BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9943
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXW|F Chain F, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1VYH|A Chain A, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|B Chain B, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|E Chain E, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|F Chain F, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|I Chain I, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|J Chain J, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|M Chain M, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|N Chain N, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|Q Chain Q, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|R Chain R, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 229
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG NPL +K VN + + D + SD IS D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLPKLANV----QLLDTDGGFVHSDGAISCHDMFDF 194
Query: 65 LRLTESGSRKVFGPIHDII 83
L LT G K+ P+H++I
Sbjct: 195 LHLTGGGYAKICKPLHELI 213
>pdb|1ES9|A Chain A, X-Ray Crystal Structure Of R22k Mutant Of The Mammalian
Brain Platelet-Activating Factor Acetylhydrolases
(Paf-Ah)
Length = 232
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|1FXW|A Chain A, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1WAB|A Chain A, Platelet-Activating Factor Acetylhydrolase
Length = 232
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|1BWP|A Chain A, Probing The Substrate Specificity Of The Intracellular
Brain Platelet-Activating Factor Acetylhydrolase
Length = 233
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|1BWR|A Chain A, Probing The Substrate Specificity Of The Intracellular
Brain Platelet-Activating Factor Acetylhydrolase
Length = 233
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|3DT8|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 232
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|3DT6|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3DT9|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
Length = 232
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L L+ G V
Sbjct: 194 LHLSRLGYTPV 204
>pdb|1BWQ|A Chain A, Probing The Substrate Specificity Of The Intracellular
Brain Platelet-Activating Factor Acetylhydrolase
Length = 233
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 5 LLPRGRNRNPLWEKFFAVNXXXXXXXXXXXXXXXXXEFISHDISDLVSDDRISAGDFFDF 64
LLPRG++ NPL EK VN F+ D + SD IS D +D+
Sbjct: 138 LLPRGQHPNPLREKNRRVN----ELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDY 193
Query: 65 LRLTESGSRKV 75
L+ G V
Sbjct: 194 AHLSRLGYTPV 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,996,945
Number of Sequences: 62578
Number of extensions: 47033
Number of successful extensions: 98
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 8
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)