7.8E-16 1.7E-20 99.5 12.0 104 27-131 14-124 (160)
10 KOG0027|consensus 99.7 7.1E-16 1.5E-20 100.5 11.6 112 31-142 8-136 (151)
11 PTZ00183 centrin; Provisional 99.6 3.2E-14 6.9E-19 93.0 12.3 97 32-128 18-119 (158)
12 KOG0031|consensus 99.6 1.3E-13 2.9E-18 87.3 13.3 117 6-127 44-165 (171)
13 PTZ00184 calmodulin; Provision 99.6 1.2E-13 2.7E-18 89.2 11.9 97 32-128 12-113 (149)
14 KOG0044|consensus 99.5 5.1E-13 1.1E-17 89.3 11.8 117 9-128 7-129 (193)
15 KOG0036|consensus 99.5 8.6E-13 1.9E-17 95.6 11.2 123 6-133 26-152 (463)
16 KOG0028|consensus 99.4 2.2E-12 4.7E-17 82.4 10.4 101 31-131 33-138 (172)
17 PF13499 EF-hand_7: EF-hand do 99.4 1E-12 2.2E-17 73.8 7.4 57 69-125 2-66 (66)
18 KOG0037|consensus 99.4 1.7E-11 3.6E-16 82.2 11.9 111 7-126 107-219 (221)
19 PLN02964 phosphatidylserine de 99.4 1E-11 2.3E-16 96.2 12.2 117 9-129 119-245 (644)
20 KOG0038|consensus 99.4 8.9E-12 1.9E-16 78.5 8.9 100 31-130 71-180 (189)
21 KOG0030|consensus 99.3 3.4E-11 7.4E-16 75.2 10.5 118 7-126 24-150 (152)
22 cd05022 S-100A13 S-100A13: S-1 99.3 1.7E-11 3.7E-16 72.5 7.1 62 67-128 8-76 (89)
23 PF13499 EF-hand_7: EF-hand do 99.3 1.7E-11 3.7E-16 68.8 6.3 61 33-93 2-66 (66)
24 KOG4223|consensus 99.2 8.9E-11 1.9E-15 82.9 8.8 120 6-125 175-303 (325)
25 KOG0031|consensus 99.2 7.1E-10 1.5E-14 70.6 11.0 97 31-131 32-133 (171)
26 KOG0377|consensus 99.2 3.2E-10 7E-15 83.2 10.5 99 31-129 464-617 (631)
27 cd05027 S-100B S-100B: S-100B 99.2 1.6E-10 3.6E-15 68.3 7.5 61 67-127 8-79 (88)
28 cd05026 S-100Z S-100Z: S-100Z 99.2 2.1E-10 4.5E-15 68.7 7.3 61 68-128 11-82 (93)
29 KOG0030|consensus 99.2 5.5E-10 1.2E-14 69.9 9.0 102 30-131 10-120 (152)
30 cd00052 EH Eps15 homology doma 99.1 2.8E-10 6E-15 63.8 6.6 57 71-127 3-61 (67)
31 cd00252 SPARC_EC SPARC_EC; ext 99.1 3.9E-10 8.5E-15 69.9 7.5 62 65-126 46-107 (116)
32 KOG0036|consensus 99.1 1.8E-09 3.8E-14 78.7 11.2 99 32-131 15-114 (463)
33 KOG0034|consensus 99.1 1.7E-09 3.7E-14 72.3 10.3 94 33-130 35-135 (187)
34 smart00027 EH Eps15 homology d 99.1 6.6E-10 1.4E-14 67.0 7.7 60 68-127 11-72 (96)
35 cd05025 S-100A1 S-100A1: S-100 99.1 7.8E-10 1.7E-14 66.1 7.8 61 67-127 9-80 (92)
36 cd05031 S-100A10_like S-100A10 99.1 1.3E-09 2.7E-14 65.5 7.8 60 68-127 9-79 (94)
37 cd05022 S-100A13 S-100A13: S-1 99.1 8.2E-10 1.8E-14 65.4 6.7 64 33-96 10-76 (89)
38 cd05029 S-100A6 S-100A6: S-100 99.0 2.8E-09 6E-14 63.1 7.6 59 70-128 13-80 (88)
39 cd00213 S-100 S-100: S-100 dom 99.0 3.1E-09 6.7E-14 63.0 7.8 60 68-127 9-79 (88)
40 cd00051 EFh EF-hand, calcium b 99.0 3.9E-09 8.4E-14 57.6 7.1 59 34-92 3-61 (63)
41 KOG4223|consensus 99.0 9.5E-09 2.1E-13 72.8 10.6 62 33-94 79-140 (325)
42 cd05023 S-100A11 S-100A11: S-1 99.0 3.8E-09 8.3E-14 62.6 7.3 61 68-128 10-81 (89)
43 cd00051 EFh EF-hand, calcium b 99.0 3.4E-09 7.4E-14 57.8 6.7 57 69-125 2-62 (63)
44 cd05027 S-100B S-100B: S-100B 99.0 5E-09 1.1E-13 62.0 7.6 64 33-96 10-80 (88)
45 cd00052 EH Eps15 homology doma 98.9 4.9E-09 1.1E-13 58.7 6.6 61 34-96 2-62 (67)
46 PF13833 EF-hand_8: EF-hand do 98.9 5.7E-09 1.2E-13 56.1 5.9 50 45-94 2-52 (54)
47 smart00027 EH Eps15 homology d 98.9 1.3E-08 2.9E-13 61.2 8.0 62 33-96 12-73 (96)
48 PF13833 EF-hand_8: EF-hand do 98.9 7.2E-09 1.6E-13 55.7 6.1 46 81-126 2-52 (54)
49 PLN02964 phosphatidylserine de 98.9 1.3E-08 2.9E-13 79.2 9.5 79 16-95 161-243 (644)
50 cd05026 S-100Z S-100Z: S-100Z 98.9 1.6E-08 3.4E-13 60.5 7.2 64 33-96 12-82 (93)
51 cd05025 S-100A1 S-100A1: S-100 98.9 2.1E-08 4.6E-13 59.9 7.7 66 31-96 9-81 (92)
52 cd05031 S-100A10_like S-100A10 98.8 2.5E-08 5.4E-13 59.8 7.6 65 32-96 9-80 (94)
53 cd00213 S-100 S-100: S-100 dom 98.8 6.8E-08 1.5E-12 57.2 7.8 65 32-96 9-80 (88)
54 KOG2643|consensus 98.8 4.7E-08 1E-12 71.9 8.3 118 8-131 300-457 (489)
55 cd05029 S-100A6 S-100A6: S-100 98.8 5.7E-08 1.2E-12 57.5 7.0 64 33-96 12-80 (88)
56 cd05030 calgranulins Calgranul 98.8 8E-08 1.7E-12 56.9 7.4 60 69-128 10-80 (88)
57 PF00036 EF-hand_1: EF hand; 98.7 1.8E-08 3.9E-13 46.9 3.6 26 101-126 2-27 (29)
58 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.1E-07 2.3E-12 59.0 7.7 58 32-93 49-106 (116)
59 PF14658 EF-hand_9: EF-hand do 98.7 9.1E-08 2E-12 52.8 5.9 60 36-95 3-64 (66)
60 PF00036 EF-hand_1: EF hand; 98.7 4.4E-08 9.6E-13 45.6 3.6 27 69-95 2-28 (29)
61 cd05023 S-100A11 S-100A11: S-1 98.7 1.8E-07 3.9E-12 55.4 7.0 64 33-96 11-81 (89)
62 KOG4666|consensus 98.7 2.4E-08 5.3E-13 70.9 3.6 104 28-131 256-363 (412)
63 KOG0751|consensus 98.6 1.9E-07 4E-12 69.9 7.5 121 5-131 85-211 (694)
64 PF14658 EF-hand_9: EF-hand do 98.6 1.9E-07 4.2E-12 51.5 5.7 57 71-127 2-64 (66)
65 KOG2643|consensus 98.5 4.9E-07 1.1E-11 66.7 7.6 121 6-129 211-348 (489)
66 cd05024 S-100A10 S-100A10: A s 98.5 9.1E-07 2E-11 52.2 7.3 55 72-127 13-76 (91)
67 KOG0040|consensus 98.5 7.6E-07 1.7E-11 73.9 9.2 92 33-125 2255-2359(2399)
68 PRK12309 transaldolase/EF-hand 98.5 2.2E-06 4.7E-11 63.7 10.7 57 63-128 330-386 (391)
69 KOG0041|consensus 98.5 2.3E-06 5.1E-11 57.1 9.0 94 33-126 101-202 (244)
70 cd05030 calgranulins Calgranul 98.4 1.7E-06 3.8E-11 51.1 6.7 64 33-96 10-80 (88)
71 KOG0038|consensus 98.3 1.3E-06 2.7E-11 55.5 5.2 95 2-96 77-178 (189)
72 KOG0041|consensus 98.3 3.1E-06 6.7E-11 56.5 6.9 64 67-130 99-166 (244)
73 PF14788 EF-hand_10: EF hand; 98.3 2.9E-06 6.3E-11 44.3 5.2 47 48-94 2-48 (51)
74 PRK12309 transaldolase/EF-hand 98.3 4.2E-06 9.1E-11 62.3 8.0 56 27-95 330-385 (391)
75 PF12763 EF-hand_4: Cytoskelet 98.3 4.7E-06 1E-10 50.7 6.8 61 67-128 10-72 (104)
76 PF10591 SPARC_Ca_bdg: Secrete 98.3 4.7E-06 1E-10 51.5 6.8 63 62-124 49-113 (113)
77 KOG2562|consensus 98.3 7E-06 1.5E-10 61.1 8.3 112 8-123 292-420 (493)
78 PF14788 EF-hand_10: EF hand; 98.2 6.4E-06 1.4E-10 43.0 5.7 45 83-127 1-49 (51)
79 PF13202 EF-hand_5: EF hand; P 98.2 2.1E-06 4.5E-11 38.5 3.2 21 103-123 3-23 (25)
80 KOG4251|consensus 98.2 5.3E-06 1.1E-10 57.2 6.2 64 32-95 102-168 (362)
81 KOG0377|consensus 98.2 8.8E-06 1.9E-10 60.5 7.6 65 32-96 548-616 (631)
82 PF13405 EF-hand_6: EF-hand do 98.2 3.1E-06 6.8E-11 39.9 3.6 24 71-94 4-27 (31)
83 PF13202 EF-hand_5: EF hand; P 98.2 3.4E-06 7.4E-11 37.8 3.2 23 70-92 2-24 (25)
84 cd05024 S-100A10 S-100A10: A s 98.2 9.5E-06 2.1E-10 47.9 5.9 30 67-96 48-77 (91)
85 PF13405 EF-hand_6: EF-hand do 98.1 6.6E-06 1.4E-10 38.8 3.4 27 100-126 1-27 (31)
86 PF12763 EF-hand_4: Cytoskelet 97.9 9.1E-05 2E-09 45.1 6.9 63 31-96 10-72 (104)
87 KOG4251|consensus 97.8 0.00015 3.2E-09 50.3 7.6 116 11-126 216-344 (362)
88 KOG1029|consensus 97.7 0.00035 7.5E-09 55.5 9.3 61 67-127 195-257 (1118)
89 KOG2562|consensus 97.7 0.00012 2.6E-09 54.8 6.4 93 33-128 280-380 (493)
90 KOG4065|consensus 97.7 0.00015 3.2E-09 44.4 5.6 59 66-124 66-142 (144)
91 KOG3555|consensus 97.6 0.00024 5.3E-09 51.3 6.2 98 34-131 214-314 (434)
92 KOG0751|consensus 97.6 0.0027 5.9E-08 48.3 11.3 89 40-128 45-137 (694)
93 KOG0040|consensus 97.5 0.0013 2.8E-08 55.9 10.4 118 6-125 2265-2396(2399)
94 KOG0046|consensus 97.4 0.00077 1.7E-08 51.4 7.3 56 72-128 24-86 (627)
95 PF09279 EF-hand_like: Phospho 97.4 0.0008 1.7E-08 39.1 5.5 64 69-133 2-75 (83)
96 smart00054 EFh EF-hand, calciu 97.4 0.00032 7E-09 31.3 3.1 25 102-126 3-27 (29)
97 KOG0169|consensus 97.3 0.0034 7.4E-08 49.9 9.9 101 29-130 134-235 (746)
98 PF05042 Caleosin: Caleosin re 97.3 0.004 8.6E-08 41.1 8.7 93 32-125 8-164 (174)
99 KOG4347|consensus 97.3 0.0019 4.1E-08 50.5 7.9 78 11-89 535-612 (671)
100 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00016 3.4E-09 44.8 1.8 60 30-91 53-112 (113)
101 smart00054 EFh EF-hand, calciu 97.2 0.00068 1.5E-08 30.2 3.5 25 70-94 3-27 (29)
102 KOG0046|consensus 96.7 0.012 2.5E-07 45.3 7.4 63 33-96 21-86 (627)
103 PF09069 EF-hand_3: EF-hand; 96.5 0.046 9.9E-07 32.3 7.5 61 67-130 3-78 (90)
104 KOG0169|consensus 96.2 0.18 3.9E-06 40.6 11.8 120 7-131 149-278 (746)
105 PF09279 EF-hand_like: Phospho 96.2 0.026 5.6E-07 32.7 5.8 63 33-96 2-70 (83)
106 KOG4666|consensus 96.2 0.018 3.8E-07 41.8 5.6 65 66-130 258-327 (412)
107 KOG1955|consensus 96.0 0.02 4.4E-07 43.8 5.5 61 67-127 231-293 (737)
108 KOG4065|consensus 95.9 0.064 1.4E-06 33.1 6.3 67 27-93 63-143 (144)
109 KOG4578|consensus 95.8 0.0073 1.6E-07 43.7 2.3 63 68-130 334-401 (421)
110 PLN02952 phosphoinositide phos 95.5 0.19 4E-06 40.0 9.3 83 44-127 13-110 (599)
111 PF05042 Caleosin: Caleosin re 95.2 0.11 2.3E-06 34.5 5.9 62 69-130 9-127 (174)
112 KOG3866|consensus 95.1 0.08 1.7E-06 38.3 5.5 24 103-126 300-323 (442)
113 KOG4347|consensus 95.1 0.053 1.1E-06 42.8 5.0 73 48-121 535-612 (671)
114 PF05517 p25-alpha: p25-alpha 94.6 0.078 1.7E-06 34.7 4.4 90 33-133 1-96 (154)
115 KOG1029|consensus 93.1 0.15 3.3E-06 41.3 4.1 62 33-96 197-258 (1118)
116 KOG2243|consensus 92.9 0.23 5E-06 43.1 5.0 56 72-127 4062-4120(5019)
117 KOG1955|consensus 92.4 0.4 8.7E-06 37.0 5.4 63 32-96 232-294 (737)
118 PF12174 RST: RCD1-SRO-TAF4 (R 92.2 0.72 1.6E-05 25.9 5.0 59 46-107 7-66 (70)
119 KOG1265|consensus 91.9 6 0.00013 33.2 11.4 81 48-131 205-303 (1189)
120 PF05517 p25-alpha: p25-alpha 91.7 1.5 3.2E-05 28.7 6.8 49 11-60 19-70 (154)
121 KOG0035|consensus 91.4 1.5 3.3E-05 36.4 7.9 90 33-123 749-848 (890)
122 KOG4286|consensus 91.1 0.78 1.7E-05 37.3 5.8 96 33-131 472-584 (966)
123 KOG3555|consensus 91.1 0.31 6.6E-06 35.9 3.4 61 32-96 251-311 (434)
124 KOG4578|consensus 90.2 0.24 5.2E-06 36.2 2.2 64 33-96 335-399 (421)
125 KOG0039|consensus 90.2 1 2.2E-05 36.4 5.9 63 64-127 15-89 (646)
126 KOG0042|consensus 89.8 0.68 1.5E-05 36.5 4.5 63 69-131 595-661 (680)
127 KOG4301|consensus 88.6 2.9 6.4E-05 30.9 6.7 93 33-131 112-219 (434)
128 PLN02952 phosphoinositide phos 87.9 1.8 3.9E-05 34.6 5.7 50 80-130 13-68 (599)
129 PF08726 EFhand_Ca_insen: Ca2+ 87.4 0.33 7.1E-06 27.2 1.1 54 66-123 5-65 (69)
130 PF14513 DAG_kinase_N: Diacylg 87.4 3.2 7E-05 26.6 5.7 69 9-80 6-82 (138)
131 PF14513 DAG_kinase_N: Diacylg 85.9 5.9 0.00013 25.5 6.4 63 48-112 8-82 (138)
132 PF08414 NADPH_Ox: Respiratory 85.1 4.3 9.2E-05 24.5 5.0 61 33-98 32-95 (100)
133 KOG0042|consensus 84.0 4 8.6E-05 32.5 5.7 64 33-96 595-658 (680)
134 PF09068 EF-hand_2: EF hand; 83.6 7.2 0.00016 24.6 6.0 28 33-60 43-72 (127)
135 PF02761 Cbl_N2: CBL proto-onc 82.8 7.4 0.00016 22.8 5.5 52 45-96 20-71 (85)
136 KOG1707|consensus 82.3 13 0.00027 29.9 7.9 29 99-127 315-343 (625)
137 KOG4004|consensus 82.1 0.6 1.3E-05 31.8 0.7 56 72-127 192-250 (259)
138 PLN02228 Phosphoinositide phos 81.8 8.8 0.00019 30.7 7.0 59 67-127 24-92 (567)
139 KOG0035|consensus 80.7 7.1 0.00015 32.7 6.3 63 67-129 747-818 (890)
140 PLN02222 phosphoinositide phos 80.1 11 0.00024 30.3 7.0 58 68-127 26-90 (581)
141 KOG1265|consensus 80.1 15 0.00033 31.0 7.8 81 11-95 205-299 (1189)
142 PF12174 RST: RCD1-SRO-TAF4 (R 78.8 4.2 9E-05 22.9 3.3 47 83-129 8-55 (70)
143 PF08414 NADPH_Ox: Respiratory 77.7 11 0.00023 22.8 4.9 64 68-133 31-98 (100)
144 KOG1707|consensus 77.5 4.2 9.1E-05 32.4 4.0 62 31-96 315-378 (625)
145 PF08976 DUF1880: Domain of un 77.3 3 6.5E-05 25.9 2.6 32 96-127 4-35 (118)
146 PLN02230 phosphoinositide phos 73.8 20 0.00044 28.9 7.0 60 67-127 29-102 (598)
147 PF09069 EF-hand_3: EF-hand; 73.8 16 0.00035 21.6 7.8 62 32-96 4-76 (90)
148 PRK00523 hypothetical protein; 72.6 7.6 0.00016 21.9 3.2 27 48-74 40-66 (72)
149 KOG3866|consensus 71.6 6.3 0.00014 28.9 3.4 87 49-143 225-312 (442)
150 KOG0998|consensus 71.4 2.7 5.8E-05 35.2 1.8 61 67-127 283-345 (847)
151 KOG1264|consensus 70.7 61 0.0013 27.6 8.9 123 10-133 160-299 (1267)
152 COG3763 Uncharacterized protei 70.2 10 0.00023 21.2 3.4 29 47-75 38-66 (71)
153 PF03672 UPF0154: Uncharacteri 69.8 8.7 0.00019 21.2 3.0 28 47-74 31-58 (64)
154 PF00404 Dockerin_1: Dockerin 69.6 7.8 0.00017 16.2 2.4 14 42-55 2-15 (21)
155 PLN02228 Phosphoinositide phos 66.2 38 0.00083 27.3 7.0 66 29-96 22-93 (567)
156 PRK01844 hypothetical protein; 65.9 12 0.00025 21.2 3.0 28 48-75 39-66 (72)
157 KOG0998|consensus 64.6 2.7 5.7E-05 35.2 0.5 62 33-96 285-346 (847)
158 KOG1954|consensus 64.6 10 0.00022 28.9 3.4 54 70-124 447-502 (532)
159 PF09068 EF-hand_2: EF hand; 62.6 37 0.00079 21.5 6.3 57 70-126 44-124 (127)
160 PF02761 Cbl_N2: CBL proto-onc 61.7 30 0.00066 20.2 4.8 46 82-127 21-70 (85)
161 KOG4004|consensus 61.5 3.8 8.1E-05 28.1 0.7 47 45-93 202-248 (259)
162 KOG1785|consensus 55.9 93 0.002 24.0 7.3 84 45-128 188-275 (563)
163 PLN02223 phosphoinositide phos 54.8 68 0.0015 25.7 6.5 60 67-127 16-92 (537)
164 PLN02230 phosphoinositide phos 54.8 83 0.0018 25.6 7.1 66 29-95 27-102 (598)
165 PF12419 DUF3670: SNF2 Helicas 53.2 51 0.0011 21.1 4.9 46 80-125 80-139 (141)
166 cd06404 PB1_aPKC PB1 domain is 52.9 35 0.00076 19.9 3.6 21 97-117 57-77 (83)
167 TIGR01848 PHA_reg_PhaR polyhyd 52.0 54 0.0012 20.1 5.2 19 40-58 12-30 (107)
168 PLN02222 phosphoinositide phos 52.0 98 0.0021 25.1 7.1 63 32-96 26-91 (581)
169 PLN02508 magnesium-protoporphy 51.3 94 0.002 23.3 6.3 83 29-112 39-123 (357)
170 KOG2871|consensus 49.3 11 0.00025 28.4 1.5 61 65-125 307-372 (449)
171 PF11363 DUF3164: Protein of u 48.9 85 0.0018 21.5 6.3 46 63-108 115-161 (195)
172 COG4103 Uncharacterized protei 48.2 75 0.0016 20.6 6.6 12 83-94 82-93 (148)
173 PF05872 DUF853: Bacterial pro 47.4 1.4E+02 0.0029 23.7 6.9 100 11-121 106-221 (502)
174 KOG2243|consensus 47.2 45 0.00098 30.4 4.7 61 35-96 4061-4121(5019)
175 PF03979 Sigma70_r1_1: Sigma-7 47.1 32 0.0007 19.7 3.0 13 46-58 20-32 (82)
176 PF09107 SelB-wing_3: Elongati 43.8 28 0.00061 18.1 2.1 17 5-21 5-21 (50)
177 cd08324 CARD_NOD1_CARD4 Caspas 42.4 71 0.0015 18.7 5.1 48 44-96 26-73 (85)
178 PF13929 mRNA_stabil: mRNA sta 42.3 1.4E+02 0.003 22.0 7.3 127 9-139 108-262 (292)
179 cd00074 H2A Histone 2A; H2A is 42.2 63 0.0014 20.1 3.9 48 67-116 57-104 (115)
180 PF08355 EF_assoc_1: EF hand a 41.7 68 0.0015 18.3 3.7 29 41-69 12-40 (76)
181 PF09373 PMBR: Pseudomurein-bi 41.7 31 0.00067 16.0 1.9 16 113-128 2-17 (33)
182 CHL00185 ycf59 magnesium-proto 40.9 1.1E+02 0.0024 22.9 5.4 82 29-111 39-122 (351)
183 PF07879 PHB_acc_N: PHB/PHA ac 40.9 27 0.00057 19.3 1.8 24 106-129 10-33 (64)
184 KOG4286|consensus 40.8 2.3E+02 0.0049 24.1 8.7 84 32-115 421-522 (966)
185 TIGR02029 AcsF magnesium-proto 39.0 1.1E+02 0.0024 22.7 5.2 82 29-111 33-116 (337)
186 PF11829 DUF3349: Protein of u 38.4 90 0.0019 18.8 4.6 57 48-104 20-81 (96)
187 PRK13654 magnesium-protoporphy 37.8 1.3E+02 0.0028 22.6 5.3 82 29-111 43-126 (355)
188 PF01023 S_100: S-100/ICaBP ty 37.2 58 0.0013 16.3 3.9 14 81-94 22-35 (44)
189 KOG2871|consensus 36.0 24 0.00053 26.7 1.6 64 30-93 308-372 (449)
190 PF08671 SinI: Anti-repressor 35.8 51 0.0011 15.1 2.1 24 100-126 4-27 (30)
191 PF13075 DUF3939: Protein of u 35.5 17 0.00037 23.3 0.6 18 79-96 37-54 (140)
192 cd01047 ACSF Aerobic Cyclase S 33.6 1.9E+02 0.0042 21.4 5.6 82 29-111 23-106 (323)
193 smart00414 H2A Histone 2A. 33.6 75 0.0016 19.4 3.2 49 67-117 46-94 (106)
194 KOG0039|consensus 33.3 1.9E+02 0.0042 23.8 6.3 79 11-96 4-90 (646)
195 KOG1954|consensus 33.2 66 0.0014 24.8 3.4 56 34-92 447-502 (532)
196 PHA02335 hypothetical protein 31.9 1.1E+02 0.0023 18.8 3.6 31 5-42 19-49 (118)
197 PF11116 DUF2624: Protein of u 31.5 1.1E+02 0.0025 17.9 7.4 12 11-22 15-26 (85)
198 KOG4070|consensus 30.7 54 0.0012 21.5 2.3 62 47-108 33-107 (180)
199 PF03556 Cullin_binding: Culli 30.1 1.4E+02 0.003 18.5 6.5 92 33-126 26-117 (117)
200 PRK09430 djlA Dna-J like membr 29.8 2.1E+02 0.0047 20.5 8.7 83 6-96 67-157 (267)
201 KOG0506|consensus 28.8 3.1E+02 0.0066 22.0 6.5 62 35-96 90-159 (622)
202 KOG3442|consensus 26.1 1.4E+02 0.003 18.9 3.4 14 69-82 80-93 (132)
203 KOG0506|consensus 25.9 1.4E+02 0.003 23.7 4.1 59 69-127 88-158 (622)
204 PF12238 MSA-2c: Merozoite sur 25.8 2.3E+02 0.0051 19.6 4.8 31 66-96 83-114 (205)
205 cd01612 APG12_C Ubiquitin-like 25.7 91 0.002 18.2 2.5 15 46-60 24-38 (87)
206 PF10437 Lip_prot_lig_C: Bacte 25.7 1.4E+02 0.003 17.0 4.4 40 86-125 44-86 (86)
207 PF10668 Phage_terminase: Phag 25.5 97 0.0021 16.8 2.4 26 70-96 10-35 (60)
208 PF09693 Phage_XkdX: Phage unc 25.4 42 0.00091 16.4 0.9 16 6-21 8-23 (40)
209 PTZ00017 histone H2A; Provisio 25.2 1.2E+02 0.0026 19.5 3.1 50 67-118 64-113 (134)
210 PF05099 TerB: Tellurite resis 25.2 1.8E+02 0.0038 18.1 5.2 84 44-127 36-126 (140)
211 PF12872 OST-HTH: OST-HTH/LOTU 24.0 1.3E+02 0.0029 16.2 5.6 36 45-92 21-56 (74)
212 PRK00819 RNA 2'-phosphotransfe 23.2 1.7E+02 0.0037 19.7 3.8 32 43-74 29-60 (179)
213 KOG1264|consensus 22.7 2.7E+02 0.0057 24.1 5.3 96 33-129 146-251 (1267)
214 PF09336 Vps4_C: Vps4 C termin 22.5 1.4E+02 0.0031 16.1 3.4 24 47-70 29-52 (62)
215 PLN00153 histone H2A; Provisio 22.1 1.6E+02 0.0034 18.8 3.2 50 67-118 61-110 (129)
216 cd07313 terB_like_2 tellurium 21.7 1.8E+02 0.004 17.0 8.0 13 8-20 13-25 (104)
217 PF09066 B2-adapt-app_C: Beta2 21.6 79 0.0017 19.1 1.9 44 80-127 3-47 (114)
218 COG5562 Phage envelope protein 21.6 83 0.0018 20.2 1.9 22 106-127 79-100 (137)
219 COG4359 Uncharacterized conser 21.4 2.9E+02 0.0062 19.1 7.4 89 8-108 11-110 (220)
220 PF08349 DUF1722: Protein of u 21.3 2.1E+02 0.0046 17.5 8.3 44 53-96 55-98 (117)
221 TIGR02675 tape_meas_nterm tape 21.1 1.7E+02 0.0037 16.4 3.1 14 45-58 28-41 (75)
222 PF01885 PTS_2-RNA: RNA 2'-pho 20.7 2E+02 0.0043 19.5 3.7 33 43-75 28-60 (186)
223 PF04876 Tenui_NCP: Tenuivirus 20.7 2.6E+02 0.0057 18.4 6.6 17 43-59 95-111 (175)
224 KOG2419|consensus 20.5 96 0.0021 25.6 2.4 64 33-96 439-534 (975)
225 KOG3957|consensus 20.4 2.2E+02 0.0047 21.6 4.0 64 86-149 268-335 (387)
226 PLN00156 histone H2AX; Provisi 20.3 1.8E+02 0.004 18.8 3.3 51 66-118 65-115 (139)
227 KOG2301|consensus 20.1 58 0.0013 29.8 1.3 61 67-127 1417-1484(1592)
228 PLN00157 histone H2A; Provisio 20.1 1.6E+02 0.0035 18.9 2.9 49 67-117 63-111 (132)
229 KOG4301|consensus 20.0 2.1E+02 0.0045 21.7 3.9 57 70-127 113-173 (434)
230 KOG2557|consensus 20.0 4.2E+02 0.009 20.4 6.9 50 47-96 74-123 (427)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.87 E-value=5e-21 Score=123.49 Aligned_cols=121 Identities=23% Similarity=0.388 Sum_probs=111.2
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhh-ccChHHHHHHHHHHhhcCCCCccc
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFIT 85 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~ 85 (149)
+.|.|++.+|..+++. +|..+++..+.+++..+|. +++.|+|.+|+.++.... .....++++++|+.||.+++|+|+
T Consensus 33 ~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is 110 (160)
T COG5126 33 SDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYIS 110 (160)
T ss_pred CCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceec
Confidence 3788999999999996 8878888899999999999 889999999999999876 466789999999999999999999
Q ss_pred HHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 86 REEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 86 ~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
..++..++..+ +++++..+++.+|.+++|.|+|++|.+.+...+
T Consensus 111 ~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 111 IGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 99999999998 699999999999999999999999999886543
No 2
>KOG0044|consensus
Probab=99.86 E-value=5.8e-21 Score=127.09 Aligned_cols=125 Identities=34% Similarity=0.500 Sum_probs=115.7
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCccc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 85 (149)
+.+|.++.++|+.++...++...+..+...+|..+|.|++|.|+|.||+..++.+..+..++.++++|++||.|++|.|+
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEc
Confidence 46788999999999999887677888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC---------------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 86 REEMFQLLRGT---------------NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 86 ~~ef~~~l~~~---------------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
+.|+..++... .++.+..+|+.+|.|+||.||++||.......+.
T Consensus 119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 99999988776 3788899999999999999999999999887655
No 3
>KOG0027|consensus
Probab=99.84 E-value=1.2e-19 Score=118.25 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=106.9
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccC-----hHHHHHHHHHHhhcCCC
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-----NEELIKFTFLIYDLNND 81 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~-----~~~~~~~~f~~~D~~~~ 81 (149)
..|.|+..+|..+++. ++..+....+..++..+|.+++|.|++.+|+.++....... ..+.++.+|+.||.+++
T Consensus 21 ~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~ 99 (151)
T KOG0027|consen 21 GDGKISVEELGAVLRS-LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD 99 (151)
T ss_pred CCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC
Confidence 4577999999999999 56466666789999999999999999999999998776432 24588899999999999
Q ss_pred CcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 82 GFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 82 g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
|+|+..||+.++..+ +.+++..+++..|.|++|.|+|++|+.++..
T Consensus 100 G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 100 GFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred CcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 999999999999999 6889999999999999999999999999864
No 4
>PTZ00183 centrin; Provisional
Probab=99.78 E-value=2.1e-17 Score=108.17 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=105.5
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhh-ccChHHHHHHHHHHhhcCCCCcc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i 84 (149)
.++|.|+..+|..+++. .+.......+..+|..+|.+++|.|++.+|+.++.... .....+.++.+|..+|.+++|.|
T Consensus 29 ~~~G~i~~~e~~~~l~~-~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 29 DGSGTIDPKELKVAMRS-LGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence 45678999999999987 45334556789999999999999999999999887643 33455678899999999999999
Q ss_pred cHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 85 TREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 85 ~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
+..||..++... +...+..+|..+|.+++|.|++++|..++...|
T Consensus 108 ~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 108 SLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccc
Confidence 999999999875 688899999999999999999999999997644
No 5
>KOG0034|consensus
Probab=99.76 E-value=2.1e-17 Score=110.02 Aligned_cols=119 Identities=31% Similarity=0.464 Sum_probs=102.7
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCc-ccHHHHHHHHHhhhccChH-HHHHHHHHHhhcCCCCcc
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGV-IHLDEWVLGLSCFLRGTNE-ELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i 84 (149)
+.|.++++||..+.. ...+....+++..++.+++|. |+|++|+..+......... ++++.+|++||.+++|+|
T Consensus 47 ~~g~lt~eef~~i~~-----~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I 121 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPE-----LALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFI 121 (187)
T ss_pred ccCccCHHHHHHHHH-----HhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcC
Confidence 567799999999995 334456789999999998888 9999999999998765544 499999999999999999
Q ss_pred cHHHHHHHHHhC-----h------HHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 85 TREEMFQLLRGT-----N------EELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 85 ~~~ef~~~l~~~-----~------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
+.+|+..++..+ + .+.++..|..+|.++||.||++||.+++...|.
T Consensus 122 ~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 122 SREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred cHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 999999999888 1 456678899999999999999999999987654
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.75 E-value=7.3e-17 Score=104.43 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=102.9
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i 84 (149)
.+.|.|+..+|..++..+ +..+..+.+..+|..+|.+++|.|++++|+.++..... ......++.+|..+|.+++|.|
T Consensus 23 ~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 23 DGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFI 101 (149)
T ss_pred CCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeE
Confidence 467889999999999873 42344567899999999999999999999998876532 3455678889999999999999
Q ss_pred cHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 85 TREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 85 ~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
+.++|..++... +.+.+..++..+|.+++|.|+++||+.++.
T Consensus 102 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 102 SAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred eHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 999999999876 678899999999999999999999998875
No 7
>KOG0037|consensus
Probab=99.75 E-value=4.6e-17 Score=108.55 Aligned_cols=133 Identities=18% Similarity=0.144 Sum_probs=114.4
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCccc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 85 (149)
.++|.|+.+|++..+.......-..+-|+-|+..+|.+.+|.|++.||..+|+.+ ..|+.+|..||.|++|+|+
T Consensus 69 d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~ 142 (221)
T KOG0037|consen 69 DRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTID 142 (221)
T ss_pred cccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCccc
Confidence 3567799999999998533334455678999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc--ccccccccccCCcc
Q psy9937 86 REEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN--QSYNRLDLNVGTLC 144 (149)
Q Consensus 86 ~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~~~~~~~ 144 (149)
..||..+|..+ +.+....+++.+|..++|.|.+++|++++....- ..+.+.+.++.++.
T Consensus 143 ~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i 207 (221)
T KOG0037|consen 143 SSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSI 207 (221)
T ss_pred HHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccceeE
Confidence 99999999999 7899999999999888999999999998886544 26677777766554
No 8
>KOG0028|consensus
Probab=99.72 E-value=5.2e-16 Score=98.71 Aligned_cols=122 Identities=14% Similarity=0.243 Sum_probs=108.3
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhh-ccChHHHHHHHHHHhhcCCCCcc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i 84 (149)
...|.|..++|+..+++ +|.-+.++.+.++...+|+++.|.|+|++|+..+.... ...+.+.+..+|+.+|.+++|+|
T Consensus 45 ~~~g~iD~~EL~vAmra-lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gki 123 (172)
T KOG0028|consen 45 DMAGKIDVEELKVAMRA-LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKI 123 (172)
T ss_pred CCCCcccHHHHHHHHHH-cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCc
Confidence 35678999999999998 77666777789999999999999999999999876543 34578888999999999999999
Q ss_pred cHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 85 TREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 85 ~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
+..+|..+...+ +++++.+++..+|.+++|.|+-+||.++++..
T Consensus 124 s~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 124 SQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred CHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 999999999999 58899999999999999999999999998753
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.70 E-value=7.8e-16 Score=99.51 Aligned_cols=104 Identities=25% Similarity=0.337 Sum_probs=95.3
Q ss_pred ccHHH--HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHH
Q psy9937 27 VTEEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEE 99 (149)
Q Consensus 27 ~~~~~--~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~ 99 (149)
++.++ .+++.|+.+|++++|.|+..++..+++.+...++...+..+|..+|. +++.|++.+|..++... +++
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 44444 38999999999999999999999999999899999999999999999 99999999999999888 589
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 100 LIKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 100 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
++.++|+.||.|++|.|+..+++.++......
T Consensus 93 el~~aF~~fD~d~dG~Is~~eL~~vl~~lge~ 124 (160)
T COG5126 93 ELREAFKLFDKDHDGYISIGELRRVLKSLGER 124 (160)
T ss_pred HHHHHHHHhCCCCCceecHHHHHHHHHhhccc
Confidence 99999999999999999999999999976554
No 10
>KOG0027|consensus
Probab=99.69 E-value=7.1e-16 Score=100.48 Aligned_cols=112 Identities=26% Similarity=0.387 Sum_probs=99.1
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----h----HHHH
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----N----EELI 101 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~----~~~~ 101 (149)
..+..+|+.+|++++|.|+..++..+++.+...++...+..++..+|.+++|.|++++|..++... . .+++
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999877 1 3489
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcccc--------cccccccccCC
Q psy9937 102 KFTFLIYDLNNDGFITREEMFQLLRYSRNQ--------SYNRLDLNVGT 142 (149)
Q Consensus 102 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~--------~~~~~~~~~~~ 142 (149)
.++|+.+|.|++|.||+.|+.++|.....+ ++...+.+.++
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDG 136 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999987665 44555555444
No 11
>PTZ00183 centrin; Provisional
Probab=99.61 E-value=3.2e-14 Score=93.02 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=87.1
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHH
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFL 106 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~ 106 (149)
.+..+|..+|.+++|.|+..+|..++..+........+..+|..+|.+++|.|++.||..++... ..+.+..+|+
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~ 97 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFR 97 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 37899999999999999999999999987666677788999999999999999999999987764 4678899999
Q ss_pred HhCCCCCCcccHHHHHHHHHhc
Q psy9937 107 IYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 107 ~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.+|.+++|.|+.+||..++...
T Consensus 98 ~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 98 LFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HhCCCCCCcCcHHHHHHHHHHh
Confidence 9999999999999999999864
No 12
>KOG0031|consensus
Probab=99.59 E-value=1.3e-13 Score=87.29 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=103.6
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i 84 (149)
++.|-|.+++++.++.+ +|...+++.+..++. ...|.|+|.-|+.++..... ..+++.+..+|..||.+++|+|
T Consensus 44 nrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I 118 (171)
T KOG0031|consen 44 NRDGFIDKEDLRDMLAS-LGKIASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKI 118 (171)
T ss_pred cCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCcc
Confidence 46788999999999998 666777778888886 56789999999999987654 4667888999999999999999
Q ss_pred cHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 85 TREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 85 ~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
..+.++.+|... ++++++.+|+.+-.+..|.++|..|..++..
T Consensus 119 ~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 119 DEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999988 6899999999999999999999999999974
No 13
>PTZ00184 calmodulin; Provisional
Probab=99.56 E-value=1.2e-13 Score=89.24 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=87.1
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHH
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFL 106 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~ 106 (149)
.+...|..+|.+++|.|++.+|..++..+...+..+.+..+|..+|.+++|.|++++|..++... ....+..+|+
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~ 91 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFK 91 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 37899999999999999999999999887766777889999999999999999999999988754 3567889999
Q ss_pred HhCCCCCCcccHHHHHHHHHhc
Q psy9937 107 IYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 107 ~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.+|.+++|.|+.++|..++...
T Consensus 92 ~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred hhCCCCCCeEeHHHHHHHHHHH
Confidence 9999999999999999998764
No 14
>KOG0044|consensus
Probab=99.51 E-value=5.1e-13 Score=89.26 Aligned_cols=117 Identities=27% Similarity=0.448 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccC-CCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcccH
Q psy9937 9 DRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRL-CDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITR 86 (149)
Q Consensus 9 ~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~-~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~ 86 (149)
..+++..+..+.+.. .-+...++.+++.|=.+ .+|.++.++|..++..... +......+.+|+.||.|++|.|++
T Consensus 7 ~~~~~~~~e~l~~~t---~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F 83 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQT---KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDF 83 (193)
T ss_pred ccCCcHHHHHHHHhc---CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCH
Confidence 446666677777542 22334567888877554 4899999999999998875 567778899999999999999999
Q ss_pred HHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 87 EEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 87 ~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.||..+|..+ .++.++++|+.||.|++|.|+++|+..++...
T Consensus 84 ~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 84 LEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 9999998888 48899999999999999999999999988763
No 15
>KOG0036|consensus
Probab=99.47 E-value=8.6e-13 Score=95.56 Aligned_cols=123 Identities=20% Similarity=0.132 Sum_probs=106.8
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCccc
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 85 (149)
++.|.++..++...+..+-...++.+..+.+|..+|.|.+|.+++++|..++.. .+..+..+|...|.++||.|+
T Consensus 26 ~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~ 100 (463)
T KOG0036|consen 26 KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKID 100 (463)
T ss_pred CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccC
Confidence 356889999999888874332356677899999999999999999999999964 446677799999999999999
Q ss_pred HHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccccc
Q psy9937 86 REEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSY 133 (149)
Q Consensus 86 ~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 133 (149)
..|+...++++ +++++..+|..+|+++++.|+++||..++...|...+
T Consensus 101 ~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i 152 (463)
T KOG0036|consen 101 PNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDL 152 (463)
T ss_pred HHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHH
Confidence 99999999999 6889999999999999999999999999988776533
No 16
>KOG0028|consensus
Probab=99.45 E-value=2.2e-12 Score=82.35 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=92.4
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHH
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTF 105 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~ 105 (149)
+.++..|..+|++++|.|+..++...+..++..+..+.+..+..-+|.++.|+|++++|...+... +.+++..+|
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 448999999999999999999999999988888888888889999999999999999999987666 789999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 106 LIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 106 ~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+.+|.|++|.||..+|..+.......
T Consensus 113 rl~D~D~~Gkis~~~lkrvakeLgen 138 (172)
T KOG0028|consen 113 RLFDDDKTGKISQRNLKRVAKELGEN 138 (172)
T ss_pred HcccccCCCCcCHHHHHHHHHHhCcc
Confidence 99999999999999999999887663
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=1e-12 Score=73.78 Aligned_cols=57 Identities=30% Similarity=0.596 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC--------hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT--------NEELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~--------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
++.+|..+|.+++|+|+.+||..++..+ .++.+..+|+.+|.|++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4567777777777777777777777777 23455566888888888888888887764
No 18
>KOG0037|consensus
Probab=99.38 E-value=1.7e-11 Score=82.20 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=98.1
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccH
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 86 (149)
..|.|..+||..+.+.+ . -.+.+|..+|.|++|.|+..|+...+..+....+.+....+++.||..++|.|.+
T Consensus 107 ~~G~i~f~EF~~Lw~~i----~---~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~F 179 (221)
T KOG0037|consen 107 NSGTIGFKEFKALWKYI----N---QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDF 179 (221)
T ss_pred CCCccCHHHHHHHHHHH----H---HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeH
Confidence 45779999999999873 2 2489999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHhChHHHHHHHHHHhCCCCCC--cccHHHHHHHHH
Q psy9937 87 EEMFQLLRGTNEELIKFTFLIYDLNNDG--FITREEMFQLLR 126 (149)
Q Consensus 87 ~ef~~~l~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~l~ 126 (149)
++|.+.+-.+ ..+.++|+..|.+..| +|+|++|+.+..
T Consensus 180 D~FI~ccv~L--~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 180 DDFIQCCVVL--QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHHHHH--HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 9999998884 4577899999998888 688999998754
No 19
>PLN02964 phosphatidylserine decarboxylase
Probab=99.38 E-value=1e-11 Score=96.18 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHhhhcCCCccHH--HHHHHHHHHHccCCCCcccHHHHHHHHHhhh-ccChHHH---HHHHHHHhhcCCCC
Q psy9937 9 DRLGSLVCRELLHNTFDLVTEE--ILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEEL---IKFTFLIYDLNNDG 82 (149)
Q Consensus 9 ~~i~~~e~~~~~~~~~~~~~~~--~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~---~~~~f~~~D~~~~g 82 (149)
..++++++....+.-+...+.. +.+.+.|..+|++++|.+ +..++..+. ..+.++. ++.+|..+|.+++|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG 194 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDG 194 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 3477777776665311113332 337899999999999987 666666665 3455554 78899999999999
Q ss_pred cccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 83 FITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 83 ~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
.|+++||..++..+ +++++..+|+.+|.|++|.|+++||..++...+
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 99999999999876 578899999999999999999999999998743
No 20
>KOG0038|consensus
Probab=99.36 E-value=8.9e-12 Score=78.50 Aligned_cols=100 Identities=22% Similarity=0.348 Sum_probs=85.9
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----h----HHH
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----N----EEL 100 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~----~~~ 100 (149)
.+-+++...+..++.|.++|++|+.+++.+.. .+.+-++..+|+.||-|+++.|...++...+..+ + ...
T Consensus 71 pfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 71 PFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred hHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 34578888999999999999999999998875 4556678889999999999999999999999988 2 234
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 101 IKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 101 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
++.++.+.|.|+||.+++.||.+++...|.
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 467789999999999999999999987554
No 21
>KOG0030|consensus
Probab=99.34 E-value=3.4e-11 Score=75.21 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=89.9
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccC--CCCcccHHHHHHHHHhhhcc---ChHHHHHHHHHHhhcCCC
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRL--CDGVIHLDEWVLGLSCFLRG---TNEELIKFTFLIYDLNND 81 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~D~~~~ 81 (149)
.++.|+..+....++. +|..+.+..+.+.....+++ +-..|+|++|+.+++.+.+. .+-+.+-..++.||++++
T Consensus 24 gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~ 102 (152)
T KOG0030|consen 24 GDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGN 102 (152)
T ss_pred CcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCC
Confidence 4567999999999988 55455555556666656554 34689999999998877542 233444448899999999
Q ss_pred CcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 82 GFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 82 g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
|+|...|++++|..+ +++++..++.-. .|.+|.|.|+.|++.+.
T Consensus 103 G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 103 GTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 999999999999988 688888888776 47789999999998765
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.29 E-value=1.7e-11 Score=72.51 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhc-CCCCcccHHHHHHHHHh-C----hH-HHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 67 ELIKFTFLIYDL-NNDGFITREEMFQLLRG-T----NE-ELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 67 ~~~~~~f~~~D~-~~~g~i~~~ef~~~l~~-~----~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
..+..+|..||. +++|+|+..||+.++.. + +. +.+..+++.+|.|++|.|+|+||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345668888888 88888888888888887 5 34 778888888888888888888888887654
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=1.7e-11 Score=68.78 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccC----hHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLL 93 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~----~~~~~~~~f~~~D~~~~g~i~~~ef~~~l 93 (149)
++++|+.+|.+++|.|+.+||..++..+.... ..+.++.+|..+|.+++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999887533 44566777999999999999999998764
No 24
>KOG4223|consensus
Probab=99.22 E-value=8.9e-11 Score=82.91 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=91.9
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccC--h---HHHHHHHHHHhhcCC
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT--N---EELIKFTFLIYDLNN 80 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~--~---~~~~~~~f~~~D~~~ 80 (149)
...|.++.+||..+++.--......-+|...+.-+|+|++|.|+++||+.-+-...... + ...-+..+...|.|+
T Consensus 175 d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~Dknk 254 (325)
T KOG4223|consen 175 DGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNK 254 (325)
T ss_pred CCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCC
Confidence 45667999999999985221122334588999999999999999999998665543211 1 122345778889999
Q ss_pred CCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 81 DGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 81 ~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
+|+++.+|+...+.-- ...++..++...|.|+||++|++|.+.-.
T Consensus 255 DG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 255 DGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHY 303 (325)
T ss_pred CCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCc
Confidence 9999999998655443 47889999999999999999999988643
No 25
>KOG0031|consensus
Probab=99.19 E-value=7.1e-10 Score=70.56 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHH
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTF 105 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~ 105 (149)
+++++.|..+|.|++|.|+-+++...+..++...+++.+..++.. ..|.|++.-|..++... +++.+..+|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 447999999999999999999999999999999999999877765 57899999999988877 689999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 106 LIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 106 ~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+.+|.+++|.|..+.++.+|......
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~gDr 133 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTMGDR 133 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHhccc
Confidence 99999999999999999999886554
No 26
>KOG0377|consensus
Probab=99.19 E-value=3.2e-10 Score=83.22 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=82.2
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhc-----------------------------------------------c
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-----------------------------------------------G 63 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-----------------------------------------------~ 63 (149)
..+..-|+..|....|.|+..+|..++..... .
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 34788899999999999999999988753211 0
Q ss_pred ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC--------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT--------NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
.....++.+|+.+|.|++|.|+.+||..+|..+ +++++.++-+.+|.|+||.|+++||.++++...
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 012335779999999999999999999999988 588999999999999999999999999987643
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.19 E-value=1.6e-10 Score=68.33 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=48.9
Q ss_pred HHHHHHHHHhh-cCCCC-cccHHHHHHHHHh-----C----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYD-LNNDG-FITREEMFQLLRG-----T----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~-----~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
..+..+|..|| .+++| .|+.+||+.+++. + +++.+..+++.+|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34566888887 68888 5888888888887 4 4677888888888888888888888887764
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=2.1e-10 Score=68.68 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHHHHHhh-cCCCC-cccHHHHHHHHHhC---------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 68 LIKFTFLIYD-LNNDG-FITREEMFQLLRGT---------NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 68 ~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~~---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.+..+|..|| .+++| +|+..||..++... +...+..+++.+|.|++|.|+|+||+.++...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3455788887 67887 48888888888551 35678888888888888888888888877653
No 29
>KOG0030|consensus
Probab=99.16 E-value=5.5e-10 Score=69.88 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcC--CCCcccHHHHHHHHHhC-------hHHH
Q psy9937 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLN--NDGFITREEMFQLLRGT-------NEEL 100 (149)
Q Consensus 30 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~ef~~~l~~~-------~~~~ 100 (149)
...++.+|..||..++|.|+..+.-.+++.+...|++..+......++.+ +--.|++++|..++..+ +-+.
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 34589999999999999999999999999999999999988888888777 44689999999999988 4566
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 101 IKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 101 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
.-+-++.+|++++|.|...|++++|....+.
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGek 120 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEK 120 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhh
Confidence 7778999999999999999999999987665
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=2.8e-10 Score=63.83 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=39.7
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 71 FTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 71 ~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.+|..+|.+++|.|+.+|+..++... +.+.+..++..+|.+++|.|+++||+.++..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46777777777777777777766555 4566777777777777777777777766653
No 31
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.13 E-value=3.9e-10 Score=69.89 Aligned_cols=62 Identities=27% Similarity=0.320 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 65 NEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
....+..+|..+|.|++|.|+.+|+..+.....+..+..+|..+|.|++|.||++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34678899999999999999999999887333578889999999999999999999999993
No 32
>KOG0036|consensus
Probab=99.11 E-value=1.8e-09 Score=78.71 Aligned_cols=99 Identities=28% Similarity=0.339 Sum_probs=89.8
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhcc-ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDL 110 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~ 110 (149)
.++.+|..+|.+++|.++..++...+..+..+ +..+....+|...|.|.+|.|++.||+..+.. .+.++..+|+.+|.
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-~E~~l~~~F~~iD~ 93 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-KELELYRIFQSIDL 93 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-hHHHHHHHHhhhcc
Confidence 38999999999999999999999999888766 66777888999999999999999999999988 47788899999999
Q ss_pred CCCCcccHHHHHHHHHhcccc
Q psy9937 111 NNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 111 ~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+.||.|+.+|.-+.+.....+
T Consensus 94 ~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 94 EHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred ccCCccCHHHHHHHHHHhCCc
Confidence 999999999999999876554
No 33
>KOG0034|consensus
Probab=99.11 E-value=1.7e-09 Score=72.32 Aligned_cols=94 Identities=31% Similarity=0.451 Sum_probs=80.9
Q ss_pred HHHHHHHHccC-CCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCc-ccHHHHHHHHHhC-----hHHHHHHHH
Q psy9937 33 MERIFCAFDRL-CDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF-ITREEMFQLLRGT-----NEELIKFTF 105 (149)
Q Consensus 33 ~~~~f~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-i~~~ef~~~l~~~-----~~~~~~~~~ 105 (149)
+...|.+++.+ +.|.++.+||..+.... .+....+++..|+.+++|. |++++|..++... .++.++-+|
T Consensus 35 L~~rF~kl~~~~~~g~lt~eef~~i~~~~----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF 110 (187)
T KOG0034|consen 35 LYERFKKLDRNNGDGYLTKEEFLSIPELA----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAF 110 (187)
T ss_pred HHHHHHHhccccccCccCHHHHHHHHHHh----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 77889999998 99999999999998332 2234556899999999988 9999999999998 356899999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 106 LIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 106 ~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
+.||.+++|.|+.+|+..++.....
T Consensus 111 ~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 111 RVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 9999999999999999999987655
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.11 E-value=6.6e-10 Score=66.96 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 68 LIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.++.+|..+|.+++|.|+.+|+..+++.. +.+++..++..+|.+++|.|+++||+.++..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 35556777777777777777777776655 4566777777777777777777777776654
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.10 E-value=7.8e-10 Score=66.10 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred HHHHHHHHHhh-cCCCC-cccHHHHHHHHHh-C--------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYD-LNNDG-FITREEMFQLLRG-T--------NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D-~~~~g-~i~~~ef~~~l~~-~--------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
+.++.+|..|| .+++| +|+..||..+++. + +.+.+..+++.+|.+++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 44566777775 77777 4777777777764 2 3566777777777777777777777776654
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.07 E-value=1.3e-09 Score=65.47 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=40.2
Q ss_pred HHHHHHHHhhc-CC-CCcccHHHHHHHHHh-----C----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 68 LIKFTFLIYDL-NN-DGFITREEMFQLLRG-----T----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 68 ~~~~~f~~~D~-~~-~g~i~~~ef~~~l~~-----~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.+..+|..||. ++ +|+|+..|+..+++. + +++.+..++..+|.+++|.|+|++|+.++..
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34557777775 65 577777777777654 1 4566777777777777777777777766653
No 37
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.06 E-value=8.2e-10 Score=65.36 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHHHcc-CCCCcccHHHHHHHHHh-hhccChH-HHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDR-LCDGVIHLDEWVLGLSC-FLRGTNE-ELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~-~~~g~i~~~ef~~~~~~-~~~~~~~-~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+..+|+.+|+ +++|.|+..+|+.++.. +....+. ..++.++...|.|++|.|+++||..++..+
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6899999999 99999999999999998 5443444 789999999999999999999999998886
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.02 E-value=2.8e-09 Score=63.10 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHhhc-CC-CCcccHHHHHHHHHh---C----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 70 KFTFLIYDL-NN-DGFITREEMFQLLRG---T----NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 70 ~~~f~~~D~-~~-~g~i~~~ef~~~l~~---~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
-.+|..||. ++ +|+|+.+||+.++.. + +++++.++++.+|.|++|.|+|+||+.++...
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 347888877 55 778888888888852 2 57788888888888888888888888777653
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.01 E-value=3.1e-09 Score=62.96 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=39.2
Q ss_pred HHHHHHHHhhc--CCCCcccHHHHHHHHHh-C--------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 68 LIKFTFLIYDL--NNDGFITREEMFQLLRG-T--------NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 68 ~~~~~f~~~D~--~~~g~i~~~ef~~~l~~-~--------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.++.+|..||. +++|.|+..||..+++. + +...+..++..+|.+++|.|++++|+.++..
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 34556777777 67777777777766654 1 2566667777777777777777777766654
No 40
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.99 E-value=3.9e-09 Score=57.62 Aligned_cols=59 Identities=34% Similarity=0.393 Sum_probs=30.5
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHH
Q psy9937 34 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92 (149)
Q Consensus 34 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~ 92 (149)
..+|..+|.+++|.|++++|..++..+....+.+.+..+|..+|.+++|.|++.+|..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 34455555555555555555555555444444444444555555555555555555443
No 41
>KOG4223|consensus
Probab=98.99 E-value=9.5e-09 Score=72.82 Aligned_cols=62 Identities=24% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 94 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 94 (149)
+..++.++|.+++|+|+..++...+..............-|..+|.+.+|.|+++|+.....
T Consensus 79 l~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 79 LGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred HHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 44444555544455555555444444333333333333344444444444444444444433
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.98 E-value=3.8e-09 Score=62.60 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=46.0
Q ss_pred HHHHHHHH-hhcCCCC-cccHHHHHHHHHhC---------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 68 LIKFTFLI-YDLNNDG-FITREEMFQLLRGT---------NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 68 ~~~~~f~~-~D~~~~g-~i~~~ef~~~l~~~---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.+..+|.. +|.+++| +|+.+||+.++... ....+..+++.+|.|++|.|+|+||+.++...
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34557777 5666765 88888888888775 24678888888888888888888888877653
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.98 E-value=3.4e-09 Score=57.84 Aligned_cols=57 Identities=30% Similarity=0.457 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
+..+|..+|.+++|.|+..+|..++..+ +.+.+..+|..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4568999999999999999999999887 57888999999999999999999998875
No 44
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.97 E-value=5e-09 Score=61.98 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=57.1
Q ss_pred HHHHHHHHc-cCCCC-cccHHHHHHHHHh-----hhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFD-RLCDG-VIHLDEWVLGLSC-----FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d-~~~~g-~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+..+|+.+| ++++| .|+..++..+++. +....+.+.+..++..+|.|++|.|+++||..++...
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 689999998 79999 5999999999998 6666777889999999999999999999999888764
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.95 E-value=4.9e-09 Score=58.65 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=53.7
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 34 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 34 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.+|..+|++++|.|+.+++..++.... .+.+.++.+|..+|.+++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999998763 366778889999999999999999999888653
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.92 E-value=5.7e-09 Score=56.05 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHhhhcc-ChHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q psy9937 45 DGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLR 94 (149)
Q Consensus 45 ~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 94 (149)
+|.|+.++|..++..++.. .+.+.+..+|..+|.+++|.|+++||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3555555555555444333 4444455555555555555555555555543
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.91 E-value=1.3e-08 Score=61.23 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=56.5
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+..+|..+|.+++|.|+..++..++... +.+.+.+..+|..+|.+++|.|+++||..++..+
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 7899999999999999999999999875 4566778889999999999999999999988875
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.91 E-value=7.2e-09 Score=55.65 Aligned_cols=46 Identities=35% Similarity=0.573 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 81 DGFITREEMFQLLRGT-----NEELIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 81 ~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
+|.|+.++|..++..+ +++++..+|..+|.+++|.|+++||+.++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4566666666666432 455566666666666666666666666554
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=98.90 E-value=1.3e-08 Score=79.23 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=67.1
Q ss_pred HHHHhhhcCC--CccHHH--HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHH
Q psy9937 16 CRELLHNTFD--LVTEEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 91 (149)
Q Consensus 16 ~~~~~~~~~~--~~~~~~--~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~ 91 (149)
+..+++. ++ ..+..+ +++++|..+|.+++|.|+++||+.++..+....+++.++.+|+.||.|++|.|+.+||..
T Consensus 161 Lg~ilrs-lG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 161 VGSIFVS-CSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 6667776 34 233333 379999999999999999999999999876667788899999999999999999999999
Q ss_pred HHHh
Q psy9937 92 LLRG 95 (149)
Q Consensus 92 ~l~~ 95 (149)
++..
T Consensus 240 vL~~ 243 (644)
T PLN02964 240 LLAL 243 (644)
T ss_pred HHHh
Confidence 9988
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.87 E-value=1.6e-08 Score=60.54 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHc-cCCCC-cccHHHHHHHHHhhh-----ccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFD-RLCDG-VIHLDEWVLGLSCFL-----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d-~~~~g-~i~~~ef~~~~~~~~-----~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.++|..+| ++++| .|+..|+..++.... .......+..++..+|.|++|.|+++||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 578899999 78998 599999999997632 23356678889999999999999999999998875
No 51
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.87 E-value=2.1e-08 Score=59.88 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHc-cCCCC-cccHHHHHHHHHh-hhc----cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 31 ILMERIFCAFD-RLCDG-VIHLDEWVLGLSC-FLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 31 ~~~~~~f~~~d-~~~~g-~i~~~ef~~~~~~-~~~----~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.+.+.|..+| .+++| .|+..++..++.. +.. .++.+.++.+|..+|.+++|.|+++||..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34789999997 99999 5999999999975 322 3567789999999999999999999999988875
No 52
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.85 E-value=2.5e-08 Score=59.80 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=55.9
Q ss_pred HHHHHHHHHcc-CC-CCcccHHHHHHHHHh-----hhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDR-LC-DGVIHLDEWVLGLSC-----FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~-~~-~g~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.+..+|..+|. ++ +|.|+..++..++.. +....+.+.+..++..+|.+++|.|+++||..++...
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 36889999997 87 699999999999975 2335567889999999999999999999999988875
No 53
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.78 E-value=6.8e-08 Score=57.16 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=55.5
Q ss_pred HHHHHHHHHcc--CCCCcccHHHHHHHHHh-hhcc----ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDR--LCDGVIHLDEWVLGLSC-FLRG----TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~--~~~g~i~~~ef~~~~~~-~~~~----~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.+..+|..+|+ +++|.|+..++..++.. .... .....+..++..+|.+++|.|++++|..++...
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 37889999999 89999999999999975 3222 247788889999999999999999999988874
No 54
>KOG2643|consensus
Probab=98.78 E-value=4.7e-08 Score=71.88 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=77.8
Q ss_pred cCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccC---hHHHHHHHHHHhhcCCCCcc
Q psy9937 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT---NEELIKFTFLIYDLNNDGFI 84 (149)
Q Consensus 8 ~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~f~~~D~~~~g~i 84 (149)
++.++.++|..+++.+ ..+.+.--|..+|+..+|.|+-.+|..++-..-..+ ....++.+-+.++.++. .|
T Consensus 300 ~~kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~-gI 373 (489)
T KOG2643|consen 300 NGKLSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK-GI 373 (489)
T ss_pred CccccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC-Cc
Confidence 3458888888888762 234566778888887778888888877654332111 12234444455544432 36
Q ss_pred cHHHHHHHHHhC-------------------------------------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 85 TREEMFQLLRGT-------------------------------------NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 85 ~~~ef~~~l~~~-------------------------------------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
++.||..+.+-+ ++..++-+|+.+|.|+||.+|++||+.+|+.
T Consensus 374 Sl~Ef~~Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 374 SLQEFKAFFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 666666544333 3566778899999999999999999999987
Q ss_pred cccc
Q psy9937 128 SRNQ 131 (149)
Q Consensus 128 ~~~~ 131 (149)
.-+.
T Consensus 454 Rmhr 457 (489)
T KOG2643|consen 454 RMHR 457 (489)
T ss_pred Hhhc
Confidence 4443
No 55
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.76 E-value=5.7e-08 Score=57.48 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred HHHHHHHHcc-CC-CCcccHHHHHHHHHh---hhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDR-LC-DGVIHLDEWVLGLSC---FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~-~~-~g~i~~~ef~~~~~~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+-.+|.+++. ++ +|.|+.+||..++.. +....+.+.+..+++.+|.+++|.|+++||...+..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5688999997 66 889999999999974 3455677889999999999999999999999888774
No 56
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=8e-08 Score=56.89 Aligned_cols=60 Identities=25% Similarity=0.306 Sum_probs=44.2
Q ss_pred HHHHHHHhhcC--CCCcccHHHHHHHHHh-C----h----HHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 69 IKFTFLIYDLN--NDGFITREEMFQLLRG-T----N----EELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 69 ~~~~f~~~D~~--~~g~i~~~ef~~~l~~-~----~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
+...|..|+.. .+|.|+.+||..++.. + + +..+..+|+.+|.+++|.|+|+||+.++...
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 44577777655 3678888888888763 2 2 6778888888888888888888888877643
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=1.8e-08 Score=46.89 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 101 IKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 101 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
+..+|+.+|.|++|.|+++||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 45566666666666666666666654
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.73 E-value=1.1e-07 Score=59.05 Aligned_cols=58 Identities=28% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 93 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l 93 (149)
.+.-+|..+|.|++|.|+.+|+..+. ..+.+..+...|..+|.|++|.||++||...+
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 37899999999999999999999876 24556667889999999999999999999988
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.69 E-value=9.1e-08 Score=52.82 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHccCCCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCC-CcccHHHHHHHHHh
Q psy9937 36 IFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNND-GFITREEMFQLLRG 95 (149)
Q Consensus 36 ~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~-g~i~~~ef~~~l~~ 95 (149)
+|..||+++.|.|...+++.+++.... .+.+..++.+...+|+++. |.|+++.|..+++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 466667777777777777777766655 5666666667777777766 67777777666654
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.66 E-value=4.4e-08 Score=45.58 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRG 95 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~ 95 (149)
++.+|+.+|.|++|+|+++||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 445666666666666666666666654
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.66 E-value=1.8e-07 Score=55.43 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=53.1
Q ss_pred HHHHHHH-HccCCCC-cccHHHHHHHHHhhhc-----cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCA-FDRLCDG-VIHLDEWVLGLSCFLR-----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~-~d~~~~g-~i~~~ef~~~~~~~~~-----~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+..+|.. +|++++| .|+.+||..++..... ......+..++..+|.|++|.|+++||..++..+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5788888 6777865 9999999999987632 3345778889999999999999999999988775
No 62
>KOG4666|consensus
Probab=98.65 E-value=2.4e-08 Score=70.89 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhcc-ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC---hHHHHHH
Q psy9937 28 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT---NEELIKF 103 (149)
Q Consensus 28 ~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---~~~~~~~ 103 (149)
+....+..+|..||.+++|.+++.+....+..++.. ...+.++.+|++|+.+.||.+.-.+|.-+++.. ..-.+..
T Consensus 256 pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~ 335 (412)
T KOG4666|consen 256 PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPV 335 (412)
T ss_pred chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccc
Confidence 334457899999999999999999999988888764 567889999999999999999999988888876 2344567
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 104 TFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 104 ~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+|..++...+|.|++.+|.++....++-
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCchh
Confidence 8999999999999999999998876554
No 63
>KOG0751|consensus
Probab=98.61 E-value=1.9e-07 Score=69.90 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=82.9
Q ss_pred ccccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhc------cChHHHHHHHHHHhhc
Q psy9937 5 FCAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR------GTNEELIKFTFLIYDL 78 (149)
Q Consensus 5 ~~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~------~~~~~~~~~~f~~~D~ 78 (149)
+.++|.|+..||+.+=.-+ ..++.....+|+.||+.++|.++++++..+++.... .-..+.++. .|-.
T Consensus 85 ~tKDglisf~eF~afe~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~ 158 (694)
T KOG0751|consen 85 QTKDGLISFQEFRAFESVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGD 158 (694)
T ss_pred hcccccccHHHHHHHHhhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---Hhhh
Confidence 3566677777777655443 344555667777777777777777777777766542 112233442 3333
Q ss_pred CCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 79 NNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 79 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+....+++.+|.+++.+...+...+.|+..|..++|.||--+|...+......
T Consensus 159 ~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 159 IRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhh
Confidence 44456777777777777766778899999999999999999999888765544
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.61 E-value=1.9e-07 Score=51.53 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCCC-CcccHHHHHHHHHh
Q psy9937 71 FTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFLIYDLNND-GFITREEMFQLLRY 127 (149)
Q Consensus 71 ~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 127 (149)
.+|..||.++.|.|...++...|+.+ .+..+..+...+|.++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999998 48899999999999998 99999999999875
No 65
>KOG2643|consensus
Probab=98.53 E-value=4.9e-07 Score=66.67 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=87.3
Q ss_pred cccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccC---------------hHHHHH
Q psy9937 6 CAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT---------------NEELIK 70 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~---------------~~~~~~ 70 (149)
...|.||..|.--++.-+ ..++.-..-.|..+|.|+||.|+-+||....+...... ....+.
T Consensus 211 g~~GLIsfSdYiFLlTlL---S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLL---SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCCeeeHHHHHHHHHHH---ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 456778888877766642 22333357788999999999999999988775432110 011111
Q ss_pred H--HHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 71 F--TFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 71 ~--~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
. .-..|-++++++++.++|.+++..+.++.++--|..+|....|.|+..+|..++....
T Consensus 288 saL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred hhHHHHhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 1 2244678899999999999999998877778889999988889999999998877543
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=9.1e-07 Score=52.21 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhC---------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 72 TFLIYDLNNDGFITREEMFQLLRGT---------NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 72 ~f~~~D~~~~g~i~~~ef~~~l~~~---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
+|..|. ..++.++..||+..+..- ....+..+|+..|.|+||.|+|.||..++..
T Consensus 13 ~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 13 TFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 555554 334456666666655443 2455666666666666666666666665543
No 67
>KOG0040|consensus
Probab=98.52 E-value=7.6e-07 Score=73.93 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=79.1
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccC-------hHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC------hHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-------NEELIKFTFLIYDLNNDGFITREEMFQLLRGT------NEE 99 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~-------~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~ 99 (149)
+.-+|..||++.+|+++..+|..|++.+++.. ++..++.+....|++.+|+|+..++..++..- +.+
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~ 2334 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSE 2334 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchH
Confidence 67899999999999999999999999988643 34478999999999999999999999998776 567
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 100 LIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 100 ~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
++..+|+..+. +..+|+.++....|
T Consensus 2335 eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2335 EIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHHHHHHhhc-CCccccHHHHHhcC
Confidence 99999999998 77788887764433
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.51 E-value=2.2e-06 Score=63.75 Aligned_cols=57 Identities=42% Similarity=0.509 Sum_probs=49.8
Q ss_pred cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 63 GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
......++.+|..+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34567788899999999999999999842 5689999999999999999999988753
No 69
>KOG0041|consensus
Probab=98.47 E-value=2.3e-06 Score=57.09 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC------hHHHHHHHHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT------NEELIKFTFL 106 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~~~~~~~~ 106 (149)
...+|..+|.+.+|+|++.|++.++.++..+.+.-.++.+....|.|.+|+|++.||.-+++.. .+..+..+-+
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr 180 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLAR 180 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5677888888888888888888888877666666667777788888888888888887777665 2333333433
Q ss_pred H--hCCCCCCcccHHHHHHHHH
Q psy9937 107 I--YDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 107 ~--~d~~~~g~i~~~ef~~~l~ 126 (149)
. .|...-|......|..+--
T Consensus 181 ~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 181 LSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred hcccchhhhhhhhHHHHHHHHH
Confidence 3 6777777766666665433
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.41 E-value=1.7e-06 Score=51.14 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=51.5
Q ss_pred HHHHHHHHccC--CCCcccHHHHHHHHHhhh-ccCh----HHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRL--CDGVIHLDEWVLGLSCFL-RGTN----EELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~--~~g~i~~~ef~~~~~~~~-~~~~----~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+-.+|..++.. .+|.|+..++..++.... ...+ .+.+..+|..+|.+++|.|+++||..++..+
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 46788888755 478999999999997432 2233 6888999999999999999999999888764
No 71
>KOG0038|consensus
Probab=98.35 E-value=1.3e-06 Score=55.54 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=73.3
Q ss_pred cccccccCC--CCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhcc-ChHHH----HHHHHH
Q psy9937 2 ERIFCAFDR--LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-TNEEL----IKFTFL 74 (149)
Q Consensus 2 ~~~~~~~~~--i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~----~~~~f~ 74 (149)
..+|+..|. +|.++|..++.-+....+.+-.....|+.+|-|+++.|.-.++..++..+.++ .+.++ +..+..
T Consensus 77 ~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvie 156 (189)
T KOG0038|consen 77 CEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIE 156 (189)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 356777765 99999999998744423333336788889999999999999999999887654 33333 556677
Q ss_pred HhhcCCCCcccHHHHHHHHHhC
Q psy9937 75 IYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 75 ~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.-|.+++|++++.||.+++...
T Consensus 157 EAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 157 EADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HhcCCCCCcccHHHHHHHHHhC
Confidence 7899999999999999988775
No 72
>KOG0041|consensus
Probab=98.32 E-value=3.1e-06 Score=56.54 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
..+..+|..||.+.||+|++.|++.++..+ +.--+..+++..|.|.+|.||+.||.-+++....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 446779999999999999999999999999 4666789999999999999999999988876443
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.31 E-value=2.9e-06 Score=44.29 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHH
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 94 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~ 94 (149)
++|.|...+++.+.....+..+..+|+..|.+++|.+..+||..+++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 34555555555554444555555555555555555555555555444
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.30 E-value=4.2e-06 Score=62.25 Aligned_cols=56 Identities=36% Similarity=0.393 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy9937 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG 95 (149)
Q Consensus 27 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 95 (149)
......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||..+++.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 33445588999999999999999999952 356899999999999999999998876
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.30 E-value=4.7e-06 Score=50.72 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.....+|...+. ++|.|+.++...++... +.+.+..+|...|.+++|.++.+||.-+|...
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 445667777764 57888888888877766 67788888888888888888888888776643
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.29 E-value=4.7e-06 Score=51.54 Aligned_cols=63 Identities=27% Similarity=0.371 Sum_probs=48.4
Q ss_pred ccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy9937 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQL 124 (149)
Q Consensus 62 ~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 124 (149)
.......+...|..+|.|+||.|+..|+..+...+ .+..+...+..+|.|+||.||..|+..+
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34556778889999999999999999998887744 6778899999999999999999999764
No 77
>KOG2562|consensus
Probab=98.26 E-value=7e-06 Score=61.11 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=88.4
Q ss_pred cCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHH----ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCc
Q psy9937 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAF----DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF 83 (149)
Q Consensus 8 ~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 83 (149)
+|.|+++++...-... ++ ...+.++|... -...+|.+++++|+..+-.+.......-++..|+.+|.+++|.
T Consensus 292 d~lidk~~L~ry~d~t---lt-~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~ 367 (493)
T KOG2562|consen 292 DGLIDKEDLKRYGDHT---LT-ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGI 367 (493)
T ss_pred ccccCHHHHHHHhccc---hh-hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCc
Confidence 5668888888776652 33 45689999833 3345799999999998877766666677888999999999999
Q ss_pred ccHHHHHHHHHhC-------------hHHHHHHHHHHhCCCCCCcccHHHHHH
Q psy9937 84 ITREEMFQLLRGT-------------NEELIKFTFLIYDLNNDGFITREEMFQ 123 (149)
Q Consensus 84 i~~~ef~~~l~~~-------------~~~~~~~~~~~~d~~~~g~i~~~ef~~ 123 (149)
|+..|+.-+.... =++.+.+++...-....+.|++++|..
T Consensus 368 Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 368 LTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999988776665 167778888888777889999999987
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=6.4e-06 Score=43.00 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 83 FITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 83 ~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
++++.|++.+|+.+ ++..+..+|+.+|++++|++..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 47899999999999 6888999999999999999999999998875
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.23 E-value=2.1e-06 Score=38.46 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=11.0
Q ss_pred HHHHHhCCCCCCcccHHHHHH
Q psy9937 103 FTFLIYDLNNDGFITREEMFQ 123 (149)
Q Consensus 103 ~~~~~~d~~~~g~i~~~ef~~ 123 (149)
.+|+.+|.|++|.||.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 345555555555555555544
No 80
>KOG4251|consensus
Probab=98.21 E-value=5.3e-06 Score=57.22 Aligned_cols=64 Identities=20% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhc---cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLR---GTNEELIKFTFLIYDLNNDGFITREEMFQLLRG 95 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~ 95 (149)
.+..+|.+.|.|.+|.|+..++...+..-.. ....+.-+.-|+..|++++|.|+++||..-+..
T Consensus 102 klmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3677888888888888888887765543211 112233445677778888888888887654433
No 81
>KOG0377|consensus
Probab=98.20 E-value=8.8e-06 Score=60.49 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=55.7
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhc----cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.+..+|+.+|.|++|.|+.+||..+|..+.. .-....+-.+-+.+|-|++|+|++.||.++++..
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 3688999999999999999999999987753 2345556668899999999999999999998875
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.20 E-value=3.1e-06 Score=39.91 Aligned_cols=24 Identities=42% Similarity=0.717 Sum_probs=11.0
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHH
Q psy9937 71 FTFLIYDLNNDGFITREEMFQLLR 94 (149)
Q Consensus 71 ~~f~~~D~~~~g~i~~~ef~~~l~ 94 (149)
.+|..+|.+++|+|+.+||..+++
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHH
Confidence 344444444444444444444443
No 83
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.17 E-value=3.4e-06 Score=37.75 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCcccHHHHHHH
Q psy9937 70 KFTFLIYDLNNDGFITREEMFQL 92 (149)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~ef~~~ 92 (149)
+.+|..+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34667777777777777776654
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.16 E-value=9.5e-06 Score=47.91 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
..+..++...|.|+||.|++.||...+..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 444445555555555555555555544443
No 85
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.08 E-value=6.6e-06 Score=38.78 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 100 LIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 100 ~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
++..+|+.+|.|++|.|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999997
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.90 E-value=9.1e-05 Score=45.10 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.....+|...++ .+|.|+-.+....+... +.+.+.+..+|...|.+++|+++++||.-++...
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 347889988885 57999999999988765 5566888999999999999999999999988874
No 87
>KOG4251|consensus
Probab=97.83 E-value=0.00015 Score=50.28 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=83.2
Q ss_pred CCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhh----ccC-----hHHHHHHHHHHhhcCCC
Q psy9937 11 LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL----RGT-----NEELIKFTFLIYDLNND 81 (149)
Q Consensus 11 i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~----~~~-----~~~~~~~~f~~~D~~~~ 81 (149)
++..+|..+++.-...-.-...+..+...+|++++..++..+|+++.-... ... .....+..=..+|.|++
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 677888888875322222233478899999999999999999998753221 111 12333434467899999
Q ss_pred CcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 82 GFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 82 g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
|.++++|+.....-. .-.++..++..-|.+++-.++.++....-.
T Consensus 296 GivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~ 344 (362)
T KOG4251|consen 296 GIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDW 344 (362)
T ss_pred cceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHh
Confidence 999999998875444 355677888889999999999999887443
No 88
>KOG1029|consensus
Probab=97.74 E-value=0.00035 Score=55.48 Aligned_cols=61 Identities=13% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
-+++.+|..+|+...|+++-.+-+.+|... +...+..+|..-|.|+||.++.+||+-.|..
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 446779999999999999999888887766 6788999999999999999999999976654
No 89
>KOG2562|consensus
Probab=97.72 E-value=0.00012 Score=54.76 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=75.3
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHH----HhhcCCCCcccHHHHHHHHHhC----hHHHHHHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL----IYDLNNDGFITREEMFQLLRGT----NEELIKFT 104 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~ 104 (149)
+-+.|...|++++|.|+-++++..-... .+...+.++|. .+-...+|++++++|.-++-.+ +..-+...
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 4566888999999999999988776543 34567788888 3334578899999999988887 56778899
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 105 FLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 105 ~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
|+.+|.+++|.++..|...+....
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHH
Confidence 999999999999999988777653
No 90
>KOG4065|consensus
Probab=97.71 E-value=0.00015 Score=44.37 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhC--------------h----HHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy9937 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGT--------------N----EELIKFTFLIYDLNNDGFITREEMFQL 124 (149)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--------------~----~~~~~~~~~~~d~~~~g~i~~~ef~~~ 124 (149)
++.--.-|.+.|.|++|+|+--|+.+++... + +..+..+++.-|.|+||.|+|-||.+.
T Consensus 66 eqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 66 EQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3334457899999999999999999988776 2 344556677779999999999999864
No 91
>KOG3555|consensus
Probab=97.59 E-value=0.00024 Score=51.35 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhh---hccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCC
Q psy9937 34 ERIFCAFDRLCDGVIHLDEWVLGLSCF---LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDL 110 (149)
Q Consensus 34 ~~~f~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~ 110 (149)
...|+.+=.+.++..........-+.+ ..+.-...+.++|..+|.|.+|.++..|+..+-.+-.+..++..|...|.
T Consensus 214 ~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~ 293 (434)
T KOG3555|consen 214 RDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDT 293 (434)
T ss_pred HHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcc
Confidence 566666544444444434333332221 12334567889999999999999999999999888889999999999999
Q ss_pred CCCCcccHHHHHHHHHhcccc
Q psy9937 111 NNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 111 ~~~g~i~~~ef~~~l~~~~~~ 131 (149)
..||.||-.|+..++.....+
T Consensus 294 ~kDg~iS~~EWC~CF~k~~~p 314 (434)
T KOG3555|consen 294 YKDGSISTNEWCYCFQKSDPP 314 (434)
T ss_pred cccCccccchhhhhhccCCCc
Confidence 999999999999999876554
No 92
>KOG0751|consensus
Probab=97.55 E-value=0.0027 Score=48.33 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=48.6
Q ss_pred HccCCCCcccHHHHHHHHHhh-hccChHHH-HHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCc
Q psy9937 40 FDRLCDGVIHLDEWVLGLSCF-LRGTNEEL-IKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGF 115 (149)
Q Consensus 40 ~d~~~~g~i~~~ef~~~~~~~-~~~~~~~~-~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~ 115 (149)
.+.++.-..+-++|+.-.-.+ .......+ ++..=..-|.-.||.|++.||..+=..+ ++.....+|..+|+.++|.
T Consensus 45 ~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~ 124 (694)
T KOG0751|consen 45 IEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGE 124 (694)
T ss_pred HhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCc
Confidence 344555556666666543332 22222222 3322233455566677777765543333 5555666677777777777
Q ss_pred ccHHHHHHHHHhc
Q psy9937 116 ITREEMFQLLRYS 128 (149)
Q Consensus 116 i~~~ef~~~l~~~ 128 (149)
+|++++..++...
T Consensus 125 vs~~~~~~if~~t 137 (694)
T KOG0751|consen 125 VSFEDVADIFGQT 137 (694)
T ss_pred eehHHHHHHHhcc
Confidence 7777777666653
No 93
>KOG0040|consensus
Probab=97.54 E-value=0.0013 Score=55.85 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=84.7
Q ss_pred cccCCCCHHHHHHHhhhcCCC-c-cH-----HHHHHHHHHHHccCCCCcccHHHHHHHHHhhh--ccChHHHHHHHHHHh
Q psy9937 6 CAFDRLGSLVCRELLHNTFDL-V-TE-----EILMERIFCAFDRLCDGVIHLDEWVLGLSCFL--RGTNEELIKFTFLIY 76 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~~~-~-~~-----~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~ 76 (149)
.++|.++.++|...++. .|+ + .. ++.+.++....||+.+|.|+..+|...+-... ...+.+.++.+|+.+
T Consensus 2265 ek~G~Ldhq~F~sCLrs-lgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2265 EKNGRLDHQHFKSCLRS-LGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRAL 2343 (2399)
T ss_pred hhccCCcHHHHHHHHHh-cCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHh
Confidence 45689999999999998 552 2 22 23589999999999999999999999875443 234556899999999
Q ss_pred hcCCCCcccHHHHHHHHHhC-hHHHHHHHHHHhCC----CCCCcccHHHHHHHH
Q psy9937 77 DLNNDGFITREEMFQLLRGT-NEELIKFTFLIYDL----NNDGFITREEMFQLL 125 (149)
Q Consensus 77 D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~d~----~~~g~i~~~ef~~~l 125 (149)
|. +.-+|+..+....|..- -+-.+..|-..++. ...+.++|.+|++.+
T Consensus 2344 ~a-~~~yvtke~~~~~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2344 DA-GKPYVTKEELYQNLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred hc-CCccccHHHHHhcCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 99 77899999876655442 12222233333343 233579999998765
No 94
>KOG0046|consensus
Probab=97.44 E-value=0.00077 Score=51.40 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=26.2
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhC-------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q psy9937 72 TFLIYDLNNDGFITREEMFQLLRGT-------NEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128 (149)
Q Consensus 72 ~f~~~D~~~~g~i~~~ef~~~l~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 128 (149)
.|...| +++|+|+..++..++... .+++++.++...+.|.+|+|++++|+..+...
T Consensus 24 kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 24 KFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 344444 444444444444444443 14444455555555555555555555544333
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.37 E-value=0.0008 Score=39.14 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC------hHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhcccccc
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT------NEELIKFTFLIYDLN----NDGFITREEMFQLLRYSRNQSY 133 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~~~~~~ 133 (149)
++.+|..+.. +.+.++.++|..+|... +.+.+..++..+..+ ..+.+|+++|..+|....+..+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~~ 75 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSIF 75 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBSS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCCC
Confidence 4567777744 67788888888888766 467777777777543 4688999999999876554433
No 96
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.36 E-value=0.00032 Score=31.30 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=14.0
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 102 KFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 102 ~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
..+|..+|.+++|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555566555555554
No 97
>KOG0169|consensus
Probab=97.32 E-value=0.0034 Score=49.92 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHH
Q psy9937 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLI 107 (149)
Q Consensus 29 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~ 107 (149)
...++..+|+..|++.+|.+++.+...++..+........+...|+..+..+++++...++..+.... ...++..+|..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~ 213 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQ 213 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHH
Confidence 34558999999999999999999999999998888888888889999999999999999999988887 23378888888
Q ss_pred hCCCCCCcccHHHHHHHHHhccc
Q psy9937 108 YDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 108 ~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
+-.+ .+.++.+++..++...+.
T Consensus 214 ~s~~-~~~ls~~~L~~Fl~~~q~ 235 (746)
T KOG0169|consen 214 YSHG-KEYLSTDDLLRFLEEEQG 235 (746)
T ss_pred HhCC-CCccCHHHHHHHHHHhcc
Confidence 8644 889999999998887543
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.32 E-value=0.004 Score=41.06 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=67.2
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhc-------------------------------------------------
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLR------------------------------------------------- 62 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~------------------------------------------------- 62 (149)
.+++-...+|.|++|.|...|--..+..+..
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4678888899999999987775444332110
Q ss_pred ----cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----------hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 63 ----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----------NEELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 63 ----~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
.-..+..+.+|..++..+.+.++..|+..+++.- ..-++..++... .+.+|.+..++.+.++
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 0025778889999998888899999999998875 244555555555 5678999998887765
No 99
>KOG4347|consensus
Probab=97.28 E-value=0.0019 Score=50.46 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=64.1
Q ss_pred CCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHH
Q psy9937 11 LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89 (149)
Q Consensus 11 i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef 89 (149)
+...++..+++.+.+-......+.++|...|.+.+|.++|.+++.++..+..+...+.+..+|..+|++++ ..+.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 56667777777654422223347899999999999999999999999999888888999999999999999 8888886
No 100
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.27 E-value=0.00016 Score=44.78 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHH
Q psy9937 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 91 (149)
Q Consensus 30 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~ 91 (149)
...+.-.|..+|.|++|.++..|+..+...+ .+.+.=++..|...|.|++|.|+..|...
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3457888999999999999999998887755 23333356688999999999999999753
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.24 E-value=0.00068 Score=30.16 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHH
Q psy9937 70 KFTFLIYDLNNDGFITREEMFQLLR 94 (149)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~ef~~~l~ 94 (149)
+.+|..+|.+++|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455666666666666666655554
No 102
>KOG0046|consensus
Probab=96.67 E-value=0.012 Score=45.26 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=54.5
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhcc---ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG---TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+...|...| +++|+|+..++..++...... ...+.++.+....+.|.+|.|++++|..++..+
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 677888899 899999999999999887643 346778889999999999999999999977776
No 103
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.45 E-value=0.046 Score=32.34 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC---------------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT---------------NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
++.+.+|..+ .|++|.++...|...|++. .+..++.+|... ..+..|+.++|+.+++..|.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 5566667666 5666777777777766666 255666777765 35678999999999987654
No 104
>KOG0169|consensus
Probab=96.23 E-value=0.18 Score=40.64 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=89.1
Q ss_pred ccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccH
Q psy9937 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86 (149)
Q Consensus 7 ~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 86 (149)
++|.++..+...+++.+.- --....+..+|+..+..+++.+...++......+...+ .+..+|..+-.+ .++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~ 223 (746)
T KOG0169|consen 149 KNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLST 223 (746)
T ss_pred cccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCH
Confidence 4566888888877776332 23344578888888888999999999999888775444 566688887555 889999
Q ss_pred HHHHHHHHhC------hHHHHHHHHHHhC----CCCCCcccHHHHHHHHHhcccc
Q psy9937 87 EEMFQLLRGT------NEELIKFTFLIYD----LNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 87 ~ef~~~l~~~------~~~~~~~~~~~~d----~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
.++..++... +.+.+..+++.+- ....+.++++.|.++|......
T Consensus 224 ~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~ 278 (746)
T KOG0169|consen 224 DDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCN 278 (746)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCC
Confidence 9999999888 4566677776663 2345679999999999865443
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.23 E-value=0.026 Score=32.69 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhcc--ChHHHHHHHHHHhhcC----CCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIYDLN----NDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~D~~----~~g~i~~~ef~~~l~~~ 96 (149)
+..+|..+.. +.+.++.++|..-+...... .+...++.++..|.++ ..+.++.++|...|..-
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5778899966 67899999999999876654 3577788899988665 47899999999988653
No 106
>KOG4666|consensus
Probab=96.17 E-value=0.018 Score=41.84 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
.+..+.+|..||.+++|.+++.|....+.-+ +.+.+.-.|+.|+...||.+.-.+|..++.....
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg 327 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG 327 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC
Confidence 4677889999999999999999988888777 5888999999999999999999998888775433
No 107
>KOG1955|consensus
Probab=96.00 E-value=0.02 Score=43.76 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
+.+..-|+.+..|-+|+|+..--+.++... +-.++..||...|.+.||.+++.||...+..
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 445668899999999999998877777665 6788999999999999999999999998865
No 108
>KOG4065|consensus
Probab=95.89 E-value=0.064 Score=33.08 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhc----------cChHHHHHH----HHHHhhcCCCCcccHHHHHHH
Q psy9937 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR----------GTNEELIKF----TFLIYDLNNDGFITREEMFQL 92 (149)
Q Consensus 27 ~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~----------~~~~~~~~~----~f~~~D~~~~g~i~~~ef~~~ 92 (149)
+++++.--..|...|-++++.++=-|++..+..... -+++.++.. +.+--|.|++|.|++.||.+.
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456655557788899999999999999988876542 123444433 444458889999999999875
Q ss_pred H
Q psy9937 93 L 93 (149)
Q Consensus 93 l 93 (149)
.
T Consensus 143 q 143 (144)
T KOG4065|consen 143 Q 143 (144)
T ss_pred c
Confidence 3
No 109
>KOG4578|consensus
Probab=95.76 E-value=0.0073 Score=43.72 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 68 LIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
.+.+-|..+|.|+++-|+..|++.+=+-+ .......+++..|.|+|-.||+.|++.+|....+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 56778999999999999999876654444 4778889999999999999999999999986555
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=95.53 E-value=0.19 Score=39.95 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=58.5
Q ss_pred CCCcccHHHHHHHHHhhhc--cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC------hHHHHHHHHHHhC------
Q psy9937 44 CDGVIHLDEWVLGLSCFLR--GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT------NEELIKFTFLIYD------ 109 (149)
Q Consensus 44 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~~~~~~~~~~d------ 109 (149)
..|.++|++|....+.+.. ......+..+|..+-. +++.++.++|..+|... +.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999887776642 2355677889999854 44689999999999886 3445555554331
Q ss_pred -CCCCCcccHHHHHHHHHh
Q psy9937 110 -LNNDGFITREEMFQLLRY 127 (149)
Q Consensus 110 -~~~~g~i~~~ef~~~l~~ 127 (149)
..+.+.++++.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112346899999999974
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.16 E-value=0.11 Score=34.47 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC----------------------------------------------------
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT---------------------------------------------------- 96 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------------------------------------------------- 96 (149)
++.=..-||.|+||.|..-|-...++.+
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 3444567899999999999887777776
Q ss_pred -----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 97 -----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 97 -----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
..+..+++|..++..+.+.+|+.|..+|+.....
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 1588999999999988999999999999987544
No 112
>KOG3866|consensus
Probab=95.06 E-value=0.08 Score=38.31 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=16.5
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 103 FTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 103 ~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
.+++..|.|.|..||.+||+..-.
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhhh
Confidence 456677777777777777776543
No 113
>KOG4347|consensus
Probab=95.05 E-value=0.053 Score=42.76 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHhhhcc-ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHH
Q psy9937 48 IHLDEWVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEM 121 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef 121 (149)
+++..|..++..+..- .+....+.+|..+|.+.+|.|++.++...|..+ .-+.+.-+|+.+|.+++ ..+.++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4555555555555432 344557889999999999999999999999888 35667788999999888 7777766
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.64 E-value=0.078 Score=34.67 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=57.5
Q ss_pred HHHHHHHHc---cCCCCcccHHHHHHHHHhhh---ccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 33 MERIFCAFD---RLCDGVIHLDEWVLGLSCFL---RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 33 ~~~~f~~~d---~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
++.+|..|. ......++-..|..+++... ...+...+..+|..+-..+..+|++++|..+|..+ -.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l--------A~ 72 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL--------AE 72 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH--------HH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH--------HH
Confidence 356777773 33446789999999988654 23566778889999877777789999999988773 11
Q ss_pred HhCCCCCCcccHHHHHHHHHhcccccc
Q psy9937 107 IYDLNNDGFITREEMFQLLRYSRNQSY 133 (149)
Q Consensus 107 ~~d~~~~g~i~~~ef~~~l~~~~~~~~ 133 (149)
....+.+ +++++...|.....|..
T Consensus 73 ~~~~~~~---~~~~~~~kl~~~~~P~~ 96 (154)
T PF05517_consen 73 KKGKDKS---SAEELKEKLTAGGGPSA 96 (154)
T ss_dssp HHSCCCT---HHHHHHHHHHTT--SSS
T ss_pred Hhhcccc---cHHHHHHHHHccCcccc
Confidence 1112222 77788877765555433
No 115
>KOG1029|consensus
Probab=93.06 E-value=0.15 Score=41.26 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=52.0
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+..+|+..|+...|.++-.+=..++... ..+...+..+|.+-|.|+||+++.+||.-++...
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 6899999999999999988877777544 4556677889999999999999999998776553
No 116
>KOG2243|consensus
Probab=92.93 E-value=0.23 Score=43.07 Aligned_cols=56 Identities=18% Similarity=0.416 Sum_probs=48.7
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHhC---hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 72 TFLIYDLNNDGFITREEMFQLLRGT---NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 72 ~f~~~D~~~~g~i~~~ef~~~l~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.|+.||++++|.|+..+|.+++..- +..+++-++.....|.+...+|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 5677899999999999999998876 5677888888888888999999999987754
No 117
>KOG1955|consensus
Probab=92.44 E-value=0.4 Score=37.05 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=51.8
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
++-.-|+.+.+|..|+|+=..-+..+.+. ...-+++..+|++.|.++||-+++.||-.++...
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 35667778888999999888777777654 3344778889999999999999999999998877
No 118
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=92.19 E-value=0.72 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHH
Q psy9937 46 GVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLI 107 (149)
Q Consensus 46 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~ 107 (149)
-.++|..+...+........ +..+...|+.=..++|+.+||...++.. +++.+..+...
T Consensus 7 p~~~F~~L~~~l~~~l~~~~---~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~ 66 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPSK---MDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKS 66 (70)
T ss_pred CcccHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777766543333 3334445544467889999999998888 55555555544
No 119
>KOG1265|consensus
Probab=91.86 E-value=6 Score=33.22 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC--------------hHHHHHHHHHHhCCCC-
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT--------------NEELIKFTFLIYDLNN- 112 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--------------~~~~~~~~~~~~d~~~- 112 (149)
.+++.|..++..+ .....++.+|..+..+..-+++.++|..+|..- ....+..++..|-.|.
T Consensus 205 f~~e~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred ccHHHHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 3455566666655 344567789999988888899999999999876 3677888888886554
Q ss_pred ---CCcccHHHHHHHHHhcccc
Q psy9937 113 ---DGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 113 ---~g~i~~~ef~~~l~~~~~~ 131 (149)
+|.++.+-|+++++...+.
T Consensus 282 ~a~~gqms~dgf~ryl~gdEn~ 303 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMGDENA 303 (1189)
T ss_pred hhhccccchhhhHHHhhCCccc
Confidence 5899999999999874443
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.67 E-value=1.5 Score=28.70 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCHHHHHHHhhhcCCCcc---HHHHHHHHHHHHccCCCCcccHHHHHHHHHhh
Q psy9937 11 LGSLVCRELLHNTFDLVT---EEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 60 (149)
Q Consensus 11 i~~~e~~~~~~~~~~~~~---~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~ 60 (149)
++-..|..+++. ++.+. ....+.-+|.++-..+...|+|++|..+|..+
T Consensus 19 m~~~~F~Kl~kD-~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 19 MDSKNFAKLCKD-CGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp EEHHHHHHHHHH-TSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-cCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 777888888887 44221 22235778888765555668888888888654
No 121
>KOG0035|consensus
Probab=91.41 E-value=1.5 Score=36.39 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=66.6
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChH--HHH---HHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE--ELI---KFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIK 102 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~--~~~---~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~ 102 (149)
++.+|+.+++...|..+.++|+.++..++...-. ..+ ..+...-|++.-|.+++.+|...+... ....+-
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i 828 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAI 828 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHH
Confidence 7889999999888999999999999888765432 223 334444566677899999999988877 355555
Q ss_pred HHHHHhCCCCCCcccHHHHHH
Q psy9937 103 FTFLIYDLNNDGFITREEMFQ 123 (149)
Q Consensus 103 ~~~~~~d~~~~g~i~~~ef~~ 123 (149)
..|..+-+++. +|..+|++.
T Consensus 829 ~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 829 LAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHcchh-HHHHHHHHh
Confidence 66666655543 788888887
No 122
>KOG4286|consensus
Probab=91.13 E-value=0.78 Score=37.27 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC----------------
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT---------------- 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------------- 96 (149)
+.-+++.||+.++|.|..-+|+..+..+++...+++++.+|.....++.- ++...|...|.++
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq-~~q~~l~lLL~dliqipr~lGE~aAfGgs 550 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ-CDQRRLGLLLHDLIQIPRQLGEVAAFGGS 550 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh-HHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Confidence 56788999999999999999999999999999999999999998665543 3355666555555
Q ss_pred -hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 97 -NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 97 -~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
-+--++.+|. ..++...|++..|..++..-+..
T Consensus 551 NvepsvrsCF~--~v~~~pei~~~~f~dw~~~epqs 584 (966)
T KOG4286|consen 551 NIEPSVRSCFQ--FVNNKPEIEAALFLDWMRLEPQS 584 (966)
T ss_pred CCChHHHHHHH--hcCCCCcchHHHHHHHhccCcch
Confidence 1344566676 34567789999999988765543
No 123
>KOG3555|consensus
Probab=91.12 E-value=0.31 Score=35.92 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.+.=||..+|.|.+|.++..|+..+-. +..+.=++-.|...|...+|.|+-.|.=.-+...
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 367899999999999999999887653 3455667889999999999999999875554443
No 124
>KOG4578|consensus
Probab=90.20 E-value=0.24 Score=36.21 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.--|..+|+|.++.|+-.|++..=..+.. .....=.+.+|+..|.|+|.+|++.|+..-|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 556688899999999998886654443332 2334446778899999999999999998887764
No 125
>KOG0039|consensus
Probab=90.15 E-value=1 Score=36.41 Aligned_cols=63 Identities=29% Similarity=0.444 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC------------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT------------NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 64 ~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
..+..++..|..+|. ++|.++.+++..++... ..+....++...|.+..|.+.++++..++..
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 344445555555544 44555555554444333 2333444455555555555555555444443
No 126
>KOG0042|consensus
Probab=89.82 E-value=0.68 Score=36.47 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=55.7
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
.+.-|..+|.+..|.++.....++++.. +++..+++.+..|.+..|.+...||.+++......
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 4567899999999999999999999887 68889999999999999999999999998876554
No 127
>KOG4301|consensus
Probab=88.61 E-value=2.9 Score=30.92 Aligned_cols=93 Identities=14% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC---------------h
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT---------------N 97 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------------~ 97 (149)
+..+...+|+.+.|.++.-.....+..++.+...+..+.+|... .+.+|-+..-.+..++... +
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg~t 190 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYT 190 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchH
Confidence 45667778999999999888888888888888889999999988 4566776666666666665 2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccc
Q psy9937 98 EELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQ 131 (149)
Q Consensus 98 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 131 (149)
+..++..|. .+..++++.|+..+...+.+
T Consensus 191 e~~a~~cf~-----qqrKv~Ln~fldtl~sdp~p 219 (434)
T KOG4301|consen 191 ELSARLCFL-----QQRKVELNQFLDTLMSDPPP 219 (434)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhcCCCc
Confidence 333443333 34567888888877766554
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=87.87 E-value=1.8 Score=34.65 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHhC------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhccc
Q psy9937 80 NDGFITREEMFQLLRGT------NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130 (149)
Q Consensus 80 ~~g~i~~~ef~~~l~~~------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 130 (149)
+.|.+++++|..+.+.+ +..++..+|..+-. +.+.++.++|..+|...+.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCC
Confidence 46899999998887776 36799999999964 4478999999999987665
No 129
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.41 E-value=0.33 Score=27.23 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCC-------CCCCcccHHHHHH
Q psy9937 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDL-------NNDGFITREEMFQ 123 (149)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~ 123 (149)
.+.+..+|+.+ .+++++|+.+++.+.|..-.. ..+...+.. ...|..+|..|..
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~a---ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQA---EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCCH---HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCcHHH---HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 35566699999 788899999999988766422 333333321 1236788888764
No 130
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.36 E-value=3.2 Score=26.64 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCC-------CCcccHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCC
Q psy9937 9 DRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLC-------DGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNN 80 (149)
Q Consensus 9 ~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~-------~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~ 80 (149)
+.||+.||..+-+-+ --+...++.+...|..++ .+.|+++.|...+..... ..+++.++.+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~---eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS---EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHH---HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 457777777766531 111223566666664333 456777777777765442 456677777777775544
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=85.93 E-value=5.9 Score=25.45 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHHHhh-------cCCCCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCC
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFLIYD-------LNNDGFITREEMFQLLRGT-----NEELIKFTFLIYDLNN 112 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D-------~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~ 112 (149)
++..||..+-....+.. .+++.+...|. -+..+.|+++.|+.+|+.. +++....+|..|-...
T Consensus 8 lsp~eF~qLq~y~eys~--kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 8 LSPEEFAQLQKYSEYST--KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred cCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 45555555544433221 23333444442 2335589999999999988 7888899999995443
No 132
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.15 E-value=4.3 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcC---CCCcccHHHHHHHHHhChH
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLN---NDGFITREEMFQLLRGTNE 98 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~---~~g~i~~~ef~~~l~~~~~ 98 (149)
++.-|..+.. +|.+..+.|..|+..- .+.+....+|..+-.- ....|+.+|+..+|..+++
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CIGM~---dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECIGMK---DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHhCc--CCcccHHHHHHhcCCc---ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 5666666655 6788888888887642 4455555566555321 1356888888888877643
No 133
>KOG0042|consensus
Probab=83.98 E-value=4 Score=32.46 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
....|+.+|.++.|.++..+.+..++.....-+++.+....+..|.+-+|.+...||.+.....
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 5678899999999999999999999988766677778888888888889999999998888776
No 134
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=83.60 E-value=7.2 Score=24.63 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=14.7
Q ss_pred HHHHHHHHccCC--CCcccHHHHHHHHHhh
Q psy9937 33 MERIFCAFDRLC--DGVIHLDEWVLGLSCF 60 (149)
Q Consensus 33 ~~~~f~~~d~~~--~g~i~~~ef~~~~~~~ 60 (149)
+.++|.....+. +..++..++..++..+
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i 72 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSI 72 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHH
Confidence 345555554432 3457777777766543
No 135
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=82.82 E-value=7.4 Score=22.76 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 45 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 45 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.-.|.+.+|...+..............+=..+|.-++++|+.-||-.+.+..
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3568999999999888766555554545577888899999999988877765
No 136
>KOG1707|consensus
Probab=82.33 E-value=13 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 99 ELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 99 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
+.+..+|..+|.|+||.++-+|+..+...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 33444444445444555544444444443
No 137
>KOG4004|consensus
Probab=82.13 E-value=0.6 Score=31.76 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=43.8
Q ss_pred HHHHhhcC-CCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 72 TFLIYDLN-NDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 72 ~f~~~D~~-~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
-|..+|.. .+|+++..|+..+-.-+ .+..+...|...|.|+||.|+..||-.++-.
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eeccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 34455654 58999999987665444 4777888899999999999999999887753
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=81.83 E-value=8.8 Score=30.68 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC------hHHHHHHHHHHhCCC----CCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT------NEELIKFTFLIYDLN----NDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 127 (149)
..+..+|..+-. ++.++.++|..+|... +.+.+..++..+... ..|.++.+.|..+|..
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 334444444432 1345555555555443 123344444444221 2245666666666544
No 139
>KOG0035|consensus
Probab=80.74 E-value=7.1 Score=32.72 Aligned_cols=63 Identities=13% Similarity=-0.079 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC---------hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT---------NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
..++..|..++....|..+.++|...+..+ ...++..+...-|.+.-|.+++.+|...|..-.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 557889999999999999999999999998 133444455555666678999999999887643
No 140
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.10 E-value=11 Score=30.25 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhC------hHHHHHHHHHHhCC-CCCCcccHHHHHHHHHh
Q psy9937 68 LIKFTFLIYDLNNDGFITREEMFQLLRGT------NEELIKFTFLIYDL-NNDGFITREEMFQLLRY 127 (149)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~ef~~~l~~~------~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~ 127 (149)
.+..+|..+.. ++.++.++|..+|... +.+.+..++..+.. ...+.++++.|..+|..
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44445555432 2455555555555443 23334444444311 12345666666666654
No 141
>KOG1265|consensus
Probab=80.07 E-value=15 Score=31.03 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=61.9
Q ss_pred CCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhcc----------ChHHHHHHHHHHhhcC-
Q psy9937 11 LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG----------TNEELIKFTFLIYDLN- 79 (149)
Q Consensus 11 i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~----------~~~~~~~~~f~~~D~~- 79 (149)
.+.+.|..++..+ .+...+.++|..+..+..-.++.+++...+....++ .....+..+.+.+.++
T Consensus 205 f~~e~f~~~l~kl----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhc----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 5566777777774 344567899999988877899999999999865543 2356677788888666
Q ss_pred ---CCCcccHHHHHHHHHh
Q psy9937 80 ---NDGFITREEMFQLLRG 95 (149)
Q Consensus 80 ---~~g~i~~~ef~~~l~~ 95 (149)
.+|.++.+.|...+..
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 4789999999888776
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=78.85 E-value=4.2 Score=22.86 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHhC-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 83 FITREEMFQLLRGT-NEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 83 ~i~~~ef~~~l~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
.+++..+..+++.. +......+...|+.=..+.|+.+||++.++..-
T Consensus 8 ~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56777777777776 555566666666666789999999999998643
No 143
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=77.74 E-value=11 Score=22.77 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcccccc
Q psy9937 68 LIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLIYDL---NNDGFITREEMFQLLRYSRNQSY 133 (149)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~d~---~~~g~i~~~ef~~~l~~~~~~~~ 133 (149)
.++.-|..+.. +|.|....|.+.+..- +.+.+.++|...-. -....|+.+|+..+...+..+.+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~sF 98 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQSF 98 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH---H
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhccCC
Confidence 34556777755 8899999999988865 57777777766532 12578999999998887665543
No 144
>KOG1707|consensus
Probab=77.53 E-value=4.2 Score=32.39 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHH--HHhhcCCCCcccHHHHHHHHHhC
Q psy9937 31 ILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTF--LIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 31 ~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f--~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.++..+|..+|.+++|.++-.|+..+++.....+ +-..+ ..--.+..|.+++.-|...|..+
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p----W~~~~~~~~t~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP----WTSSPYKDSTVKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC----CCCCcccccceecccceeehhhHHHHHHHH
Confidence 3478999999999999999999999998764333 00000 00012267889999888888777
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=77.32 E-value=3 Score=25.86 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 96 TNEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 96 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
++++.++.++..+-.|..|+|.|.||+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 35788999999999999999999999987763
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=73.83 E-value=20 Score=28.91 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC-------hHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT-------NEELIKFTFLIY-------DLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-------~~~~~~~~~~~~-------d~~~~g~i~~~ef~~~l~~ 127 (149)
..+..+|..+..+ ++.++.++|..+|... +.+.+..++..+ ..-+.+.++.+.|..+|..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4455566666322 2566666666666554 122333444322 1113346888888887765
No 147
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=73.76 E-value=16 Score=21.62 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhc-----------cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-----------GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~-----------~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.++.+|+.+ .|.+|.++...|..++..... +..+..++..|..- ..+-.|+.++|...+..-
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 357888888 467899999998888775432 33566677777775 345579999999887763
No 148
>PRK00523 hypothetical protein; Provisional
Probab=72.55 E-value=7.6 Score=21.89 Aligned_cols=27 Identities=19% Similarity=-0.037 Sum_probs=12.1
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHH
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFL 74 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~ 74 (149)
|+-+.....+......+++..++.+.+
T Consensus 40 ine~mir~M~~QMGqKPSekki~Q~m~ 66 (72)
T PRK00523 40 ITENMIRAMYMQMGRKPSESQIKQVMR 66 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 444444444444444444444444433
No 149
>KOG3866|consensus
Probab=71.60 E-value=6.3 Score=28.94 Aligned_cols=87 Identities=22% Similarity=0.183 Sum_probs=50.9
Q ss_pred cHHHHHHHHHhhhc-cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 49 HLDEWVLGLSCFLR-GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 49 ~~~ef~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
|-.++..+|..... .+..-.-+..|..+|.|++|+++-.|+...+.. ++..++..-+.+.| . .|...-...
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk----ELEKvYdpkNeeDD-M---~EmeEErlR 296 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTK----ELEKVYDPKNEEDD-M---KEMEEERLR 296 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHH----HHHHhcCCCCcchH-H---HHHHHHHHH
Confidence 56777777776643 233344567889999999999999998777766 34444433332222 2 222222222
Q ss_pred cccccccccccccCCc
Q psy9937 128 SRNQSYNRLDLNVGTL 143 (149)
Q Consensus 128 ~~~~~~~~~~~~~~~~ 143 (149)
+....++.++.|++.+
T Consensus 297 MREHVMk~vDtNqDRl 312 (442)
T KOG3866|consen 297 MREHVMKQVDTNQDRL 312 (442)
T ss_pred HHHHHHHhcccchhhh
Confidence 3344566666666543
No 150
>KOG0998|consensus
Probab=71.38 E-value=2.7 Score=35.19 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
..+..+|...|.+.+|.|+..+....+... +...+..+|...|..+.|.+++.+|.-.+..
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 445568999999999999999998888776 6888999999999999999999988776654
No 151
>KOG1264|consensus
Probab=70.66 E-value=61 Score=27.56 Aligned_cols=123 Identities=9% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHH---HHHHH--hhcCCCCcc
Q psy9937 10 RLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIK---FTFLI--YDLNNDGFI 84 (149)
Q Consensus 10 ~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~---~~f~~--~D~~~~g~i 84 (149)
.|+..+++.++....-.++....+.+-|.... -+.+.++|.+|..+...+........+. ..|-. -+...--.|
T Consensus 160 ~isard~k~~l~qvn~k~~~~kfl~e~~ted~-~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV 238 (1267)
T KOG1264|consen 160 SISARDLKTILPQVNFKVSSAKFLKEKFTEDG-ARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVV 238 (1267)
T ss_pred heeHHhhhcccccceEEechHHHHHHHHhHhh-hccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEe
Confidence 37788888877753333444444444444333 3457799999999888775433221111 11111 122222469
Q ss_pred cHHHHHHHHHhCh-------HHHHHHHHHHhCCC-----CCCcccHHHHHHHHHhcccccc
Q psy9937 85 TREEMFQLLRGTN-------EELIKFTFLIYDLN-----NDGFITREEMFQLLRYSRNQSY 133 (149)
Q Consensus 85 ~~~ef~~~l~~~~-------~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~~~~~~ 133 (149)
.+.||+++|.... ...+...++.|-.| ....++..||+.+|-...+..+
T Consensus 239 ~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreNslW 299 (1267)
T KOG1264|consen 239 YLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRENSLW 299 (1267)
T ss_pred eHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcccccc
Confidence 9999999988771 22344444444222 2457999999999877666543
No 152
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.21 E-value=10 Score=21.19 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=15.5
Q ss_pred cccHHHHHHHHHhhhccChHHHHHHHHHH
Q psy9937 47 VIHLDEWVLGLSCFLRGTNEELIKFTFLI 75 (149)
Q Consensus 47 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~ 75 (149)
.|+-+.....+...+..+++..+..+++.
T Consensus 38 pine~~iR~M~~qmGqKpSe~kI~Qvm~~ 66 (71)
T COG3763 38 PINEEMIRMMMAQMGQKPSEKKINQVMRS 66 (71)
T ss_pred CCCHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45555555555555555555555544443
No 153
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=69.76 E-value=8.7 Score=21.17 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHhhhccChHHHHHHHHH
Q psy9937 47 VIHLDEWVLGLSCFLRGTNEELIKFTFL 74 (149)
Q Consensus 47 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 74 (149)
.|+-+....++...+..+++..++.+.+
T Consensus 31 pine~mir~M~~QMG~kpSekqi~Q~m~ 58 (64)
T PF03672_consen 31 PINEKMIRAMMMQMGRKPSEKQIKQMMR 58 (64)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3555555555555555555554444443
No 154
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.65 E-value=7.8 Score=16.24 Aligned_cols=14 Identities=21% Similarity=0.193 Sum_probs=6.8
Q ss_pred cCCCCcccHHHHHH
Q psy9937 42 RLCDGVIHLDEWVL 55 (149)
Q Consensus 42 ~~~~g~i~~~ef~~ 55 (149)
.|++|.|+.-++..
T Consensus 2 vN~DG~vna~D~~~ 15 (21)
T PF00404_consen 2 VNGDGKVNAIDLAL 15 (21)
T ss_dssp TTSSSSSSHHHHHH
T ss_pred CCCCCcCCHHHHHH
Confidence 34555555555443
No 155
>PLN02228 Phosphoinositide phospholipase C
Probab=66.20 E-value=38 Score=27.26 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhcc--ChHHHHHHHHHHhhcC----CCCcccHHHHHHHHHhC
Q psy9937 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIYDLN----NDGFITREEMFQLLRGT 96 (149)
Q Consensus 29 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~D~~----~~g~i~~~ef~~~l~~~ 96 (149)
+.+.+..+|..+..+ +.++.++|...+...+.. ...+.++.++..+... ..|.++.+.|...|...
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 345678888888643 579999999888776643 3456677788887543 34679999999988653
No 156
>PRK01844 hypothetical protein; Provisional
Probab=65.91 E-value=12 Score=21.17 Aligned_cols=28 Identities=7% Similarity=-0.034 Sum_probs=13.3
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHHH
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFLI 75 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~~ 75 (149)
|+-+.....+...+..+++..++.+.+.
T Consensus 39 ine~mir~Mm~QMGqkPSekki~Q~m~~ 66 (72)
T PRK01844 39 INEQMLKMMMMQMGQKPSQKKINQMMSA 66 (72)
T ss_pred CCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4444444455444444444444444443
No 157
>KOG0998|consensus
Probab=64.64 E-value=2.7 Score=35.22 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=53.4
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.++|...|.+.+|.|+..+....+.. .+.....+..+|...|..+.|.+++.+|.-.+..+
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 677899999999999999999988876 45666788889999999999999999887766555
No 158
>KOG1954|consensus
Probab=64.63 E-value=10 Score=28.88 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy9937 70 KFTFLIYDLNNDGFITREEMFQLLRGT--NEELIKFTFLIYDLNNDGFITREEMFQL 124 (149)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 124 (149)
..+|-.+. .-+|+|+...-+.-+-.. +...+-.+|+..|.|.||.++-+||.-+
T Consensus 447 de~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44555553 246777765544433332 6778889999999999999999999743
No 159
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.60 E-value=37 Score=21.45 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHhhcCC--CCcccHHHHHHHHHhC----------------------hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 70 KFTFLIYDLNN--DGFITREEMFQLLRGT----------------------NEELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 70 ~~~f~~~D~~~--~g~i~~~ef~~~l~~~----------------------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
..+|..+..+. +..|+..++...+..+ .+-.++.++..||.+..|.|+.-.|...+
T Consensus 44 ~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 44 IEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 34555554332 3457777777776666 12345688999999999999999998766
Q ss_pred H
Q psy9937 126 R 126 (149)
Q Consensus 126 ~ 126 (149)
.
T Consensus 124 ~ 124 (127)
T PF09068_consen 124 I 124 (127)
T ss_dssp H
T ss_pred H
Confidence 4
No 160
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=61.70 E-value=30 Score=20.24 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=37.0
Q ss_pred CcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 82 GFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 82 g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
--|.+.+|...|... ...+..++=..+|...+++||--||-.+.+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 469999999999988 3455566777889999999999999887764
No 161
>KOG4004|consensus
Probab=61.53 E-value=3.8 Score=28.05 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHH
Q psy9937 45 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 93 (149)
Q Consensus 45 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l 93 (149)
+|.+|-.|++.+-.-+ .+.+.-....|...|.|++|+|+.+|...-+
T Consensus 202 d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 5666666665554333 2223334446666677777777766655443
No 162
>KOG1785|consensus
Probab=55.89 E-value=93 Score=24.00 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=58.1
Q ss_pred CCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHHhCCCCCCc---ccHHH
Q psy9937 45 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLIYDLNNDGF---ITREE 120 (149)
Q Consensus 45 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~d~~~~g~---i~~~e 120 (149)
...+.|..|..++.......+.-+.-.+=..+|...+++|+.-||-.+-+.+ +=..+-.=|+.......|+ ++|+|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYDE 267 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDE 267 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHHH
Confidence 4568899999999887665544443335567899999999999987777665 2222333355556667775 78898
Q ss_pred HHHHHHhc
Q psy9937 121 MFQLLRYS 128 (149)
Q Consensus 121 f~~~l~~~ 128 (149)
...-|...
T Consensus 268 Vk~RLqk~ 275 (563)
T KOG1785|consen 268 VKARLQKY 275 (563)
T ss_pred HHHHHHHH
Confidence 88777653
No 163
>PLN02223 phosphoinositide phospholipase C
Probab=54.84 E-value=68 Score=25.69 Aligned_cols=60 Identities=10% Similarity=-0.074 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHH---HhC------hHHHHHHHHHHhCC--------CCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLL---RGT------NEELIKFTFLIYDL--------NNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l---~~~------~~~~~~~~~~~~d~--------~~~g~i~~~ef~~~l~~ 127 (149)
+.++.+|..+ ..++|.++.+.+..++ ... +.+.+..++..+-. ...+.++.+.|..+|..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4445555555 2444555555555555 222 23333333333211 12256888888888765
No 164
>PLN02230 phosphoinositide phospholipase C 4
Probab=54.76 E-value=83 Score=25.61 Aligned_cols=66 Identities=8% Similarity=-0.142 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccC---hHHHHHHHHHHhh-------cCCCCcccHHHHHHHHHh
Q psy9937 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT---NEELIKFTFLIYD-------LNNDGFITREEMFQLLRG 95 (149)
Q Consensus 29 ~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~f~~~D-------~~~~g~i~~~ef~~~l~~ 95 (149)
+...+..+|..+..++ +.++.++|...+...+... ..+.++.++..+- .-..+.++.+.|...|..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3456799999996444 7899999999998877432 3445555555431 123456999999998865
No 165
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=53.24 E-value=51 Score=21.10 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHhC-------------hHHHHHHHHHHhCCCCCCc-ccHHHHHHHH
Q psy9937 80 NDGFITREEMFQLLRGT-------------NEELIKFTFLIYDLNNDGF-ITREEMFQLL 125 (149)
Q Consensus 80 ~~g~i~~~ef~~~l~~~-------------~~~~~~~~~~~~d~~~~g~-i~~~ef~~~l 125 (149)
++..|+.+||.+.+..- ..+.+..+...+...+.+. +|..|.+++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHHh
Confidence 55678888888888776 4778888888887766554 8888877653
No 166
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=52.85 E-value=35 Score=19.88 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhCCCCCCccc
Q psy9937 97 NEELIKFTFLIYDLNNDGFIT 117 (149)
Q Consensus 97 ~~~~~~~~~~~~d~~~~g~i~ 117 (149)
++.++.++|+.+-.|++..+.
T Consensus 57 S~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 57 SQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CHHHHHHHHHHHHhcCcccEE
Confidence 466777777777766665543
No 167
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=51.97 E-value=54 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=10.9
Q ss_pred HccCCCCcccHHHHHHHHH
Q psy9937 40 FDRLCDGVIHLDEWVLGLS 58 (149)
Q Consensus 40 ~d~~~~g~i~~~ef~~~~~ 58 (149)
+|...+..|+.+++..++.
T Consensus 12 YDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cCCCccceeeHHHHHHHHH
Confidence 3555555666666666554
No 168
>PLN02222 phosphoinositide phospholipase C 2
Probab=51.96 E-value=98 Score=25.14 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHccCCCCcccHHHHHHHHHhhhcc--ChHHHHHHHHHHhhc-CCCCcccHHHHHHHHHhC
Q psy9937 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--TNEELIKFTFLIYDL-NNDGFITREEMFQLLRGT 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~D~-~~~g~i~~~ef~~~l~~~ 96 (149)
.+..+|..+.. ++.++.++|...+...+.. ...+.++.++..+.. ...+.++++.|...|..-
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 56888888864 4689999999988877653 345666777777632 245679999999988653
No 169
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=51.27 E-value=94 Score=23.26 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH--ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 29 EEILMERIFCAF--DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 29 ~~~~~~~~f~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
..+.+..+...+ |.|+.-.+--++|...+..+........+..+-..+-..=+|.|-+.|+..-++.. ...+.++|.
T Consensus 39 ~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-nP~lae~F~ 117 (357)
T PLN02508 39 DMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFT 117 (357)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC-ChHHHHHHH
Confidence 444567777766 44444455556676656554333334445555566677778999999988877663 355677777
Q ss_pred HhCCCC
Q psy9937 107 IYDLNN 112 (149)
Q Consensus 107 ~~d~~~ 112 (149)
.+..|.
T Consensus 118 lMaRDE 123 (357)
T PLN02508 118 LMSRDE 123 (357)
T ss_pred HhCchh
Confidence 776553
No 170
>KOG2871|consensus
Probab=49.28 E-value=11 Score=28.36 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhcCCCCcccHHHHHHHHHhCh-----HHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy9937 65 NEELIKFTFLIYDLNNDGFITREEMFQLLRGTN-----EELIKFTFLIYDLNNDGFITREEMFQLL 125 (149)
Q Consensus 65 ~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 125 (149)
+.+.++++|..+|+.++|+|+-.-+..++.... .+.+..+=+..|..+-|.|-.++|..-.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 467788899999999999999998888877762 2333333334455555666555555433
No 171
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=48.90 E-value=85 Score=21.49 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=26.6
Q ss_pred cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHHh
Q psy9937 63 GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLIY 108 (149)
Q Consensus 63 ~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~ 108 (149)
+...+....+-..|..|..|.|+...+....+.- .++.+.+.+..+
T Consensus 115 g~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrrl~i~D~~w~~am~aI 161 (195)
T PF11363_consen 115 GADPELRALVNRAFQVDKEGNLNTSRILGLRRLEIDDERWQEAMDAI 161 (195)
T ss_pred CCChHHHHHHHHHHhcCCCCCcCHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4444445556677777888888887655544432 344455555444
No 172
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.24 E-value=75 Score=20.65 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=5.2
Q ss_pred cccHHHHHHHHH
Q psy9937 83 FITREEMFQLLR 94 (149)
Q Consensus 83 ~i~~~ef~~~l~ 94 (149)
.+++..|...++
T Consensus 82 a~d~y~fts~l~ 93 (148)
T COG4103 82 AIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 173
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=47.44 E-value=1.4e+02 Score=23.73 Aligned_cols=100 Identities=17% Similarity=0.025 Sum_probs=60.1
Q ss_pred CCHHHHHHHhh-hcCCC-ccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHH
Q psy9937 11 LGSLVCRELLH-NTFDL-VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 88 (149)
Q Consensus 11 i~~~e~~~~~~-~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e 88 (149)
.|..||.-++- .+++. -+.+..+.-+|+..|.++==.+++.++..++..+.. ..+..-.. -|.|+..-
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e-----~~~e~~~~-----yG~is~aS 175 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE-----NAKELSAE-----YGNISSAS 175 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh-----hHHHHHHH-----cCCccHHH
Confidence 45555544333 33441 233444889999999877668999999999988721 11212222 37788888
Q ss_pred HHHHHHhC--------------hHHHHHHHHHHhCCCCCCcccHHHH
Q psy9937 89 MFQLLRGT--------------NEELIKFTFLIYDLNNDGFITREEM 121 (149)
Q Consensus 89 f~~~l~~~--------------~~~~~~~~~~~~d~~~~g~i~~~ef 121 (149)
.-.+++.+ +.-.+..+++ .|.++.|.|+.-+.
T Consensus 176 ~gaI~R~ll~LE~qG~d~FFGEPaldi~Dl~r-~~~~GrG~IniL~a 221 (502)
T PF05872_consen 176 IGAIQRALLVLEQQGGDQFFGEPALDIEDLMR-TDADGRGVINILAA 221 (502)
T ss_pred HHHHHHHHHHHHHcchHhhCCCccCCHHHHhc-cCCCCCEEEEEEEh
Confidence 88888877 1122233332 34577787765433
No 174
>KOG2243|consensus
Probab=47.16 E-value=45 Score=30.38 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=45.1
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 35 RIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 35 ~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
..|+.+|+++.|.|+-.+|...+...... +...+..+...-..+.+...++++|..-+..-
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y-tqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY-TQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc-hhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 45777899999999999999988765432 23344545556667778889999998876654
No 175
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=47.13 E-value=32 Score=19.72 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=5.3
Q ss_pred CcccHHHHHHHHH
Q psy9937 46 GVIHLDEWVLGLS 58 (149)
Q Consensus 46 g~i~~~ef~~~~~ 58 (149)
|.||+.++...+.
T Consensus 20 G~lT~~eI~~~L~ 32 (82)
T PF03979_consen 20 GYLTYDEINDALP 32 (82)
T ss_dssp SS-BHHHHHHH-S
T ss_pred CcCCHHHHHHHcC
Confidence 4455555544444
No 176
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=43.80 E-value=28 Score=18.06 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=8.5
Q ss_pred ccccCCCCHHHHHHHhh
Q psy9937 5 FCAFDRLGSLVCRELLH 21 (149)
Q Consensus 5 ~~~~~~i~~~e~~~~~~ 21 (149)
+..+|.++..+|+.++.
T Consensus 5 ~~~~~~itv~~~rd~lg 21 (50)
T PF09107_consen 5 LQKNGEITVAEFRDLLG 21 (50)
T ss_dssp HHTTSSBEHHHHHHHHT
T ss_pred HhcCCcCcHHHHHHHHC
Confidence 33445555555555553
No 177
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=42.38 E-value=71 Score=18.70 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 44 CDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 44 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
++|.|+-+++-.+... .++.+.++.++...- ..|....+-|..+|..+
T Consensus 26 ~n~~it~E~y~~V~a~---~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~ 73 (85)
T cd08324 26 KNDYFSTEDAEIVCAC---PTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQL 73 (85)
T ss_pred ccCCccHHHHHHHHhC---CCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHH
Confidence 3678888888777665 466777887777743 34556677777777765
No 178
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.29 E-value=1.4e+02 Score=21.99 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHhhhcCCCc------------cHHHHHHHHHHHHccCCC--CcccHHHHHHHH-Hhhhc------cChHH
Q psy9937 9 DRLGSLVCRELLHNTFDLV------------TEEILMERIFCAFDRLCD--GVIHLDEWVLGL-SCFLR------GTNEE 67 (149)
Q Consensus 9 ~~i~~~e~~~~~~~~~~~~------------~~~~~~~~~f~~~d~~~~--g~i~~~ef~~~~-~~~~~------~~~~~ 67 (149)
+.++.+||-.+++-+...+ ..+..+.++.+.++.... --|.=++++..+ +.+.. ...-+
T Consensus 108 ~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 108 CELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred CCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 4599999999888622111 122335566666653221 234445555544 33322 11223
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHhC-hHHHHHHHHHHhCCCCC------CcccHHHHHHHHHhcccccccccccc
Q psy9937 68 LIKFTFLIYDLNNDGFITREEMFQLLRGT-NEELIKFTFLIYDLNND------GFITREEMFQLLRYSRNQSYNRLDLN 139 (149)
Q Consensus 68 ~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~~~d~~~~------g~i~~~ef~~~l~~~~~~~~~~~~~~ 139 (149)
.+..+... ..|.++..-+..++..+ .-..+..+|+.++.... ..=.+.+|++.+....+..+-+...+
T Consensus 188 vV~~l~~t----~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 188 VVDFLVST----FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhc----cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33333322 23677777777766666 34567778877764332 24568899998888777644333333
No 179
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=42.16 E-value=63 Score=20.08 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFI 116 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i 116 (149)
+.++.+....-.++...|+...+..+++. ++++..+|+..-.-+.|.+
T Consensus 57 EIlelA~n~ak~~k~krItp~hi~lAi~n--D~EL~~L~~~vtI~~ggv~ 104 (115)
T cd00074 57 EVLELAGNAARDNKKKRITPRHLQLAVRN--DEELNKLLKGVTIASGGVL 104 (115)
T ss_pred HHHHHHHHHHHHcCCCeEcHHHHHHHHhc--cHHHHHHHcCCcccCCccC
Confidence 45555666655566677888888777777 7778888875444444543
No 180
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=41.74 E-value=68 Score=18.30 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=20.3
Q ss_pred ccCCCCcccHHHHHHHHHhhhccChHHHH
Q psy9937 41 DRLCDGVIHLDEWVLGLSCFLRGTNEELI 69 (149)
Q Consensus 41 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 69 (149)
..|..|.|+++.|++.|.....-.....+
T Consensus 12 ~~n~~G~iTl~gfLa~W~l~T~ld~~~tl 40 (76)
T PF08355_consen 12 VTNEKGWITLQGFLAQWSLTTLLDPKRTL 40 (76)
T ss_pred EEcCCCcCcHHHHHHHHHHHHHhCHHHHH
Confidence 35778999999999998866444433333
No 181
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.69 E-value=31 Score=16.03 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.2
Q ss_pred CCcccHHHHHHHHHhc
Q psy9937 113 DGFITREEMFQLLRYS 128 (149)
Q Consensus 113 ~g~i~~~ef~~~l~~~ 128 (149)
.|.|++++++.+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5788888888887653
No 182
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=40.95 E-value=1.1e+02 Score=22.88 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHH--ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 29 EEILMERIFCAF--DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 29 ~~~~~~~~f~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
..+.++.+...+ |.|+.=.+--++|...+..+........++.+-+.+-..=+|.|-+.|+..-++.. ...+.++|.
T Consensus 39 ~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~-nP~lae~F~ 117 (351)
T CHL00185 39 NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK-NPLLAEGFL 117 (351)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC-CcHHHHHHH
Confidence 344466677666 34444445556676666554333333445555566666678888888888877653 345666666
Q ss_pred HhCCC
Q psy9937 107 IYDLN 111 (149)
Q Consensus 107 ~~d~~ 111 (149)
.+..|
T Consensus 118 lMaRD 122 (351)
T CHL00185 118 LMSRD 122 (351)
T ss_pred HHhhh
Confidence 66544
No 183
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=40.89 E-value=27 Score=19.26 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=17.1
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 106 LIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 106 ~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
+.||...+.+|++++..++++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~ 33 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGE 33 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCC
Confidence 356777777888888887777543
No 184
>KOG4286|consensus
Probab=40.85 E-value=2.3e+02 Score=24.08 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCC-CCcccHHHHHHHHHhhhc-------------cChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-
Q psy9937 32 LMERIFCAFDRLC-DGVIHLDEWVLGLSCFLR-------------GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT- 96 (149)
Q Consensus 32 ~~~~~f~~~d~~~-~g~i~~~ef~~~~~~~~~-------------~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~- 96 (149)
...++|...+..+ +...+..+.++++..... ...+.-+..++.+||+.++|.|..-+|+-.+..+
T Consensus 421 l~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lc 500 (966)
T KOG4286|consen 421 LALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLC 500 (966)
T ss_pred HHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHh
Confidence 4567777776654 345666666665543211 1122335778899999999999999998888777
Q ss_pred ---hHHHHHHHHHHhCCCCCCc
Q psy9937 97 ---NEELIKFTFLIYDLNNDGF 115 (149)
Q Consensus 97 ---~~~~~~~~~~~~d~~~~g~ 115 (149)
.++.+..+|.....++.-.
T Consensus 501 k~~leek~~ylF~~vA~~~sq~ 522 (966)
T KOG4286|consen 501 KAHLEDKYRYLFKQVASSTSQC 522 (966)
T ss_pred cchhHHHHHHHHHHHcCchhhH
Confidence 5778889999986555444
No 185
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=38.96 E-value=1.1e+02 Score=22.72 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHH--ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 29 EEILMERIFCAF--DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 29 ~~~~~~~~f~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
.++.++.++..+ |.|+.-.+--++|...+..+........+..+-..+-..=+|.|-+.|+..-++.- +..+.++|.
T Consensus 33 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~-~P~lae~F~ 111 (337)
T TIGR02029 33 VENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNR-DPVVAELFQ 111 (337)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCC-ChHHHHHHH
Confidence 344466777666 34443445555666655544323333445555566666668888888888777663 345666777
Q ss_pred HhCCC
Q psy9937 107 IYDLN 111 (149)
Q Consensus 107 ~~d~~ 111 (149)
.+..|
T Consensus 112 ~MaRD 116 (337)
T TIGR02029 112 LMARD 116 (337)
T ss_pred HHhhh
Confidence 66555
No 186
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=38.39 E-value=90 Score=18.76 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHH
Q psy9937 48 IHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFT 104 (149)
Q Consensus 48 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~ 104 (149)
+.-.+|..++..+....+++.+..+-..+-..+...++..++..++... +.++++.+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV 81 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERV 81 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 7788888888888777788888777777766666555666666666665 34555544
No 187
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=37.83 E-value=1.3e+02 Score=22.64 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHH--ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 29 EEILMERIFCAF--DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 29 ~~~~~~~~f~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
..+.++.++..+ |.|+.=.+--++|...+..+........+..+-..+-..=+|.|-+.|+..-++.. ...+.++|.
T Consensus 43 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-nP~lae~F~ 121 (355)
T PRK13654 43 NREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR-NPLLAELFQ 121 (355)
T ss_pred hHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-CcHHHHHHH
Confidence 344466666665 34443445556666655554333334445555566666678888888888877754 345666666
Q ss_pred HhCCC
Q psy9937 107 IYDLN 111 (149)
Q Consensus 107 ~~d~~ 111 (149)
.+..|
T Consensus 122 lMaRD 126 (355)
T PRK13654 122 LMARD 126 (355)
T ss_pred HHhhh
Confidence 66554
No 188
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=37.24 E-value=58 Score=16.27 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=7.3
Q ss_pred CCcccHHHHHHHHH
Q psy9937 81 DGFITREEMFQLLR 94 (149)
Q Consensus 81 ~g~i~~~ef~~~l~ 94 (149)
..+++..||+..+.
T Consensus 22 ~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 22 KDTLSKKELKELLE 35 (44)
T ss_dssp TTSEEHHHHHHHHH
T ss_pred CCeEcHHHHHHHHH
Confidence 33555555555544
No 189
>KOG2871|consensus
Probab=36.02 E-value=24 Score=26.69 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHccCCCCcccHHHHHHHHHhhhccChH-HHHHHHHHHhhcCCCCcccHHHHHHHH
Q psy9937 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNE-ELIKFTFLIYDLNNDGFITREEMFQLL 93 (149)
Q Consensus 30 ~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~ef~~~l 93 (149)
++.+++.|+..|+.++|+|+-+-+..++..+....++ +.+-..=..+|+.+-|-|-..+|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 4558999999999999999999999988887633222 333333355677777766666554433
No 190
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=35.81 E-value=51 Score=15.15 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH
Q psy9937 100 LIKFTFLIYDLNNDGFITREEMFQLLR 126 (149)
Q Consensus 100 ~~~~~~~~~d~~~~g~i~~~ef~~~l~ 126 (149)
++..++..+- .-.||.+||+.++.
T Consensus 4 EW~~Li~eA~---~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 4 EWVELIKEAK---ESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHH---HTT--HHHHHHHHH
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHH
Confidence 3444444442 23466777776664
No 191
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=35.51 E-value=17 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=11.5
Q ss_pred CCCCcccHHHHHHHHHhC
Q psy9937 79 NNDGFITREEMFQLLRGT 96 (149)
Q Consensus 79 ~~~g~i~~~ef~~~l~~~ 96 (149)
+.++.|+++.+..-|...
T Consensus 37 ~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 37 NDDQSIDFERLAPYLGGI 54 (140)
T ss_pred cCCceecHHHHhhhcCCC
Confidence 455566776666666666
No 192
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=33.64 E-value=1.9e+02 Score=21.42 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHH--ccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHH
Q psy9937 29 EEILMERIFCAF--DRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFL 106 (149)
Q Consensus 29 ~~~~~~~~f~~~--d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 106 (149)
..+.++.+...+ |.|+.-.+--++|...+..+........+..+-..+-..=+|.|-+.|+..-++.. ...+.++|.
T Consensus 23 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-nP~lae~F~ 101 (323)
T cd01047 23 NREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT-NPVVAELFR 101 (323)
T ss_pred hHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC-CcHHHHHHH
Confidence 334456666665 44444445555666655544333334445555566666678888888888777664 345666666
Q ss_pred HhCCC
Q psy9937 107 IYDLN 111 (149)
Q Consensus 107 ~~d~~ 111 (149)
.+..|
T Consensus 102 lMaRD 106 (323)
T cd01047 102 LMARD 106 (323)
T ss_pred HHhhh
Confidence 66554
No 193
>smart00414 H2A Histone 2A.
Probab=33.63 E-value=75 Score=19.43 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCccc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFIT 117 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~ 117 (149)
+.++.+....-.++...|+...+..++.. ++++..+|+..-.-+.|.+.
T Consensus 46 EILeLagn~a~~~k~~rItp~hi~lAi~n--D~EL~~L~~~vti~~ggv~p 94 (106)
T smart00414 46 EVLELAGNAARDNKKRRITPRHLQLAIRN--DEELNKLLKGVTIAQGGVLP 94 (106)
T ss_pred HHHHHHHHHHHhcCCCccchHHHhhhccC--CHHHHHHHcCcccCCCccCC
Confidence 44554555444455567888877777766 77777777765444555443
No 194
>KOG0039|consensus
Probab=33.30 E-value=1.9e+02 Score=23.79 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHHHHHhhhc--------cChHHHHHHHHHHhhcCCCC
Q psy9937 11 LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR--------GTNEELIKFTFLIYDLNNDG 82 (149)
Q Consensus 11 i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~--------~~~~~~~~~~f~~~D~~~~g 82 (149)
++.+++. . .. .+.+.-++-+|..+|. .+|.++-+++..++..... ....+....++...|.++.|
T Consensus 4 ~~~~~~~--~---~~-~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK--I---TD-CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc--c---cC-CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 6777777 1 11 5556667888998887 7899998888877654432 22345556688888999999
Q ss_pred cccHHHHHHHHHhC
Q psy9937 83 FITREEMFQLLRGT 96 (149)
Q Consensus 83 ~i~~~ef~~~l~~~ 96 (149)
.+...++...+...
T Consensus 77 y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 77 YITNEDLEILLLQI 90 (646)
T ss_pred eeeecchhHHHHhc
Confidence 99999988888876
No 195
>KOG1954|consensus
Probab=33.21 E-value=66 Score=24.78 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=29.8
Q ss_pred HHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHH
Q psy9937 34 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92 (149)
Q Consensus 34 ~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~ 92 (149)
..+|....+- +|.|+=..-...+-.. ..++..+-.+|..-|.+.+|.++-+||.-+
T Consensus 447 de~fy~l~p~-~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSPV-NGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred Hhhhhccccc-CceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4455444432 4555544333322221 233345555777777777777777777544
No 196
>PHA02335 hypothetical protein
Probab=31.89 E-value=1.1e+02 Score=18.80 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=14.5
Q ss_pred ccccCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHcc
Q psy9937 5 FCAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDR 42 (149)
Q Consensus 5 ~~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~ 42 (149)
|..-+.+|+++|..=++.. ..+.++++++.+
T Consensus 19 Y~np~sVt~ddf~~DlkRi-------~yIkrllKRy~~ 49 (118)
T PHA02335 19 YNNPQSVTYDDFEEDLKRF-------KYIKRLFKRYLN 49 (118)
T ss_pred cCCcccccHHHHHHHHHHH-------HHHHHHHHhhcC
Confidence 3333445555555444431 234555555544
No 197
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=31.53 E-value=1.1e+02 Score=17.89 Aligned_cols=12 Identities=0% Similarity=-0.122 Sum_probs=5.9
Q ss_pred CCHHHHHHHhhh
Q psy9937 11 LGSLVCRELLHN 22 (149)
Q Consensus 11 i~~~e~~~~~~~ 22 (149)
||..||..+.+.
T Consensus 15 iT~~eLlkyskq 26 (85)
T PF11116_consen 15 ITAKELLKYSKQ 26 (85)
T ss_pred CCHHHHHHHHHH
Confidence 444555544444
No 198
>KOG4070|consensus
Probab=30.68 E-value=54 Score=21.55 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=36.4
Q ss_pred cccHHHHHHHHHhhh----ccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC---------hHHHHHHHHHHh
Q psy9937 47 VIHLDEWVLGLSCFL----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT---------NEELIKFTFLIY 108 (149)
Q Consensus 47 ~i~~~ef~~~~~~~~----~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~---------~~~~~~~~~~~~ 108 (149)
.++-..|-.++..-. ...+.......|..+--..-+.+++++|+.+|..+ .++.+.++.+.+
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred ccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 355555555554321 11222334456666656667789999999988887 255555555554
No 199
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=30.10 E-value=1.4e+02 Score=18.50 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=51.2
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCC
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNN 112 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~ 112 (149)
..-.|...-..+...++.+.=+.++..+........+..-++-+...+...|+.+.-..++.=. ..+..-+..+|.++
T Consensus 26 Y~f~F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~--~~~~~dls~Yde~~ 103 (117)
T PF03556_consen 26 YRFTFDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFF--KTVDEDLSNYDEEG 103 (117)
T ss_dssp HHHHHHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHH--HH-HCCHCC--TTS
T ss_pred HHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHH--HhcCccccCCCCCC
Confidence 4555555544556678888888888877653322333333333444566678888766665542 12245566676555
Q ss_pred CCcccHHHHHHHHH
Q psy9937 113 DGFITREEMFQLLR 126 (149)
Q Consensus 113 ~g~i~~~ef~~~l~ 126 (149)
-=-+-.+||+..++
T Consensus 104 AWP~liDeFVe~~r 117 (117)
T PF03556_consen 104 AWPSLIDEFVEWLR 117 (117)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhC
Confidence 44577888887763
No 200
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=29.83 E-value=2.1e+02 Score=20.55 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=46.5
Q ss_pred cccCCCCHHHHHHHhhhcC---CCccHHHH--HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHH---HHHHHHHHhh
Q psy9937 6 CAFDRLGSLVCRELLHNTF---DLVTEEIL--MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE---LIKFTFLIYD 77 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~~~~---~~~~~~~~--~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~---~~~~~f~~~D 77 (149)
..+|.++..|.. +++.++ + ++.++. ...+|+.- .....++.++...+.......... .+..+|.+--
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~-l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~ 141 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMN-LHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF 141 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcC-CCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 467889999887 444432 3 333322 34444433 334478889888887655333221 2344555543
Q ss_pred cCCCCcccHHHHHHHHHhC
Q psy9937 78 LNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 78 ~~~~g~i~~~ef~~~l~~~ 96 (149)
. ||.++..| ..+++..
T Consensus 142 A--DG~l~~~E-~~~L~~I 157 (267)
T PRK09430 142 A--DGSLHPNE-RQVLYVI 157 (267)
T ss_pred h--cCCCCHHH-HHHHHHH
Confidence 3 56788877 4454444
No 201
>KOG0506|consensus
Probab=28.78 E-value=3.1e+02 Score=21.99 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHccCCCCcccHHHHHHHHHhhhccChHHHHHHHHHH---hhc----C-CCCcccHHHHHHHHHhC
Q psy9937 35 RIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI---YDL----N-NDGFITREEMFQLLRGT 96 (149)
Q Consensus 35 ~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~---~D~----~-~~g~i~~~ef~~~l~~~ 96 (149)
-+|..+-....+.+++--|..+++..+...++..++.++.. +|. + .-+.++.+.|++.+...
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 45555554446889999999999988765555555545433 332 2 34578888888866553
No 202
>KOG3442|consensus
Probab=26.09 E-value=1.4e+02 Score=18.91 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.6
Q ss_pred HHHHHHHhhcCCCC
Q psy9937 69 IKFTFLIYDLNNDG 82 (149)
Q Consensus 69 ~~~~f~~~D~~~~g 82 (149)
++.+|++-|+...|
T Consensus 80 yehLFevNdkskGG 93 (132)
T KOG3442|consen 80 YEHLFEVNDKSKGG 93 (132)
T ss_pred HHHHHhccCcccCc
Confidence 34455555555434
No 203
>KOG0506|consensus
Probab=25.90 E-value=1.4e+02 Score=23.75 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHh---C----CC-CCCcccHHHHHHHHHh
Q psy9937 69 IKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIY---D----LN-NDGFITREEMFQLLRY 127 (149)
Q Consensus 69 ~~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~---d----~~-~~g~i~~~ef~~~l~~ 127 (149)
-..+|..|-...++++.+--|..+|+.. ++..+..+|..+ | .+ ..+.++.+.|.+++..
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 4558888877778999999999999998 344455554333 3 22 2357999999988753
No 204
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=25.75 E-value=2.3e+02 Score=19.64 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCCCCcc-cHHHHHHHHHhC
Q psy9937 66 EELIKFTFLIYDLNNDGFI-TREEMFQLLRGT 96 (149)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i-~~~ef~~~l~~~ 96 (149)
.+++..-|..+=-+.+..| +.+-+..++..+
T Consensus 83 ~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~F 114 (205)
T PF12238_consen 83 REKMTKYYKKHIYKEDSEVKDYNGLVKFCKDF 114 (205)
T ss_pred HHHHHHHHHHhccCcccccccHHHHHHHHHHH
Confidence 3455556665544555566 777777777766
No 205
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=25.70 E-value=91 Score=18.22 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=10.0
Q ss_pred CcccHHHHHHHHHhh
Q psy9937 46 GVIHLDEWVLGLSCF 60 (149)
Q Consensus 46 g~i~~~ef~~~~~~~ 60 (149)
+..++.+|...++..
T Consensus 24 ~~~tv~~~~~~lrk~ 38 (87)
T cd01612 24 ATQSFQAVIDFLRKR 38 (87)
T ss_pred CCCCHHHHHHHHHHH
Confidence 456777777777654
No 206
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=25.69 E-value=1.4e+02 Score=17.01 Aligned_cols=40 Identities=38% Similarity=0.404 Sum_probs=20.8
Q ss_pred HHHHHHHHHhC--hHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q psy9937 86 REEMFQLLRGT--NEELIKFTFLIYDLN-NDGFITREEMFQLL 125 (149)
Q Consensus 86 ~~ef~~~l~~~--~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 125 (149)
.+++...|... +.+.+.+++...+.+ --|.++.+|+.+++
T Consensus 44 i~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALIGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHTTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555555555 455555555555332 23456666665543
No 207
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.46 E-value=97 Score=16.81 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 70 KFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
..+|.+| .+++|.|...++...|..-
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~Lgvs 35 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKLGVS 35 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHHCCC
Confidence 3466666 5578899999988887764
No 208
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=25.36 E-value=42 Score=16.41 Aligned_cols=16 Identities=0% Similarity=0.040 Sum_probs=9.1
Q ss_pred cccCCCCHHHHHHHhh
Q psy9937 6 CAFDRLGSLVCRELLH 21 (149)
Q Consensus 6 ~~~~~i~~~e~~~~~~ 21 (149)
-..|..+.++++....
T Consensus 8 Y~~g~~t~~~v~~~V~ 23 (40)
T PF09693_consen 8 YDWGLYTKEDVKNFVE 23 (40)
T ss_pred HHcCCCCHHHHHHHhh
Confidence 3445566666666655
No 209
>PTZ00017 histone H2A; Provisional
Probab=25.20 E-value=1.2e+02 Score=19.47 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccH
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITR 118 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~ 118 (149)
+.++.+....-.++...|+...+..+++. +++++.+|...-.-+.|.+..
T Consensus 64 EILELAgNaa~d~kk~RItPrHi~lAI~n--DeEL~~Ll~~vtIa~GGV~P~ 113 (134)
T PTZ00017 64 EVLELAGNAAKDNKKKRITPRHIQLAIRN--DEELNKLLAGVTIASGGVLPN 113 (134)
T ss_pred HHHHHHHHHHHhcCCCeecHHHHHhhccC--cHHHHHHHcCCcccCCccCCC
Confidence 55666666665566678999888877777 788888887665566665543
No 210
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=25.16 E-value=1.8e+02 Score=18.06 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHhhh--ccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC-----hHHHHHHHHHHhCCCCCCcc
Q psy9937 44 CDGVIHLDEWVLGLSCFL--RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT-----NEELIKFTFLIYDLNNDGFI 116 (149)
Q Consensus 44 ~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~-----~~~~~~~~~~~~d~~~~g~i 116 (149)
.||.++.+|...+...+. ...+......+...++.-....++..++...+... ....+..++.....||.-.-
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~~ 115 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADGEISP 115 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC-SC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCH
Confidence 468888888766655441 11122333334444444333356777777777664 24455666777766654444
Q ss_pred cHHHHHHHHHh
Q psy9937 117 TREEMFQLLRY 127 (149)
Q Consensus 117 ~~~ef~~~l~~ 127 (149)
.-.+++.-+..
T Consensus 116 ~E~~~l~~ia~ 126 (140)
T PF05099_consen 116 EEQEFLRRIAE 126 (140)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 211
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=23.96 E-value=1.3e+02 Score=16.25 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=17.4
Q ss_pred CCcccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHH
Q psy9937 45 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92 (149)
Q Consensus 45 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~ 92 (149)
+|.+...++...+.. .+..||...-|+-++.+|...
T Consensus 21 ~g~v~ls~l~~~~~~------------~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKK------------KYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHHH------------HHTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHHH------------HCCCCCccccCCCcHHHHHHh
Confidence 345655555555543 224455555555555555543
No 212
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=23.19 E-value=1.7e+02 Score=19.73 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCCCcccHHHHHHHHHhhhccChHHHHHHHHH
Q psy9937 43 LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFL 74 (149)
Q Consensus 43 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~ 74 (149)
+.+|+++.++++..++......+.+.+..+..
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~ 60 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVE 60 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 66899999999988764333445555553433
No 213
>KOG1264|consensus
Probab=22.72 E-value=2.7e+02 Score=24.11 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=57.5
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHH-HHHHHHHHhhcCCCCcccHHHHHHHHHhC--hHHHHH-----H-
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE-LIKFTFLIYDLNNDGFITREEMFQLLRGT--NEELIK-----F- 103 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~f~~~D~~~~g~i~~~ef~~~l~~~--~~~~~~-----~- 103 (149)
+++.+-.+|......|+..+++..+.......+.. .++.-|.. |.-+++-+++++|..+...+ +..... .
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~ 224 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKD 224 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccch
Confidence 56666667766667799999999887765443322 22222222 34467789999999887776 111110 0
Q ss_pred -HHHHhCCCCCCcccHHHHHHHHHhcc
Q psy9937 104 -TFLIYDLNNDGFITREEMFQLLRYSR 129 (149)
Q Consensus 104 -~~~~~d~~~~g~i~~~ef~~~l~~~~ 129 (149)
+...-+...--.|++.||.++|...+
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~~~Q 251 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLIHEQ 251 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHHhhh
Confidence 01111112224799999999887543
No 214
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.50 E-value=1.4e+02 Score=16.08 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.2
Q ss_pred cccHHHHHHHHHhhhccChHHHHH
Q psy9937 47 VIHLDEWVLGLSCFLRGTNEELIK 70 (149)
Q Consensus 47 ~i~~~ef~~~~~~~~~~~~~~~~~ 70 (149)
.|+.++|...++......+.+.++
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~ 52 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLK 52 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHH
Confidence 367777777777766665555554
No 215
>PLN00153 histone H2A; Provisional
Probab=22.08 E-value=1.6e+02 Score=18.84 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccH
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITR 118 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~ 118 (149)
+.++.+-..--.++...|+...+..+++. +++++.+|.-.-.-..|.+..
T Consensus 61 EVLELAgnaa~d~kk~RItPrHi~lAI~n--DeEL~~Ll~~vTIa~GGV~P~ 110 (129)
T PLN00153 61 EVLELAGNAARDNKKNRIVPRHIQLAIRN--DEELGKLLGEVTIASGGVLPN 110 (129)
T ss_pred HHHHHHHHHHHhcCCCccChHHHHhhccC--cHHHHHHHCCCccCCCccCCC
Confidence 55666666665666778999888877777 888888888655566666544
No 216
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=21.68 E-value=1.8e+02 Score=16.97 Aligned_cols=13 Identities=0% Similarity=-0.314 Sum_probs=6.2
Q ss_pred cCCCCHHHHHHHh
Q psy9937 8 FDRLGSLVCRELL 20 (149)
Q Consensus 8 ~~~i~~~e~~~~~ 20 (149)
+|.++..|...+-
T Consensus 13 DG~v~~~E~~~i~ 25 (104)
T cd07313 13 DGEYDEEERAAID 25 (104)
T ss_pred cCCCCHHHHHHHH
Confidence 4455555444443
No 217
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=21.61 E-value=79 Score=19.11 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=20.1
Q ss_pred CCCcccHHHHHHHHHhChHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh
Q psy9937 80 NDGFITREEMFQLLRGTNEELIKFTFLIYDLNN-DGFITREEMFQLLRY 127 (149)
Q Consensus 80 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l~~ 127 (149)
.+|.++.++|...|..+++..-. .+.... .-..+.+.+.+.|..
T Consensus 3 ~d~~~~~~~F~~~W~sl~~~~~~----e~~~~~~~~~~~~~~i~~~L~~ 47 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLPDSNQQ----ELSIQLNASVPSPDAIEEKLQA 47 (114)
T ss_dssp TT----HHHHHHHHHHS-GGG------EEEEEETT----HHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHhCCcccce----EEEEeccccCCcHHHHHHHHHH
Confidence 36889999999999998322111 111111 245666777777764
No 218
>COG5562 Phage envelope protein [General function prediction only]
Probab=21.56 E-value=83 Score=20.19 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHhCCCCCCcccHHHHHHHHHh
Q psy9937 106 LIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 106 ~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
.....+..|..||+||...+..
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 3344567899999999988875
No 219
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.43 E-value=2.9e+02 Score=19.12 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHhhhcCCCccHHHHHHHHHHHHccCCCCcccHHHHHH-HHHhhhccChHHHHHHHHHHhhcCCCCcccH
Q psy9937 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL-GLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86 (149)
Q Consensus 8 ~~~i~~~e~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~ef~~-~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 86 (149)
+|.||..+....+...++ .... +.+ .+.-.++.+++.+... ++..+ ..+..+.++.+..-.-.+ -.+
T Consensus 11 DGTITl~Ds~~~itdtf~-~~e~---k~l---~~~vls~tiS~rd~~g~mf~~i-~~s~~Eile~llk~i~Id----p~f 78 (220)
T COG4359 11 DGTITLNDSNDYITDTFG-PGEW---KAL---KDGVLSKTISFRDGFGRMFGSI-HSSLEEILEFLLKDIKID----PGF 78 (220)
T ss_pred CCceEecchhHHHHhccC-chHH---HHH---HHHHhhCceeHHHHHHHHHHhc-CCCHHHHHHHHHhhcccC----ccH
Confidence 477888888888776555 2222 222 2333467788877444 44443 333344444333322222 256
Q ss_pred HHHHHHHHhC----------hHHHHHHHHHHh
Q psy9937 87 EEMFQLLRGT----------NEELIKFTFLIY 108 (149)
Q Consensus 87 ~ef~~~l~~~----------~~~~~~~~~~~~ 108 (149)
.||.+.+..- .+..+..+|..+
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI~~lfe~i 110 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI 110 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence 7777766665 244555555544
No 220
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=21.31 E-value=2.1e+02 Score=17.53 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=25.3
Q ss_pred HHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 53 WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 53 f~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
+.++|..+....+.++-+......+.-.+|.|+.......|+.+
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~ 98 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHL 98 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 44444444444444444546666666677777776666666554
No 221
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.05 E-value=1.7e+02 Score=16.40 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=6.9
Q ss_pred CCcccHHHHHHHHH
Q psy9937 45 DGVIHLDEWVLGLS 58 (149)
Q Consensus 45 ~g~i~~~ef~~~~~ 58 (149)
.|.+.-+||..++.
T Consensus 28 ~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 28 SGKLRGEEINSLLE 41 (75)
T ss_pred cCcccHHHHHHHHH
Confidence 35555555555443
No 222
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=20.73 E-value=2e+02 Score=19.50 Aligned_cols=33 Identities=21% Similarity=0.057 Sum_probs=16.4
Q ss_pred CCCCcccHHHHHHHHHhhhccChHHHHHHHHHH
Q psy9937 43 LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI 75 (149)
Q Consensus 43 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~ 75 (149)
+.+|+++.++++.....-....+.+.++.+...
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 567888888888777654333334555544433
No 223
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=20.69 E-value=2.6e+02 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=9.9
Q ss_pred CCCCcccHHHHHHHHHh
Q psy9937 43 LCDGVIHLDEWVLGLSC 59 (149)
Q Consensus 43 ~~~g~i~~~ef~~~~~~ 59 (149)
+.+|.|++..|..+++.
T Consensus 95 ~~n~~i~~~~ff~~lQ~ 111 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQP 111 (175)
T ss_pred CcccceeHHHHHHHHHH
Confidence 34556666666666653
No 224
>KOG2419|consensus
Probab=20.50 E-value=96 Score=25.64 Aligned_cols=64 Identities=25% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHHccCCCCcccHHHHHHHHHhhhccChHH---------HHHHHHHHhhcCCC----------------------
Q psy9937 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEE---------LIKFTFLIYDLNND---------------------- 81 (149)
Q Consensus 33 ~~~~f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~---------~~~~~f~~~D~~~~---------------------- 81 (149)
-.+++..+|-+.++.++|.+|..+........... ....+|...|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 45677777888888888888877765543211111 12337777888887
Q ss_pred -CcccHHHHHHHHHhC
Q psy9937 82 -GFITREEMFQLLRGT 96 (149)
Q Consensus 82 -g~i~~~ef~~~l~~~ 96 (149)
|.++.+|....++..
T Consensus 519 ~~~vtVDe~v~ll~~~ 534 (975)
T KOG2419|consen 519 FGVVTVDELVALLALD 534 (975)
T ss_pred cCeeEHHHHHHHHHHH
Confidence 888888887777743
No 225
>KOG3957|consensus
Probab=20.45 E-value=2.2e+02 Score=21.56 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=36.8
Q ss_pred HHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcccccccccccccCCcccCCCC
Q psy9937 86 REEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLNVGTLCVVQGP 149 (149)
Q Consensus 86 ~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
.-|+..+|.+. +..+|..+|.-.|.==.-.+++.|..+.=.......+....--...+.++-||
T Consensus 268 r~E~~kil~e~f~~kT~~eW~~iFeG~d~cV~PVl~~~EV~~~~hn~~rgsf~~~e~p~~~~i~~p~P 335 (387)
T KOG3957|consen 268 RVELRKILEEVFLEKTRAEWSQIFEGQDACVTPVLDIHEVFHHDHNKDRGSFTKTEHPTSDWIPVPGP 335 (387)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCHHHhccccchhhccceeeeccCCCccccCCCC
Confidence 55667776666 56777777776665544567777665443332223444433333556666665
No 226
>PLN00156 histone H2AX; Provisional
Probab=20.26 E-value=1.8e+02 Score=18.76 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCcccH
Q psy9937 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITR 118 (149)
Q Consensus 66 ~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~~ 118 (149)
.+.++.+-...-.++...|+...+..+++. +++++.+|.-.-.-..|.+..
T Consensus 65 aEVLELAgNaa~d~kk~RItPrHi~lAIrn--DeEL~~Ll~~vTIa~GGV~P~ 115 (139)
T PLN00156 65 AEVLELAGNAARDNKKNRIVPRHIQLAVRN--DEELSKLLGSVTIAAGGVLPN 115 (139)
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHhhccC--cHHHHHHHCCCccCCCccCCC
Confidence 356666666665666678999888877777 888998888665666666543
No 227
>KOG2301|consensus
Probab=20.08 E-value=58 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhCh-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTN-------EELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
+....+|..||++..|.|...+....++.+. ....+.+=..+-...+|+|++.+-..++..
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 4456688889999999999988888888881 000011111222335566666666655543
No 228
>PLN00157 histone H2A; Provisional
Probab=20.08 E-value=1.6e+02 Score=18.86 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCCCcccHHHHHHHHHhChHHHHHHHHHHhCCCCCCccc
Q psy9937 67 ELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFIT 117 (149)
Q Consensus 67 ~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~d~~~~g~i~ 117 (149)
+.++.+-...-.++...|+...+..+++. +++++.+|.-.-.-..|.+.
T Consensus 63 EVLELAgnaa~d~kk~RItPrHi~lAI~n--DeEL~~Ll~~vtIa~GGV~P 111 (132)
T PLN00157 63 EVLELAGNAARDNKKSRIVPRHIQLAVRN--DEELSKLLGGVTIAAGGVLP 111 (132)
T ss_pred HHHHHHHHHHHhcCCccccHHHHhhcccC--cHHHHHHHcCceecCCccCC
Confidence 56666666665666778999887777776 88888888765555666554
No 229
>KOG4301|consensus
Probab=20.05 E-value=2.1e+02 Score=21.72 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhC----hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q psy9937 70 KFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREEMFQLLRY 127 (149)
Q Consensus 70 ~~~f~~~D~~~~g~i~~~ef~~~l~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 127 (149)
......+|+.+.|+++.--...++..+ -.+.+..+|.... |..|.+.+-.|.+++..
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHE 173 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH
Confidence 334566899999999988777777777 2677888888885 55776666665555554
No 230
>KOG2557|consensus
Probab=20.00 E-value=4.2e+02 Score=20.44 Aligned_cols=50 Identities=20% Similarity=0.486 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHhhhccChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhC
Q psy9937 47 VIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96 (149)
Q Consensus 47 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ef~~~l~~~ 96 (149)
.++++.+.-.......+..++..+.+....|.+++|.....+..+.+...
T Consensus 74 ~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred cchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 46777777666666667778888989999999999999999988887766
Done!