RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9937
(149 letters)
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 96.4 bits (240), Expect = 5e-26
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
++ + +E++F FD DG I E+V LS L+G ++ +++ F +Y
Sbjct: 38 KQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLY 97
Query: 77 DLNNDGFITREEMFQLLR-----------GTNEELIKFTFLIYDLNNDGFITREE 120
D++ +G I R E+ +++ T EE F D+N DG ++ EE
Sbjct: 98 DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
Score = 72.5 bits (178), Expect = 8e-17
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGL-SCFLRGTNEELIKFTFLIYDLNNDGFITR 86
E + + F C G + L E+ L + + ++ F +D N DG+I
Sbjct: 14 TEC--HQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF 71
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E + +L+G ++ +++ F +YD++ +G I R E+ +++
Sbjct: 72 MEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIK 115
Score = 35.5 bits (82), Expect = 0.003
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
+ E ++ G +T E Q + + ++ F +D N DG+I
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDF 71
Query: 119 EE 120
E
Sbjct: 72 ME 73
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 96.4 bits (240), Expect = 7e-26
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+ LL +++++ FD DG + E++ ++ ++ E+ +K+ F +Y
Sbjct: 43 KTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLY 102
Query: 77 DLNNDGFITREEMFQLLRG----------TNEELIKFTFLIYDLNNDGFITREE 120
D + +G I + E+ + + EE I F D+NNDG +T EE
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEE 156
Score = 75.2 bits (185), Expect = 9e-18
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLS-CFLRGTNEELIKFTFLIYDLNNDGFITR 86
+E + F G+ L E+ L L + I + +D N DGF+
Sbjct: 19 QET--HVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDF 76
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E + +++ E+ +K+ F +YD + +G I + E+ +
Sbjct: 77 LEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFM 120
Score = 27.5 bits (61), Expect = 1.4
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDG 82
++ E + +F D DG + L+E++ G++ +++L++ + +D +N
Sbjct: 129 QTLSPEEFINLVFHKIDINNDGELTLEEFINGMA-----KDQDLLEIVYKSFDFSNVL 181
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 95.0 bits (236), Expect = 4e-25
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+++ F +F AFD G + +++V LS LRGT E +++TF +Y
Sbjct: 75 KQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 134
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
D+N DG+I +EEM +++ T + + F D N DG +T +E
Sbjct: 135 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 194
Query: 121 MFQLLR 126
+ +
Sbjct: 195 FLESCQ 200
Score = 28.8 bits (64), Expect = 0.57
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
T EL + G + E Q+ G + F +D G +
Sbjct: 49 TKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 108
Query: 119 EEM 121
E+
Sbjct: 109 EDF 111
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 94.9 bits (236), Expect = 4e-25
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+E+ F +F AFD +G + ++++ GLS LRGT +E + + F +Y
Sbjct: 88 KEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLY 147
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
D+N DG+IT+EEM +++ + ++ F D N DG +T +E
Sbjct: 148 DINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDE 207
Query: 121 MFQLLR 126
+ +
Sbjct: 208 FIESCQ 213
Score = 30.6 bits (69), Expect = 0.13
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
T +EL + G + E ++ G + F F +D +++G ++
Sbjct: 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSF 121
Query: 119 EEM 121
E+
Sbjct: 122 EDF 124
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 91.8 bits (228), Expect = 3e-24
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+++ N F E +F FD DG I E+++ LS RG E+ +K+ F +Y
Sbjct: 49 KKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMY 108
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
DL+ +G+I++ EM ++++ T E+ + F D N DG ++ EE
Sbjct: 109 DLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEE 168
Score = 66.8 bits (163), Expect = 1e-14
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
EI + + F R C G + ++E+ F G + + F +D N DG I
Sbjct: 25 HEI--QEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDF 82
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
E + RG E+ +K+ F +YDL+ +G+I++ EM ++++ + + +
Sbjct: 83 REFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMP 139
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 92.8 bits (230), Expect = 4e-24
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+ + F +F AFD +G IH +++V+GLS LRGT E +K+ F +Y
Sbjct: 115 KLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLY 174
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
D+N DG IT+EEM +++ E ++ F D N DG +T +E
Sbjct: 175 DINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDE 234
Score = 63.1 bits (153), Expect = 5e-13
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
+E+ + ++ F C G++ D + L S F +G F F +D + +G I
Sbjct: 91 KEL--QSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHF 148
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E+ + LLRGT E +K+ F +YD+N DG IT+EEM +++
Sbjct: 149 EDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMK 192
Score = 30.0 bits (67), Expect = 0.25
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
T +EL + G + + + G F F +D + +G I
Sbjct: 89 TKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHF 148
Query: 119 EEM 121
E+
Sbjct: 149 EDF 151
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 91.0 bits (226), Expect = 4e-24
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+++ F +F AFD G + +++V LS LRGT E +++TF +Y
Sbjct: 42 KQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
D+N DG+I +EEM +++ T + + F D N DG +T +E
Sbjct: 102 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 161
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 91.1 bits (226), Expect = 6e-24
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+++ F +F FD DG I E++ LS RGT +E +++ F +Y
Sbjct: 49 QKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLY 108
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
DL+NDG+ITR EM ++ T E+ + F + D N DG +T +E
Sbjct: 109 DLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQE 168
Score = 61.4 bits (149), Expect = 9e-13
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
+E+ ++ + F + C G + + F G + F F ++D N DG I
Sbjct: 25 KEV--QQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEF 82
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
E + RGT +E +++ F +YDL+NDG+ITR EM ++ N ++L
Sbjct: 83 SEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELP 139
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 90.6 bits (225), Expect = 6e-24
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+++ F E +F FD +G I E++ LS RG + + + F +Y
Sbjct: 49 QKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLY 108
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
DL+N+G I+ +EM +++ T E+ + F + D N DG +T EE
Sbjct: 109 DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEE 168
Score = 64.8 bits (158), Expect = 6e-14
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
+E+ ++ + F + C G ++ E+ F G ++ F ++D + +G+I
Sbjct: 25 KEL--QQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF 82
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
+E + RG + + + F +YDL+N+G I+ +EM +++ + + L
Sbjct: 83 KEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLP 139
Score = 31.7 bits (72), Expect = 0.059
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
+EL ++ + G + + E ++ + G ++ F ++D + +G+I
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF 82
Query: 119 EEM 121
+E
Sbjct: 83 KEF 85
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 88.9 bits (220), Expect = 5e-23
Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+ + F + + +F +FD DG + E+V+ L G + +++ F +Y
Sbjct: 57 QSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLY 116
Query: 77 DLNNDGFITREEMFQLLRG------------------TNEELIKFTFLIYDLNNDGFITR 118
D++ +G I++ E+ +++ T E+ + + + N+D +T
Sbjct: 117 DVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTE 176
Query: 119 EE 120
+E
Sbjct: 177 KE 178
Score = 60.4 bits (146), Expect = 4e-12
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFL 74
EL NT EE+ + +F + C G I ++ + F + + F
Sbjct: 22 EELQLNTK-FSEEEL--CSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFR 78
Query: 75 IYDLNNDGFITREEMFQLL----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+D N DG + +E L G + +++ F +YD++ +G I++ E+ +++
Sbjct: 79 SFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVM 134
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 88.0 bits (218), Expect = 8e-23
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
++ F + E +F FD+ +G IH +E++ LS RGT EE + + F +Y
Sbjct: 49 VKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELY 108
Query: 77 DLNNDGFITREEMFQLLRG----------------TNEELIKFTFLIYDLNNDGFITREE 120
DLN+DG+IT +EM ++ T E +K F + D N DG+IT +E
Sbjct: 109 DLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDE 168
Score = 63.7 bits (155), Expect = 1e-13
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 29 EEILMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
EI ++ F R C G + +++V F G+ E+ F ++D +N+GFI
Sbjct: 25 REI--QQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHF 82
Query: 87 EE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
EE + RGT EE + + F +YDLN+DG+IT +EM ++ + + LN
Sbjct: 83 EEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLN 139
Score = 30.2 bits (68), Expect = 0.19
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELIKFTFLIYDLNNDGFITR 118
E+ ++ G + RE+ ++ + G+ E+ F ++D +N+GFI
Sbjct: 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHF 82
Query: 119 EEMFQLL 125
EE +L
Sbjct: 83 EEFITVL 89
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 86.0 bits (213), Expect = 6e-22
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 24 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDG 82
+ + +RIF FD +GVI E+V L F E +KF F +YDL G
Sbjct: 67 RNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTG 126
Query: 83 FITREEMFQLLRG------------TNEELIKFTFLIYDLNNDGFITREE 120
FI REE+ +++ E ++ F+ D NDG I +E
Sbjct: 127 FIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
Score = 66.0 bits (161), Expect = 2e-14
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 29 EEILMERIFCAFDRLC-----DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF 83
EE+ E ++ F +L DG+IH +E+ L L R F ++D+ +G
Sbjct: 34 EEV--EALYELFKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRNGV 90
Query: 84 ITREEMFQLL-----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLD 137
I E + L E +KF F +YDL GFI REE+ +++ ++S L
Sbjct: 91 IEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLS 149
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 84.9 bits (210), Expect = 3e-21
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 28 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITR 86
E + +R+F FD +G++ +E+ LS F ++ I F+F +YDL GFI R
Sbjct: 82 KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIER 141
Query: 87 EEMFQLLRG------------TNEELIKFTFLIYDLNNDGFITREE 120
+E+ Q++ E++I TF D +DG I +EE
Sbjct: 142 QEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
Score = 62.5 bits (152), Expect = 6e-13
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLC-----DGVIHLDEWVLGLSCFL 61
+ + G L ELL EI E ++ F ++ DG+I+ +E+ L L
Sbjct: 23 LYKQSGGLGDPELLARDTVFSVSEI--EALYELFKKISSAVIDDGLINKEEFQLALF-KT 79
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLL-----RGTNEELIKFTFLIYDLNNDGFI 116
F ++D ++G + EE + L ++ I F+F +YDL GFI
Sbjct: 80 NKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFI 139
Query: 117 TREEMFQLLRYSRNQSYNRLD 137
R+E+ Q++ + +S L
Sbjct: 140 ERQEVKQMVVATLAESGMNLK 160
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 81.4 bits (201), Expect = 4e-20
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
+E +F AFD D I E+V L+ LRGT E +K+TF IYD + +G I R+E+
Sbjct: 58 TQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQEL 117
Query: 90 FQLLR---------------------GTNEELIKFTFLIYDLNNDGFITREE 120
++ T EE++ FL+ D N DG ++ E
Sbjct: 118 LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNE 169
Score = 69.1 bits (169), Expect = 2e-15
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 34 ERIFCAFDRLC-DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE---- 88
+ + F C G + + E+ + ++ F +D N D I E
Sbjct: 25 QEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAA 84
Query: 89 MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ +LRGT E +K+TF IYD + +G I R+E+ ++
Sbjct: 85 LNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVE 122
Score = 31.3 bits (71), Expect = 0.070
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLR----GTNEELIKFTFLIYDLNNDGFITRE 119
+L ++ + G + E + + + ++ F +D N D I
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFL 79
Query: 120 EMFQLL 125
E L
Sbjct: 80 EYVAAL 85
Score = 25.2 bits (55), Expect = 8.4
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWV 54
+ + L+T E +++RIF D DG + L+E+V
Sbjct: 125 YKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFV 171
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 74.8 bits (184), Expect = 7e-18
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 32 LMERIFCAFDRLC-DGVIHLDEWVLGLSCFL-RGTNEELIKFTFLIYDLNNDGFITREEM 89
ERI F + ++++ LS F T + + F I+D ++DG + RE++
Sbjct: 61 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 120
Query: 90 FQLLRG-------------TNEELIKFTFLIYDLNNDGFITREE 120
+L+ ++LI D++ DG I E
Sbjct: 121 SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 164
Score = 30.5 bits (69), Expect = 0.15
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 1 MERIFCAFD---RLGSLVCRE---LLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWV 54
ERI F SL + LL D T +I F FD DG ++ ++
Sbjct: 62 KERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLS 121
Query: 55 LGLSCFLRGTN---------EELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTF 105
++C ++LI D++ DG I E ++ + + F
Sbjct: 122 RLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKI 181
Query: 106 LI 107
++
Sbjct: 182 VL 183
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 74.5 bits (183), Expect = 2e-17
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 32 LMERIFCAFDRLC-DGVIHLDEWVLGLSCF-LRGTNEELIKFTFLIYDLNNDGFITREEM 89
ERI F + ++++ LS F T + + F I+D ++DG + RE++
Sbjct: 92 FKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDL 151
Query: 90 FQLLRG-------------TNEELIKFTFLIYDLNNDGFITREE 120
+L+ ++LI D++ DG I E
Sbjct: 152 SRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 195
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 67.5 bits (165), Expect = 6e-15
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 27/144 (18%)
Query: 3 RIFCAFDRLGS-LVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL 61
F + D+ + + RE +L L +RI AF + ++ ++ L+ F
Sbjct: 33 SRFTSLDKGENGTLSREDFQRIPELAINP-LGDRIINAFFSEGEDQVNFRGFMRTLAHFR 91
Query: 62 ----------------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR---GTN----- 97
+ + F F +YDL+ D I+R+E+ Q+LR G N
Sbjct: 92 PIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQ 151
Query: 98 -EELIKFTFLIYDLNNDGFITREE 120
+ T D + D I+ E
Sbjct: 152 LGSIADRTIQEADQDGDSAISFTE 175
Score = 28.2 bits (63), Expect = 0.81
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 37 FCAFDRLCDGVIHLDE--WVLGLSCFLRGTNEEL---IKFTFLIYDLNNDGFITREEMFQ 91
F +D D I DE VL + + ++E+L T D + D I+ E +
Sbjct: 119 FRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK 178
Query: 92 LLRGTN 97
+L +
Sbjct: 179 VLEKVD 184
Score = 25.9 bits (57), Expect = 4.9
Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 83 FITREEMFQLLRGTN---EELIKF--TFLIYDLNNDGFITREEMFQLLRYSRNQSYNRL 136
+ EE+ ++ + T ++ + F D +G ++RE+ ++ + N +R+
Sbjct: 8 LLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRI 66
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 62.6 bits (153), Expect = 2e-13
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 5 FCAFDRLGS-LVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG 63
F D S + E + +L L++R+ FD +G + E++ G+S F
Sbjct: 12 FKKLDLDNSGSLSVEEFMSLPELQQNP-LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVK 70
Query: 64 TN-EELIKFTFLIYDLNNDGFITREEMFQLLR---GTN------EELIKFTFLIYDLNND 113
+ E+ ++F F IYD++ DG+I+ E+FQ+L+ G N ++++ T + D + D
Sbjct: 71 GDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGD 130
Query: 114 GFITREE 120
G I+ EE
Sbjct: 131 GRISFEE 137
Score = 54.5 bits (132), Expect = 2e-10
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 29 EEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86
+EI L +R F D G + ++E++ + +I I+D + +G +
Sbjct: 3 DEIKRLGKR-FKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVID----IFDTDGNGEVDF 57
Query: 87 EEMFQLL-----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+E + + +G E+ ++F F IYD++ DG+I+ E+FQ+L+
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLK 102
Score = 28.0 bits (63), Expect = 0.92
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 2 ERIFCAFDRLGSLV------CRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 55
+R+ FD G+ + + E+ L F +D DG I E
Sbjct: 41 QRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRF-AFRIYDMDKDGYISNGELFQ 99
Query: 56 GLSCFLRGTN------EELIKFTFLIYDLNNDGFITREEMFQLLRGTN 97
L + G N ++++ T + D + DG I+ EE ++ G +
Sbjct: 100 VLKM-MVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGLD 146
Score = 25.7 bits (57), Expect = 5.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRL 136
+ F DL+N G ++ EE L +N R+
Sbjct: 8 LGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 43
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 62.1 bits (151), Expect = 7e-13
Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 28/145 (19%)
Query: 3 RIFCAFDRLGS-LVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL 61
F A DR + R L L L +RI +F + +V L+ F
Sbjct: 33 HRFRALDRNKKGYLSRMDLQQIGALAVNP-LGDRIIESFFPDGSQRVDFPGFVRVLAHFR 91
Query: 62 -----------------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR---GTN---- 97
+ + + F +YDL+ DG I+R EM Q+LR G
Sbjct: 92 PVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEE 151
Query: 98 --EELIKFTFLIYDLNNDGFITREE 120
E + T D + DG ++ E
Sbjct: 152 QLENIADRTVQEADEDGDGAVSFVE 176
Score = 27.0 bits (60), Expect = 2.2
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 83 FITREEMFQLLRGTN---EELIKF--TFLIYDLNNDGFITREEMFQLLRYSRNQSYNRL 136
+ + R T L++ F D N G+++R ++ Q+ + N +R+
Sbjct: 8 AAVIPDGDSIRRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRI 66
Score = 25.9 bits (57), Expect = 5.7
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 37 FCAFDRLCDGVIHLDE--WVLGLSCFLRGTNEEL---IKFTFLIYDLNNDGFITREEMFQ 91
F +D DG I E VL L ++ T E+L T D + DG ++ E +
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK 179
Query: 92 LLRGTNEE 99
L + E
Sbjct: 180 SLEKMDVE 187
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 60.1 bits (146), Expect = 2e-12
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 22/148 (14%)
Query: 1 MERIFCAFDR----------LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLC-----D 45
M+ F D S+ R + ++LM+ + +D
Sbjct: 8 MKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGG 67
Query: 46 GVIHLDEWVLGLSCFLRGTNEE-----LIKFTFLIYDLNNDGFITREEMFQLLR--GTNE 98
I ++ + ++ + + F D N D I+R+E G ++
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDK 127
Query: 99 ELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ +F D NNDG ++ EE
Sbjct: 128 TMAPASFDAIDTNNDGLLSLEEFVIAGS 155
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 56.3 bits (136), Expect = 7e-11
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 45 DGVIHLDEWVLGLSCFLRGTNEE--------LIKFTFLIYDLNNDGFITREEMFQLLR-- 94
DG + ++++ + E ++K + D N DG I +E L
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTAL 131
Query: 95 GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
G ++ F D N +G ++ +E+ +R
Sbjct: 132 GMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
Score = 25.1 bits (55), Expect = 9.9
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 1 MERIFCAFDRLGS-LVCRELLHN---TFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLG 56
++ I D+ + + + E F D +G + LDE +
Sbjct: 104 VKGIVGMCDKNADGQINADEFAAWLTALGMSKAEA--AEAFNQVDTNGNGELSLDELLTA 161
Query: 57 LSCFLRGTNE 66
+ F G +
Sbjct: 162 VRDFHFGRLD 171
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 56.8 bits (137), Expect = 8e-11
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 26/152 (17%)
Query: 1 MERIFCAFDRLGS---------LVCRELLHNTFDLVTEEILM----ERIFCAFDRLCDGV 47
+ + F FD + + M F
Sbjct: 38 LYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNG 97
Query: 48 IHLDEWVLGLSCFLRGTNE-----------ELIKFTFLIYDLNNDGFITREEMFQLLR-- 94
+ ++WV F E L + + D + DG + +E+ +++
Sbjct: 98 LLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAF 157
Query: 95 GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+E F D + G + R E+ L R
Sbjct: 158 DVPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 88
+L + D DG + +DE + F +E F D + G + R E
Sbjct: 126 IALLSNSYYDVLDDDGDGTVDVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTE 183
Query: 89 MFQLLRG 95
+ L R
Sbjct: 184 LVHLFRK 190
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 56.4 bits (136), Expect = 9e-11
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 1 MERIFCAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 60
+++I T L+ + + D D + +EW+ +
Sbjct: 39 IKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY-----ADENEDEQVTKEEWLKMWAEC 93
Query: 61 LRGTNEE---------LIKFTFLIYDLNNDGFITREEMFQLLR--GTNEELIKFTFLIYD 109
++ + + F F + D + D I + E + G + F
Sbjct: 94 VKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLS 153
Query: 110 LNNDGFITREEMFQLLR 126
+TRE +L
Sbjct: 154 DGGKTMVTREIFARLWT 170
Score = 32.5 bits (74), Expect = 0.026
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 20/78 (25%)
Query: 69 IKFTF-LIYDLNNDGFITREEM-------------------FQLLRGTNEELIKFTFLIY 108
I F YD N+DG I ++ R T + +
Sbjct: 14 ILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYA 73
Query: 109 DLNNDGFITREEMFQLLR 126
D N D +T+EE ++
Sbjct: 74 DENEDEQVTKEEWLKMWA 91
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 57.0 bits (138), Expect = 1e-10
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 24 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGF 83
FDL E ++ I A D +G I E+V +++ ++ F +D + +G
Sbjct: 383 FDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGK 442
Query: 84 ITREEMFQLL--RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
I+ +E+ + + K D NNDG + EE ++++
Sbjct: 443 ISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 487
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 29 EEIL-MERIFCAFDRLCDGVIHLDEWVLGL--------SCFLRGTNEELIKFTFLIYDLN 79
EE + IF D+ DG + E + G + F E + D +
Sbjct: 343 EETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD 402
Query: 80 NDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 125
+G+I E +++ ++ F +D + +G I+ +E+ +
Sbjct: 403 RNGYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVF 452
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
+ +E F FD+ +G I +DE L L + K D NNDG + EE
Sbjct: 425 KDKLESAFQKFDQDGNGKISVDE--LASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEF 482
Query: 90 FQLLRGTNE 98
++++
Sbjct: 483 CKMIQKLCS 491
Score = 35.1 bits (81), Expect = 0.005
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR------------GTNEELIKFTFLIYD 109
+ EE + F D N DG + R+E+ E + D
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAAD 400
Query: 110 LNNDGFITREE 120
+ +G+I E
Sbjct: 401 FDRNGYIDYSE 411
Score = 32.0 bits (73), Expect = 0.055
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLNV 140
+ EE + F D N DG + R+E+ + DL
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQ 387
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 56.6 bits (137), Expect = 2e-10
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 22 NTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNND 81
+ D E ++++ A D +G I E+V + E ++ F ++D +N
Sbjct: 373 SMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNS 432
Query: 82 GFITREEMFQLLR--GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
G I+ E+ + + E K D NNDG + +E Q+L
Sbjct: 433 GKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479
Score = 43.1 bits (102), Expect = 8e-06
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)
Query: 29 EEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-----------EELIKFTFLIY 76
+E + IF D+ DG + E + G +R E +
Sbjct: 332 DETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV 391
Query: 77 DLNNDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128
D + +G+I E + E ++ F ++D +N G I+ E+ + S
Sbjct: 392 DFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVS 447
Score = 34.7 bits (80), Expect = 0.007
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
+ER F FD G I E L + + E K D NNDG + +E
Sbjct: 417 RERLERAFRMFDSDNSGKISSTE--LATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEF 474
Query: 90 FQLLRGTN 97
Q+L
Sbjct: 475 QQMLLKLC 482
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 56.6 bits (137), Expect = 2e-10
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 10 RLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELI 69
G V R + +L E ++ I D +G I E++ +EE +
Sbjct: 378 IEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDKQILFSEERL 437
Query: 70 KFTFLIYDLNNDGFITREEMFQLL--RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ F ++D + G IT+EE+ L +E+ D N D I +E ++
Sbjct: 438 RRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMH 496
Score = 44.3 bits (105), Expect = 3e-06
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 29 EEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--------EELIKFTFLIYDLN 79
EE + IF D+ DG + E + G + N EE + D +
Sbjct: 352 EERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD 411
Query: 80 NDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128
+G+I E +EE ++ F ++D + G IT+EE+ L +
Sbjct: 412 KNGYIEYSEFISVCMDKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLT 464
Score = 34.7 bits (80), Expect = 0.007
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
E + R F FD G I +E L L +E+ D N D I +E
Sbjct: 434 EERLRRAFNLFDTDKSGKITKEE--LANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEF 491
Query: 90 FQLLRG 95
++
Sbjct: 492 VSMMHK 497
Score = 32.8 bits (75), Expect = 0.036
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLNV 140
T EE + F D N DG + ++E+ + RN +L
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKN 396
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 54.7 bits (132), Expect = 3e-10
Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 24/150 (16%)
Query: 1 MERIFCAFDR-------------LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGV 47
M+ D + + + + R+
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVR 75
Query: 48 IHLDEWVLGLSCFLRGTNEE-------LIKFTFLIYDLNNDGFITREEMFQLLRGTNEEL 100
I ++E + + L E + D + DG+++ E L+ +L
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDL 135
Query: 101 ----IKFTFLIYDLNNDGFITREEMFQLLR 126
F D N +G I+R+E +
Sbjct: 136 TDDKAITCFNTLDFNKNGQISRDEFLVTVN 165
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 54.9 bits (132), Expect = 5e-10
Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 29/159 (18%)
Query: 1 MERIFCAFDRLGS---------LVCRELLHNTFDLVTEEILME---RIFCAFDRLCDGVI 48
+ + +D S ++LL V + L E + FD DG +
Sbjct: 105 FMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKL 164
Query: 49 HLDEWV--------LGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG----- 95
L E L + F +YD + +G+I E+ LL+
Sbjct: 165 ELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKN 224
Query: 96 ----TNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRN 130
+ + I L++ G + R ++ +L N
Sbjct: 225 KQELDINNISTYKKNIMALSDGGKLYRTDLALILSAGDN 263
Score = 44.5 bits (105), Expect = 3e-06
Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 31/154 (20%)
Query: 3 RIFCAFDRLGS---------LVCRELLHN-TFDLVTEEILMERIFCAFDRLCDGVIHLDE 52
I+ FD GS + +ELL + M+ + + DG I + E
Sbjct: 20 EIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVE 79
Query: 53 WVLGLSCFLRGT---------NEELIKFTFLIYDLNNDGFITREEMFQLLR--------- 94
L + E T+ YD ++ GFI EE+ L+
Sbjct: 80 LAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKT 139
Query: 95 ---GTNEELIKFTFLIYDLNNDGFITREEMFQLL 125
E ++D NNDG + EM +LL
Sbjct: 140 VDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLL 173
Score = 42.6 bits (100), Expect = 1e-05
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 35 RIFCAFDRLCDGVIHLDEWVLGLSCFLR-----------GTNEELIKFTFLIYDLNNDGF 83
I+ FD G + E L ++ + E+ F Y +DG
Sbjct: 20 EIWLHFDADGSGYLEGKE----LQNLIQELLQARKKAGLELSPEMKTF-VDQYGQRDDGK 74
Query: 84 ITREEMFQLL-------------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
I E+ +L + + E T+ YD ++ GFI EE+ L+
Sbjct: 75 IGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLK 130
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 52.7 bits (126), Expect = 8e-10
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 16/79 (20%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRGTN----------------EELIKFTFLI 107
+ +EL F ++D + + + E+ + + +I
Sbjct: 65 SPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRD 124
Query: 108 YDLNNDGFITREEMFQLLR 126
D NNDG+I E + L+
Sbjct: 125 DDKNNDGYIDYAEFAKSLQ 143
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 54.3 bits (131), Expect = 1e-09
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
E ++ + D G I E++ + E ++ F ++D + G I+ +E+
Sbjct: 380 EDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKEL 439
Query: 90 FQLL----RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR-YSRNQ 131
F+L E ++ D N DG + E ++L+ + RN+
Sbjct: 440 FKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFVRNE 486
Score = 40.8 bits (96), Expect = 5e-05
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 28 TEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN--------------EELIKFT 72
+E + IF D DG++ DE V G F+R E+ I
Sbjct: 327 LDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSL 386
Query: 73 FLIYDLNNDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ D++ G I E + E ++ F ++D + G I+ +E+F+L
Sbjct: 387 MPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFS 444
Score = 33.5 bits (77), Expect = 0.016
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEM 121
T +E + F D NNDG + R+E+ + +K + N+G +++
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYH--EFMRLKGVDSNSLIQNEGSTIEDQI 383
Query: 122 FQLLRYSRNQSYNRLD 137
L+ ++
Sbjct: 384 DSLMPLLDMDGSGSIE 399
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 52.8 bits (127), Expect = 1e-09
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 45 DGVIHLDEWVLGLSCFLRGTNEE-------LIKFTFLIYDLNNDGFITREEMFQLLR--G 95
D I +E+V G LR + + + D + DG +T + + L G
Sbjct: 69 DQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFG 128
Query: 96 TNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E+L + D + DG + E+
Sbjct: 129 VPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 47.0 bits (112), Expect = 2e-07
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 26/120 (21%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLS--CFLRGTNEELIKFTFLIY-------------D 77
+ F FD+ +G I ++ G + L D
Sbjct: 6 IAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIAD 65
Query: 78 LNNDGFITREE----MFQLLRGTNEE-------LIKFTFLIYDLNNDGFITREEMFQLLR 126
+ D ITREE + LR + + + D + DG +T + + L
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Score = 38.2 bits (89), Expect = 2e-04
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
+ D DG + + + L+ F G E+L + D + DG + E+
Sbjct: 97 RPFLHAALGVADTDGDGAVTVADTARALTAF--GVPEDLARQAAAALDTDGDGKVGETEI 154
Query: 90 FQLLR 94
Sbjct: 155 VPAFA 159
Score = 34.7 bits (80), Expect = 0.004
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 19/74 (25%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLR------GTNEELIKFTFLIY----------- 108
E I F +D + +G I R + + G + L
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 109 --DLNNDGFITREE 120
D + D ITREE
Sbjct: 63 IADRDGDQRITREE 76
Score = 31.6 bits (72), Expect = 0.052
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 98 EELIKFTFLIYDLNNDGFITREEMFQLLR 126
E I F +D + +G I R + +
Sbjct: 3 ERRIAARFTTFDQDGNGHIDRSDFSGAAK 31
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 53.7 bits (129), Expect = 2e-09
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 8 FDRLGSLVCRELLHNTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-- 63
F G+++ +L +NT D +TEE + E F FD+ DG I E L +R
Sbjct: 287 FKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKE----LGTVMRSLG 342
Query: 64 ---TNEELIKFTFLI--YDLNNDGFITREEMFQLL------RGTNEELIKFTFLIYDLNN 112
T EL +I D + +G I E ++ + EE+ + F ++D +
Sbjct: 343 QNPTEAELQD---MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE-AFRVFDKDG 398
Query: 113 DGFITREEMFQLLR 126
+G+I+ E+ ++
Sbjct: 399 NGYISAAELRHVMT 412
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 13/134 (9%)
Query: 6 CAFDRLGSLVCRELLHNTFDLVTEEI--LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG 63
R + L + + + + D D V+ +E++ +
Sbjct: 33 DMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIAT 92
Query: 64 TN---------EELIKFTFLIYDLNNDGFITREEMFQLLR--GTNEELIKFTFLIYDLNN 112
+ I F F D++ DG + EE + + + +
Sbjct: 93 CKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGG 152
Query: 113 DGFITREEMFQLLR 126
+L
Sbjct: 153 KVTFDLNRYKELYY 166
Score = 41.8 bits (98), Expect = 2e-05
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 32/129 (24%)
Query: 30 EILMERIFCAFDRLCD----GVIHLDEWVLGLSCF---------------LRGTNEELIK 70
+ ++I FD D G I +++ ++ + ++ + E+ +
Sbjct: 4 DFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWR 63
Query: 71 FTFLIYDLNNDGFITREEMFQLLRGTN-------------EELIKFTFLIYDLNNDGFIT 117
D+N D ++ EE + T + I F F D++ DG +
Sbjct: 64 DLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVD 123
Query: 118 REEMFQLLR 126
EE +
Sbjct: 124 LEEFQNYCK 132
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 51.1 bits (123), Expect = 5e-09
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 22 NTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNN 80
+ ++ I + +F D +G + E L+ G + I D+N+
Sbjct: 29 HELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASV--GIKKWDINRILQALDIND 86
Query: 81 DGFITREE---MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
G IT E + +K F D + DG+I++ ++ L+
Sbjct: 87 RGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVH 135
Score = 48.4 bits (116), Expect = 5e-08
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 5/127 (3%)
Query: 1 MERIFCAFDR--LGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 58
+ +F D GSL RE+ + ++ + RI A D G I E+ +
Sbjct: 41 INELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEF-MAGC 99
Query: 59 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTN--EELIKFTFLIYDLNNDGFI 116
+ +K F D + DG+I++ ++ L+ I FL G
Sbjct: 100 YRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIP 159
Query: 117 TREEMFQ 123
+ +
Sbjct: 160 REHIINK 166
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 51.2 bits (123), Expect = 7e-09
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 29 EEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITRE 87
I + R F DR + DE+ GL+ ++ + +D N G + E
Sbjct: 34 SGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Query: 88 E----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYN 134
E + + E +I F D + DG +T +++ + +
Sbjct: 94 EFLRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVR 144
Score = 46.6 bits (111), Expect = 4e-07
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 20/136 (14%)
Query: 3 RIFCAFDRLGS--LVCREL---LHNT-FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLG 56
R F DR GS L E L L E E + +DR G + L+E++
Sbjct: 41 RFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEA--EGVCRKWDRNGSGTLDLEEFLRA 98
Query: 57 LSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG------------TNEELIKFT 104
L + E +I F D + DG +T +++ + G +E L +F
Sbjct: 99 LRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFL 158
Query: 105 FLIYDLNNDGFITREE 120
DG +T E
Sbjct: 159 DNFDSSEKDGQVTLAE 174
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 49.1 bits (118), Expect = 2e-08
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 2 ERIFCAFDR--LGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLG 56
E +F D G++ E+ + + E++L + IF + D +G I +E+
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL-QLIFKSIDADGNGEIDQNEFAKF 61
Query: 57 LSCFLRGT---NEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNND 113
++ +K + + D++ DG +T+EE+ + E + + D N D
Sbjct: 62 YGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGD 121
Query: 114 GFITREE 120
G+IT EE
Sbjct: 122 GYITLEE 128
Score = 47.5 bits (114), Expect = 6e-08
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 91
+ E +F D DG + +E +S NE+L++ F D + +G I + E +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 92 LLRGTN-------EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ +K + + D++ DG +T+EE+ +
Sbjct: 61 FYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFK 102
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 49.2 bits (118), Expect = 4e-08
Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 26 LVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-----------NEELIKFT 72
L T E E +IF D DG + E + G ++ E +
Sbjct: 33 LTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHI 92
Query: 73 FLIYDLNNDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
D + +G+I E + E + F +D + G IT EE+ +L
Sbjct: 93 LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFG 150
Score = 48.8 bits (117), Expect = 4e-08
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86
E + + I + D +G I E+V + E + F +D + G IT
Sbjct: 84 QIEAEV-DHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITN 142
Query: 87 EEMFQLLRGTN--EELIKFTFLIYDLNNDGFITREEMFQLLR 126
EE+ +L T +E D NNDG + EE ++++
Sbjct: 143 EELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQ 184
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 48.8 bits (117), Expect = 4e-08
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 3 RIFCAFDR--LGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGL 57
F D G + +L L + + + D G I E+ +
Sbjct: 56 STFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNF--DLLLDQIDSDGSGKIDYTEF-IAA 112
Query: 58 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTF-------LIY-- 108
+ + +++LI F ++D++NDG IT E+ +L N++ +I
Sbjct: 113 ALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDV 172
Query: 109 DLNNDGFITREEMFQLLR 126
D NNDG I E ++++
Sbjct: 173 DKNNDGKIDFHEFSEMMK 190
Score = 41.5 bits (98), Expect = 2e-05
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 40/103 (38%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR----------------------GT--- 96
+ ++ +K TFL+ D + G+IT+E++ + L G
Sbjct: 47 NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDY 106
Query: 97 -------------NEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+++LI F ++D++NDG IT E+ +L
Sbjct: 107 TEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILY 149
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 48.7 bits (117), Expect = 5e-08
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 26 LVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGL-SCFLRGTNEELIKFTFLI--YDLNND 81
L EI + IF A D G + E + GL + ++ + ++ D N
Sbjct: 51 LCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQ---VLRDIDSNAS 107
Query: 82 GFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
G I + +E+ F +D++ +G I+ EE+ ++
Sbjct: 108 GQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFG 156
Score = 46.4 bits (111), Expect = 3e-07
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 4 IFCAFDRLGS--LVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 58
IF A D S L +E+ L + ++ D G IH +++
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDI-HQVLRDIDSNASGQIHYTDFLAATI 120
Query: 59 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTN------EELIKFTFLIYDLNN 112
+E+ F +D++ +G I+ EE+ ++ + ++ I DLN
Sbjct: 121 DKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNG 180
Query: 113 DGFITREEMFQLLR 126
DG I E ++
Sbjct: 181 DGEIDFHEFMLMMS 194
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 46.6 bits (111), Expect = 6e-08
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 73 FLIYDLNNDGFITREEMFQLLR--GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
F D N G + REE L + F D + DG IT +E +
Sbjct: 33 FAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88
Score = 35.0 bits (81), Expect = 0.001
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ +F A D G + +E C + F D + DG IT +E +
Sbjct: 29 LRSVFAACDANRSGRLEREE--FRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARG 86
Query: 93 LRGT 96
G+
Sbjct: 87 FLGS 90
Score = 24.6 bits (54), Expect = 7.2
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1 MERIFCAFDRLGS--LVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGL 57
+ +F A D S L E +L E +F D DG I E+ G
Sbjct: 29 LRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGF 87
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 49.0 bits (117), Expect = 7e-08
Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 25 DLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDG 82
+++EE ++F + G + L+ + E +K F++ + + G
Sbjct: 114 PMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKG 173
Query: 83 FITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ + L+ F D N++G ++R+E +
Sbjct: 174 RMSYIT-LVAVANDLAALVA-DFRKIDTNSNGTLSRKEFREHFV 215
Score = 49.0 bits (117), Expect = 7e-08
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 1 MERIFCAFDRLGS--LVCRELLHNTFDL-VTEEILMERIFCAFDRLCDGVIHLDEWVLGL 57
+ F D + L +E + L ++ + + +F D + E+V
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLG 249
Query: 58 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTN-----EELIKFTFLIYDLNN 112
+++ + D + G +++EE+ ++L + + + F + D+++
Sbjct: 250 ------LCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDD 303
Query: 113 DGFITREEMFQLL 125
++ +E L+
Sbjct: 304 SKSLSYQEFVMLV 316
Score = 46.3 bits (110), Expect = 7e-07
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 4 IFCAFD--RLGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS 58
+F + G ++L L D + E L +++F + G +
Sbjct: 127 LFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPL-KKLFVMVENDTKGRMSYIT------ 179
Query: 59 CFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR---GTNEELIKFTFLIYDLNNDG 114
+ N + F D N++G ++R+E + + + F D +
Sbjct: 180 -LVAVANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESD 238
Query: 115 FITREE 120
+ E
Sbjct: 239 DVGFSE 244
Score = 46.3 bits (110), Expect = 7e-07
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ F D +G + E+ L + + F D + + E L
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVR-LGFDKKSVQDALFRYADEDESDDVGFSEYVHL 248
Query: 93 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+++ + D + G +++EE+ ++L
Sbjct: 249 G--LCLLVLRILYAFADFDKSGQLSKEEVQKVLE 280
Score = 32.5 bits (74), Expect = 0.034
Identities = 8/63 (12%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGTNEEL--IKFTFLIYDLNNDGFITREEMFQ 123
++ + + + G+ +L + E+ ++ FL ++ G + +++ Q
Sbjct: 89 KQRLASLLKDLEDDASGYNRLRPSKPML--SEEDTNILRQLFLSSAVSGSGKFSFQDLKQ 146
Query: 124 LLR 126
+L
Sbjct: 147 VLA 149
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 48.9 bits (116), Expect = 8e-08
Identities = 12/94 (12%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 1 MERIFCAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCF 60
+ +I + + +E + + ++ + + +D G I + + G+
Sbjct: 102 ILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 161
Query: 61 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 94
+ E+ ++ F ++ GF + + LL
Sbjct: 162 CKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLH 194
Score = 37.0 bits (85), Expect = 0.001
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 68 LIKFTFLIYDLNNDGFITREEMFQ----LLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 123
+ + +YD G I L + E+ ++ F ++ GF + +
Sbjct: 133 CLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGL 191
Query: 124 LLR 126
LL
Sbjct: 192 LLH 194
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 48.5 bits (115), Expect = 1e-07
Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 25/146 (17%)
Query: 5 FCAFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT 64
+ L M+ I+ +D G I E L
Sbjct: 79 LANMILPQEENFLLIFRREAPLDNSVEFMK-IWRKYDADSSGYISAAELKNFLKDLFLQH 137
Query: 65 N--------EELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFT------------ 104
+E I+D N DG + ++ ++L L++F
Sbjct: 138 KKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRD 197
Query: 105 ----FLIYDLNNDGFITREEMFQLLR 126
F YD++ G + E+ ++
Sbjct: 198 FEKIFAHYDVSRTGALEGPEVDGFVK 223
Score = 48.1 bits (114), Expect = 2e-07
Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 36/161 (22%)
Query: 1 MERIFCAFDRLGS---------LVCRELLHNTFDLVTEEILME---RIFCAFDRLCDGVI 48
+I+ +D S ++L + L E + FD+ DG +
Sbjct: 106 FMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRL 165
Query: 49 HLDEWV------------LGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR-- 94
L++ + + + + F YD++ G + E+ ++
Sbjct: 166 DLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDM 225
Query: 95 -------GTNEELIKFTFLI---YDLNNDGFITREEMFQLL 125
+ +L KF + D+N DG I + E+ L
Sbjct: 226 MELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCL 266
Score = 42.4 bits (99), Expect = 2e-05
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGT-----------NEELIKFTFLIYDLNN 80
+ + A+D DG + ++E + N + YD ++
Sbjct: 58 IKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADS 117
Query: 81 DGFITREEMFQLLR------------GTNEELIKFTFLIYDLNNDGFITREEMFQLLRYS 128
G+I+ E+ L+ +E I+D N DG + ++ ++L
Sbjct: 118 SGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQ 177
Query: 129 RNQSYNR 135
N
Sbjct: 178 ENFLLQF 184
Score = 33.9 bits (77), Expect = 0.013
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 73 FLIYDLNNDGFITREEMFQLLR--------------GTNEELIKFTFLIYDLNNDGFITR 118
+ +D +++G+I +E+ R +++ K YD DG +
Sbjct: 17 WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQI 76
Query: 119 EEMFQLL 125
EE+ ++
Sbjct: 77 EELANMI 83
Score = 27.7 bits (61), Expect = 1.3
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 105 FLIYDLNNDGFITREEMFQLLR 126
+ +D +++G+I +E+ R
Sbjct: 17 WQHFDADDNGYIEGKELDDFFR 38
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 46.4 bits (111), Expect = 3e-07
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 5 FCAFDRLGSLVCRELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRG 63
F A ++ + R + + L EEI ++ +F D G I +E L L+
Sbjct: 3 FSAMNKFKKMALRVIAES---LSEEEIAGLKEMFNMIDADKSGQITFEE----LKAGLKR 55
Query: 64 -----TNEELIKFTFLI--YDLNNDGFITREE----MFQLLRGTNEELIKFTFLIYDLNN 112
E++ L+ D++N G I +E L + E+ + F +D +
Sbjct: 56 VGANLKESEILD---LMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDG 112
Query: 113 DGFITREEMFQLLR 126
G+IT +E+ Q
Sbjct: 113 SGYITPDELQQACE 126
Score = 44.4 bits (106), Expect = 2e-06
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (7%)
Query: 4 IFCAFDR--LGSLVCREL---LHNT-FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGL 57
+F D G + EL L +L EI + A D G I E++
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRVGANLKESEI--LDLMQAADVDNSGTIDYKEFIAAT 89
Query: 58 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR--GTNEELIKFTFLIYDLNNDGF 115
+ E+ + F +D + G+IT +E+ Q G + I+ D +NDG
Sbjct: 90 LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGR 149
Query: 116 ITREEMFQLLR 126
I E +++
Sbjct: 150 IDYNEFVAMMQ 160
Score = 31.7 bits (73), Expect = 0.051
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 84
+ E+ L F FD+ G I DE L +C G + I+ D +NDG I
Sbjct: 94 KIEREDHLFA-AFTYFDKDGSGYITPDE--LQQACEEFGVEDVRIEELMRDVDQDNDGRI 150
Query: 85 TREEMFQLLRGTN 97
E +++ +
Sbjct: 151 DYNEFVAMMQKGS 163
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 46.8 bits (111), Expect = 3e-07
Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 19/139 (13%)
Query: 1 MERIFCAFDR--LGSLVCREL---------LHNTFDLVTE---EILMERIFCAFDRLCDG 46
+F FD+ G L E+ L V + + G
Sbjct: 50 RIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKG 109
Query: 47 VIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR-----GTNEELI 101
E++ + + F D + + + EE + + G E
Sbjct: 110 SEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDP 169
Query: 102 KFTFLIYDLNNDGFITREE 120
F D N G +T +E
Sbjct: 170 AALFKELDKNGTGSVTFDE 188
Score = 45.7 bits (108), Expect = 7e-07
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 16/115 (13%)
Query: 28 TEEILMER--IFCAFDRLCDGVIHLDEWVLGLSCFL--RGTNEELI--------KFTFLI 75
T E R +F FD+ G + DE G L + K L
Sbjct: 43 TAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLG 102
Query: 76 YDLNNDGFITREE----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L N G E L + + F D + + + EE + +
Sbjct: 103 SKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVP 157
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 46.3 bits (110), Expect = 4e-07
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 29/155 (18%)
Query: 1 MERIFCAFDR--LGSLVCRELLHNTFDLV--------TEEILMERIFCAF----DRLCDG 46
+ +F D G + E+++ D+V + + AF
Sbjct: 18 HKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGV 77
Query: 47 VIHLDEWVLGLSCFLRGTNE-----------ELIKFTFLIYDLNNDGFITREEMFQLLRG 95
++ G E F I D + +G IT +E +
Sbjct: 78 ETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKA 137
Query: 96 TNEEL----IKFTFLIYDLNNDGFITREEMFQLLR 126
+ TF + D++ G + +EM +
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE 88
I + +F D+ +G I LDEW + E + TF + D++ G + +E
Sbjct: 107 IRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Query: 89 MFQLLRG 95
M + G
Sbjct: 167 MTRQHLG 173
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 43.3 bits (103), Expect = 7e-07
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 32 LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQ 91
+ E +F D DG + +E +S NE+L++ F D + +G I + E +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 92 LLRG 95
Sbjct: 61 FYGS 64
Score = 41.8 bits (99), Expect = 2e-06
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 68 LIKFTFLIYDLNNDGFITREEMFQLLR----GTNEELIKFTFLIYDLNNDGFITREEMFQ 123
+ + F D+N DG ++ EE+ + NE+L++ F D + +G I + E +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 124 LLR 126
Sbjct: 61 FYG 63
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 44.0 bits (104), Expect = 8e-07
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 50 LDEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN---EELIKFT 104
+ EW + +K+ F +D G +T + +L ++ +L
Sbjct: 3 VAEWAV--------PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54
Query: 105 FLIYDLNNDGFITREE 120
L D++ DG +T EE
Sbjct: 55 NLS-DIDQDGKLTAEE 69
Score = 30.5 bits (69), Expect = 0.077
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 96 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRYSR 129
+K+ F +D G +T + +L S
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS 44
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 45.3 bits (108), Expect = 9e-07
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 36 IFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREE 88
+F D G I DE L L+ E+ L+ D++ G I E
Sbjct: 15 LFKMIDTDNSGTITFDE----LKDGLKRVGSELMESEIKD---LMDAADIDKSGTIDYGE 67
Query: 89 ----MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L + EE + F +D + G+IT +E+ Q +
Sbjct: 68 FIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACK 109
Score = 33.3 bits (77), Expect = 0.013
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 84
L EE L+ F FD+ G I LDE + +C G ++ I D +NDG I
Sbjct: 77 KLEREENLVS-AFSYFDKDGSGYITLDE--IQQACKDFGLDDIHIDDMIKEIDQDNDGQI 133
Query: 85 TREEMFQLL------RGTNEELIKFTFLI------YDLNNDGFITREEM 121
E ++ G ++ T + D ++ I
Sbjct: 134 DYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFK 182
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 43.2 bits (102), Expect = 1e-06
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 64 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN--EELIKFTFLIYDLNNDGFITRE 119
+ E K+ FL D + DGF++ E+ ++ T L+ + + D + G ++++
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKD 64
Query: 120 E 120
+
Sbjct: 65 Q 65
Score = 29.7 bits (67), Expect = 0.13
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 96 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRYSR 129
+ E K+ FL D + DGF++ E+ ++ +
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG 40
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 43.7 bits (104), Expect = 2e-06
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 91
F FD+ G I D L +LR TN+ + L + +T +++
Sbjct: 10 FTLFDKKGQGAIAKDS----LGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITG 65
Query: 92 LL-----------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L+ + E+ +K F ++D + G ++ ++ +L
Sbjct: 66 LIEVNEKELDATTKAKTEDFVK-AFQVFDKESTGKVSVGDLRYMLT 110
Score = 38.0 bits (89), Expect = 2e-04
Identities = 16/108 (14%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN------EELIKFTFLIYDLNN 80
T +++ + I + LD+ + + + E F ++D +
Sbjct: 37 PTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKES 96
Query: 81 DGFITREEMFQLLRGTNE--------ELIKFTFLIYDLNNDGFITREE 120
G ++ ++ +L G E EL+K +++++G I ++
Sbjct: 97 TGKVSVGDLRYMLTGLGEKLTDAEVDELLKG----VEVDSNGEIDYKK 140
Score = 36.8 bits (86), Expect = 6e-04
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 69 IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLIYDLNNDGFITREE 120
K F ++D G I ++ + LR TN+ + L + +T ++
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQ 62
Score = 26.0 bits (58), Expect = 3.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLR 126
K F ++D G I ++ + LR
Sbjct: 6 NKDIFTLFDKKGQGAIAKDSLGDYLR 31
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 44.3 bits (105), Expect = 2e-06
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 29/153 (18%)
Query: 3 RIFCAFDR--LGSLVCRELLHNTFDLV--------TEEILMERIFCAF----DRLCDGVI 48
+F D G + E++ D + + + AF I
Sbjct: 24 HMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEI 83
Query: 49 HLDEWVLGLSCFLRGTN-----------EELIKFTFLIYDLNNDGFITREEMFQLLRGTN 97
+++ G E F I+D + G IT +E + +
Sbjct: 84 AFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISG 143
Query: 98 EEL----IKFTFLIYDLNNDGFITREEMFQLLR 126
+ TF DL+N G + +EM +
Sbjct: 144 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL 176
Score = 31.3 bits (71), Expect = 0.071
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRGT 96
+ K F D+N +G IT +E+
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDD 49
Score = 30.5 bits (69), Expect = 0.16
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 84
+ + +F FD+ G I LDEW ++E + TF DL+N G +
Sbjct: 107 EPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDL 166
Query: 85 TREEMFQLLRG 95
+EM + G
Sbjct: 167 DVDEMTRQHLG 177
Score = 28.6 bits (64), Expect = 0.56
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
+ K F D+N +G IT +E+
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKAS 47
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 44.4 bits (105), Expect = 2e-06
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ + F DR G + ++E ++G + + I+D + +G I+ E +
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAM 112
Query: 93 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ EL F++ G + E+ L+
Sbjct: 113 YK--FMELAYNLFVMNARARSGTLEPHEILPALQ 144
Score = 37.8 bits (88), Expect = 4e-04
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 1 MERIFCAFD--RLGSLVCREL---LHN---TFDLVTEEILMERIFCAFDRLCDGVIHLDE 52
+ + F D R G+L EL T +M FD +G I E
Sbjct: 53 IYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMR----IFDTDFNGHISFYE 108
Query: 53 WVLGLSCFLRGTNE-ELIKFTFLIYDLNNDGFITREEMFQLLR----GTNEELIKFTFLI 107
F+ EL F++ G + E+ L+ N+ +
Sbjct: 109 -------FMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRL 161
Query: 108 YDLNNDGFITREE 120
+ F
Sbjct: 162 FA-RGMAFCDLNC 173
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 43.9 bits (103), Expect = 3e-06
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 34 ERIFCAFDR---LCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMF 90
++F + R + V+ DE + ++ F + D N DG +T EE+
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
Query: 91 QLLRG---------TNEELIKFTFLIY---DLNNDGFITREEMFQLLRYSRNQSYNR 135
+++ E ++T LI D N G+I E++ LL S +++ R
Sbjct: 122 EIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEAAAR 178
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 42.4 bits (100), Expect = 3e-06
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 51 DEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN--EELIKFTFL 106
+ W + T E+ + F + FI+ + + + +
Sbjct: 12 EPWRI--------TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63
Query: 107 IYDLNNDGFITREE 120
+ D + DG +T E
Sbjct: 64 LSDADCDGALTLPE 77
Score = 30.1 bits (68), Expect = 0.11
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 96 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRYSR 129
T E+ + F + FI+ S+
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK 52
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 41.1 bits (97), Expect = 6e-06
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLR----------GTNEELIKFTFLIYDLNNDGF 115
+ ++ F D N DG++T E+ + +E + D N+DG
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 116 ITREE 120
I++EE
Sbjct: 66 ISKEE 70
Score = 35.3 bits (82), Expect = 0.001
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 98 EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ ++ F D N DG++T E+ +
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMV 34
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 41.3 bits (98), Expect = 2e-05
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 89
F FD+ DG I E L +R T EL +I D + +G I E
Sbjct: 16 FALFDKDGDGTITTKE----LGTVMRSLGQNPTEAELQD---MINEVDADGNGTIDFPEF 68
Query: 90 FQLL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L+ + + EELI+ F ++D + +G I+ E+ ++
Sbjct: 69 LSLMARKMKEQDSEEELIE-AFKVFDRDGNGLISAAELRHVMT 110
Score = 34.4 bits (80), Expect = 0.004
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 13/67 (19%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNND 113
+ + EELI+ F ++D + +G I+ E+ ++ T++E+ I+ D++ D
Sbjct: 79 QDSEEELIE-AFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE----ADIDGD 133
Query: 114 GFITREE 120
G I EE
Sbjct: 134 GHINYEE 140
Score = 31.3 bits (72), Expect = 0.066
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
T E++ K F ++D + DG IT +E+ ++R T EL +I D + +G
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQD---MINEVDADGNG 61
Query: 115 FITREE 120
I E
Sbjct: 62 TIDFPE 67
Score = 25.5 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
T E++ K F ++D + DG IT +E+ ++R
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMR 37
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 40.5 bits (95), Expect = 2e-05
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEEL----IKFTFLIYDLNNDGFITRE 119
++ I F +D I+REE + + L + +N G +
Sbjct: 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP 80
Query: 120 E 120
+
Sbjct: 81 D 81
Score = 34.0 bits (78), Expect = 0.004
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 17 RELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI 75
R++L VT + + F FD + I +E+ + ++ +E +
Sbjct: 9 RDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNE 68
Query: 76 YDLNNDGFITREE 88
+N G + +
Sbjct: 69 MPVNAKGRLKYPD 81
Score = 30.5 bits (69), Expect = 0.066
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 87 EEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ I F +D I+REE +
Sbjct: 12 LARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICN 51
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 40.2 bits (94), Expect = 2e-05
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 73 FLIYDLNNDGFITREEMFQLLRGTN---EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ + N G + + L+ + L K L D + G ++++E F LR
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLA-DTDGKGVLSKQEFFVALR 72
Score = 25.9 bits (57), Expect = 3.1
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 105 FLIYDLNNDGFITREEMFQLLRYSR 129
+ + N G + + L+ S
Sbjct: 17 YRQVEAGNTGRVLALDAAAFLKKSG 41
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 40.3 bits (95), Expect = 2e-05
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 59 CFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL-------RGTNEELIKFTFLIYDLN 111
L + IK F I D + GFI EE+ L R K D +
Sbjct: 34 VGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTD 93
Query: 112 NDGFITREE 120
DG I EE
Sbjct: 94 GDGKIGVEE 102
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 74 LIYDLNNDGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ + F L + IK F I D + GFI EE+ L+
Sbjct: 15 ALSSCQAADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLK 69
Score = 25.3 bits (56), Expect = 4.6
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDE--WVL-GLSCFLRG 63
+ S + ++++F D+ G I +E L S R
Sbjct: 18 SCQAADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARV 77
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRG 95
K D + DG I EE L++
Sbjct: 78 LTSAETKAFLAAGDTDGDGKIGVEEFQSLVKA 109
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 40.5 bits (96), Expect = 3e-05
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 21/103 (20%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 89
F FD+ G I E L+ +R + E+ L+ D++ + I E
Sbjct: 17 FALFDKDNSGSISASE----LATVMRSLGLSPSEAEVAD---LMNEIDVDGNHAIEFSEF 69
Query: 90 FQLL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L+ + +EL++ F ++D N DG I+ E+ +L
Sbjct: 70 LALMSRQLKCNDSEQELLE-AFKVFDKNGDGLISAAELKHVLT 111
Score = 29.7 bits (68), Expect = 0.19
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 45 DGVIHLDEWVLGLSCFL--RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TN 97
+ I E++ +S L + +EL++ F ++D N DG I+ E+ +L T+
Sbjct: 61 NHAIEFSEFLALMSRQLKCNDSEQELLE-AFKVFDKNGDGLISAAELKHVLTSIGEKLTD 119
Query: 98 EELIKFTFLIYDL-NNDGFITREE 120
E+ + ++ ++ + G I ++
Sbjct: 120 AEVDE---MLREVSDGSGEINIKQ 140
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 40.7 bits (96), Expect = 3e-05
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI-YDLNNDGFITREEMF 90
F FDR+ DG I + +R TN E++K D + E
Sbjct: 16 FELFDRVGDGKILYSQ----CGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFL 71
Query: 91 QLL--------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+L +GT E+ ++ F ++D +G + E+ +L
Sbjct: 72 PMLQAVAKNRGQGTYEDYLE-GFRVFDKEGNGKVMGAELRHVLT 114
Score = 34.5 bits (80), Expect = 0.005
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 41 DRLCDGVIHLDEWVLGLSCFLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96
D L + + ++ L + GT E+ ++ F ++D +G + E+ +L
Sbjct: 58 DELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLE-GFRVFDKEGNGKVMGAELRHVLTTL 116
Query: 97 NE--------ELIKFTFLIYDLNNDGFITREE 120
E ++ +++G I E
Sbjct: 117 GEKMTEEEVETVLAG-----HEDSNGCINYEA 143
Score = 33.3 bits (77), Expect = 0.012
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI-YDLNNDGF 115
++L K F ++D DG I + ++R TN E++K D
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRR 64
Query: 116 ITREE 120
+ E
Sbjct: 65 VDFET 69
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 89 MFQLLRGTNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
M + ++L K F ++D DG I + ++R
Sbjct: 1 MIEF---NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMR 37
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 40.6 bits (96), Expect = 3e-05
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 78
+EE++ E F FD G I E L +R T EEL +I D
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKE----LGTVMRMLGQNPTKEELDA---IIEEVDE 67
Query: 79 NNDGFITREE--------MFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ G I EE M + +G +EE + F I+D N DGFI EE+ ++LR
Sbjct: 68 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR 123
Score = 34.5 bits (80), Expect = 0.004
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNNDGFIT 117
EEL F I+D N DGFI EE+ ++LR T E++ +K D NNDG I
Sbjct: 96 EELAN-CFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKD----SDKNNDGRID 150
Query: 118 REE 120
+E
Sbjct: 151 FDE 153
Score = 25.2 bits (56), Expect = 7.6
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG---- 63
F+ ++ R++ + EE+ F FD+ DG I ++E L LR
Sbjct: 75 FEEFLVMMVRQMKEDAKGKSEEELA--NCFRIFDKNADGFIDIEE----LGEILRATGEH 128
Query: 64 -TNEEL---IKFTFLIYDLNNDGFITREEMFQLLRGT 96
T E++ +K D NNDG I +E +++ G
Sbjct: 129 VTEEDIEDLMKD----SDKNNDGRIDFDEFLKMMEGV 161
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 39.3 bits (92), Expect = 3e-05
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 64 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN--EELIKFTFLIYDLNNDGFITRE 119
T+E+ + F + +GFI + + + + + D + DG +T +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLD 63
Query: 120 E 120
E
Sbjct: 64 E 64
Score = 27.8 bits (62), Expect = 0.60
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 96 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRYSR 129
T+E+ + F + +GFI + S+
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK 39
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 40.6 bits (96), Expect = 4e-05
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 78
EE E F FD DG + E L ++ E++ LI YD
Sbjct: 18 LEEQKQEIYEAFSLFDMNNDGFLDYHE----LKVAMKALGFELPKREILD---LIDEYDS 70
Query: 79 NNDGFITREE----MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ ++ M + + + + IK F ++D ++ G I+ + + ++ +
Sbjct: 71 EGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAK 123
Score = 35.6 bits (83), Expect = 0.002
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
++ D++ + + + + + IK F ++D ++ G I+ + + ++ + T+E
Sbjct: 73 RHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDE 132
Query: 99 EL---IKFTFLIYDLNNDGFITREE 120
EL I+ +DL+ DG I E
Sbjct: 133 ELRAMIEE----FDLDGDGEINENE 153
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 40.2 bits (95), Expect = 5e-05
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 23/114 (20%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 78
TEE + E F FD+ DG I E L +R T EL +I D
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKE----LGTVMRSLGQNPTEAELQD---MINEVDA 58
Query: 79 NNDGFITREEMFQLL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ +G I E ++ + EE+ + F ++D + +G+I+ E+ ++
Sbjct: 59 DGNGTIDFPEFLTMMARKMKDTDSEEEIRE-AFRVFDKDGNGYISAAELRHVMT 111
Score = 37.9 bits (89), Expect = 4e-04
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 25/106 (23%)
Query: 28 TEEILMERIFCAFDRLCDGVIHLDEW-----VLGLSCFLRGTNEEL---IKFTFLIYDLN 79
+EE + E F FD+ +G I E LG T+EE+ I+ D++
Sbjct: 82 SEEEIRE-AFRVFDKDGNGYISAAELRHVMTNLGEKL----TDEEVDEMIRE----ADID 132
Query: 80 NDGFITREE--------MFQLLRGTNEELIKFTFLIYDLNNDGFIT 117
DG + EE +E+I+ F
Sbjct: 133 GDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
Score = 36.0 bits (84), Expect = 0.002
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
+G I E++ ++ ++ T+ EE I+ F ++D + +G+I+ E+ ++ T+E
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 99 EL---IKFTFLIYDLNNDGFITREE 120
E+ I+ D++ DG + EE
Sbjct: 121 EVDEMIRE----ADIDGDGQVNYEE 141
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 39.4 bits (93), Expect = 7e-05
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 91
F FDR G I + LR T E+ + + + E+ Q
Sbjct: 11 FSLFDRHGTGRIPKTS----IGDLLRACGQNPTLAEITE-----IESTLPAEVDMEQFLQ 61
Query: 92 LLR--------GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+L G EE +K F ++D + G I E+ +L
Sbjct: 62 VLNRPNGFDMPGDPEEFVK-GFQVFDKDATGMIGVGELRYVLT 103
Score = 33.6 bits (78), Expect = 0.008
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 69 IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLIYDLNNDGFITREE 120
K F ++D + G I + + LLR T E+ + + + E+
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITE-----IESTLPAEVDMEQ 58
Score = 27.9 bits (63), Expect = 0.76
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 63 GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEEL 100
G EE +K F ++D + G I E+ +L E+L
Sbjct: 73 GDPEEFVK-GFQVFDKDATGMIGVGELRYVLTSLGEKL 109
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLR 126
K F ++D + G I + + LLR
Sbjct: 7 YKQAFSLFDRHGTGRIPKTSIGDLLR 32
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 39.0 bits (92), Expect = 9e-05
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 78
TEE E F FD G I + E L +R EE+ K +I D
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKE----LKVAMRALGFEPKKEEIKK---MISEIDK 53
Query: 79 NNDGFITREEMFQLL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
G + + ++ + T EE++K F ++D + G I+ + + ++ +
Sbjct: 54 EGTGKMNFGDFLTVMTQKMSEKDTKEEILK-AFKLFDDDETGKISFKNLKRVAK 106
Score = 36.3 bits (85), Expect = 0.001
Identities = 18/102 (17%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFIT 85
+E + + + D+ G ++ +++ ++ + + +E I F ++D + G I+
Sbjct: 39 PKKEEIKK-MISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKIS 97
Query: 86 REEMFQLLRG-----TNEELIKFTFLI--YDLNNDGFITREE 120
+ + ++ + T+EEL + +I D + DG ++ +E
Sbjct: 98 FKNLKRVAKELGENLTDEELQE---MIDEADRDGDGEVSEQE 136
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 38.4 bits (89), Expect = 9e-05
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 20/68 (29%)
Query: 73 FLIYDLNNDGFITREEMFQLLRGTNEELIKFT--------------------FLIYDLNN 112
F+++D+N+DG + +E+ L E++ D N
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 113 DGFITREE 120
D +T EE
Sbjct: 86 DRLVTLEE 93
Score = 30.7 bits (69), Expect = 0.068
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 105 FLIYDLNNDGFITREEMFQLLRYSRNQSYNRLD 137
F+++D+N+DG + +E+ L + Y+ +
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKN 58
Score = 26.4 bits (58), Expect = 2.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 66 EELIKFTFLIYDLNNDGFITREE 88
+ + D N D +T EE
Sbjct: 71 LRMREHVMKNVDTNQDRLVTLEE 93
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 38.7 bits (91), Expect = 1e-04
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREEM 89
F FD G I E L +R EE+ K +I D + G I EE
Sbjct: 34 FDLFDTDGSGTIDAKE----LKVAMRALGFEPKKEEIKK---MISEIDKDGSGTIDFEEF 86
Query: 90 FQLL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ R + EE++K F ++D +N G IT +++ ++ +
Sbjct: 87 LTMMTAKMGERDSREEILK-AFRLFDDDNSGTITIKDLRRVAK 128
Score = 35.6 bits (83), Expect = 0.002
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNND 113
R + EE++K F ++D +N G IT +++ ++ + T EEL I D N+D
Sbjct: 97 RDSREEILK-AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAE----ADRNDD 151
Query: 114 GFITREE 120
I +E
Sbjct: 152 NEIDEDE 158
Score = 25.6 bits (57), Expect = 5.4
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEEL---IKFTFLIYDLNN 80
EEIL + F FD G I + + L + T EEL I D N+
Sbjct: 101 EEIL--KAFRLFDDDNSGTITIKD----LRRVAKELGENLTEEELQEMIAE----ADRND 150
Query: 81 DGFITREEMFQLLRGTN 97
D I +E ++++ T+
Sbjct: 151 DNEIDEDEFIRIMKKTS 167
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 38.7 bits (90), Expect = 2e-04
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 30 EILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEM 89
+L + + + + + L E K ++ +DLN +G I +
Sbjct: 14 GLLKAQQEERLEGINKQFLDDPK--YSNDEDLPSKLEAF-KVKYMEFDLNGNGDIDIMSL 70
Query: 90 FQLLRG-----TNEELIKFTFLI--YDLNNDGFITREEMFQLLRYSRN 130
++L T+ EL + LI ++ + + +++ R+
Sbjct: 71 KRMLEKLGVPKTHLELKR---LIREVSSGSEETFSYSDFLRMMLGKRS 115
Score = 28.0 bits (62), Expect = 0.80
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLI--YDL 78
L + FD +G I + LG+ T+ EL + LI
Sbjct: 43 LPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPK----THLELKR---LIREVSS 95
Query: 79 NNDGFITREEMFQLLRGTNEELIKFTFLIYDLNND 113
++ + + +++ G +++ + + N +
Sbjct: 96 GSEETFSYSDFLRMMLGKRSAILRMILMYEEKNKE 130
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 38.7 bits (91), Expect = 2e-04
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 25/117 (21%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDL 78
E + E F FD+ DG I+ + L +R T ELI+ L ++
Sbjct: 6 RPEEIEELREAFREFDKDKDGYINCRD----LGNCMRTMGYMPTEMELIE---LSQQINM 58
Query: 79 NNDGFITREEMFQLL---------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
N G + ++ +L+ + ++ F +D N DG I+ E+ + +R
Sbjct: 59 NLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMR 115
Score = 34.8 bits (81), Expect = 0.004
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRG------TNEEL---IKFTFLIYDLNNDGFI 116
+EL F +D N DG I+ E+ + +R + ++ I+ DLN DG +
Sbjct: 88 KELRD-AFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRD----VDLNGDGRV 142
Query: 117 TREE 120
EE
Sbjct: 143 DFEE 146
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 45 DGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE-------MFQLLRGTN 97
+ + L + + IK F + D + GFI +E R
Sbjct: 22 ADSFNYKAFFA--KVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALT 79
Query: 98 EELIKFTFLIYDLNNDGFITREE 120
+ K D + DG I +E
Sbjct: 80 DAETKAFLKAGDSDGDGAIGVDE 102
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 74 LIYDLNNDGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ + F L + + IK F + D + GFI +E+ L+
Sbjct: 15 ALKACEAADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQ 69
Score = 27.2 bits (61), Expect = 1.2
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG--- 63
A + S + +++ F D+ G I DE L L F G
Sbjct: 18 ACEAADSFNYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARA 77
Query: 64 -TNEELIKFTFLIYDLNNDGFITREEMFQLLRG 95
T+ E F D + DG I +E L++
Sbjct: 78 LTDAETKAFLKAG-DSDGDGAIGVDEWAALVKA 109
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 37.9 bits (89), Expect = 3e-04
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 28 TEEI-LMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLN 79
T ++ F FD+ DG + ++E L LR TN EL + +
Sbjct: 1 TASADQIQECFQIFDKDNDGKVSIEE----LGSALRSLGKNPTNAELNT---IKGQLNAK 53
Query: 80 NDGFITREEMFQL----LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
T + +++ ++E++ F D +G I E+ QLL
Sbjct: 54 EFDLATFKTVYRKPIKTPTEQSKEMLD-AFRALDKEGNGTIQEAELRQLLL 103
Score = 32.1 bits (74), Expect = 0.029
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDGFITR 118
+ + F D +G I E+ QLL T+ E+ + L+ ++ DG I
Sbjct: 75 SKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEE---LMKEVSVSGDGAINY 131
Query: 119 EE 120
E
Sbjct: 132 ES 133
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 37.9 bits (89), Expect = 3e-04
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 37 FCAFDRL--CDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEM 89
F FD DG + + L R NE++ + + EE
Sbjct: 15 FELFDFWDGRDGAVDAFK----LGDVCRCLGINPRNEDVFAV--GGTHKMGEKSLPFEEF 68
Query: 90 FQLL-------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+GT + ++ F +D GFI+ E+ +L
Sbjct: 69 LPAYEGLMDCEQGTFADYME-AFKTFDREGQGFISGAELRHVLT 111
Score = 32.1 bits (74), Expect = 0.030
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNE--------ELIKFTFLIYDLNND 113
+GT + ++ F +D GFI+ E+ +L E E+IK T L D +
Sbjct: 80 QGTFADYME-AFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQED--LE 136
Query: 114 GFITREE 120
G + E+
Sbjct: 137 GNVKYED 143
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 37.2 bits (87), Expect = 3e-04
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 84
DL+ + + + + A +G + ++ L+ + +K F D + GFI
Sbjct: 5 DLLKADDIKKAL-DAVKA--EGSFNHKKFFA--LVGLKAMSANDVKKVFKAIDADASGFI 59
Query: 85 TREEMFQLLRGTNEELIKFT-----FLI--YDLNNDGFITREE 120
EE+ +L+ + T + D + DG I +E
Sbjct: 60 EEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 37.2 bits (87), Expect = 3e-04
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 74 LIYDLNNDGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
I + G + F L L+G + +K F I D + GFI EE+ +L+
Sbjct: 14 AISAFKDPGTFDYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLK 68
Score = 37.2 bits (87), Expect = 3e-04
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 61 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTN-----------EELIKFTFLIYD 109
L+G + +K F I D + GFI EE+ +L+G + + L+ D
Sbjct: 35 LKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAA----GD 90
Query: 110 LNNDGFITREE 120
++DG I +E
Sbjct: 91 SDHDGKIGADE 101
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 38.0 bits (89), Expect = 4e-04
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ F A D G I + E LS + + +YD N+ G IT +E L
Sbjct: 29 LMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDL 88
Query: 93 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ F D + DG + E+ L
Sbjct: 89 HHFILS--MREGFRKRDSSGDGRLDSNEVRAALL 120
Score = 36.5 bits (85), Expect = 0.001
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 1 MERIFCAFD--RLGSLVCREL---LHN---TFDLVTEEILMERIFCAFDRLCDGVIHLDE 52
+ F A D G++ EL L + F L T E L+ +D+ G I DE
Sbjct: 29 LMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLH----MYDKNHSGEITFDE 84
Query: 53 WVLGLSCFLRG-TNEELIKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFLI 107
F ++ F D + DG + E+ L + +E+ +
Sbjct: 85 -------FKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRK 137
Query: 108 YDLNNDGFITREE 120
+D G + ++
Sbjct: 138 FDRQRRGSLGFDD 150
Score = 35.0 bits (81), Expect = 0.004
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 25 DLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFI 84
DL + M F D DG + +E L +E+ + +D G +
Sbjct: 87 DLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSL 146
Query: 85 TREEMFQLLRGTNEELIKFTFLIYDLNNDGFIT 117
++ +L ++ F YD G +T
Sbjct: 147 GFDDYVELS--IFVCRVRNVFAFYDRERTGQVT 177
Score = 25.7 bits (57), Expect = 5.7
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 1 MERIFCAFDR--LGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 55
M F D G L E+ L ++ V+E+ + + FDR G + D++V
Sbjct: 95 MREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTF-QALMRKFDRQRRGSLGFDDYV- 152
Query: 56 GLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
+ ++ F YD G +T
Sbjct: 153 --ELSIF---VCRVRNVFAFYDRERTGQVT 177
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 37.5 bits (88), Expect = 4e-04
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YDLNNDGFITREE- 88
F FD G I + L L+ + + D +G I E
Sbjct: 12 FELFDSERTGFITKEG----LQTVLKQFGVRVEPAAFNE---MFNEADATGNGKIQFPEF 64
Query: 89 --MF--QLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
M ++ + T+E++++ F +D G+I + + L
Sbjct: 65 LSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALL 106
Score = 32.1 bits (74), Expect = 0.029
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFIT 85
V +F D +G I E++ + ++ T E++++ F +D G+I
Sbjct: 39 VEPAAF-NEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIP 97
Query: 86 REEMFQLLRGTNEEL 100
+ + L + L
Sbjct: 98 KAALQDALLNLGDRL 112
Score = 25.9 bits (58), Expect = 4.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLR 126
K F ++D GFIT+E + +L+
Sbjct: 8 FKEAFELFDSERTGFITKEGLQTVLK 33
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 37.5 bits (88), Expect = 4e-04
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 28 TEEILME--RIFCAFDR-LCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YD 77
TEE E F F DG I E L +R T EEL + +I D
Sbjct: 13 TEEQKNEFKAAFDIFVLGAEDGSISTKE----LGKVMRMLGQNPTPEELQE---MIDEVD 65
Query: 78 LNNDGFITREE----MFQLLRGTN----EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ G + +E M + ++ + EE + F ++D N DG+I EE+ +L+
Sbjct: 66 EDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQ 122
Score = 35.6 bits (83), Expect = 0.002
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 27 VTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN----EELIKFTFLIYDLNNDG 82
T E L E I D G + DE+++ + ++ + EE + F ++D N DG
Sbjct: 52 PTPEELQEMI-DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADG 110
Query: 83 FITREEMFQLLRG-----TNEEL---IKFTFLIYDLNNDGFITREE 120
+I EE+ +L+ T +++ +K D NNDG I +E
Sbjct: 111 YIDLEELKIMLQATGETITEDDIEELMKD----GDKNNDGRIDYDE 152
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 36.0 bits (84), Expect = 5e-04
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 60 FLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR------GTNEEL---IKFTFLIYDL 110
++R +EE I F ++D N DG I +E +++ T+ E+ +K D
Sbjct: 1 WVRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKE----ADE 56
Query: 111 NNDGFITREEMFQLLRYSRN 130
+ +G I E L++ S+N
Sbjct: 57 DGNGVIDIPEFMDLIKKSKN 76
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 37.2 bits (87), Expect = 6e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 11/103 (10%)
Query: 29 EEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-----GTNEELIKFTFLIYDLNNDGF 83
++ + +F D+ GVI E L L N ++ ++D N
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTE----LQQALSNGTWTPFNPVTVRSIISMFDRENKAG 60
Query: 84 ITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ E + + + F YD +N G I + E+ Q L
Sbjct: 61 VNFSEFTGVWK--YITDWQNVFRTYDRDNSGMIDKNELKQALS 101
Score = 36.1 bits (84), Expect = 0.001
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 25/134 (18%)
Query: 1 MERIFCAFDRLGS---------LVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLD 51
+ +F D+ S F+ VT ++ FDR ++
Sbjct: 9 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIIS----MFDRENKAGVNFS 64
Query: 52 EWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRGT----NEELIKFTFL 106
E F + F YD +N G I + E+ Q L G +++
Sbjct: 65 E-------FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117
Query: 107 IYDLNNDGFITREE 120
+D G I ++
Sbjct: 118 KFDRQGRGQIAFDD 131
Score = 31.8 bits (73), Expect = 0.042
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ +F +DR G+I +E LS F +++ +D G I ++ Q
Sbjct: 76 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 135
Query: 93 LRGTNEELIKFTFLIYDLNNDGFIT 117
+ + F YD + DG+I
Sbjct: 136 C--IVLQRLTDIFRRYDTDQDGWIQ 158
Score = 26.8 bits (60), Expect = 2.1
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 1 MERIFCAFDR--LGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 55
+ +F +DR G + EL L ++++ + + FDR G I D+++
Sbjct: 76 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFH-DILIRKFDRQGRGQIAFDDFI- 133
Query: 56 GLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
+ + L F YD + DG+I
Sbjct: 134 --QGCIV--LQRLTD-IFRRYDTDQDGWIQ 158
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 6e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 31/101 (30%)
Query: 20 LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLS---CFLRGTNEELIKFT---- 72
L+ T + ++R D H + G S + I F
Sbjct: 1635 LYKTSKAAQD---------VWNR-ADN--HFKD-TYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 73 --------FLIYDLNNDGFITREEMFQLLRGTNEELIKFTF 105
+I++ DG + E++F+ + NE +TF
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEI---NEHSTSYTF 1719
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 36.7 bits (86), Expect = 6e-04
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI-YDLNNDGFITREEMF 90
F FDR D I + + R TN E+ K + N IT EE
Sbjct: 14 FLLFDRTGDAKITASQ----VGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFL 69
Query: 91 QLLR--------GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+L+ GT E+ ++ ++D +G + E+ +L
Sbjct: 70 PMLQAAANNKDQGTFEDFVE-GLRVFDKEGNGTVMGAELRHVLA 112
Score = 31.7 bits (73), Expect = 0.038
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI-YDLNNDGF 115
+ K FL++D D IT ++ + R TN E+ K + N
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
Query: 116 ITREE 120
IT EE
Sbjct: 63 ITFEE 67
Score = 30.2 bits (69), Expect = 0.15
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 41 DRLCDGVIHLDEWVLGLSCFLR----GTNEELIKFTFLIYDLNNDGFITREEMFQLLRGT 96
+ + I +E++ L GT E+ ++ ++D +G + E+ +L
Sbjct: 56 EEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVE-GLRVFDKEGNGTVMGAELRHVLATL 114
Query: 97 NE--------ELIKFTFLIYDLNNDGFITREE 120
E EL+K +++G I E
Sbjct: 115 GEKMTEEEVEELMKG-----QEDSNGCINYEA 141
Score = 27.5 bits (62), Expect = 1.2
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
+ K FL++D D IT ++ + R
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIAR 35
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 69 IKFTFLIYDLNNDGFITREEMFQLLRGTNEEL----IKFTFLIYDLNNDGFITREE 120
K F +D N DG ++ +E ++ + I F D++ +G + +E
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
Score = 27.5 bits (62), Expect = 0.42
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLR 126
K F +D N DG ++ +E ++
Sbjct: 3 AKRVFEKFDKNKDGKLSLDEFREVAL 28
Score = 24.8 bits (55), Expect = 4.3
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL----IKFTFLIYDLNNDGFITREE 88
+R+F FD+ DG + LDE + I F D++ +G + +E
Sbjct: 3 AKRVFEKFDKNKDGKLSLDE----FREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 36.8 bits (86), Expect = 7e-04
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEMFQ 91
++ G I +D S R ++ + K +T E+ +
Sbjct: 21 IYFNEKSSGGKISIDN----ASYNARKLGLAPSSIDEKK-----IKELYGDNLTYEQYLE 71
Query: 92 LL------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
L + EELIK F +D N G++T+ +M +L
Sbjct: 72 YLSICVHDKDNVEELIKM-FAHFDNNCTGYLTKSQMKNILT 111
Score = 34.1 bits (79), Expect = 0.006
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 41 DRLCDGVIHLDEWVLGLSCFLRGTN--EELIKFTFLIYDLNNDGFITREEMFQLLRG--- 95
L + ++++ LS + + EELIK F +D N G++T+ +M +L
Sbjct: 57 KELYGDNLTYEQYLEYLSICVHDKDNVEELIKM-FAHFDNNCTGYLTKSQMKNILTTWGD 115
Query: 96 --TNEELIKFTFLIYDLNNDGFITREE 120
T++E I + +++ I +
Sbjct: 116 ALTDQEAID---ALNAFSSEDNIDYKL 139
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 36.8 bits (86), Expect = 8e-04
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 28/119 (23%)
Query: 28 TEEILME--RIFCAFDRL-CDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLI--YD 77
+ + F F+ G + D+ + L T + + LI +D
Sbjct: 8 SSNQVKLLETAFRDFETPEGSGRVSTDQ----IGIILEVLGIQQTKSTIRQ---LIDEFD 60
Query: 78 LNNDGFITREEMFQLL----------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+G I + + +EL + F +YD +G+I+ + M ++L
Sbjct: 61 PFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELRE-AFRLYDKEGNGYISTDVMREILA 118
Score = 33.3 bits (77), Expect = 0.013
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNNDGFIT 117
++ ++ F +YD +G+I+ + M ++L ++E+L I D + G +
Sbjct: 90 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDE----IDADGSGTVD 145
Query: 118 REE 120
EE
Sbjct: 146 FEE 148
Score = 28.7 bits (65), Expect = 0.49
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 8 FDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRG---- 63
FD + R L ++ L E F +D+ +G I D + L
Sbjct: 69 FDSFKIIGARFLGEEVNPEQMQQELRE-AFRLYDKEGNGYISTDV----MREILAELDET 123
Query: 64 -TNEEL---IKFTFLIYDLNNDGFITREEMFQLLRGTNE 98
++E+L I D + G + EE ++ G +E
Sbjct: 124 LSSEDLDAMIDE----IDADGSGTVDFEEFMGVMTGGDE 158
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 35.2 bits (82), Expect = 8e-04
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLR----GTNEELIKFTFLI--YDLNNDGFITRE 119
+ ++ F +D N DG I+ E+ LR + +E+ + ++ D + DGFI
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQR---MMAEIDTDGDGFIDFN 58
Query: 120 E 120
E
Sbjct: 59 E 59
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 98 EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ ++ F +D N DG I+ E+ LR
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALR 30
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 36.0 bits (84), Expect = 8e-04
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLL-------RGTNEELIKFTFLIYDLNNDGFI 116
+ +++ K F + D + GFI +E+ L R + K D + DG I
Sbjct: 39 SLDDVKKA-FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMI 97
Query: 117 TREEMFQLLR 126
+E +++
Sbjct: 98 GVDEFAAMIK 107
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 81 DGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+E F L + + +K F + D + GFI +E+ L+
Sbjct: 21 ADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQ 68
Score = 27.1 bits (61), Expect = 1.2
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDE--WVL-GLSCFLRG 63
A S +E +++ F D+ G I DE L S R
Sbjct: 17 ACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARA 76
Query: 64 TNEELIKFTFLIYDLNNDGFITREEMFQLLRG 95
+ K D + DG I +E +++
Sbjct: 77 LTDAETKAFLADGDKDGDGMIGVDEFAAMIKA 108
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 35.7 bits (83), Expect = 9e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 61 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTF-----LI--YDLNND 113
L+ + + +K F I D + GFI +E+ +L+G + + + L+ D + D
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 114 GFITREE 120
G I EE
Sbjct: 95 GKIGVEE 101
Score = 35.7 bits (83), Expect = 0.001
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 81 DGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ FQ+ L+ + + +K F I D + GFI +E+ +L+
Sbjct: 21 ADSFDHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILK 68
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 34.8 bits (81), Expect = 0.001
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNND 113
R E+L F +D + DG IT +E+ + + G EEL I+ D++ D
Sbjct: 2 RAGLEDLQV-AFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIR----EADVDQD 56
Query: 114 GFITREE 120
G + EE
Sbjct: 57 GRVNYEE 63
Score = 29.0 bits (66), Expect = 0.13
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 94 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
R E+L F +D + DG IT +E+ + +
Sbjct: 2 RAGLEDLQV-AFRAFDQDGDGHITVDELRRAMA 33
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 22/105 (20%)
Query: 37 FCAFDRL--CDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREEM 89
F FD DG + + + LR T ++ + + EE+
Sbjct: 15 FDLFDFWDGRDGDVDAAK----VGDLLRCLGMNPTEAQVHQH--GGTKKMGEKAYKLEEI 68
Query: 90 FQLL--------RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ +E ++ F +D G I+ E+ +L+
Sbjct: 69 LPIYEEMSSKDTGTAADEFME-AFKTFDREGQGLISSAEIRNVLK 112
Score = 30.6 bits (70), Expect = 0.098
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNE--------ELIKFTFLIYDLNND 113
+E ++ F +D G I+ E+ +L+ E ++ F + D D
Sbjct: 81 GTAADEFME-AFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIRED--ID 137
Query: 114 GFITREE 120
G I E+
Sbjct: 138 GNIKYED 144
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 36.0 bits (84), Expect = 0.002
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 21/119 (17%)
Query: 20 LHNTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFT 72
+ ++ + E F D DG + ++ + ++EL
Sbjct: 5 ASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKED----IKAISEQLGRAPDDKELTA-- 58
Query: 73 FLIYDLNNDGFITREE----MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
++ + G + L GT+ EE I+ F ++D + E + LL
Sbjct: 59 -MLKE--APGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLE 114
Score = 32.1 bits (74), Expect = 0.035
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
G ++ ++ S L GT+ EE I+ F ++D + E + LL +
Sbjct: 64 PGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKD 123
Query: 99 EL 100
E+
Sbjct: 124 EM 125
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 35.3 bits (82), Expect = 0.002
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 61 LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTF-----LI--YDLNND 113
+ + +K F I D + GFI +E+ L+ T + D + D
Sbjct: 35 MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGD 94
Query: 114 GFITREE 120
G I EE
Sbjct: 95 GKIGAEE 101
Score = 33.0 bits (76), Expect = 0.010
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 74 LIYDLNNDGFITREEMFQL--LRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ D + ++ FQ+ + + +K F I D + GFI +E+ L+
Sbjct: 14 ALRDCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQ 68
Score = 28.4 bits (64), Expect = 0.41
Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFL---RG 63
S ++ + ++ IF D G I DE L F R
Sbjct: 17 DCQAPDSFSPKKFFQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARV 76
Query: 64 TNEELIKFTFLIYDLNNDGFITREE 88
K D + DG I EE
Sbjct: 77 LTASETKTFLAAADHDGDGKIGAEE 101
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 36.0 bits (84), Expect = 0.002
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 22 NTFDLVTEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLR-----GTNEELIKFTFL 74
N F + E + + F D+ DG+I D+ L E +
Sbjct: 14 NVFSMFDETEIEDFKEAFTVIDQNADGIIDKDD----LRETFAAMGRLNVKNEELD---- 65
Query: 75 IYDLNNDGFITREE----MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
G I + L+G + E++I F + D + G I + + +LL
Sbjct: 66 AMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLT 122
Score = 34.5 bits (80), Expect = 0.005
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 24 FDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDG 82
V E L + G I+ ++ L+G + E++I F + D + G
Sbjct: 56 RLNVKNEELDA-----MIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKG 110
Query: 83 FITREEMFQLLRGTNEEL----IKFTFLIYDLNNDGFITREEMFQLLR 126
I + + +LL IK + + + G + + + ++
Sbjct: 111 SIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158
Score = 25.2 bits (56), Expect = 7.5
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 28 TEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEEL----IKFTFLIYDLNNDGF 83
E+++M F D G I L L IK + + + G
Sbjct: 93 PEDVIMG-AFKVLDPDGKGSIKKSF----LEELLTTGGGRFTPEEIKNMWAAFPPDVAGN 147
Query: 84 ITREEMFQLLRGTNEE 99
+ + + ++ +
Sbjct: 148 VDYKNICYVITHGEDA 163
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 34.5 bits (80), Expect = 0.002
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG----TNEELIKFTFLI--YDLNNDGF 115
T +++ + F +D N DG I+ E+ L+ T +E+ + ++ D + DGF
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRR---MMAEIDTDGDGF 62
Query: 116 ITREEMFQLLRYSRN 130
I+ +E R +R
Sbjct: 63 ISFDEFTDFARANRG 77
Score = 26.8 bits (60), Expect = 1.2
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLI--YDLNNDGF 83
T + + + RIF FD DG I E L T +E+ + ++ D + DGF
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRR---MMAEIDTDGDGF 62
Query: 84 ITREE---MFQLLRGTNEELIK 102
I+ +E + RG +++ K
Sbjct: 63 ISFDEFTDFARANRGLVKDVSK 84
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 34.6 bits (80), Expect = 0.002
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
+ EE+ + F + D + +G+I+ E+ ++ T+EE+ + +I D++ DG
Sbjct: 25 TDSEEEIRE-AFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDE---MIREADIDGDG 80
Query: 115 FITREE 120
+ EE
Sbjct: 81 QVNYEE 86
Score = 29.6 bits (67), Expect = 0.14
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 94 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ EE+ + F + D + +G+I+ E+ ++
Sbjct: 25 TDSEEEIRE-AFRVEDKDGNGYISAAELRHVMT 56
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 34.6 bits (80), Expect = 0.002
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 58 SCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRGTNEELIKFT-----FLI--YDL 110
+ L + +K F D + G++ +E+ L+ + + T L+ D
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADN 91
Query: 111 NNDGFITREEMFQLLR 126
+ DG I +E +++
Sbjct: 92 DGDGKIGADEFQEMVH 107
Score = 26.9 bits (60), Expect = 1.4
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 7 AFDRLGSLVCRELLHNTFDLVTEEIL-MERIFCAFDRLCDGVIHLDEWVLGLSCF---LR 62
+ ++ T L ++ IF D G + DE L F R
Sbjct: 17 ECQDPDTFEPQKFFQ-TSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDAR 75
Query: 63 GTNEELIKFTFLIYDLNNDGFITREEMFQLLR 94
E K D + DG I +E +++
Sbjct: 76 ELTESETKSLMDAADNDGDGKIGADEFQEMVH 107
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 35.2 bits (82), Expect = 0.002
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
G I+ ++ L GT+ E++I+ F +D GFI + + +LL T+E
Sbjct: 53 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 112
Query: 99 EL---IKFTFLIYDLNNDGFITREEMFQLLR 126
E+ + ++ G E ++L+
Sbjct: 113 EVDEMYRE----APIDKKGNFNYVEFTRILK 139
Score = 34.0 bits (79), Expect = 0.006
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 19/100 (19%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREE--- 88
F D+ DG I ++ L L T+E L G I
Sbjct: 13 FNMIDQNRDGFIDKED----LHDMLASMGKNPTDEYLEG-----MMSEAPGPINFTMFLT 63
Query: 89 -MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ L GT+ E++I+ F +D GFI + + +LL
Sbjct: 64 MFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLT 103
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 34.7 bits (80), Expect = 0.003
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
+L K ++ +DLN +G I + ++L T+ EL K LI +
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKK---LIGEVSSGSGE 83
Query: 115 FITREE 120
+ +
Sbjct: 84 TFSYPD 89
Score = 30.4 bits (69), Expect = 0.077
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
+L K ++ +DLN +G I + ++L
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLE 59
Score = 25.0 bits (55), Expect = 5.9
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 28 TEEILME--RIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLI--YDL 78
L + FD +G I + LG+ T+ EL K LI
Sbjct: 27 LPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPK----THLELKK---LIGEVSS 79
Query: 79 NNDGFITREEMFQLLRGTNEELIKFTFL 106
+ + + +++ G ++K +
Sbjct: 80 GSGETFSYPDFLRMMLGKRSAILKMILM 107
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 51 DEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN---EELIKFTF 105
W + E+ K+ F +GF++ +++ +L + + L +
Sbjct: 5 SPWAV--------KPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55
Query: 106 LIYDLNNDGFITREEMFQLLR 126
L D+++DG + R+E +
Sbjct: 56 LS-DIDHDGMLDRDEFAVAMF 75
Score = 26.7 bits (59), Expect = 1.6
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 34 ERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 93
+ IF + +G + D+ V + + + L + L D+++DG + R+E +
Sbjct: 18 DAIFDSLSP-VNGFLSGDK-VKPVLLNSKLPVDILGRVWELS-DIDHDGMLDRDEFAVAM 74
Query: 94 R 94
Sbjct: 75 F 75
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 34.4 bits (79), Expect = 0.004
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDGFITR 118
K ++ +DLNN+G I + +++ T+ E+ K +I I+
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKK---MISEVTGGVSDTISY 105
Query: 119 EE 120
+
Sbjct: 106 RD 107
Score = 29.8 bits (67), Expect = 0.19
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 98 EELIKFTFLIYDLNNDGFITREEMFQLLR 126
K ++ +DLNN+G I + +++
Sbjct: 49 LTAFKEKYMEFDLNNEGEIDLMSLKRMME 77
Score = 29.8 bits (67), Expect = 0.22
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 24 FDLVTEEIL-MERIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFLI-- 75
+ + E++ + + FD +G I L LG+ T+ E+ K +I
Sbjct: 42 EENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPK----THLEMKK---MISE 94
Query: 76 YDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDG 114
I+ + ++ G ++K ++++ +
Sbjct: 95 VTGGVSDTISYRDFVNMMLGKRSAVLKL-VMMFEGKANE 132
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 34.1 bits (78), Expect = 0.005
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 64 TNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN---EELIKFTFLIYDL---NNDGF 115
++ + F +G IT + + + L K I+ L + DG
Sbjct: 46 VGKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGK----IWKLADVDKDGL 100
Query: 116 ITREE 120
+ EE
Sbjct: 101 LDDEE 105
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 33.3 bits (77), Expect = 0.005
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNEEL---IKFTFLIYDLNND 113
EEL + F ++D + +G+I+ E+ ++ T+EE+ IK DL+ D
Sbjct: 5 TDAEEELKE-AFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK----EADLDGD 59
Query: 114 GFITREE 120
G + EE
Sbjct: 60 GQVNYEE 66
Score = 29.9 bits (68), Expect = 0.099
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 91 QLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ EEL + F ++D + +G+I+ E+ ++
Sbjct: 2 HMDTDAEEELKE-AFKVFDKDQNGYISASELRHVMI 36
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.9 bits (79), Expect = 0.006
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 69 IKFTFLIYDLNNDGFITREEMFQLLRGTN----EELIKFTFLIYDLNNDGFITREEMFQL 124
I D N D + +E+ L+ N + + F D + + EE+
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 125 LR 126
+
Sbjct: 73 YK 74
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 34.2 bits (79), Expect = 0.008
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 22 NTFDLVTEEILME--RIFCAFDRLCDGVIHLDE-----WVLGLSCFLRGTNEELIKFTFL 74
N F + T+ + E F D+ DG I ++ LG C T +EL +
Sbjct: 46 NVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC----TEQELDS---M 98
Query: 75 IYDLNNDGFITREE----MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ + G I + GT+ E++I F ++D DG E + + L
Sbjct: 99 VAE--APGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLT 152
Score = 31.1 bits (71), Expect = 0.085
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
G I+ ++ + GT+ E++I F ++D DG E + + L + +
Sbjct: 103 PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQD 161
Query: 99 EL---IKFTFLIYDLNNDGFITREEMFQLLR 126
E+ + ++ +G I ++ Q+L
Sbjct: 162 EVDQALSE----APIDGNGLIDIKKFAQILT 188
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 33.6 bits (78), Expect = 0.008
Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 37 FCAFDRLCDGVIHLDEWVLGLSCFLRG-----TNEELIKFTFLIYDLNNDGFITREE--- 88
F D+ DG I +++ L ++EL ++ + G +
Sbjct: 22 FTMIDQDRDGFIGMED----LKDMFSSLGRVPPDDELNA---MLKEC--PGQLNFTAFLT 72
Query: 89 -MFQLLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLR 126
+ + GT+ E+ ++ F ++D + GFI + + LL
Sbjct: 73 LFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLE 112
Score = 31.3 bits (72), Expect = 0.062
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 45 DGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLNNDGFITREEMFQLLRG-----TNE 98
G ++ ++ + GT+ E+ ++ F ++D + GFI + + LL + E
Sbjct: 62 PGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKE 121
Query: 99 EL 100
E+
Sbjct: 122 EI 123
Score = 25.9 bits (58), Expect = 4.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 101 IKFTFLIYDLNNDGFITREEMFQLLR 126
+K F + D + DGFI E++ +
Sbjct: 18 LKEAFTMIDQDRDGFIGMEDLKDMFS 43
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 33.3 bits (76), Expect = 0.009
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 51 DEWVLGLSCFLRGTNEELIKFT--FLIYDLNNDGFITREEMFQLLRGTN--EELIKFTFL 106
D W + T EE K F GFIT ++ + + ++ +
Sbjct: 23 DTWAI--------TVEERAKHDQQFHSLK-PISGFITGDQARNFFFQSGLPQPVLAQIWA 73
Query: 107 IYDLNNDGFITREE 120
+ D+NNDG + + E
Sbjct: 74 LADMNNDGRMDQVE 87
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 32.1 bits (74), Expect = 0.014
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
+ E+ IK F ++D N G I E+ +R E+++ L+ YD +G
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILE---LMNEYDREGNG 58
Query: 115 FITREE 120
+I ++
Sbjct: 59 YIGFDD 64
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
+ E+ IK F ++D N G I E+ +R
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMR 34
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 31.8 bits (73), Expect = 0.020
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
T EE K F ++D +ND +T EE+ ++R T +++ + ++ YD +N G
Sbjct: 9 TAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISE---IVKDYDKDNSG 65
Query: 115 FITREE 120
+E
Sbjct: 66 KFDQET 71
Score = 27.6 bits (62), Expect = 0.57
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
T EE K F ++D +ND +T EE+ ++R
Sbjct: 9 TAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMR 41
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 32.3 bits (74), Expect = 0.021
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 14/74 (18%)
Query: 62 RGTNEELIKFTFLIYDLNNDGFITREEMFQLLRG------TNEEL---IKFTFLIYDLNN 112
EL K F + IT E + + + E+ ++ DL+
Sbjct: 36 EEFVSELCK-GFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVRE----GDLDG 90
Query: 113 DGFITREEMFQLLR 126
DG + + E L+
Sbjct: 91 DGALNQTEFCVLMV 104
Score = 27.7 bits (62), Expect = 0.90
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 33 MERIFCAFDRLCDGVIHLDE--WVLGLSCFLRGTNEEL---IKFTFLIYDLNNDGFITRE 87
+ + F +I + G+ + E+ ++ DL+ DG + +
Sbjct: 42 LCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVRE----GDLDGDGALNQT 97
Query: 88 EMFQLLRGTNEELIK 102
E L+ + E+++
Sbjct: 98 EFCVLMVRLSPEMME 112
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 31.8 bits (73), Expect = 0.022
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
+ E + K F ++D + G I+ +E+ ++R T EEL +I D + G
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDA---IIEEVDEDGSG 71
Query: 115 FITREE 120
I EE
Sbjct: 72 TIDFEE 77
Score = 28.0 bits (63), Expect = 0.46
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 96 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
+ E + K F ++D + G I+ +E+ ++R
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMR 47
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 31.3 bits (72), Expect = 0.029
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 79 NNDGFITREEMFQLLRGTNEEL--IKFTFLIYDLNNDGFITREEMFQLLR 126
++ G I ++ R + EE+ +K F + D +N G IT +E+ L+
Sbjct: 1 HSSGHIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLK 50
Score = 31.0 bits (71), Expect = 0.033
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 64 TNEEL--IKFTFLIYDLNNDGFITREEMFQLLRG-----TNEELIKFTFLI--YDLNNDG 114
+ EE+ +K F + D +N G IT +E+ L+ E+ L+ D++ G
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKD---LMDAADIDKSG 74
Query: 115 FITREE 120
I E
Sbjct: 75 TIDYGE 80
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 31.9 bits (71), Expect = 0.054
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 66 EELIKFTFLIYDLN-NDGFITREEMFQLLRG--TNEELIKFTFLIYDLNNDGFITREE 120
+ + F D + DG+++ E+ L E F DL+ND +I +E
Sbjct: 154 IFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDE 211
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.9 bits (68), Expect = 0.073
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 64 TNEELIKFTFLIYDLN--NDGFITREEMFQLLR------GTNEELIKFTFLIYDLNNDGF 115
+ E IK F ++ + I++EE+ +++ + D N DG
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 116 ITREE 120
++ EE
Sbjct: 62 VSFEE 66
Score = 25.6 bits (57), Expect = 2.9
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 96 TNEELIKFTFLIYDLN--NDGFITREEMFQLLR 126
+ E IK F ++ + I++EE+ +++
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQ 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.14
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 29/151 (19%)
Query: 16 CRELLH---NTF--DLVTEEI--LMERIFCAFDRLCDGVI---HLDEWVLGLSCFLRGTN 65
+++L + F + +++ + + I D +I L L L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 66 EELIKFTFLIYDLNND-GFITREEMFQLLRGTNEELIKFTFLIYDLNNDG------FITR 118
EE+++ F+ L + F+ + R + + L ND ++R
Sbjct: 76 EEMVQ-KFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 119 EEMFQLLRYSRNQSYNRL-DLNVGTLCVVQG 148
+ + LR L +L ++ G
Sbjct: 134 LQPYLKLR-------QALLELRPAKNVLIDG 157
Score = 27.9 bits (61), Expect = 1.6
Identities = 15/122 (12%), Positives = 39/122 (31%), Gaps = 28/122 (22%)
Query: 14 LVCRELLHNTFDLVT----EEILM-----ERIFCAFDRLCD-----------GVIHLD-E 52
C+++ +++ + I+M F L V+ ++ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 53 WVLG-LSCFLRGTNEELIKFTFLIYDLNNDG------FITREEMFQLLRGTNEELIKFTF 105
+++ + R + + L ND ++R + + LR EL
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 106 LI 107
++
Sbjct: 153 VL 154
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 30.7 bits (70), Expect = 0.17
Identities = 6/57 (10%), Positives = 10/57 (17%), Gaps = 1/57 (1%)
Query: 66 EELIKFTFLIYDLNNDGFITREEMFQLLRGTN-EELIKFTFLIYDLNNDGFITREEM 121
I + + I + Q L + DG
Sbjct: 381 HTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHF 437
Score = 26.1 bits (58), Expect = 4.9
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 1/43 (2%)
Query: 83 FITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLL 125
F E ++ I + + I + Q L
Sbjct: 367 FYF-ENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYL 408
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 30.1 bits (68), Expect = 0.20
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 34 ERIFCAFDRLCD--GVIHLDE-----WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITR 86
+ ++ F + G I DE G++ + N E + + D + G +
Sbjct: 33 DPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 92
Query: 87 EEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E +L N + F+ +D + G + +E+ + L
Sbjct: 93 NEFKELWAVLNG--WRQHFISFDTDRSGTVDPQELQKALT 130
Score = 28.2 bits (63), Expect = 0.94
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 1 MERIFCAFD--RLGSLVCREL---LHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVL 55
+ F +FD R G++ +EL L ++ + + I + +G I D+++
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAV-NSIAKRYST--NGKITFDDYI- 160
Query: 56 GLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
+C ++ + +F D G +
Sbjct: 161 --ACCVK---LRALTDSFRRRDTAQQGVVN 185
Score = 27.4 bits (61), Expect = 1.6
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 21 HNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNN 80
+ F+L T +++ DR G + +E L L G + F+ +D +
Sbjct: 67 YKPFNLETCRLMVS----MLDRDMSGTMGFNE-FKELWAVLNG-----WRQHFISFDTDR 116
Query: 81 DGFITREEMFQLLRGT----NEELIKFTFLIYDLNN----DGFI 116
G + +E+ + L + + + Y N D +I
Sbjct: 117 SGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYI 160
Score = 25.9 bits (57), Expect = 4.8
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNN----DGFITREE 88
+ F +FD G + E L+ + + + Y N D +I
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYI--AC 162
Query: 89 MFQLLRGTNEELIKFTFLIYDLNNDGFIT 117
+L T+ +F D G +
Sbjct: 163 CVKLRALTD------SFRRRDTAQQGVVN 185
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 29.9 bits (67), Expect = 0.32
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 70 KFTFLIYDLNNDGFITREEMFQLL--------RGTNEELIKFTFLIYDLNNDGFITREEM 121
++ + L NDG + + + +I+ T YD N +T+ E+
Sbjct: 38 GYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEV 97
Query: 122 FQLLRYSR 129
+L+ Y++
Sbjct: 98 TELIEYAK 105
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 28.9 bits (65), Expect = 0.42
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 33 MERIFCAFDRLCD--GVIHLDE-----WVLGLSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
M+ ++ F + G I DE G++ + N E + + D + G +
Sbjct: 1 MDPLYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMG 60
Query: 86 REEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
E +L + F+ +D + G + +E+ + L
Sbjct: 61 FNEFKELWA--VLNGWRQHFISFDSDRSGTVDPQELQKALT 99
Score = 27.0 bits (60), Expect = 2.3
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 1 MERIFCAFD--RLGSLVCRELLH--NTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLG 56
+ F +FD R G++ +EL T + I + G I D+++
Sbjct: 74 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYST--SGKITFDDYI-- 129
Query: 57 LSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
+C ++ + +F D G +
Sbjct: 130 -ACCVK---LRALTDSFRRRDSAQQGMVN 154
Score = 26.6 bits (59), Expect = 2.4
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 12/89 (13%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREE---- 88
+ F +FD G + E L+ N + + Y G IT ++
Sbjct: 74 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS--TSGKITFDDYIAC 131
Query: 89 MFQLLRGTNEELIKFTFLIYDLNNDGFIT 117
+L T+ +F D G +
Sbjct: 132 CVKLRALTD------SFRRRDSAQQGMVN 154
Score = 25.4 bits (56), Expect = 7.3
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 21 HNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTN-EELIKFTFLIYDLN 79
+ F+L T +++ DR G + +E F + F+ +D +
Sbjct: 36 YKPFNLETCRLMVS----MLDRDMSGTMGFNE-------FKELWAVLNGWRQHFISFDSD 84
Query: 80 NDGFITREEMFQLLR----GTNEELIKFTFLIYDLNNDGFITREE 120
G + +E+ + L N + + Y G IT ++
Sbjct: 85 RSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYS--TSGKITFDD 127
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 28.7 bits (63), Expect = 0.46
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 70 KFTFLIYDLN-NDGFITREEMFQLLRG--TNEELIKFTFLIYDLNNDGFITREE 120
+F L D + DG+++ E+ L E F DL+ND +I +E
Sbjct: 82 QFGQL--DQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDE 133
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 28.9 bits (65), Expect = 0.47
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 76 YDLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
D ++ G + +L K F+ D + G + E+ Q +
Sbjct: 49 LDRDHTGKMGFNAFKELWA--ALNAWKENFMTVDQDGSGTVEHHELRQAIG 97
Score = 25.8 bits (57), Expect = 4.6
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 1 MERIFCAFD--RLGSLVCRELLH--NTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLG 56
+ F D G++ EL + I + + +G I D++V
Sbjct: 72 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--NGRIFFDDYV-- 127
Query: 57 LSCFLRGTNEELIKFTFLIYDLNNDGFIT 85
+C ++ + F D G
Sbjct: 128 -ACCVK---LRALTDFFRKRDHLQQGSAN 152
Score = 25.0 bits (55), Expect = 8.5
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 21 HNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLR-GTNEELIKFTFLIYDLN 79
++ F L T I++ DR G + + F K F+ D +
Sbjct: 34 YSPFSLETCRIMIA----MLDRDHTGKMGFNA-------FKELWAALNAWKENFMTVDQD 82
Query: 80 NDGFITREEMFQLLRGT----NEELIKFTFLIYDLNNDGFITREE 120
G + E+ Q + + + + Y +G I ++
Sbjct: 83 GSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFFDD 125
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH,
cell WALL, STR genomics, PSI-2, protein structure
initiative; 1.80A {Bacillus anthracis}
Length = 203
Score = 28.5 bits (64), Expect = 0.64
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 35/80 (43%)
Query: 81 DGF-----ITREEMFQLL--------RGTNEELIKFT------------FLIYDLN---- 111
+GF I R M LL + KF ++ +L
Sbjct: 92 NGFEPNGKIDRVSMASLLVEAYKLDTKVNGTPATKFKDLETLNWGKEKANILVELGISVG 151
Query: 112 -NDGF-----ITREEMFQLL 125
D + +T+ E Q +
Sbjct: 152 TGDQWEPKKTVTKAEAAQFI 171
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 27.1 bits (60), Expect = 1.0
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 67 ELIKFTFLIYDLNNDGFITREEMFQLLRG---------TNEELIKFTFLIYDLNNDGFIT 117
E + FTF + + G++T+E++ L+ + + D DG +
Sbjct: 9 ETMMFTFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG 67
Query: 118 REEMFQLL 125
+ F L+
Sbjct: 68 FQSFFSLI 75
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 28.1 bits (62), Expect = 1.2
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 45 DGVIHLDEWVLGLSCFLRGTNEELIKFT-FLIYDLNNDGFITREEMFQLLRGTNEELIKF 103
+H DE V E L+ +L+ D IT L+ T
Sbjct: 62 VANMHGDETV---------GRELLLHLIDYLVTSDGKDPEITN-----LINSTR------ 101
Query: 104 TFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
++ +N DGF ++ ++YN+ DLN
Sbjct: 102 IHIMPSMNPDGFEAVKKPDCYYSI-GRENYNQYDLN 136
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein
structure, MCCC7, peptide antibiotics, N-P bond
formation, transferase; HET: ATP; 1.90A {Escherichia
coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Length = 353
Score = 27.4 bits (61), Expect = 1.8
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 83 FITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMF---QLLRYSRN 130
FIT L N F+ L + FI E + RYSRN
Sbjct: 48 FITPSSYTAALETANIPEKDFSNCFRFLKENFFIIPGEYNNSTENNRYSRN 98
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 27.0 bits (60), Expect = 2.3
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 33 MERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIYDLNNDGFITREEMFQL 92
+ I+ FD G I E NE L Y + G + +
Sbjct: 79 WQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDNFISC 137
Query: 93 LRGTNEELIKFTFLIYDLNNDGFIT--REEMFQLLRYS 128
L + + F D + G I +E QL YS
Sbjct: 138 L--VRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTMYS 173
Score = 26.2 bits (58), Expect = 3.6
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 15/108 (13%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIKFTFLIY 76
+L + F + T ++ D G + +E L ++ + + +
Sbjct: 37 PDLKTDGFGIDTCRSMVA----VMDSDTTGKLGFEE-FKYLWNNIKK-----WQAIYKQF 86
Query: 77 DLNNDGFITREEMFQLLR----GTNEELIKFTFLIYDLNNDGFITREE 120
D++ G I E+ NE L Y + G + +
Sbjct: 87 DVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYS-DEGGNMDFDN 133
Score = 25.1 bits (55), Expect = 9.6
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 77 DLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLR 126
D + G + EE L N + + + +D++ G I E+
Sbjct: 57 DSDTTGKLGFEEFKYLWN--NIKKWQAIYKQFDVDRSGTIGSSELPGAFE 104
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 25.3 bits (56), Expect = 3.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 71 FTFLIYDLNNDGFITREEMFQLLRGTNEELIKFTFLI-YDLNNDGFITREEMFQLLRY 127
F L DLN DG I ++ L + + + DLNNDG I ++ L +Y
Sbjct: 2 FVKLKGDLNGDGVINMADVMILAQSFGKAIGNPGVNEKADLNNDGVINSDDAIILAQY 59
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 27.0 bits (59), Expect = 3.1
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 80 NDGF-ITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSR 129
ND + I+R++ F LLR L +F +N D I R + QL+ R
Sbjct: 731 NDNYGISRQQAFNLLRSDPRVLREF------INQDNPIIRNRIEQLIMQCR 775
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 26.5 bits (57), Expect = 4.9
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 71 FTFLIYDLNNDGFITREEMFQLLRGTNEEL------IKFTFLIYDLNNDGFITREEMFQL 124
L LN++G I + FQ+ + + D N
Sbjct: 152 LVKLKMQLNSEGKIPVKNFFQMFPADRKRVEAALSACHLPKGKNDAINPEDFPEPVYKSF 211
Query: 125 LR 126
L
Sbjct: 212 LM 213
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 24.7 bits (54), Expect = 6.1
Identities = 7/54 (12%), Positives = 21/54 (38%)
Query: 17 RELLHNTFDLVTEEILMERIFCAFDRLCDGVIHLDEWVLGLSCFLRGTNEELIK 70
++LL + + F D DG ++ E+++ + +++ +
Sbjct: 35 KKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHE 88
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 24.9 bits (55), Expect = 6.2
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 77 DLNNDGFITREE--MFQ--LLRGTNEELIKFTFLIYDLNNDGFIT 117
D+N+DG + + + + +L+ + D+N DG +
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVN 68
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 26.0 bits (57), Expect = 6.7
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 22/96 (22%)
Query: 45 DGVIHLDEWVLGLSCFLRGTNEELIKFT-FLIYDLNNDGFITREEMFQLLRGTNEELIKF 103
G +H +E V E L+ +L + D +T L++ T
Sbjct: 67 IGNMHGNEVV---------GRELLLNLIEYLCKNFGTDPEVTD-----LVQSTR------ 106
Query: 104 TFLIYDLNNDGFITREEMFQLLRYSRNQSYNRLDLN 139
++ +N DG+ +E + R + N DLN
Sbjct: 107 IHIMPSMNPDGYEKSQEGDRGGTVGR-NNSNNYDLN 141
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 24.2 bits (53), Expect = 9.0
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 67 ELIKFTFLIYDLN--NDGFITREEMFQLLRG------TNEELIKFTFLIYDLNNDGFITR 118
+K F Y + +++EE+ QL++ + F D N DG ++
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 119 EEMFQLL 125
EE L+
Sbjct: 67 EEFQVLV 73
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 25.0 bits (54), Expect = 9.4
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 77 DLNNDGFITREEMFQLLRGTNEELIKFTFLIYDLNNDGFITREEMFQLLRYSRNQSYN 134
D + DG I EE + +R + + D IT E++++ + S ++
Sbjct: 25 DDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHREDKHITIEDLWKRWKTSEVHNWT 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.148 0.454
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,407,692
Number of extensions: 143041
Number of successful extensions: 1291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 379
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)