BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9943
         (135 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O35264|PA1B2_RAT Platelet-activating factor acetylhydrolase IB subunit beta
           OS=Rattus norvegicus GN=Pafah1b2 PE=1 SV=1
          Length = 229

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN+LLK SL  +L++   L+    D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLP-KLANVQLLDI---DGGFVHSDGAISCHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT  G  K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGGYAKICKPLHELIMQLLEETPEEKQTT 227


>sp|Q61206|PA1B2_MOUSE Platelet-activating factor acetylhydrolase IB subunit beta OS=Mus
           musculus GN=Pafah1b2 PE=1 SV=2
          Length = 229

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN+LLK SL  +L++   L+    D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLP-KLANVQLLDI---DGGFVHSDGAISCHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT  G  K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGGYAKICKPLHELIMQLLEETPEEKQTT 227


>sp|Q5R4G2|PA1B2_PONAB Platelet-activating factor acetylhydrolase IB subunit beta OS=Pongo
           abelii GN=PAFAH1B2 PE=2 SV=1
          Length = 229

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN+LLK SL  +L++   ++ +  D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLP-KLAN---VQLLDTDGGFVHSDGAISCHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT  G  K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGGYAKICKPLHELIMQLLEETPEEKQTT 227


>sp|P68402|PA1B2_HUMAN Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo
           sapiens GN=PAFAH1B2 PE=1 SV=1
          Length = 229

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN+LLK SL  +L++   ++ +  D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLP-KLAN---VQLLDTDGGFVHSDGAISCHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT  G  K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGGYAKICKPLHELIMQLLEETPEEKQTT 227


>sp|P68401|PA1B2_BOVIN Platelet-activating factor acetylhydrolase IB subunit beta OS=Bos
           taurus GN=PAFAH1B2 PE=1 SV=1
          Length = 229

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN+LLK SL  +L++   ++ +  D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNQLLKVSLP-KLAN---VQLLDTDGGFVHSDGAISCHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT  G  K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGGYAKICKPLHELIMQLLEETPEEKQTT 227


>sp|Q5ZMS2|PA1B2_CHICK Platelet-activating factor acetylhydrolase IB subunit beta
           OS=Gallus gallus GN=PAFAH1B2 PE=2 SV=1
          Length = 229

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 5   LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDF 64
           LLPRG   NPL +K   VN LLK SL  +L +   L+    D   + SD  IS  D FDF
Sbjct: 139 LLPRGEKPNPLRQKNAKVNHLLKASLP-KLPNVQLLDV---DAGFVHSDGTISYHDMFDF 194

Query: 65  LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKK 97
           L LT     K+  P+H++I +  ++  E+K+  
Sbjct: 195 LHLTGGAYAKICKPLHELIMQLLEETPEEKRAA 227


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.131    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,500,449
Number of Sequences: 539616
Number of extensions: 2779443
Number of successful extensions: 256975
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3938
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 101230
Number of HSP's gapped (non-prelim): 68668
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)