Query psy9943
Match_columns 135
No_of_seqs 114 out of 192
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:38:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01820 PAF_acetylesterase_lik 99.7 1.5E-16 3.2E-21 123.4 7.1 83 1-87 132-214 (214)
2 cd01841 NnaC_like NnaC (CMP-Ne 99.5 1.3E-14 2.9E-19 107.7 5.0 78 1-83 94-174 (174)
3 cd01828 sialate_O-acetylestera 99.4 2.8E-13 6.1E-18 100.3 5.8 78 1-83 91-168 (169)
4 cd04502 SGNH_hydrolase_like_7 99.4 1E-12 2.2E-17 97.7 5.7 77 2-83 94-171 (171)
5 KOG1388|consensus 99.3 7.3E-13 1.6E-17 107.0 -0.4 89 1-93 120-208 (217)
6 cd01838 Isoamyl_acetate_hydrol 99.2 5E-12 1.1E-16 94.1 2.5 76 1-82 111-198 (199)
7 cd01836 FeeA_FeeB_like SGNH_hy 99.2 3E-11 6.6E-16 90.8 6.7 74 1-84 110-190 (191)
8 cd04501 SGNH_hydrolase_like_4 99.2 1.8E-11 3.9E-16 91.5 5.1 76 2-82 101-182 (183)
9 cd01835 SGNH_hydrolase_like_3 99.1 4.6E-11 1E-15 90.2 4.3 75 1-81 115-191 (193)
10 cd01844 SGNH_hydrolase_like_6 99.1 1.7E-10 3.7E-15 86.7 6.3 74 2-83 98-177 (177)
11 cd01829 SGNH_hydrolase_peri2 S 99.1 1.5E-10 3.2E-15 87.5 5.3 76 2-84 113-199 (200)
12 cd01827 sialate_O-acetylestera 99.1 3E-10 6.6E-15 85.0 6.3 72 2-83 113-187 (188)
13 cd01833 XynB_like SGNH_hydrola 99.1 3.8E-10 8.2E-15 82.4 6.7 73 2-82 84-156 (157)
14 cd01832 SGNH_hydrolase_like_1 99.1 3.6E-10 7.8E-15 84.2 6.3 73 1-81 109-184 (185)
15 cd01834 SGNH_hydrolase_like_2 99.1 9.6E-11 2.1E-15 86.6 3.2 75 2-81 109-190 (191)
16 PF13472 Lipase_GDSL_2: GDSL-l 99.0 1.4E-10 3.1E-15 82.9 3.2 70 1-75 105-179 (179)
17 cd01825 SGNH_hydrolase_peri1 S 99.0 5.2E-10 1.1E-14 83.2 3.8 80 2-86 101-188 (189)
18 cd01839 SGNH_arylesterase_like 98.9 9.4E-10 2E-14 84.3 4.5 57 16-85 151-207 (208)
19 cd04506 SGNH_hydrolase_YpmR_li 98.9 1.7E-09 3.6E-14 82.3 5.4 61 15-81 143-203 (204)
20 cd01821 Rhamnogalacturan_acety 98.8 1.5E-09 3.2E-14 82.6 1.4 77 2-83 112-198 (198)
21 cd01840 SGNH_hydrolase_yrhL_li 98.8 3.7E-09 8E-14 78.3 3.4 57 18-82 93-149 (150)
22 cd00229 SGNH_hydrolase SGNH_hy 98.8 1.3E-08 2.9E-13 71.3 5.9 73 2-81 111-186 (187)
23 cd01830 XynE_like SGNH_hydrola 98.8 9.3E-09 2E-13 79.0 5.1 72 2-80 124-201 (204)
24 cd01822 Lysophospholipase_L1_l 98.8 5.8E-09 1.3E-13 76.8 3.8 59 17-83 118-176 (177)
25 PRK10528 multifunctional acyl- 98.8 4.7E-09 1E-13 80.7 3.3 65 16-89 124-189 (191)
26 cd01823 SEST_like SEST_like. A 98.7 2.9E-08 6.3E-13 78.2 6.7 62 15-81 183-258 (259)
27 COG2755 TesA Lysophospholipase 98.7 2.1E-08 4.5E-13 76.9 5.0 71 12-88 143-213 (216)
28 cd01831 Endoglucanase_E_like E 98.7 4.9E-08 1.1E-12 72.8 6.4 54 17-83 115-168 (169)
29 PF00657 Lipase_GDSL: GDSL-lik 98.1 3.1E-07 6.7E-12 69.0 -1.0 66 14-79 162-234 (234)
30 PF14606 Lipase_GDSL_3: GDSL-l 98.0 1.9E-06 4.1E-11 68.0 1.6 66 13-83 111-177 (178)
31 KOG3035|consensus 97.9 1E-05 2.2E-10 66.5 3.0 49 36-85 162-210 (245)
32 cd01824 Phospholipase_B_like P 97.6 0.00015 3.2E-09 60.2 5.6 66 14-85 209-285 (288)
33 cd01847 Triacylglycerol_lipase 97.5 0.00028 6.1E-09 57.0 5.9 80 1-82 159-280 (281)
34 cd01846 fatty_acyltransferase_ 97.4 0.00034 7.3E-09 55.5 6.1 80 2-81 150-269 (270)
35 PRK15381 pathogenicity island 97.4 0.00019 4.2E-09 62.8 4.5 85 1-85 279-403 (408)
36 COG2845 Uncharacterized protei 97.3 0.0005 1.1E-08 59.3 5.3 72 14-90 241-324 (354)
37 cd01837 SGNH_plant_lipase_like 97.2 0.00057 1.2E-08 56.1 4.8 79 2-80 183-312 (315)
38 PLN03156 GDSL esterase/lipase; 97.0 0.0019 4.2E-08 54.9 6.2 84 2-85 214-348 (351)
39 cd01826 acyloxyacyl_hydrolase_ 96.3 0.0051 1.1E-07 52.4 4.3 64 13-81 230-304 (305)
40 cd01842 SGNH_hydrolase_like_5 94.9 0.018 4E-07 46.0 2.4 61 14-83 122-182 (183)
41 PF13839 PC-Esterase: GDSL/SGN 94.6 0.12 2.7E-06 40.1 6.4 67 14-84 186-262 (263)
42 PF04914 DltD_C: DltD C-termin 93.6 0.18 4E-06 37.9 5.3 72 2-84 53-128 (130)
43 PF04311 DUF459: Protein of un 92.5 0.052 1.1E-06 46.6 1.0 66 17-89 166-243 (327)
44 PF07611 DUF1574: Protein of u 91.5 0.31 6.7E-06 42.2 4.6 52 20-81 290-341 (345)
45 COG3240 Phospholipase/lecithin 87.5 2.8 6.1E-05 36.9 7.4 77 4-83 220-333 (370)
46 PF03629 DUF303: Domain of unk 62.2 27 0.00059 27.7 5.9 49 17-82 203-251 (255)
47 PF02229 PC4: Transcriptional 55.6 1.2 2.6E-05 28.7 -2.4 42 36-79 15-56 (56)
48 PF08885 GSCFA: GSCFA family; 54.4 28 0.0006 28.8 4.8 39 36-77 209-249 (251)
49 KOG2712|consensus 52.6 24 0.00052 26.2 3.7 44 36-82 55-98 (108)
50 COG2087 CobU Adenosyl cobinami 46.2 21 0.00045 28.5 2.8 29 3-31 132-160 (175)
51 PF12357 PLD_C: Phospholipase 46.1 30 0.00064 24.0 3.2 43 17-63 12-64 (74)
52 PF06375 BLVR: Bovine leukaemi 41.5 5 0.00011 31.3 -1.4 11 40-50 48-58 (154)
53 PF14903 WG_beta_rep: WG conta 40.5 5.2 0.00011 22.0 -1.1 28 48-75 2-29 (35)
54 TIGR03450 mycothiol_INO1 inosi 40.2 20 0.00043 31.5 2.0 74 1-88 126-201 (351)
55 PF07818 HCNGP: HCNGP-like pro 38.5 96 0.0021 22.0 5.0 29 40-73 50-78 (96)
56 cd03365 TOPRIM_TopoIIA TOPRIM_ 37.8 32 0.00069 25.8 2.5 12 2-13 26-38 (120)
57 KOG3967|consensus 37.6 24 0.00052 29.8 2.0 41 49-89 20-68 (297)
58 PF10673 DUF2487: Protein of u 37.1 1.5E+02 0.0033 22.7 6.2 65 20-88 71-136 (142)
59 PF10921 DUF2710: Protein of u 36.4 1.5E+02 0.0032 21.9 5.7 50 37-92 41-98 (109)
60 KOG3965|consensus 35.1 1.2E+02 0.0027 23.8 5.5 33 14-46 33-69 (160)
61 COG3220 Uncharacterized protei 34.5 76 0.0017 27.1 4.5 55 15-81 73-127 (282)
62 PF01121 CoaE: Dephospho-CoA k 34.4 9.9 0.00022 29.5 -0.7 44 47-90 54-97 (180)
63 cd01030 TOPRIM_TopoIIA_like TO 33.9 33 0.00073 25.4 2.1 12 2-13 23-35 (115)
64 KOG3670|consensus 33.4 40 0.00088 30.1 2.8 41 44-85 311-352 (397)
65 COG0435 ECM4 Predicted glutath 32.3 69 0.0015 27.8 3.9 38 55-92 186-223 (324)
66 PF10278 Med19: Mediator of RN 32.1 18 0.00039 28.9 0.4 17 70-86 88-104 (178)
67 cd01020 TroA_b Metal binding p 31.5 1.6E+02 0.0034 23.8 5.8 24 64-87 96-119 (264)
68 PRK14732 coaE dephospho-CoA ki 31.5 18 0.00039 28.2 0.3 43 46-88 52-94 (196)
69 cd07362 HPCD_like Class III ex 30.9 76 0.0016 26.1 3.9 62 17-89 151-214 (272)
70 COG4245 TerY Uncharacterized p 30.2 69 0.0015 26.2 3.4 70 13-83 15-96 (207)
71 KOG4043|consensus 29.9 1.5E+02 0.0032 24.0 5.2 27 70-96 117-143 (214)
72 PRK00550 rpsE 30S ribosomal pr 29.6 50 0.0011 25.9 2.5 58 17-87 57-120 (168)
73 PF11512 Atu4866: Agrobacteriu 28.9 12 0.00027 26.2 -0.9 17 48-64 9-25 (78)
74 PF05750 Rubella_Capsid: Rubel 28.7 43 0.00093 27.7 2.1 31 39-69 171-201 (300)
75 COG4669 EscJ Type III secretor 28.4 73 0.0016 26.8 3.4 47 4-50 88-134 (246)
76 PRK05114 hypothetical protein; 28.0 65 0.0014 21.5 2.5 31 61-91 1-32 (59)
77 PRK14734 coaE dephospho-CoA ki 27.8 19 0.00041 28.0 -0.1 43 46-88 54-96 (200)
78 PF02784 Orn_Arg_deC_N: Pyrido 27.4 1.7E+02 0.0036 23.1 5.3 39 12-52 171-209 (251)
79 cd02955 SSP411 TRX domain, SSP 27.4 74 0.0016 23.2 3.0 42 36-82 80-121 (124)
80 COG4937 Predicted regulatory d 27.0 43 0.00092 26.4 1.7 50 18-72 4-53 (171)
81 TIGR01273 speA arginine decarb 26.9 2.3E+02 0.005 26.5 6.7 66 14-88 255-321 (624)
82 cd06830 PLPDE_III_ADC Type III 26.8 2.7E+02 0.0059 24.0 6.8 66 14-88 203-269 (409)
83 COG0325 Predicted enzyme with 26.6 72 0.0016 26.4 3.0 30 2-31 160-189 (228)
84 TIGR02298 HpaD_Fe 3,4-dihydrox 26.6 57 0.0012 27.1 2.5 61 17-89 155-219 (282)
85 PF15086 UPF0542: Uncharacteri 26.1 2.1E+02 0.0045 19.9 4.8 24 75-98 36-59 (74)
86 PF10278 Med19: Mediator of RN 26.1 30 0.00065 27.7 0.7 8 1-8 4-11 (178)
87 cd01018 ZntC Metal binding pro 25.4 3.6E+02 0.0077 21.6 7.2 23 64-86 113-135 (266)
88 PRK05990 precorrin-2 C(20)-met 25.4 1.4E+02 0.003 24.0 4.5 32 17-52 82-113 (241)
89 PF10994 DUF2817: Protein of u 25.2 72 0.0016 27.6 3.0 29 22-50 192-220 (341)
90 PRK13321 pantothenate kinase; 25.1 52 0.0011 26.5 2.0 37 44-82 82-118 (256)
91 KOG3794|consensus 24.9 1.1E+02 0.0023 27.8 3.9 16 62-77 157-172 (453)
92 PF06246 Isy1: Isy1-like splic 24.7 31 0.00067 28.8 0.6 70 14-92 72-144 (255)
93 cd01415 SAICAR_synt_PurC bacte 24.3 1.9E+02 0.004 23.7 5.1 70 15-89 146-227 (230)
94 cd01137 PsaA Metal binding pro 24.2 3E+02 0.0066 22.5 6.4 23 64-86 118-140 (287)
95 cd04468 S1_eIF5A S1_eIF5A: Euk 23.9 67 0.0015 21.8 2.0 25 39-63 5-33 (69)
96 cd06233 Peptidase_M14-like_6 P 23.5 83 0.0018 26.6 2.9 30 22-51 191-220 (283)
97 PHA00002 A DNA replication ini 23.5 2.3E+02 0.005 25.7 5.7 30 38-71 56-85 (515)
98 TIGR00331 hrcA heat shock gene 23.4 53 0.0012 28.0 1.8 31 50-80 47-77 (337)
99 PF12886 TORC_C: Transducer of 23.4 64 0.0014 22.6 1.9 45 33-78 22-66 (77)
100 TIGR02654 circ_KaiB circadian 23.2 1.1E+02 0.0023 21.7 3.0 42 1-47 4-45 (87)
101 cd03366 TOPRIM_TopoIIA_GyrB TO 22.9 51 0.0011 24.5 1.4 12 2-13 23-35 (114)
102 PF01259 SAICAR_synt: SAICAR s 22.4 96 0.0021 25.5 3.1 48 14-66 154-205 (248)
103 PRK05800 cobU adenosylcobinami 22.2 82 0.0018 24.0 2.5 29 3-31 128-156 (170)
104 cd06828 PLPDE_III_DapDC Type I 22.1 3.2E+02 0.0069 22.6 6.2 61 12-86 183-243 (373)
105 PRK09301 circadian clock prote 21.7 1.2E+02 0.0026 22.2 3.1 42 1-47 7-48 (103)
106 cd03748 Ntn_PGA Penicillin G a 21.6 56 0.0012 29.5 1.6 23 38-60 430-456 (488)
107 PF07622 DUF1583: Protein of u 21.4 68 0.0015 28.7 2.1 43 34-77 172-222 (399)
108 TIGR00013 taut 4-oxalocrotonat 21.1 1.3E+02 0.0027 18.5 2.8 28 4-31 6-33 (63)
109 PF15454 LAMTOR: Late endosoma 21.0 1.7E+02 0.0036 19.7 3.6 19 20-47 39-57 (76)
110 PRK05354 arginine decarboxylas 20.9 3.3E+02 0.0072 25.6 6.6 37 15-55 263-300 (634)
111 KOG1611|consensus 20.8 1.9E+02 0.0041 24.4 4.5 48 14-63 170-218 (249)
112 CHL00138 rps5 ribosomal protei 20.6 74 0.0016 24.4 1.9 59 17-87 68-132 (143)
113 PF15027 DUF4525: Domain of un 20.4 1.8E+02 0.0038 22.4 3.9 59 7-89 35-94 (138)
114 PRK11037 hypothetical protein; 20.4 1.8E+02 0.0039 20.6 3.6 39 16-55 11-56 (83)
115 cd01700 PolY_Pol_V_umuC umuC s 20.1 2.2E+02 0.0047 23.7 4.8 52 14-83 74-125 (344)
No 1
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.66 E-value=1.5e-16 Score=123.38 Aligned_cols=83 Identities=35% Similarity=0.480 Sum_probs=75.2
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
+|++++|++..+++++..+.++|+.|.+.+. ...+|.|||+++.|.+.+|.+.++++.||||||++||+.|++.|.
T Consensus 132 il~~~~p~~~~~~~~~~~~~~~n~~l~~~~~----~~~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~ 207 (214)
T cd01820 132 LLLGLLPRGQNPNPLRERNAQVNRLLAVRYD----GLPNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALH 207 (214)
T ss_pred EEEeccCCCCCchhHHHHHHHHHHHHHHHhc----CCCCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHH
Confidence 4678999988777888999999999987765 467999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy9943 81 DIIEKAK 87 (135)
Q Consensus 81 ~~l~qLL 87 (135)
+.|.++|
T Consensus 208 ~~l~~~~ 214 (214)
T cd01820 208 PTLARLL 214 (214)
T ss_pred HHHHhhC
Confidence 9998875
No 2
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.52 E-value=1.3e-14 Score=107.67 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=67.4
Q ss_pred CcccccCCCCCC---ChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhh
Q psy9943 1 MSQELLPRGRNR---NPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFG 77 (135)
Q Consensus 1 ~LlslLPrg~~p---n~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~ 77 (135)
++++++|+...+ ...+..+.++|+.|++++. ..+|.|||+++.|.+++|.+...++.||+|||++||+.||+
T Consensus 94 i~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~-----~~~~~~id~~~~~~~~~~~~~~~~~~DglH~n~~Gy~~~a~ 168 (174)
T cd01841 94 YLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAP-----ELGVTFIDLNDVLVDEFGNLKKEYTTDGLHFNPKGYQKLLE 168 (174)
T ss_pred EEEeeCCcCcccccccCCHHHHHHHHHHHHHHHH-----HCCCEEEEcHHHHcCCCCCccccccCCCcccCHHHHHHHHH
Confidence 367888987653 3557889999999999887 55799999999999999998889999999999999999999
Q ss_pred hHHHHH
Q psy9943 78 PIHDII 83 (135)
Q Consensus 78 ~l~~~l 83 (135)
.|.++|
T Consensus 169 ~l~~~~ 174 (174)
T cd01841 169 ILEEYL 174 (174)
T ss_pred HHHhhC
Confidence 998764
No 3
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.42 E-value=2.8e-13 Score=100.30 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=67.0
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
++++++|.+.........+.++|+.|++++. ..+|.|||+++.|.+.+|.....++.||+|||++||+.||+.|.
T Consensus 91 i~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~-----~~~~~~id~~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~ 165 (169)
T cd01828 91 VVQSILPVGELKSIPNEQIEELNRQLAQLAQ-----QEGVTFLDLWAVFTNADGDLKNEFTTDGLHLNAKGYAVWAAALQ 165 (169)
T ss_pred EEEecCCcCccCcCCHHHHHHHHHHHHHHHH-----HCCCEEEechhhhcCCCCCcchhhccCccccCHHHHHHHHHHHH
Confidence 3567888874444556788999999999887 68999999999999998877778889999999999999999999
Q ss_pred HHH
Q psy9943 81 DII 83 (135)
Q Consensus 81 ~~l 83 (135)
++|
T Consensus 166 ~~~ 168 (169)
T cd01828 166 PYL 168 (169)
T ss_pred Hhh
Confidence 876
No 4
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.36 E-value=1e-12 Score=97.66 Aligned_cols=77 Identities=23% Similarity=0.166 Sum_probs=61.5
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCC-CCCcCCCChhhhhhhhhhHH
Q psy9943 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGD-FFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 2 LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~-m~DgLHLt~~GY~k~a~~l~ 80 (135)
++++.|.... ......+.++|+.+++++. ...+|.|||+++.|.+++|...+++ +.||+|||+.||+.|++.|.
T Consensus 94 l~~~~p~~~~-~~~~~~~~~~n~~~~~~a~----~~~~v~~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l~ 168 (171)
T cd04502 94 IISIKPSPAR-WALRPKIRRFNALLKELAE----TRPNLTYIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVIK 168 (171)
T ss_pred EEEecCCCcc-hhhHHHHHHHHHHHHHHHh----cCCCeEEEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHHH
Confidence 5566665432 2345678899999999876 3578999999999999998876555 58999999999999999987
Q ss_pred HHH
Q psy9943 81 DII 83 (135)
Q Consensus 81 ~~l 83 (135)
+.|
T Consensus 169 ~~~ 171 (171)
T cd04502 169 PAL 171 (171)
T ss_pred hhC
Confidence 653
No 5
>KOG1388|consensus
Probab=99.25 E-value=7.3e-13 Score=106.99 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=80.6
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
+|.+++|+++.||++|.....+|....-+++ ....+.+++..+.|+.+||.|+...|+|++|+|.+||..++.+++
T Consensus 120 vvgd~c~~~e~~N~~r~~~~kgtcyy~l~id----~~ftf~l~~~d~~fv~sd~~i~~~d~fd~~~~~~~g~~~ic~~~~ 195 (217)
T KOG1388|consen 120 VVGDLCPKCEVPNRYRGKPLKGTCYYELLID----GQFTFHLLQEDDGFVTSDNFISTHDMFDYLHLTNAGNTFICNPLW 195 (217)
T ss_pred EecccCcccccccccccCccccceeeeeecc----cccccceeecCCCceeeccccccCCcccchhhccCCCceecchHH
Confidence 4778999999999999999999966554444 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHH
Q psy9943 81 DIIEKAKKKKKEK 93 (135)
Q Consensus 81 ~~l~qLLee~eeK 93 (135)
+++++++++.+++
T Consensus 196 ~l~~~~l~q~~~e 208 (217)
T KOG1388|consen 196 ELYFSLLTQAPPE 208 (217)
T ss_pred HHHhhhhhcCCcc
Confidence 9999999877664
No 6
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=99.22 E-value=5e-12 Score=94.09 Aligned_cols=76 Identities=11% Similarity=-0.009 Sum_probs=60.5
Q ss_pred CcccccCCCCCC------------ChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCC
Q psy9943 1 MSQELLPRGRNR------------NPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLT 68 (135)
Q Consensus 1 ~LlslLPrg~~p------------n~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt 68 (135)
+|+++.|+++.. ......+.+.|+.+.+++. ..+|.|+|+++.|.+.++ ....++.||+|||
T Consensus 111 i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~~~~iD~~~~~~~~~~-~~~~~~~Dg~Hpn 184 (199)
T cd01838 111 ILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAE-----ELGVPVIDLWTAMQEEAG-WLESLLTDGLHFS 184 (199)
T ss_pred EEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHH-----HhCCcEEEHHHHHHhccC-chhhhcCCCCCcC
Confidence 356777766531 2345677889999998877 568999999999988766 5567889999999
Q ss_pred hhhhhhhhhhHHHH
Q psy9943 69 ESGSRKVFGPIHDI 82 (135)
Q Consensus 69 ~~GY~k~a~~l~~~ 82 (135)
++||+.||++|.+.
T Consensus 185 ~~G~~~~a~~l~~~ 198 (199)
T cd01838 185 SKGYELLFEEIVKV 198 (199)
T ss_pred HhHHHHHHHHHHhh
Confidence 99999999998764
No 7
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.21 E-value=3e-11 Score=90.82 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=58.0
Q ss_pred CcccccCCCCCC---Ch----hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhh
Q psy9943 1 MSQELLPRGRNR---NP----LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSR 73 (135)
Q Consensus 1 ~LlslLPrg~~p---n~----~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~ 73 (135)
+++++.|.+..+ ++ ..+.+.++|+.|++++. ..++|+|+|++..|. ...++.||+|||++||+
T Consensus 110 iv~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~----~~~~~~~id~~~~~~------~~~~~~DglHpn~~Gy~ 179 (191)
T cd01836 110 VVTAVPPLGRFPALPQPLRWLLGRRARLLNRALERLAS----EAPRVTLLPATGPLF------PALFASDGFHPSAAGYA 179 (191)
T ss_pred EEECCCCcccCCCCcHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEEecCCccc------hhhccCCCCCCChHHHH
Confidence 356778877643 33 34566789999998887 356999999998875 44567899999999999
Q ss_pred hhhhhHHHHHH
Q psy9943 74 KVFGPIHDIIE 84 (135)
Q Consensus 74 k~a~~l~~~l~ 84 (135)
.|++.|.+.|.
T Consensus 180 ~~a~~l~~~i~ 190 (191)
T cd01836 180 VWAEALAPAIA 190 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 8
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.21 E-value=1.8e-11 Score=91.50 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=62.0
Q ss_pred cccccCCCCCCC-----hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCC-ccCCCCCCCcCCCChhhhhhh
Q psy9943 2 SQELLPRGRNRN-----PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDD-RISAGDFFDFLRLTESGSRKV 75 (135)
Q Consensus 2 LlslLPrg~~pn-----~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG-~Ls~~~m~DgLHLt~~GY~k~ 75 (135)
|++..|....+. .....+.++|+.+.+++. ..+|.|+|+++.|.+.++ .....++.||+|||++||+.|
T Consensus 101 l~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~-----~~~v~~vd~~~~~~~~~~~~~~~~~~~DgvHp~~~Gy~~~ 175 (183)
T cd04501 101 LASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYAR-----ENGLLFLDFYSPLLDERNVGLKPGLLTDGLHPSREGYRVM 175 (183)
T ss_pred EEeCCCcCccccchhhcchHHHHHHHHHHHHHHHH-----HcCCCEEechhhhhccccccccccccCCCCCCCHHHHHHH
Confidence 556677765432 235788899999999987 568999999999999876 567788899999999999999
Q ss_pred hhhHHHH
Q psy9943 76 FGPIHDI 82 (135)
Q Consensus 76 a~~l~~~ 82 (135)
++.+...
T Consensus 176 a~~i~~~ 182 (183)
T cd04501 176 APLAEKA 182 (183)
T ss_pred HHHHHHh
Confidence 9988754
No 9
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.13 E-value=4.6e-11 Score=90.17 Aligned_cols=75 Identities=9% Similarity=0.005 Sum_probs=59.2
Q ss_pred CcccccCCCCCCCh-hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCC-CCcCCCChhhhhhhhhh
Q psy9943 1 MSQELLPRGRNRNP-LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDF-FDFLRLTESGSRKVFGP 78 (135)
Q Consensus 1 ~LlslLPrg~~pn~-~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m-~DgLHLt~~GY~k~a~~ 78 (135)
+|++++|+.+...+ ....+.++|+.+.+++. ..+|.|||+++.|.+.++ ...+++ .||+|||++||+.||+.
T Consensus 115 i~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~-----~~~~~~vd~~~~~~~~~~-~~~~~~~~Dg~Hpn~~G~~~~a~~ 188 (193)
T cd01835 115 LVVGPTPVDEAKMPYSNRRIARLETAFAEVCL-----RRDVPFLDTFTPLLNHPQ-WRRELAATDGIHPNAAGYGWLAWL 188 (193)
T ss_pred EEEeCCCccccccchhhHHHHHHHHHHHHHHH-----HcCCCeEeCccchhcCcH-HHHhhhccCCCCCCHHHHHHHHHH
Confidence 36788888765432 36678899999999887 568999999999998743 334455 49999999999999998
Q ss_pred HHH
Q psy9943 79 IHD 81 (135)
Q Consensus 79 l~~ 81 (135)
|..
T Consensus 189 ~~~ 191 (193)
T cd01835 189 VLH 191 (193)
T ss_pred Hhc
Confidence 754
No 10
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.10 E-value=1.7e-10 Score=86.71 Aligned_cols=74 Identities=8% Similarity=-0.020 Sum_probs=50.6
Q ss_pred cccccCCCCC---CC---hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhh
Q psy9943 2 SQELLPRGRN---RN---PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKV 75 (135)
Q Consensus 2 LlslLPrg~~---pn---~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~ 75 (135)
|++.+|.... +. ...+.+..+|+.++.+.. +..++++|||..+.| +.+ ..++.||+|||++||+.|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~~-~~~----~~~~~DglHpn~~Gy~~~ 169 (177)
T cd01844 98 LVSPRYCPDAELTPGRGKLTLAVRRALREAFEKLRA---DGVPNLYYLDGEELL-GPD----GEALVDGIHPTDLGHMRY 169 (177)
T ss_pred EEecCCCCccccCcchhHHHHHHHHHHHHHHHHHHh---cCCCCEEEecchhhc-CCC----CCCCCCCCCCCHHHHHHH
Confidence 5676776432 11 134455666666665433 246789999988544 443 468899999999999999
Q ss_pred hhhHHHHH
Q psy9943 76 FGPIHDII 83 (135)
Q Consensus 76 a~~l~~~l 83 (135)
++++.+.|
T Consensus 170 a~~l~~~~ 177 (177)
T cd01844 170 ADRFEPVL 177 (177)
T ss_pred HHHHhhcC
Confidence 99988753
No 11
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.09 E-value=1.5e-10 Score=87.48 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=59.6
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccC-----------CCCCCCcCCCChh
Q psy9943 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRIS-----------AGDFFDFLRLTES 70 (135)
Q Consensus 2 LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls-----------~~~m~DgLHLt~~ 70 (135)
|+++.|.++. .....+.++|+.+++.+. ..++.|+|+++.|.+++|... ..++.||+|||++
T Consensus 113 li~~pp~~~~--~~~~~~~~~~~~~~~~a~-----~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~ 185 (200)
T cd01829 113 WVGLPAMRSP--KLSADMVYLNSLYREEVA-----KAGGEFVDVWDGFVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAA 185 (200)
T ss_pred EEcCCCCCCh--hHhHHHHHHHHHHHHHHH-----HcCCEEEEhhHhhcCCCCCeeeeccCCCCcEEEeecCCCceECHH
Confidence 5666676532 345678889999998877 457999999999999887642 1235799999999
Q ss_pred hhhhhhhhHHHHHH
Q psy9943 71 GSRKVFGPIHDIIE 84 (135)
Q Consensus 71 GY~k~a~~l~~~l~ 84 (135)
||+.|++.+.+.|.
T Consensus 186 G~~~~a~~i~~~l~ 199 (200)
T cd01829 186 GGRKLAFYVEKLIR 199 (200)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987763
No 12
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.07 E-value=3e-10 Score=84.99 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=55.6
Q ss_pred cccccCCCCCCC---hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhh
Q psy9943 2 SQELLPRGRNRN---PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGP 78 (135)
Q Consensus 2 LlslLPrg~~pn---~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~ 78 (135)
|++.+|...... ..+....++|+.+.+++. ..+|.|||+++.|.+.. +++.||+|||++||+.+|+.
T Consensus 113 l~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~~~~vD~~~~~~~~~-----~~~~Dg~Hpn~~G~~~~A~~ 182 (188)
T cd01827 113 ICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAK-----KLNLKLIDLHTPLKGKP-----ELVPDWVHPNEKGAYILAKV 182 (188)
T ss_pred EEeCCcccccCCCccchHHHHHHHHHHHHHHHH-----HcCCcEEEccccccCCc-----cccCCCCCcCHHHHHHHHHH
Confidence 456667654321 224556788999998887 67899999998886543 57899999999999999999
Q ss_pred HHHHH
Q psy9943 79 IHDII 83 (135)
Q Consensus 79 l~~~l 83 (135)
|...|
T Consensus 183 i~~~i 187 (188)
T cd01827 183 VYKAI 187 (188)
T ss_pred HHHHh
Confidence 98765
No 13
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.07 E-value=3.8e-10 Score=82.42 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHH
Q psy9943 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 2 LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~ 81 (135)
+++++|+...+ ......+.|+.+++++.+.-+...+|.|+|+++.|.+ ..++.||+|||++||+.|++.+.+
T Consensus 84 ~~~~~p~~~~~--~~~~~~~~n~~l~~~~~~~~~~~~~v~~vd~~~~~~~------~~~~~Dg~Hpn~~Gy~~~a~~~~~ 155 (157)
T cd01833 84 VATLIPTTDAS--GNARIAEYNAAIPGVVADLRTAGSPVVLVDMSTGYTT------ADDLYDGLHPNDQGYKKMADAWYE 155 (157)
T ss_pred EEeCCCCCCcc--hhHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCC------cccccCCCCCchHHHHHHHHHHHh
Confidence 45666765544 2566778899999888743222368999999998865 457899999999999999999876
Q ss_pred H
Q psy9943 82 I 82 (135)
Q Consensus 82 ~ 82 (135)
.
T Consensus 156 ~ 156 (157)
T cd01833 156 A 156 (157)
T ss_pred h
Confidence 4
No 14
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.06 E-value=3.6e-10 Score=84.20 Aligned_cols=73 Identities=10% Similarity=-0.026 Sum_probs=55.6
Q ss_pred CcccccCC-CCCCC--hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhh
Q psy9943 1 MSQELLPR-GRNRN--PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFG 77 (135)
Q Consensus 1 ~LlslLPr-g~~pn--~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~ 77 (135)
+|+++.|. +..+. ..+..+.++|+.|++++. ..+|.|+|+++.+...+ ...++.||+|||++||+.||+
T Consensus 109 il~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~-----~~~v~~vd~~~~~~~~~---~~~~~~DgiHpn~~G~~~~A~ 180 (185)
T cd01832 109 VVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAA-----RYGAVHVDLWEHPEFAD---PRLWASDRLHPSAAGHARLAA 180 (185)
T ss_pred EEecCCCccccchhHHHHHHHHHHHHHHHHHHHH-----HcCCEEEecccCcccCC---ccccccCCCCCChhHHHHHHH
Confidence 46788887 43332 345568999999999887 56899999998876322 234568999999999999999
Q ss_pred hHHH
Q psy9943 78 PIHD 81 (135)
Q Consensus 78 ~l~~ 81 (135)
.|.+
T Consensus 181 ~i~~ 184 (185)
T cd01832 181 LVLA 184 (185)
T ss_pred HHhh
Confidence 8864
No 15
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.06 E-value=9.6e-11 Score=86.64 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=58.9
Q ss_pred cccccCCCCCCC------hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCcc-CCCCCCCcCCCChhhhhh
Q psy9943 2 SQELLPRGRNRN------PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRI-SAGDFFDFLRLTESGSRK 74 (135)
Q Consensus 2 LlslLPrg~~pn------~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~L-s~~~m~DgLHLt~~GY~k 74 (135)
|++.+|....+. ..+..+.++|+.+++++. ..+|.|||+++.|.+.++.. ...++.||+|||++||+.
T Consensus 109 ~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~-----~~~~~~iD~~~~~~~~~~~~~~~~~~~D~~Hpn~~G~~~ 183 (191)
T cd01834 109 LVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAA-----ENGVAFVDLFTPMKEAFQKAGEAVLTVDGVHPNEAGHRA 183 (191)
T ss_pred EECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHH-----HcCCeEEecHHHHHHHHHhCCCccccCCCCCCCHHHHHH
Confidence 556666654322 346778889999998887 56899999999998776554 667789999999999999
Q ss_pred hhhhHHH
Q psy9943 75 VFGPIHD 81 (135)
Q Consensus 75 ~a~~l~~ 81 (135)
|++.+..
T Consensus 184 ~a~~~~~ 190 (191)
T cd01834 184 LARLWLE 190 (191)
T ss_pred HHHHHHh
Confidence 9998753
No 16
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.04 E-value=1.4e-10 Score=82.86 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CcccccCCCCCCC-----hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhh
Q psy9943 1 MSQELLPRGRNRN-----PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKV 75 (135)
Q Consensus 1 ~LlslLPrg~~pn-----~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~ 75 (135)
+|+++.|+++.+. .....+.++|+.|++++. ..++.|+|+...|.+.++.....++.||+|||++||+.|
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~~~~id~~~~~~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 105 ILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAK-----KYGVPFIDLFDAFDDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp EEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHH-----HCTEEEEEHHHHHBTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred EEecCCCcccccccccchhhhhhHHHHHHHHHHHHH-----HcCCEEEECHHHHccccccchhhcCCCCCCcCHHHhCcC
Confidence 4677888887764 468889999999999887 449999999999998888888889999999999999986
No 17
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.96 E-value=5.2e-10 Score=83.18 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=59.3
Q ss_pred cccccCCCCCCC----hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCcc---CCC-CCCCcCCCChhhhh
Q psy9943 2 SQELLPRGRNRN----PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRI---SAG-DFFDFLRLTESGSR 73 (135)
Q Consensus 2 LlslLPrg~~pn----~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~L---s~~-~m~DgLHLt~~GY~ 73 (135)
|++..|+...++ .....++++|+.+++++. ..+|.|+|+++.+.+..+.. ... ++.||+|||++||+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~v~~vd~~~~~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~ 175 (189)
T cd01825 101 LVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAK-----EEGIAFWDLYAAMGGEGGIWQWAEPGLARKDYVHLTPRGYE 175 (189)
T ss_pred EEcCCchhccCCCCCcccCCcHHHHHHHHHHHHH-----HcCCeEEeHHHHhCCcchhhHhhcccccCCCcccCCcchHH
Confidence 466666644432 234567889999998887 56799999998887653332 223 46899999999999
Q ss_pred hhhhhHHHHHHHH
Q psy9943 74 KVFGPIHDIIEKA 86 (135)
Q Consensus 74 k~a~~l~~~l~qL 86 (135)
.|++.+.+.|.+.
T Consensus 176 ~~a~~i~~~i~~~ 188 (189)
T cd01825 176 RLANLLYEALLKA 188 (189)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 18
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.94 E-value=9.4e-10 Score=84.26 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHH
Q psy9943 16 WEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 16 r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~q 85 (135)
...+.+.|+.+++++. ..+|.|+|++..+. .++.||+|||++||+.||+.|.+.|.+
T Consensus 151 ~~~~~~~~~~~~~~a~-----~~~~~~iD~~~~~~--------~~~~DGvH~~~~G~~~~a~~l~~~i~~ 207 (208)
T cd01839 151 EEKSKGLADAYRALAE-----ELGCHFFDAGSVGS--------TSPVDGVHLDADQHAALGQALASVIRA 207 (208)
T ss_pred HHHHHHHHHHHHHHHH-----HhCCCEEcHHHHhc--------cCCCCccCcCHHHHHHHHHHHHHHHhh
Confidence 4667889999998887 67899999976553 267899999999999999999988764
No 19
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=98.92 E-value=1.7e-09 Score=82.29 Aligned_cols=61 Identities=8% Similarity=-0.110 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHH
Q psy9943 15 LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 15 ~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~ 81 (135)
....+.+.|+.+++.+. ...+|.|||+++.|.+.+ ....++.||+|||+.||+.||+.|++
T Consensus 143 ~~~~~~~~n~~~~~~a~----~~~~v~~vd~~~~~~~~~--~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 143 INDIVNDWNEASQKLAS----QYKNAYFVPIFDLFSDGQ--NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCeEEEehHHhhcCCc--ccccccccCcCCCHHHHHHHHHHHHh
Confidence 56778889999998876 456699999999888764 34456689999999999999998864
No 20
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=98.80 E-value=1.5e-09 Score=82.61 Aligned_cols=77 Identities=8% Similarity=0.046 Sum_probs=56.8
Q ss_pred cccccCCCCCC-C-hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcC------CCCccC--CCCCCCcCCCChhh
Q psy9943 2 SQELLPRGRNR-N-PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLV------SDDRIS--AGDFFDFLRLTESG 71 (135)
Q Consensus 2 LlslLPrg~~p-n-~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~------~dG~Ls--~~~m~DgLHLt~~G 71 (135)
|++..|..... . .....+.+.|+.+++++. ..+|.|+|++..|.+ .++..+ ..++.||+|||++|
T Consensus 112 l~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~~~~vD~~~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G 186 (198)
T cd01821 112 LVTPVTRRTFDEGGKVEDTLGDYPAAMRELAA-----EEGVPLIDLNAASRALYEAIGPEKSKKYFPEGPGDNTHFSEKG 186 (198)
T ss_pred EECCccccccCCCCcccccchhHHHHHHHHHH-----HhCCCEEecHHHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHH
Confidence 45555654332 2 245568889999999987 668999999987753 234444 46789999999999
Q ss_pred hhhhhhhHHHHH
Q psy9943 72 SRKVFGPIHDII 83 (135)
Q Consensus 72 Y~k~a~~l~~~l 83 (135)
|+.+|+.|.+.|
T Consensus 187 ~~~~a~~i~~~~ 198 (198)
T cd01821 187 ADVVARLVAEEL 198 (198)
T ss_pred HHHHHHHHHhhC
Confidence 999999987653
No 21
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=98.80 E-value=3.7e-09 Score=78.28 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 18 KFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 18 ~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
...++|+.+.+++. ..++|+|+|.++.+.+. ..-+..||+|||++||+.|++.|.+.
T Consensus 93 ~~~~~n~~~~~~a~----~~~~v~~id~~~~~~~~----~~~~~~DgiHpn~~G~~~~a~~i~~a 149 (150)
T cd01840 93 WEPDVNAYLLDAAK----KYKNVTIIDWYKAAKGH----PDWFYGDGVHPNPAGAKLYAALIAKA 149 (150)
T ss_pred hHHHHHHHHHHHHH----HCCCcEEecHHHHhccc----chhhcCCCCCCChhhHHHHHHHHHHh
Confidence 46889999999887 57799999998876542 22234799999999999999998764
No 22
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=98.79 E-value=1.3e-08 Score=71.32 Aligned_cols=73 Identities=8% Similarity=-0.040 Sum_probs=56.4
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCC---CeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhh
Q psy9943 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRS---RLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGP 78 (135)
Q Consensus 2 LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~---~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~ 78 (135)
++++.|++..+..........|+.+.+++. ..+ .+.|+|++..+.+. ....++.||+|||+.||+.||+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~---~~~~~~~Dg~H~~~~G~~~~a~~ 183 (187)
T cd00229 111 LITPPPPPPREGLLGRALPRYNEAIKAVAA----ENPAPSGVDLVDLAALLGDE---DKSLYSPDGIHPNPAGHKLIAEA 183 (187)
T ss_pred EEeCCCCCCCchhhHHHHHHHHHHHHHHHH----HcCCCcceEEEEhhhhhCCC---ccccccCCCCCCchhhHHHHHHH
Confidence 456666666654455667788999998887 233 59999999988876 44567799999999999999998
Q ss_pred HHH
Q psy9943 79 IHD 81 (135)
Q Consensus 79 l~~ 81 (135)
|..
T Consensus 184 i~~ 186 (187)
T cd00229 184 LAS 186 (187)
T ss_pred Hhc
Confidence 864
No 23
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.78 E-value=9.3e-09 Score=79.00 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=48.4
Q ss_pred cccccCCCCCC--Chh-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCC--ccCCCCC-CCcCCCChhhhhhh
Q psy9943 2 SQELLPRGRNR--NPL-WEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDD--RISAGDF-FDFLRLTESGSRKV 75 (135)
Q Consensus 2 LlslLPrg~~p--n~~-r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG--~Ls~~~m-~DgLHLt~~GY~k~ 75 (135)
++++.|....+ .+. ...+.++|+.+.+... ...|||+++.|.+.++ .+.++++ .||+|||++||+.|
T Consensus 124 l~t~~P~~~~~~~~~~~~~~~~~~n~~~~~~~~-------~~~~vD~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~ 196 (204)
T cd01830 124 GATITPFEGSGYYTPAREATRQAVNEWIRTSGA-------FDAVVDFDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAM 196 (204)
T ss_pred EecCCCCCCCCCCCHHHHHHHHHHHHHHHccCC-------CCeeeEhHHhhcCCCCchhcccccCCCCCCCCCHHHHHHH
Confidence 56677875433 222 2334556666654221 1348999999988753 5556664 79999999999999
Q ss_pred hhhHH
Q psy9943 76 FGPIH 80 (135)
Q Consensus 76 a~~l~ 80 (135)
|+.+.
T Consensus 197 A~~i~ 201 (204)
T cd01830 197 ADAVD 201 (204)
T ss_pred HHhcC
Confidence 99874
No 24
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=98.78 E-value=5.8e-09 Score=76.79 Aligned_cols=59 Identities=3% Similarity=-0.053 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
..+.++|+.+++++. ..++.|+|.+...+.. -..-++.||+|||++||+.||+.|.+.|
T Consensus 118 ~~~~~~~~~~~~~a~-----~~~~~~~d~~~~~~~~---~~~~~~~DgvHpn~~G~~~~a~~i~~~i 176 (177)
T cd01822 118 RYTRRFAAIYPELAE-----EYGVPLVPFFLEGVAG---DPELMQSDGIHPNAEGQPIIAENVWPAL 176 (177)
T ss_pred HHHHHHHHHHHHHHH-----HcCCcEechHHhhhhh---ChhhhCCCCCCcCHHHHHHHHHHHHHhh
Confidence 457889999998887 5678999974221111 1122679999999999999999998765
No 25
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=98.77 E-value=4.7e-09 Score=80.68 Aligned_cols=65 Identities=3% Similarity=-0.064 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCC-CCCCcCCCChhhhhhhhhhHHHHHHHHHhh
Q psy9943 16 WEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAG-DFFDFLRLTESGSRKVFGPIHDIIEKAKKK 89 (135)
Q Consensus 16 r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~-~m~DgLHLt~~GY~k~a~~l~~~l~qLLee 89 (135)
+....++|+.+++++. ..+|.|+|.+..+. ...++ ++.||+|||++||+.||+.|.+.|..+++.
T Consensus 124 ~~~~~~~~~~~~~~a~-----~~~v~~id~~~~~~----~~~~~~~~~DGiHpn~~Gy~~~A~~i~~~l~~~~~~ 189 (191)
T PRK10528 124 RRYNEAFSAIYPKLAK-----EFDIPLLPFFMEEV----YLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNH 189 (191)
T ss_pred HHHHHHHHHHHHHHHH-----HhCCCccHHHHHhh----ccCHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3456678888988877 55799999763322 23444 457999999999999999999999888764
No 26
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=98.73 E-value=2.9e-08 Score=78.19 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCC---eEEEeCCCCCcCC-----------CCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 15 LWEKFFAVNKLLKDSLSDRLSDRSR---LEFISHDISDLVS-----------DDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 15 ~r~~i~~iN~~L~~~~~~~ls~~~~---V~fiDi~~~fl~~-----------dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
.++.+.++|+.|.+++. ..+ |.|||+++.|..- .+.+...++.||+|||++||+.+|++|.
T Consensus 183 ~~~~~~~ln~~i~~~a~-----~~~~~~v~fvD~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~~A~~i~ 257 (259)
T cd01823 183 LNQLVDKLNALIRRAAA-----DAGDYKVRFVDTDAPFAGHRACSPDPWSRSVLDLLPTRQGKPFHPNAAGHRAIADLIV 257 (259)
T ss_pred HHHHHHHHHHHHHHHHH-----HhCCceEEEEECCCCcCCCccccCCCccccccCCCCCCCccCCCCCHHHHHHHHHHHh
Confidence 46777889999999887 445 9999999988742 3446667789999999999999999886
Q ss_pred H
Q psy9943 81 D 81 (135)
Q Consensus 81 ~ 81 (135)
+
T Consensus 258 ~ 258 (259)
T cd01823 258 D 258 (259)
T ss_pred h
Confidence 4
No 27
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=98.70 E-value=2.1e-08 Score=76.91 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 12 RNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 12 pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
++..+..+...|+.+..+++ ...|.+.|++..+++ .+.+...++.||+|||++||+.|+++|.+.+..++.
T Consensus 143 ~~~~~~~~~~~~~~~~~la~-----~~~v~~~d~~~~~~~-~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~~l~~~~~ 213 (216)
T COG2755 143 PTYGADWFHAANEILAQLAN-----ELFVPLADLFDAGVD-GGRLPELLTEDGLHPNAKGYQALAEALAEVLAKLLK 213 (216)
T ss_pred hHHHHHHHHHHHHHHHHhhh-----hcCccchHHHhcccc-cccCcccccCCCCCcCHhhHHHHHHHHHHHHHHHhc
Confidence 34567778888888887766 466778888877777 577777777999999999999999999999887764
No 28
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=98.68 E-value=4.9e-08 Score=72.80 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
+.+..+++.+.+. ...+|.|+|.+..+ .++++.||+|||++||+.+|+.|.+.|
T Consensus 115 ~~~~~~~~~~~~~------~~~~v~~id~~~~~-------~~~~~~DgiHPn~~G~~~iA~~l~~~i 168 (169)
T cd01831 115 EEIKRVAEAFKDQ------KSKKVHYFDTPGIL-------QHNDIGCDWHPTVAGHQKIAKHLLPAI 168 (169)
T ss_pred HHHHHHHHHHHhc------CCceEEEEeccccc-------CCCCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 4445555555432 12579999987533 245679999999999999999998765
No 29
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=98.14 E-value=3.1e-07 Score=68.97 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhc---CCCCeEEEeCCCCCcCCCCccCCC----CCCCcCCCChhhhhhhhhhH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLS---DRSRLEFISHDISDLVSDDRISAG----DFFDFLRLTESGSRKVFGPI 79 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls---~~~~V~fiDi~~~fl~~dG~Ls~~----~m~DgLHLt~~GY~k~a~~l 79 (135)
.++..+...|..|.+.+...-. ...+|.|+|+++.+.+.++.-.+. ++.||+|||++||+.+|+.|
T Consensus 162 ~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 162 RLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHHHcCC
Confidence 4577888899999988831000 156899999999998875444443 78999999999999999875
No 30
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=98.03 E-value=1.9e-06 Score=68.00 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhh-cCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 13 NPLWEKFFAVNKLLKDSLSDRL-SDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 13 n~~r~~i~~iN~~L~~~~~~~l-s~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
+..+....+.|+.+++.+.+.. .+.++++||+-...| ..| ++.|.||+|||+.||..+++.+.+.|
T Consensus 111 ~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ll-g~d----~e~tvDgvHP~DlG~~~~a~~l~~~i 177 (178)
T PF14606_consen 111 NSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEELL-GDD----HEATVDGVHPNDLGMMRMADALEPVI 177 (178)
T ss_dssp -TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHCS----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchhhc-Ccc----cccccccccccccccccccccccccC
Confidence 3445556666666666554321 368999999866543 222 46799999999999999999998765
No 31
>KOG3035|consensus
Probab=97.86 E-value=1e-05 Score=66.49 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=41.3
Q ss_pred CCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHH
Q psy9943 36 DRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 36 ~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~q 85 (135)
...++.+||+.+.+.+. +--...++.||||||+.||..++++|...|.+
T Consensus 162 ~e~~l~~vdlws~~Q~~-~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~e 210 (245)
T KOG3035|consen 162 QEIGLYVVDLWSKMQES-DDWQTSCLTDGLHLSPKGNKIVFDEILKVLKE 210 (245)
T ss_pred HHhCCeeeeHHhhhhhc-ccHHHHHhccceeeccccchhhHHHHHHHHHh
Confidence 37899999997666555 66677899999999999999999999887654
No 32
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=97.56 E-value=0.00015 Score=60.24 Aligned_cols=66 Identities=9% Similarity=0.133 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCe----------EEEeCCCCCcCCCCccCCCCC-CCcCCCChhhhhhhhhhHHHH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRL----------EFISHDISDLVSDDRISAGDF-FDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V----------~fiDi~~~fl~~dG~Ls~~~m-~DgLHLt~~GY~k~a~~l~~~ 82 (135)
.+++.+.+.|+.+.+++. .+.. .|++.......++| .+.++| +||+|||+.|++.+|..|+..
T Consensus 209 ~~~~~~~~y~~~~~eia~-----~~~~~~~~f~vv~qPf~~~~~~~~~~~g-~d~~~~~~D~~Hps~~G~~~ia~~lwn~ 282 (288)
T cd01824 209 DLKKFYKEYQNEVEEIVE-----SGEFDREDFAVVVQPFFEDTSLPPLPDG-PDLSFFSPDCFHFSQRGHAIAANALWNN 282 (288)
T ss_pred HHHHHHHHHHHHHHHHHh-----cccccccCccEEeeCchhccccccccCC-CcchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 455667777888877776 3222 33333333445567 666666 899999999999999999987
Q ss_pred HHH
Q psy9943 83 IEK 85 (135)
Q Consensus 83 l~q 85 (135)
+.+
T Consensus 283 m~~ 285 (288)
T cd01824 283 LLE 285 (288)
T ss_pred Hhc
Confidence 654
No 33
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=97.47 E-value=0.00028 Score=56.99 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=52.6
Q ss_pred CcccccCCCCCCC----------hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------------CcCCC-----
Q psy9943 1 MSQELLPRGRNRN----------PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDIS------------DLVSD----- 53 (135)
Q Consensus 1 ~LlslLPrg~~pn----------~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~------------fl~~d----- 53 (135)
+|+++.|.|-.|. .+.......|+.|+..+. .|+.. ++.|+|++.. |.+..
T Consensus 159 lv~~lpplgc~P~~~~~~~~~~~~~n~~~~~~N~~L~~~l~-~l~~~-~i~~~D~~~~~~~i~~nP~~yGf~~~~~~CC~ 236 (281)
T cd01847 159 LVPNLPDVSYTPEAAGTPAAAAALASALSQTYNQTLQSGLN-QLGAN-NIIYVDTATLLKEVVANPAAYGFTNTTTPACT 236 (281)
T ss_pred EEeCCCCcccCcchhhccchhHHHHHHHHHHHHHHHHHHHH-hccCC-eEEEEEHHHHHHHHHhChHhcCccCCCccccC
Confidence 3567777777663 234455667889988876 33333 6999998733 32211
Q ss_pred -Cc--------------cCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 54 -DR--------------ISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 54 -G~--------------Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
|. -+.-++.|++|||+.+|+.+++.+...
T Consensus 237 ~~~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~~ 280 (281)
T cd01847 237 STSAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALSR 280 (281)
T ss_pred CCCccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHHh
Confidence 11 223356899999999999999877654
No 34
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=97.44 E-value=0.00034 Score=55.53 Aligned_cols=80 Identities=11% Similarity=-0.021 Sum_probs=53.3
Q ss_pred cccccCCCCCCC----------hhHHHHHHHHHHHHHHhhhhhcC--CCCeEEEeCCCCCcC------------CC----
Q psy9943 2 SQELLPRGRNRN----------PLWEKFFAVNKLLKDSLSDRLSD--RSRLEFISHDISDLV------------SD---- 53 (135)
Q Consensus 2 LlslLPrg~~pn----------~~r~~i~~iN~~L~~~~~~~ls~--~~~V~fiDi~~~fl~------------~d---- 53 (135)
|+++.|.+..|- .+...++..|+.|++.+...-+. ..+|.|+|++..|.+ ..
T Consensus 150 v~~~p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~ 229 (270)
T cd01846 150 VLNLPDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCL 229 (270)
T ss_pred EeCCCCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhc
Confidence 566777776552 34557788899999887632111 246889998844332 11
Q ss_pred ------------CccCCCCCCCcCCCChhhhhhhhhhHHH
Q psy9943 54 ------------DRISAGDFFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 54 ------------G~Ls~~~m~DgLHLt~~GY~k~a~~l~~ 81 (135)
...+.-++.|++|||+++++.+|+.+..
T Consensus 230 ~~~~~~~~~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 230 DYVYSYSPREACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred CCCccccccCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 0234556799999999999999987653
No 35
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=97.40 E-value=0.00019 Score=62.81 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=56.0
Q ss_pred CcccccCCCCCCCh--------hHHHHHHHHHHHHHHhhhhhcCCC--CeEEEeCCCCC------------cC-----CC
Q psy9943 1 MSQELLPRGRNRNP--------LWEKFFAVNKLLKDSLSDRLSDRS--RLEFISHDISD------------LV-----SD 53 (135)
Q Consensus 1 ~LlslLPrg~~pn~--------~r~~i~~iN~~L~~~~~~~ls~~~--~V~fiDi~~~f------------l~-----~d 53 (135)
+|++|.|.|-.|.. +.......|+.|+.++....+..| ++.|+|++..| .+ ..
T Consensus 279 vV~nlpPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~cCg~ 358 (408)
T PRK15381 279 LVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHH 358 (408)
T ss_pred EEeCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCccccccCC
Confidence 36677888877632 233445578888887763322334 47788887533 21 12
Q ss_pred Ccc-------------CCCCCCCcCCCChhhhhhhhhhHHHHHHH
Q psy9943 54 DRI-------------SAGDFFDFLRLTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 54 G~L-------------s~~~m~DgLHLt~~GY~k~a~~l~~~l~q 85 (135)
|.+ ..-++.|.+|||+++|+.+|+.+...|..
T Consensus 359 G~~~~~~~C~p~~~~C~~YvFWD~vHPTe~ah~iiA~~~~~~i~~ 403 (408)
T PRK15381 359 GYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAH 403 (408)
T ss_pred CccCCccccCcccCCCCceEecCCCCChHHHHHHHHHHHHHHHHH
Confidence 322 12255899999999999999999998865
No 36
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0005 Score=59.31 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCc-cC----------CCC-CCCcCCCChhhhhhhhhhHHH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDR-IS----------AGD-FFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~-Ls----------~~~-m~DgLHLt~~GY~k~a~~l~~ 81 (135)
.+...+..+|.++...+. .-+-+||||+++|+++.|. .. -.+ ..||+|.|.+|=+.++.-+.+
T Consensus 241 ~l~~dm~~ln~iy~~~vE-----~~~gk~i~i~d~~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k 315 (354)
T COG2845 241 KLNADMVYLNKIYSKAVE-----KLGGKFIDIWDGFVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEK 315 (354)
T ss_pred ccchHHHHHHHHHHHHHH-----HhCCeEEEecccccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHH
Confidence 466778889999997666 4467999999999999877 11 122 379999999999999999999
Q ss_pred HHHHHHhhH
Q psy9943 82 IIEKAKKKK 90 (135)
Q Consensus 82 ~l~qLLee~ 90 (135)
.|...|++.
T Consensus 316 ~I~~~l~~a 324 (354)
T COG2845 316 PIRAELETA 324 (354)
T ss_pred HHHhhhccc
Confidence 998888764
No 37
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.18 E-value=0.00057 Score=56.15 Aligned_cols=79 Identities=19% Similarity=0.058 Sum_probs=50.6
Q ss_pred cccccCCCCCCC--------------hhHHHHHHHHHHHHHHhhhhhcCCC--CeEEEeCCC------------CCcCCC
Q psy9943 2 SQELLPRGRNRN--------------PLWEKFFAVNKLLKDSLSDRLSDRS--RLEFISHDI------------SDLVSD 53 (135)
Q Consensus 2 LlslLPrg~~pn--------------~~r~~i~~iN~~L~~~~~~~ls~~~--~V~fiDi~~------------~fl~~d 53 (135)
|+++.|.|-.|. .+.+.....|+.|+.++....+..+ ++.|+|++. +|.+..
T Consensus 183 v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~yGf~~~~ 262 (315)
T cd01837 183 VPGLGPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKYGFENTL 262 (315)
T ss_pred ecCCCCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhcCCcCCC
Confidence 566777666552 2345667788888888764322233 477899885 332221
Q ss_pred ------Cc-----------------cCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 54 ------DR-----------------ISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 54 ------G~-----------------Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
|. -+.-++.|++|||+++|+.+|+.+.
T Consensus 263 ~aCc~~g~~~~~~~c~~~~~~~C~~p~~y~fwD~~HpT~~~~~~ia~~~~ 312 (315)
T cd01837 263 KACCGTGGPEGGLLCNPCGSTVCPDPSKYVFWDGVHPTEAANRIIADALL 312 (315)
T ss_pred cCccCCCCCCcccccCCCCCCcCCCccceEEeCCCChHHHHHHHHHHHHh
Confidence 11 1222568999999999999998765
No 38
>PLN03156 GDSL esterase/lipase; Provisional
Probab=96.97 E-value=0.0019 Score=54.94 Aligned_cols=84 Identities=14% Similarity=0.048 Sum_probs=52.4
Q ss_pred cccccCCCCCCC--------------hhHHHHHHHHHHHHHHhhhhhcCCC--CeEEEeCCCCC------------cCCC
Q psy9943 2 SQELLPRGRNRN--------------PLWEKFFAVNKLLKDSLSDRLSDRS--RLEFISHDISD------------LVSD 53 (135)
Q Consensus 2 LlslLPrg~~pn--------------~~r~~i~~iN~~L~~~~~~~ls~~~--~V~fiDi~~~f------------l~~d 53 (135)
|+++.|.|-.|. .+.......|+.|+.++...-+..+ ++.|+|+++.| .+.+
T Consensus 214 V~~lpplGc~P~~~~~~~~~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~ 293 (351)
T PLN03156 214 LGGLPPMGCLPLERTTNLMGGSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTS 293 (351)
T ss_pred ecCCCccccCHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCC
Confidence 566777765442 2344556678888877753222233 57788887433 2221
Q ss_pred ------Cc-----------------cCCCCCCCcCCCChhhhhhhhhhHHHHHHH
Q psy9943 54 ------DR-----------------ISAGDFFDFLRLTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 54 ------G~-----------------Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~q 85 (135)
|. -+.-++.|++|||+++|+.+|+.+...|..
T Consensus 294 ~aCCg~g~~~~~~~C~~~~~~~C~~p~~yvfWD~~HPTe~a~~~iA~~~~~~l~~ 348 (351)
T PLN03156 294 VACCATGMFEMGYLCNRNNPFTCSDADKYVFWDSFHPTEKTNQIIANHVVKTLLS 348 (351)
T ss_pred ccccCCCCCCCccccCCCCCCccCCccceEEecCCCchHHHHHHHHHHHHHHHHH
Confidence 11 133366899999999999999988765443
No 39
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=96.31 E-value=0.0051 Score=52.45 Aligned_cols=64 Identities=9% Similarity=-0.083 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhcCCC-----CeEEEeC-CCCCcCC---CCcc-CCCCC-CCcCCCChhhhhhhhhhHHH
Q psy9943 13 NPLWEKFFAVNKLLKDSLSDRLSDRS-----RLEFISH-DISDLVS---DDRI-SAGDF-FDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 13 n~~r~~i~~iN~~L~~~~~~~ls~~~-----~V~fiDi-~~~fl~~---dG~L-s~~~m-~DgLHLt~~GY~k~a~~l~~ 81 (135)
+...++..+.|+.+.+++. .+ .|.|+|. ....+++ +|.. -+-++ .||.|||+.|.+.+|+.++.
T Consensus 230 n~t~~~a~~l~~~~~~ia~-----~~~f~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~lW~ 304 (305)
T cd01826 230 NLTSERAAQLSNVLKRIAA-----NETFNNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEVFWK 304 (305)
T ss_pred hHHHHHHHHHHHHHHHHHh-----hccccceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHHhhc
Confidence 4567788889999988876 44 6788887 4444444 4554 44455 59999999999999998874
No 40
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=94.93 E-value=0.018 Score=45.97 Aligned_cols=61 Identities=7% Similarity=-0.087 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
++|..+.+-|..=++.++ ..++.++|++-.|-.+. ..--.||.|.|+.||+.++..|...|
T Consensus 122 ~lr~dv~eaN~~A~~va~-----~~~~dVlDLh~~fr~~~----~~~~~DgVHwn~~a~r~ls~lll~hI 182 (183)
T cd01842 122 SLRYDVLEGNFYSATLAK-----CYGFDVLDLHYHFRHAM----QHRVRDGVHWNYVAHRRLSNLLLAHV 182 (183)
T ss_pred cchhHHHHHHHHHHHHHH-----HcCceeeehHHHHHhHH----hhcCCCCcCcCHHHHHHHHHHHHHhh
Confidence 458888999987777766 56899999999883321 23338999999999999988876654
No 41
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=94.64 E-value=0.12 Score=40.12 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeC-CCCC-cCC-CCccC------CCCCCCcCC-CChhhhhhhhhhHHHHH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISH-DISD-LVS-DDRIS------AGDFFDFLR-LTESGSRKVFGPIHDII 83 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi-~~~f-l~~-dG~Ls------~~~m~DgLH-Lt~~GY~k~a~~l~~~l 83 (135)
.....+.++|+.+.+.+. ..++++++|+ ...+ ... ||-.+ ..-..||+| ..+.-|..|.+.|..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~----~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~~~l 261 (263)
T PF13839_consen 186 ITNEQIDELNEALREALK----KNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLLNLL 261 (263)
T ss_pred CCHHHHHHHHHHHHHHhh----cCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHHHHh
Confidence 346778888888887662 3889999999 4322 222 32221 111589999 99999999999998877
Q ss_pred H
Q psy9943 84 E 84 (135)
Q Consensus 84 ~ 84 (135)
|
T Consensus 262 c 262 (263)
T PF13839_consen 262 C 262 (263)
T ss_pred h
Confidence 6
No 42
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=93.61 E-value=0.18 Score=37.87 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=44.5
Q ss_pred cccccCCCCCC----ChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhh
Q psy9943 2 SQELLPRGRNR----NPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFG 77 (135)
Q Consensus 2 LlslLPrg~~p----n~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~ 77 (135)
|+-|.|++..- .--.+..+++-+.|+..+. ..++.++|.++.=-+ +-+|.|-.||...|...+.+
T Consensus 53 lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~-----~~gf~v~D~s~~~y~------~yfm~D~iHlgw~GWv~vd~ 121 (130)
T PF04914_consen 53 LFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLK-----SQGFNVADFSDDEYE------PYFMQDTIHLGWKGWVYVDQ 121 (130)
T ss_dssp EEEE----HHHHHHTT--HHHHHHHHHHHHHHHH-----TTT--EEE-TTGTTS------TTSBSSSSSB-THHHHHHHH
T ss_pred EEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHH-----HCCCEEEecccCCCC------CceeeecccCchhhHHHHHH
Confidence 34567776521 1234556667777777776 567899998855333 45899999999999999999
Q ss_pred hHHHHHH
Q psy9943 78 PIHDIIE 84 (135)
Q Consensus 78 ~l~~~l~ 84 (135)
+|.+.+.
T Consensus 122 ~i~~f~~ 128 (130)
T PF04914_consen 122 AIYPFYK 128 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 43
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=92.54 E-value=0.052 Score=46.65 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=51.0
Q ss_pred HHHHHHHHH-HHHHhhhhhcCCCCeEEEeCCCCCcCCCCccC-----------CCCCCCcCCCChhhhhhhhhhHHHHHH
Q psy9943 17 EKFFAVNKL-LKDSLSDRLSDRSRLEFISHDISDLVSDDRIS-----------AGDFFDFLRLTESGSRKVFGPIHDIIE 84 (135)
Q Consensus 17 ~~i~~iN~~-L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls-----------~~~m~DgLHLt~~GY~k~a~~l~~~l~ 84 (135)
.-...+|+. ++..+. .-+..|+|+.+ |+|++|... .-=+.||||.|.+ +++.+=-+...|.
T Consensus 166 ~d~l~~n~~~yr~~a~-----~~g~~fvDiwd-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~ve~pi~ 238 (327)
T PF04311_consen 166 ADMLALNDILYRDAAE-----KAGGGFVDIWD-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYVEKPIM 238 (327)
T ss_pred HHHHHhcchhHHHHHH-----HhcCccccccc-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEechHhh
Confidence 345568888 776665 56789999999 999887643 2346899999999 9999887777777
Q ss_pred HHHhh
Q psy9943 85 KAKKK 89 (135)
Q Consensus 85 qLLee 89 (135)
.+|+.
T Consensus 239 r~l~~ 243 (327)
T PF04311_consen 239 RLLGY 243 (327)
T ss_pred hhhcc
Confidence 77664
No 44
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=91.48 E-value=0.31 Score=42.25 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHH
Q psy9943 20 FAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 20 ~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~ 81 (135)
+..+..++.++. ..++.|+|.+. |+.+..+.+.|+.|++..+|.-.++.|..
T Consensus 290 ~~w~~~i~~l~~-----~~~~~~~dmn~-----d~~~~C~~F~D~~HlS~~Cy~e~~~~l~~ 341 (345)
T PF07611_consen 290 ESWWPIIKKLAK-----EYGIPFLDMNE-----DPSYKCDDFSDASHLSPDCYPELMDILFK 341 (345)
T ss_pred hHHHHHHHHHHh-----cCCceEecccC-----CCCcchhhccCccccCcccchHHHHHHHH
Confidence 445777777765 77999999874 78999999999999999999988876654
No 45
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=87.45 E-value=2.8 Score=36.90 Aligned_cols=77 Identities=17% Similarity=0.079 Sum_probs=51.4
Q ss_pred cccCCCCCCC----hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCC------------CCcCCC-----CccC-----
Q psy9943 4 ELLPRGRNRN----PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDI------------SDLVSD-----DRIS----- 57 (135)
Q Consensus 4 slLPrg~~pn----~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~------------~fl~~d-----G~Ls----- 57 (135)
++-|.+..-. ..++.....|..|..-+++. --+|-++|++. +|.+.+ .+.+
T Consensus 220 ~l~P~~~~~~~~~~~a~~~t~~~Na~L~~~L~~~---g~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~~~~ 296 (370)
T COG3240 220 SLTPAGKAYGTEAIQASQATIAFNASLTSQLEQL---GGNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNPACS 296 (370)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHh---cCcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCcccc
Confidence 4455554322 35677888999999887732 35788888873 222222 1111
Q ss_pred ---------C--CCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 58 ---------A--GDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 58 ---------~--~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
. =+|-|.+|||.+|...+++-|...+
T Consensus 297 a~~p~~~~~~~~ylFaD~vHPTt~~H~liAeyila~l 333 (370)
T COG3240 297 ASLPALCAAPQKYLFADSVHPTTAVHHLIAEYILARL 333 (370)
T ss_pred cccccccCCccceeeecccCCchHHHHHHHHHHHHHH
Confidence 2 3568999999999999999887655
No 46
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=62.23 E-value=27 Score=27.69 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
..-..|++....++. .+|++.+++..+ +.|..|++++||+.+.+.+...
T Consensus 203 ~~~~~vr~aQ~~~~~----~~~~~~~v~t~d-------------~~~~~~i~~~~~~~~G~R~a~~ 251 (255)
T PF03629_consen 203 EGWAEVREAQRRVAE----EDPNTGMVSTSD-------------LGDPDDIHPAGKRELGERLAEA 251 (255)
T ss_dssp TTHHHHHHHHHHHHH----HSTTEEEEE-TT--------------B-TTSS-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh----hCCCEEEEEccC-------------CCCCCCcCHHHHHHHHHHHHHH
Confidence 345678888887775 488999996554 4677788999999999888754
No 47
>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.
Probab=55.56 E-value=1.2 Score=28.68 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=29.7
Q ss_pred CCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhH
Q psy9943 36 DRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPI 79 (135)
Q Consensus 36 ~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l 79 (135)
.+.+-.||||-..+.+.||.+-+ +--|+=||++-+..+.++|
T Consensus 15 ~fkG~~~vdIRe~y~~~~g~~~P--~kKGIsL~~~q~~~l~~~l 56 (56)
T PF02229_consen 15 EFKGKPYVDIREWYEKKDGEWKP--TKKGISLTPEQWKELKEAL 56 (56)
T ss_dssp EETTSEEEEEEEEETTSSS-EEE--EEEEEEE-HHHHHHHHHH-
T ss_pred EeCCeEEEEEEeeEEcCCCcCcC--cCCEEEcCHHHHHHHHhhC
Confidence 35667999999999988898766 5667777777776665543
No 48
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=54.42 E-value=28 Score=28.85 Aligned_cols=39 Identities=3% Similarity=-0.055 Sum_probs=29.4
Q ss_pred CCCCeEEEeCCCCCcCCCCccCCC--CCCCcCCCChhhhhhhhh
Q psy9943 36 DRSRLEFISHDISDLVSDDRISAG--DFFDFLRLTESGSRKVFG 77 (135)
Q Consensus 36 ~~~~V~fiDi~~~fl~~dG~Ls~~--~m~DgLHLt~~GY~k~a~ 77 (135)
..++|.|.--+.-+.|+ +... |..|.+|||+.|-+-+++
T Consensus 209 ~~~~v~YFPSYEiv~d~---lrdyrfy~~D~~Hps~~aV~~I~~ 249 (251)
T PF08885_consen 209 AFDDVDYFPSYEIVMDE---LRDYRFYAEDMRHPSPQAVDYIWE 249 (251)
T ss_pred cCCCceEcchHhhccCc---ccccccccccCCCCCHHHHHHHHh
Confidence 47889999888888865 3222 558999999999776654
No 49
>KOG2712|consensus
Probab=52.65 E-value=24 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=36.4
Q ss_pred CCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 36 DRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 36 ~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
.+.+..||||-..|++ ||.+-++ --|+-||.+-|..+-+.+...
T Consensus 55 eFkGk~~VdIREyY~k-dG~mlPg--kKGISLs~~qW~~Lk~~~~eI 98 (108)
T KOG2712|consen 55 EFKGKILVDIREYYVK-DGKMLPG--KKGISLSLEQWSKLKEHIEEI 98 (108)
T ss_pred hcCCceEEehhHhhhc-cCccccC--ccccccCHHHHHHHHHHHHHH
Confidence 4678999999999999 7888777 789999999998877665543
No 50
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=46.23 E-value=21 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=25.9
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHhh
Q psy9943 3 QELLPRGRNRNPLWEKFFAVNKLLKDSLS 31 (135)
Q Consensus 3 lslLPrg~~pn~~r~~i~~iN~~L~~~~~ 31 (135)
+||.|.++....+|+....+|+.|...++
T Consensus 132 ~GiVPe~~l~R~fRD~~G~lnQ~la~~~d 160 (175)
T COG2087 132 LGIVPEYRLGRLFRDIAGRLNQQLAALAD 160 (175)
T ss_pred CCcCcCchhhHHHHHHHhHHHHHHHHhcC
Confidence 68889888888899999999999998876
No 51
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=46.12 E-value=30 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------CcCCCCccCC----CCCCC
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDIS------DLVSDDRISA----GDFFD 63 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~------fl~~dG~Ls~----~~m~D 63 (135)
+.+.+||++=++.-. .+..-++.|+-.+ =++.||.+.+ ++|+|
T Consensus 12 eCVr~Vn~iae~nW~----~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPD 64 (74)
T PF12357_consen 12 ECVRRVNEIAEENWK----QYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPD 64 (74)
T ss_pred HHHHHHHHHHHHHHH----HhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCC
Confidence 567778877665433 2334455676544 4578999876 77888
No 52
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=41.50 E-value=5 Score=31.27 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=2.1
Q ss_pred eEEEeCCCCCc
Q psy9943 40 LEFISHDISDL 50 (135)
Q Consensus 40 V~fiDi~~~fl 50 (135)
|.=||+...|.
T Consensus 48 v~~idl~vpL~ 58 (154)
T PF06375_consen 48 VAEIDLSVPLK 58 (154)
T ss_dssp EEE---SS---
T ss_pred ccccccCCCee
Confidence 33444444444
No 53
>PF14903 WG_beta_rep: WG containing repeat
Probab=40.45 E-value=5.2 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=21.0
Q ss_pred CCcCCCCccCCCCCCCcCCCChhhhhhh
Q psy9943 48 SDLVSDDRISAGDFFDFLRLTESGSRKV 75 (135)
Q Consensus 48 ~fl~~dG~Ls~~~m~DgLHLt~~GY~k~ 75 (135)
+|+|.+|.+--...+|.+.+-..||..+
T Consensus 2 G~id~~G~~vi~~~yd~i~~~~~g~~~v 29 (35)
T PF14903_consen 2 GYIDKNGKIVIPPKYDEIYPFSNGYAIV 29 (35)
T ss_pred EEEeCCCCEEEEccccCccccCCCEEEE
Confidence 3677888876677788888878887654
No 54
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=40.19 E-value=20 Score=31.50 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=43.0
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhh--hhhhhh
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGS--RKVFGP 78 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY--~k~a~~ 78 (135)
+|++.||+|... .-+..+..+- ..+|.|||..|+|+-++-.+.+-+.--||.+-..=. +.-+..
T Consensus 126 VlvnylPvGs~~---------A~~~YA~AAl-----~aG~afVN~~P~~ia~~p~~a~~f~e~glPi~GDD~Ksq~GaTi 191 (351)
T TIGR03450 126 VLVSYLPVGSEE---------ADKFYAQCAI-----DAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIKSQVGATI 191 (351)
T ss_pred EEEECCccchHH---------HHHHHHHHHH-----HcCCceEeccCccccCCHHHHHHHHHCCCCEecccccccCCCch
Confidence 367788888432 3334443322 578999999999999876666644444444222211 123445
Q ss_pred HHHHHHHHHh
Q psy9943 79 IHDIIEKAKK 88 (135)
Q Consensus 79 l~~~l~qLLe 88 (135)
++..|..++.
T Consensus 192 ~h~vLa~lf~ 201 (351)
T TIGR03450 192 THRVLAKLFE 201 (351)
T ss_pred HHHHHHHHHH
Confidence 5666666654
No 55
>PF07818 HCNGP: HCNGP-like protein; InterPro: IPR012479 This family comprises sequences bearing significant similarity to the mouse transcriptional regulator protein HCNGP (Q02614 from SWISSPROT). This protein is localised to the nucleus and is thought to be involved in the regulation of beta-2-microglobulin genes.
Probab=38.45 E-value=96 Score=22.04 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=17.4
Q ss_pred eEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhh
Q psy9943 40 LEFISHDISDLVSDDRISAGDFFDFLRLTESGSR 73 (135)
Q Consensus 40 V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~ 73 (135)
|+|++|+. -||--+..++|-..+.+.+|.
T Consensus 50 i~~~~Ide-----~gTn~p~~i~dP~~~~~~~y~ 78 (96)
T PF07818_consen 50 IEFFGIDE-----YGTNFPKDIFDPHGFPEEDYY 78 (96)
T ss_pred HHHcCCCc-----ccCCCChhhcCCCCCCHHHHH
Confidence 56666654 477555556775555555554
No 56
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=37.84 E-value=32 Score=25.77 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.3
Q ss_pred cccccC-CCCCCC
Q psy9943 2 SQELLP-RGRNRN 13 (135)
Q Consensus 2 LlslLP-rg~~pn 13 (135)
.++||| ||.--|
T Consensus 26 ~qailPLrGKiLN 38 (120)
T cd03365 26 YYGVFPLRGKLLN 38 (120)
T ss_pred eEEEeccCCccch
Confidence 368888 454434
No 57
>KOG3967|consensus
Probab=37.63 E-value=24 Score=29.84 Aligned_cols=41 Identities=7% Similarity=-0.088 Sum_probs=32.1
Q ss_pred CcCCCCccCCCCC--------CCcCCCChhhhhhhhhhHHHHHHHHHhh
Q psy9943 49 DLVSDDRISAGDF--------FDFLRLTESGSRKVFGPIHDIIEKAKKK 89 (135)
Q Consensus 49 fl~~dG~Ls~~~m--------~DgLHLt~~GY~k~a~~l~~~l~qLLee 89 (135)
+.|+.|+|.+..+ .|-+|-|+.-|+.++++|..++.+|||.
T Consensus 20 aFdekGvLr~iktgePF~fn~~eD~~enqk~ye~Lge~i~~~VYeLLEk 68 (297)
T KOG3967|consen 20 AFDEKGVLRHIKTGEPFVFNYREDLHENQKRYEALGEIITKYVYELLEK 68 (297)
T ss_pred eecCcceeeeccCCCCeEEecHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566655432 4568999999999999999999999985
No 58
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=37.14 E-value=1.5e+02 Score=22.68 Aligned_cols=65 Identities=8% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCC-CCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 20 FAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGD-FFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 20 ~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~-m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
..+|+-.+++-. +++.+|.||-.++.+- .+..+..++ ..+.+.|-..+=.---+.|.+.+.|++.
T Consensus 71 ~~L~~w~~~l~~---~GFkhV~~lT~D~~Wk-~~~~~~~~liwlPaipLe~md~~~k~~iv~~qv~qll~ 136 (142)
T PF10673_consen 71 ERLNDWCEELKE---SGFKHVFYLTSDSEWK-QEEELEGSLIWLPAIPLEHMDDSAKQEIVEDQVKQLLP 136 (142)
T ss_pred HHHHHHHHHHHh---cCCcEEEEEecCcccc-cccCCCCcEEEEeCccccccCHHHHHHHHHHHHHHHHH
Confidence 445555554433 3799999999999998 223333333 2555555444444555667777777765
No 59
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=36.39 E-value=1.5e+02 Score=21.86 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCeEE-EeCCCC--CcCCCCc-----cCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHhhHHH
Q psy9943 37 RSRLEF-ISHDIS--DLVSDDR-----ISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKE 92 (135)
Q Consensus 37 ~~~V~f-iDi~~~--fl~~dG~-----Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLee~ee 92 (135)
..+|+| +|+++. ..++||+ |.+.+|.+|-| -.+++.|--.|..+-+|.+.
T Consensus 41 ae~itysvdlGDv~avaNSdGrL~~LtLhpgv~t~Ysh------geLaerlN~ai~alr~eAea 98 (109)
T PF10921_consen 41 AETITYSVDLGDVRAVANSDGRLLELTLHPGVMTGYSH------GELAERLNTAITALREEAEA 98 (109)
T ss_pred hhcceeeccCCcEEEEecCCCcEEEEEeccchhcCcch------HHHHHHHHHHHHHHHHHHhh
Confidence 455665 466653 3467887 46778888766 45677776667766665443
No 60
>KOG3965|consensus
Probab=35.05 E-value=1.2e+02 Score=23.84 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHH----hhhhhcCCCCeEEEeCC
Q psy9943 14 PLWEKFFAVNKLLKDS----LSDRLSDRSRLEFISHD 46 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~----~~~~ls~~~~V~fiDi~ 46 (135)
-..+.++.||....+. +...|...+++-||||-
T Consensus 33 le~EA~A~V~e~~~~V~~i~VSe~Lp~~~dliyiNV~ 69 (160)
T KOG3965|consen 33 LELEAIAAVNEVAFAVQHISVSEMLPRTSDLIYINVR 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeE
Confidence 4466777777754432 12233356789999986
No 61
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.49 E-value=76 Score=27.12 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHH
Q psy9943 15 LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHD 81 (135)
Q Consensus 15 ~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~ 81 (135)
-..-..+++.+|.+. ...|+..+=++...||.+. ++++ +.-|++.|+.+|+.|..
T Consensus 73 d~~~l~~~k~li~r~---------~~~~~SeHL~~~~~~g~~y-DLlP--lP~teea~~~va~~I~~ 127 (282)
T COG3220 73 DLDLLRRIKALIKRY---------DPAFFSEHLSYCTDDGHLY-DLLP--LPFTEEAVDHVAARIRE 127 (282)
T ss_pred CHHHHHHHHHHHHHh---------CchhhhhheeeeccCCeee-cccc--CcccHHHHHHHHHHHHH
Confidence 355677788877754 2467777777888888876 4333 35789999999998864
No 62
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=34.45 E-value=9.9 Score=29.51 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=33.8
Q ss_pred CCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHhhH
Q psy9943 47 ISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKK 90 (135)
Q Consensus 47 ~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLee~ 90 (135)
+.++++||+|+...+.+-+==+++.-..+-+.+||++.+.+++.
T Consensus 54 ~~il~~~g~idR~~L~~~vF~d~~~~~~L~~iihP~I~~~~~~~ 97 (180)
T PF01121_consen 54 EEILDEDGEIDRKKLAEIVFSDPEKLKKLENIIHPLIREEIEKF 97 (180)
T ss_dssp GGGBETTSSB-HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHHH
Confidence 56788899998887777666668888888889999988877653
No 63
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=33.88 E-value=33 Score=25.44 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=7.6
Q ss_pred cccccC-CCCCCC
Q psy9943 2 SQELLP-RGRNRN 13 (135)
Q Consensus 2 LlslLP-rg~~pn 13 (135)
.++||| ||.--|
T Consensus 23 ~qailPLrGKiLN 35 (115)
T cd01030 23 FQAVFPLRGKILN 35 (115)
T ss_pred cEEEeccCCeecc
Confidence 378899 455445
No 64
>KOG3670|consensus
Probab=33.38 E-value=40 Score=30.07 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=31.9
Q ss_pred eCCCCCcCCCCccCCCCC-CCcCCCChhhhhhhhhhHHHHHHH
Q psy9943 44 SHDISDLVSDDRISAGDF-FDFLRLTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 44 Di~~~fl~~dG~Ls~~~m-~DgLHLt~~GY~k~a~~l~~~l~q 85 (135)
++....+. +|..+..++ +|=-||++-|-+.+|..||.-|-+
T Consensus 311 ~~t~P~l~-~g~~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~e 352 (397)
T KOG3670|consen 311 DITIPPLP-HGRYDLTFFAPDCFHLSQRGHAIAAKHLWNNLFE 352 (397)
T ss_pred ccCCCcCC-CCCCCchhcccCccccchHHHHHHHHHHHHHhhc
Confidence 33344455 688877777 999999999999999999976544
No 65
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=69 Score=27.81 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=28.7
Q ss_pred ccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHhhHHH
Q psy9943 55 RISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKE 92 (135)
Q Consensus 55 ~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLee~ee 92 (135)
+++.++.-=|.-=|++.|+..+..|+..|..+.+...+
T Consensus 186 ~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~~ 223 (324)
T COG0435 186 TVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILSE 223 (324)
T ss_pred cccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666677778999999999999888877665543
No 66
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.11 E-value=18 Score=28.87 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=9.1
Q ss_pred hhhhhhhhhHHHHHHHH
Q psy9943 70 SGSRKVFGPIHDIIEKA 86 (135)
Q Consensus 70 ~GY~k~a~~l~~~l~qL 86 (135)
+|++.-+.+|-.....+
T Consensus 88 ~gFrL~pGplPE~yr~~ 104 (178)
T PF10278_consen 88 AGFRLHPGPLPEQYRLL 104 (178)
T ss_pred hhccCCCCCCchHHhhh
Confidence 35665566665554444
No 67
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.47 E-value=1.6e+02 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=19.5
Q ss_pred cCCCChhhhhhhhhhHHHHHHHHH
Q psy9943 64 FLRLTESGSRKVFGPIHDIIEKAK 87 (135)
Q Consensus 64 gLHLt~~GY~k~a~~l~~~l~qLL 87 (135)
.++|++.-+..++..|...|+++.
T Consensus 96 H~Wldp~n~~~~a~~I~~~L~~~d 119 (264)
T cd01020 96 HLWYDPETMSKVANALADALVKAD 119 (264)
T ss_pred ceecCHhHHHHHHHHHHHHHHHhC
Confidence 456789999999999988887763
No 68
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=31.46 E-value=18 Score=28.22 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 46 DISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 46 ~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
|+.++++||+++.....+-+=-+++-...+-+.+||.+.+.++
T Consensus 52 G~~i~~~~g~idr~~L~~~vF~~~~~~~~L~~i~hP~v~~~~~ 94 (196)
T PRK14732 52 GPSILDENGKPNRKKISEIVFNDEEKLKALNELIHPLVRKDFQ 94 (196)
T ss_pred ChhhcCCCCccCHHHHHHHHhCCHHHHHHHHHHhhHHHHHHHH
Confidence 4556777888777766666666678888888899999887664
No 69
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=30.92 E-value=76 Score=26.10 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcC-CCChhhh-hhhhhhHHHHHHHHHhh
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFL-RLTESGS-RKVFGPIHDIIEKAKKK 89 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgL-HLt~~GY-~k~a~~l~~~l~qLLee 89 (135)
++.-++-+.|.+.+.. + |-. .++-.+|.++|.+..+.- +....|| .-|++.....+.++|++
T Consensus 151 ~~~~~lG~ai~~al~~---------~-~~r-v~ii~SG~lsH~l~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~ 214 (272)
T cd07362 151 EESYTWGEVIGKALLE---------S-DKR-VVFLASGSLSHNLVRGPEAEEGMNHYPSLAEQQMDRRFIQLLRE 214 (272)
T ss_pred HHHHHHHHHHHHHHHh---------h-CCC-EEEEEeCcccccCCCCCCCcccccCCCChhHHHHHHHHHHHHHc
Confidence 3445566666655541 1 222 233345889999887664 2233456 35666665555555544
No 70
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=30.15 E-value=69 Score=26.24 Aligned_cols=70 Identities=9% Similarity=-0.196 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhcCCCC---------eEEE---eCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 13 NPLWEKFFAVNKLLKDSLSDRLSDRSR---------LEFI---SHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 13 n~~r~~i~~iN~~L~~~~~~~ls~~~~---------V~fi---Di~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
+..++.|+++|..|+.+++.... .|- |+|= .+...|++-..--.+.++.-|.-++.++.+...+.|.
T Consensus 15 SM~Ge~IealN~Glq~m~~~Lkq-dp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~~p~L~a~GgT~lGaAl~~a~d~Ie 93 (207)
T COG4245 15 SMIGEPIEALNAGLQMMIDTLKQ-DPYALERVELSIVTFGGPARVIQPFTDAANFNPPILTAQGGTPLGAALTLALDMIE 93 (207)
T ss_pred ccccccHHHHHHHHHHHHHHHHh-ChhhhheeEEEEEEecCcceEEechhhHhhcCCCceecCCCCchHHHHHHHHHHHH
Confidence 45678899999999987764332 221 2221 1123344444444455555576677777766666665
Q ss_pred HHH
Q psy9943 81 DII 83 (135)
Q Consensus 81 ~~l 83 (135)
...
T Consensus 94 ~~~ 96 (207)
T COG4245 94 ERK 96 (207)
T ss_pred HHH
Confidence 443
No 71
>KOG4043|consensus
Probab=29.90 E-value=1.5e+02 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=19.9
Q ss_pred hhhhhhhhhHHHHHHHHHhhHHHHHHH
Q psy9943 70 SGSRKVFGPIHDIIEKAKKKKKEKKKK 96 (135)
Q Consensus 70 ~GY~k~a~~l~~~l~qLLee~eeKKkk 96 (135)
+|++.-+.|+......+.+++.++.+-
T Consensus 117 aGFkLh~GPl~EqYR~~f~~pa~ehkN 143 (214)
T KOG4043|consen 117 AGFKLHAGPLDEQYRHLFERPAEEHKN 143 (214)
T ss_pred cceecCCCCchHHHHHHhcChhhhccc
Confidence 577777788887778888777777443
No 72
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=29.61 E-value=50 Score=25.86 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCC------cCCCChhhhhhhhhhHHHHHHHHH
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFD------FLRLTESGSRKVFGPIHDIIEKAK 87 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~D------gLHLt~~GY~k~a~~l~~~l~qLL 87 (135)
+.-.++..++... ..++.+|+++ +++|.++++.. .|.|.+.|+-..|.+.-..++++.
T Consensus 57 ev~~Ai~kA~~~A-------~~nl~~V~~~------~~Ti~~~v~gk~gs~kV~l~Pap~G~Gl~a~~~i~~il~la 120 (168)
T PRK00550 57 EVPEAIRKAVEDA-------KKNMIKVPLV------GGTIPHEVIGKFGAAKVLLKPASEGTGVIAGGAVRAVLELA 120 (168)
T ss_pred hHHHHHHHHHHHH-------HhCEEEEecC------CCccceeEEEEEceEEEEEEeCCCCCceEeChHHHHHHHHc
Confidence 3344455544433 4578999987 68888887744 466889999888887777777664
No 73
>PF11512 Atu4866: Agrobacterium tumefaciens protein Atu4866; InterPro: IPR020955 The function of the proteins in this entry is not known, though Atu4866 from Agrobacterium tumefaciens has been structurally characterised. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands []. Atu4866 has a potential ligand-binding site where it has a stretch of conserved residues on the surface. ; PDB: 2JMB_A.
Probab=28.93 E-value=12 Score=26.19 Aligned_cols=17 Identities=18% Similarity=-0.032 Sum_probs=14.1
Q ss_pred CCcCCCCccCCCCCCCc
Q psy9943 48 SDLVSDDRISAGDFFDF 64 (135)
Q Consensus 48 ~fl~~dG~Ls~~~m~Dg 64 (135)
.|+++||.|..++.+||
T Consensus 9 mWvt~Dg~ir~eLl~dG 25 (78)
T PF11512_consen 9 MWVTADGHIRQELLPDG 25 (78)
T ss_dssp EEE-SSSSEEEEEETTT
T ss_pred EEECCCCcEEEEEcCCC
Confidence 37899999999999997
No 74
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=28.69 E-value=43 Score=27.66 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=25.2
Q ss_pred CeEEEeCCCCCcCCCCccCCCCCCCcCCCCh
Q psy9943 39 RLEFISHDISDLVSDDRISAGDFFDFLRLTE 69 (135)
Q Consensus 39 ~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~ 69 (135)
.++|.+++..-+|+||..++.+|+.-+-|.+
T Consensus 171 dlhftnlgtppldedgrwdpalmynpcgpep 201 (300)
T PF05750_consen 171 DLHFTNLGTPPLDEDGRWDPALMYNPCGPEP 201 (300)
T ss_pred eeeeccCCCCCCCccCCcChhhhcCCCCCCC
Confidence 4677888899999999999999988655443
No 75
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=28.36 E-value=73 Score=26.76 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=33.6
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCc
Q psy9943 4 ELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDL 50 (135)
Q Consensus 4 slLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl 50 (135)
-+||-+.--..-++..+++|.++++.+..+||.+.+|--..++-+|-
T Consensus 88 d~Fp~dgLVsSP~eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp 134 (246)
T COG4669 88 DIFPKDGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLP 134 (246)
T ss_pred HhCCcccccCCcHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcC
Confidence 35555543222256678899999999999999999888777775554
No 76
>PRK05114 hypothetical protein; Provisional
Probab=27.99 E-value=65 Score=21.46 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCcC-CCChhhhhhhhhhHHHHHHHHHhhHH
Q psy9943 61 FFDFL-RLTESGSRKVFGPIHDIIEKAKKKKK 91 (135)
Q Consensus 61 m~DgL-HLt~~GY~k~a~~l~~~l~qLLee~e 91 (135)
|+|+| .||-+--+..++.|+.+..+-+.+.|
T Consensus 1 M~~~lp~LtHeeQQ~AVErIq~LMaqGmSsgE 32 (59)
T PRK05114 1 MFAGLPSLTHEQQQKAVERIQELMAQGMSSGE 32 (59)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHccccHHH
Confidence 55665 69999999999998887776655443
No 77
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=27.82 E-value=19 Score=28.03 Aligned_cols=43 Identities=9% Similarity=-0.025 Sum_probs=29.3
Q ss_pred CCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 46 DISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 46 ~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
|+.++++||+|+......-.==+++..+.+-+.+||.+.+.+.
T Consensus 54 g~~~~~~~g~idR~~L~~~vF~~~~~~~~le~i~hP~v~~~~~ 96 (200)
T PRK14734 54 GDDILNPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETA 96 (200)
T ss_pred CccccCCCChhhHHHHHHHHhCCHHHHHHHHHhhCHHHHHHHH
Confidence 3567778888877654443334577788888888888866654
No 78
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=27.43 E-value=1.7e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCC
Q psy9943 12 RNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVS 52 (135)
Q Consensus 12 pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~ 52 (135)
++.+.+.+..+=+.+.++.... +.+++.|||+|.+|--+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--g~~~l~~idiGGG~~~~ 209 (251)
T PF02784_consen 171 AEAFRQAIERLLDLAEELKEEL--GFEDLEFIDIGGGFGVP 209 (251)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT--TTTT-SEEEEESSB-SS
T ss_pred hHHHHHHHHHHHHHHhhhcccc--ccccccEEEeeCCCCCC
Confidence 3456666666666666554211 24469999999888665
No 79
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=27.38 E-value=74 Score=23.24 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 36 DRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 36 ~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
+.|-+-|+|.+...+..+|.++.+.-.. +.||..+++.|..+
T Consensus 80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 121 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGGTYFPPEDRYG-----RPGFKTVLEKIREL 121 (124)
T ss_pred CCCEEEEECCCCCEEeeeeecCCCCcCC-----CcCHHHHHHHHHHH
Confidence 6788888888877777776666655444 57999998877643
No 80
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=27.03 E-value=43 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhh
Q psy9943 18 KFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGS 72 (135)
Q Consensus 18 ~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY 72 (135)
.|.+.|+.|..+.+ |--..|-|-.|+++-+.- |++ .+..+||+-||-+|-
T Consensus 4 ai~al~~E~e~L~n---svGk~~g~khiySgrVHv-Gvl-k~v~pdy~iL~kSGk 53 (171)
T COG4937 4 AIFALTSEIEKLNN---SVGKDVGVKHIYSGRVHV-GVL-KDVEPDYLILNKSGK 53 (171)
T ss_pred HHHHHHHHHHHHHh---hhcceeeeeeEecCeEEE-EEE-eccCCCEEEEeecCC
Confidence 35556666665554 234567888888888876 666 467899999998773
No 81
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=26.94 E-value=2.3e+02 Score=26.51 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC-cCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISD-LVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~f-l~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
.++..+.++-+.+.++.. ....++|||+|.+| ++-+|+=+.... -..-.++.+|..|...+.+..+
T Consensus 255 ~~~~ai~~~~~i~~eL~~----~G~~l~~LDIGGGlgV~Y~g~~~~~~~-----s~~y~leeya~~Iv~~l~~~~~ 321 (624)
T TIGR01273 255 DVKKGVREAARFYCELRK----LGAKITYVDVGGGLGVDYDGTSSSSDC-----SVNYGLEEYAADVVQALREICD 321 (624)
T ss_pred HHHHHHHHHHHHHHHHHH----cCCCCCEEEeCCCcCCCCCCccccccc-----CCCCCHHHHHHHHHHHHHHHHH
Confidence 455556666666665544 13469999999998 344554221100 0112356666766666655543
No 82
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=26.76 E-value=2.7e+02 Score=24.00 Aligned_cols=66 Identities=6% Similarity=-0.059 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCC-CccCCCCCCCcCCCChhhhhhhhhhHHHHHHHHHh
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSD-DRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKK 88 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~d-G~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qLLe 88 (135)
.+.+.+..+-+++.++.. ....+++||+|.+|=-+- +.-.+. .+| .+--+..+++.|.+.+.+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~----~g~~l~~iDiGGGf~v~y~~~~~~~-~~~----~~~d~~~~~~~i~~~l~~~~~ 269 (409)
T cd06830 203 RIKSALREAARIYAELRK----LGANLRYLDIGGGLGVDYDGSRSSS-DSS----FNYSLEEYANDIVKTVKEICD 269 (409)
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCCcEEEcCCCcccCCCCCcCcc-cCC----CCCCHHHHHHHHHHHHHHHHH
Confidence 455555555555554433 135799999998884331 100000 000 011256677777776666553
No 83
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=26.61 E-value=72 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.9
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHhh
Q psy9943 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLS 31 (135)
Q Consensus 2 LlslLPrg~~pn~~r~~i~~iN~~L~~~~~ 31 (135)
||+|.|-+..|.+.+.....+.++.+++..
T Consensus 160 LM~ipp~~~d~~~~~~~F~~l~~l~~~l~~ 189 (228)
T COG0325 160 LMTIPPLTDDPEEIFAVFRKLRKLFDELKA 189 (228)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998888777777777666554
No 84
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=26.59 E-value=57 Score=27.05 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhh----HHHHHHHHHhh
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGP----IHDIIEKAKKK 89 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~----l~~~l~qLLee 89 (135)
+...++-+.|.+++.. ...+| ++-.+|.|+|.++.|+ ...+.||..|+.+ +...+.+++++
T Consensus 155 ~~~~~lG~al~~~i~~---~~~rV--------~iIaSG~lSH~L~~~~-~~~p~g~~~~a~~f~~~~D~~v~~~l~~ 219 (282)
T TIGR02298 155 EESRALGEAIRKAIEQ---SDGRV--------AVLASGSLSHRFWDNK-DLAPEGMTTIASEFNRQVDLRVLELWRE 219 (282)
T ss_pred HHHHHHHHHHHHHHHh---cCCCE--------EEEEecccceecCccc-CCCcccCCchhhHHHHHHHHHHHHHHHc
Confidence 4455677788877662 12333 2334588999998775 3346778878665 35555555543
No 85
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=26.06 E-value=2.1e+02 Score=19.89 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHH
Q psy9943 75 VFGPIHDIIEKAKKKKKEKKKKKK 98 (135)
Q Consensus 75 ~a~~l~~~l~qLLee~eeKKkkkk 98 (135)
++..++-.|.+.++..|.+++++-
T Consensus 36 isa~lSwkLaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 36 ISAVLSWKLAKAIEKEEREKKKKA 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666555544443
No 86
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.06 E-value=30 Score=27.66 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.4
Q ss_pred CcccccCC
Q psy9943 1 MSQELLPR 8 (135)
Q Consensus 1 ~LlslLPr 8 (135)
|||.-+|.
T Consensus 4 yll~~~p~ 11 (178)
T PF10278_consen 4 YLLKEPPP 11 (178)
T ss_pred eeccCCCC
Confidence 34444443
No 87
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.39 E-value=3.6e+02 Score=21.64 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.9
Q ss_pred cCCCChhhhhhhhhhHHHHHHHH
Q psy9943 64 FLRLTESGSRKVFGPIHDIIEKA 86 (135)
Q Consensus 64 gLHLt~~GY~k~a~~l~~~l~qL 86 (135)
.++|++.-+..++..|...|.++
T Consensus 113 H~Wldp~~~~~~a~~I~~~L~~~ 135 (266)
T cd01018 113 HIWLSPANAKIMAENIYEALAEL 135 (266)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHh
Confidence 55688999999999998877765
No 88
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=25.38 E-value=1.4e+02 Score=23.96 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCC
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVS 52 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~ 52 (135)
+.-.++|+.|.+.+. ...+|-|+-.|+.++-+
T Consensus 82 ~~~~~~~~~i~~~~~----~G~~Vv~L~~GDP~iys 113 (241)
T PRK05990 82 DFYDTSAEAVAAHLD----AGRDVAVICEGDPFFYG 113 (241)
T ss_pred HHHHHHHHHHHHHHH----CCCeEEEEeCCCcHHHh
Confidence 334778888887776 46789999999888765
No 89
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=25.20 E-value=72 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhhhcCCCCeEEEeCCCCCc
Q psy9943 22 VNKLLKDSLSDRLSDRSRLEFISHDISDL 50 (135)
Q Consensus 22 iN~~L~~~~~~~ls~~~~V~fiDi~~~fl 50 (135)
-|+.|++.+.+.+++...|-+||+++++=
T Consensus 192 S~~~L~~il~~~~~~~~~v~~iDlHTGlG 220 (341)
T PF10994_consen 192 SNRTLREILREHLAGAERVAWIDLHTGLG 220 (341)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEEeCCCCC
Confidence 46666777777777899999999998863
No 90
>PRK13321 pantothenate kinase; Reviewed
Probab=25.12 E-value=52 Score=26.51 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=26.4
Q ss_pred eCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHH
Q psy9943 44 SHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 44 Di~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~ 82 (135)
++.+.|+.++ +...+..+|-+|..-|-..|+.++...
T Consensus 82 ~~~~~~~~~~--~~~~l~~~y~~P~~lG~DR~a~~~aa~ 118 (256)
T PRK13321 82 GIKPLFVGPG--IKTGLKIRYDNPREVGADRIVNAVAAR 118 (256)
T ss_pred CCCeEEECCC--CCCCcccccCChhhccHHHHHHHHHHH
Confidence 3444455442 456677888899999999999988653
No 91
>KOG3794|consensus
Probab=24.90 E-value=1.1e+02 Score=27.80 Aligned_cols=16 Identities=13% Similarity=-0.191 Sum_probs=8.0
Q ss_pred CCcCCCChhhhhhhhh
Q psy9943 62 FDFLRLTESGSRKVFG 77 (135)
Q Consensus 62 ~DgLHLt~~GY~k~a~ 77 (135)
.|+.=|...-|..+++
T Consensus 157 ~d~~~ps~~~~~~i~e 172 (453)
T KOG3794|consen 157 TDGSGPSMPPSELIAE 172 (453)
T ss_pred ccCCCCcccHHHHHHH
Confidence 4444455555555554
No 92
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=24.74 E-value=31 Score=28.81 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHh--hhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHH-HHHHHHHhhH
Q psy9943 14 PLWEKFFAVNKLLKDSL--SDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIH-DIIEKAKKKK 90 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~--~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~-~~l~qLLee~ 90 (135)
..|+.|.+||.+|.+-- .-++..+.|..|.-.++.++|.+|...+. ..||+=...|.. |-+.+|++..
T Consensus 72 ~IRdLNDeINkL~rEK~~WE~rI~~LGG~dy~~~~~~~~d~~G~~~~~---------~~GyrYFGrAkeLPgVkeL~e~~ 142 (255)
T PF06246_consen 72 QIRDLNDEINKLIREKRHWERRIKELGGPDYRRSGPKMLDSEGREVPG---------GRGYRYFGRAKELPGVKELFEKE 142 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--STTT----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccCcccCC---------CCCceEeehhccCccHHHHHhcc
Confidence 46899999999998631 11222366778888888888887772221 678877666653 4445555555
Q ss_pred HH
Q psy9943 91 KE 92 (135)
Q Consensus 91 ee 92 (135)
+.
T Consensus 143 ~~ 144 (255)
T PF06246_consen 143 KK 144 (255)
T ss_dssp --
T ss_pred cc
Confidence 54
No 93
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. A subfamily of SAICAR synthetases represented by the Thermotoga maritima (Tm) enzyme and E. coli PurC. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=24.32 E-value=1.9e+02 Score=23.74 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC-cCCCCc--cCCCCCCC---------cCCCChhhhhhhhhhHHHH
Q psy9943 15 LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISD-LVSDDR--ISAGDFFD---------FLRLTESGSRKVFGPIHDI 82 (135)
Q Consensus 15 ~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~f-l~~dG~--Ls~~~m~D---------gLHLt~~GY~k~a~~l~~~ 82 (135)
+++...+||+.|.+++. ..++.++|.-=-| ++.||. |..++++| +.+|-=+-|+.|.+.+...
T Consensus 146 i~~~~l~v~~~l~~~~~-----~~gl~LvD~K~EFG~~~~g~ivL~DEispDs~R~w~~~~~~~lDK~~~R~~~~~~~~~ 220 (230)
T cd01415 146 IKELALKINEVLSEFFA-----EIGIILVDFKLEFGRDKDGEIVLADEISPDTCRLWDKETGEKLDKDRFRRDLGDVIEA 220 (230)
T ss_pred HHHHHHHHHHHHHHHHH-----HCCCEEEEEeEEeeEcCCCCEEEEEeeCCCccccccCCCCcccCHHHHhcccchHHHH
Confidence 46667778999998877 6678888875322 244565 34445555 3444555677777766665
Q ss_pred HHHHHhh
Q psy9943 83 IEKAKKK 89 (135)
Q Consensus 83 l~qLLee 89 (135)
..++++.
T Consensus 221 Y~~v~~r 227 (230)
T cd01415 221 YEEVLKR 227 (230)
T ss_pred HHHHHHH
Confidence 5666554
No 94
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.16 E-value=3e+02 Score=22.51 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.4
Q ss_pred cCCCChhhhhhhhhhHHHHHHHH
Q psy9943 64 FLRLTESGSRKVFGPIHDIIEKA 86 (135)
Q Consensus 64 gLHLt~~GY~k~a~~l~~~l~qL 86 (135)
.+++++.-+..++..|...|.++
T Consensus 118 H~Wldp~~~~~~a~~Ia~~L~~~ 140 (287)
T cd01137 118 HAWMSPKNAIIYVKNIAKALSEA 140 (287)
T ss_pred CcCcCHHHHHHHHHHHHHHHHHH
Confidence 45677999999999988877665
No 95
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=23.88 E-value=67 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=17.9
Q ss_pred CeEEEeCCCCCc---CCCCccCCCCC-CC
Q psy9943 39 RLEFISHDISDL---VSDDRISAGDF-FD 63 (135)
Q Consensus 39 ~V~fiDi~~~fl---~~dG~Ls~~~m-~D 63 (135)
..++|||.++|+ +++|.+..++- ||
T Consensus 5 eYqLidI~dGflsLm~e~G~~k~DlklP~ 33 (69)
T cd04468 5 EYQLIDIDDGFLSLMDDDGETREDLKLPE 33 (69)
T ss_pred eEEEEeecCCeEEEEcCCCCcccCCcCCc
Confidence 357889966665 58899887773 54
No 96
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=23.49 E-value=83 Score=26.58 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhcCCCCeEEEeCCCCCcC
Q psy9943 22 VNKLLKDSLSDRLSDRSRLEFISHDISDLV 51 (135)
Q Consensus 22 iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~ 51 (135)
-|..|++.+...+++...|-+||+++++=-
T Consensus 191 S~~~L~~il~~~~~~~~~v~~iD~HTGlGp 220 (283)
T cd06233 191 SNRTLREILRRHLAGAERVAWIDVHTGLGP 220 (283)
T ss_pred HHHHHHHHHHHhcccccEEEEEEeCCCCCC
Confidence 466666666666668899999999988743
No 97
>PHA00002 A DNA replication initiation protein gpA
Probab=23.45 E-value=2.3e+02 Score=25.68 Aligned_cols=30 Identities=7% Similarity=-0.132 Sum_probs=21.9
Q ss_pred CCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhh
Q psy9943 38 SRLEFISHDISDLVSDDRISAGDFFDFLRLTESG 71 (135)
Q Consensus 38 ~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~G 71 (135)
.++.+ |-|+-|++ |. ++.+.+|-|||+.+=
T Consensus 56 ~gi~~-dngd~~~~--gh-~p~~~p~El~L~DEi 85 (515)
T PHA00002 56 NGIRR-DNGDFWMN--GH-LPQRAPEELHLDDEI 85 (515)
T ss_pred ccccc-cCCcceec--CC-CccCCchhhccchHH
Confidence 45666 88888887 43 456669999998763
No 98
>TIGR00331 hrcA heat shock gene repressor HrcA. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene.
Probab=23.43 E-value=53 Score=28.02 Aligned_cols=31 Identities=16% Similarity=-0.073 Sum_probs=26.2
Q ss_pred cCCCCccCCCCCCCcCCCChhhhhhhhhhHH
Q psy9943 50 LVSDDRISAGDFFDFLRLTESGSRKVFGPIH 80 (135)
Q Consensus 50 l~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~ 80 (135)
|.+.|.|...-+.=|.-||+.||+-+.+.+.
T Consensus 47 Le~~G~l~~~h~sagript~kGYR~yv~~~~ 77 (337)
T TIGR00331 47 LEDLGFIEKPHTSSGRIPTDKGYRYYVDHLL 77 (337)
T ss_pred HHHCCCccCCCCCCCcCcChhHHHHHHHHhc
Confidence 4557999999999999999999999887654
No 99
>PF12886 TORC_C: Transducer of regulated CREB activity, C terminus; InterPro: IPR024785 This entry represents the C-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The C-terminal domain is negatively charged, resembling transcription activation domains, and experimental studies indicate that it may play a role in activation of transcription [].
Probab=23.39 E-value=64 Score=22.58 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=26.5
Q ss_pred hhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhh
Q psy9943 33 RLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGP 78 (135)
Q Consensus 33 ~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~ 78 (135)
+|++.+.+.| |....|--+|+---..+..||||.-....-.++++
T Consensus 22 ala~v~~~~f-d~d~~F~~dd~L~l~pl~ldgLqMLsDp~~~l~Dp 66 (77)
T PF12886_consen 22 ALAGVPEFSF-DADTLFPLDDELRLDPLDLDGLQMLSDPDMMLADP 66 (77)
T ss_pred hhccCCccee-cccccccchhhhccCccchhhhhcccCCCccccCc
Confidence 4556788777 66555655442223556689998444444555553
No 100
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=23.23 E-value=1.1e+02 Score=21.75 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=25.9
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCC
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDI 47 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~ 47 (135)
|++-+|=.|..|+..++ ++.+-+ ++...|++.-.+++||++.
T Consensus 4 ~~LrLyvag~~p~S~~a-i~nl~~----i~e~~l~g~y~LeVIDv~~ 45 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRA-LKTLKN----ILETEFQGVYALKVIDVLK 45 (87)
T ss_pred EEEEEEEeCCCchHHHH-HHHHHH----HHHHhcCCceEEEEEEccc
Confidence 34566667777744432 333444 4444455788899999984
No 101
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=22.86 E-value=51 Score=24.51 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=7.6
Q ss_pred cccccC-CCCCCC
Q psy9943 2 SQELLP-RGRNRN 13 (135)
Q Consensus 2 LlslLP-rg~~pn 13 (135)
.++||| ||.--|
T Consensus 23 ~qailPLrGKiLN 35 (114)
T cd03366 23 FQAILPLRGKILN 35 (114)
T ss_pred ceEEeccCCccch
Confidence 378899 455445
No 102
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6.3.2.6 from EC) (SAICAR synthetase) catalyzes the seventh step in the de novo purine biosynthetic pathway; the ATP-dependent conversion of 5'-phosphoribosyl-5-aminoimidazole-4-carboxylic acid and aspartic acid to SAICAR []. In bacteria (purC), fungi (ADE1) and plants (Pur7), SAICAR synthetase is a monofunctional protein; in animals it is the N-terminal domain of a bifunctional enzyme that also catalyse phosphoribosylaminoimidazole carboxylase (AIRC) activity (see IPR000031 from INTERPRO).; GO: 0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity, 0006164 purine nucleotide biosynthetic process; PDB: 2GQS_A 2GQR_B 3KRE_A 3R9R_A 2H31_A 1A48_A 1OBD_A 2CNV_A 1OBG_A 2CNU_A ....
Probab=22.40 E-value=96 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC-cCCCCcc--CCCCC-CCcCC
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISD-LVSDDRI--SAGDF-FDFLR 66 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~f-l~~dG~L--s~~~m-~DgLH 66 (135)
.+++...+||+.|.+++. .-++.++|.-=-| .+++|.| ..++. +|...
T Consensus 154 ~i~~~a~~i~~~l~~~~~-----~~Gl~LvD~K~EFG~~~~G~ivL~DEi~TpDs~R 205 (248)
T PF01259_consen 154 EIREIALKINEILEEYFA-----KRGLILVDFKLEFGRDEDGEIVLADEISTPDSSR 205 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HTTEEEEEEEEEEEEETTTEEEEES--SSTTTEE
T ss_pred HHHHHHHHHHHHHHHHHH-----HCCCEEEeeeEEEEecCCCcEEEEEEecCCCcee
Confidence 456677789999999887 5678888876444 5666663 44454 66443
No 103
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=22.19 E-value=82 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=23.8
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHhh
Q psy9943 3 QELLPRGRNRNPLWEKFFAVNKLLKDSLS 31 (135)
Q Consensus 3 lslLPrg~~pn~~r~~i~~iN~~L~~~~~ 31 (135)
.|+.|-++....+|+....+|+.|+..++
T Consensus 128 ~g~vp~~~~~r~~~d~lG~lnq~la~~ad 156 (170)
T PRK05800 128 MGIVPEYRLGRHFRDIAGRLNQQLAAAAD 156 (170)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 46777776666789999999999998876
No 104
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=22.10 E-value=3.2e+02 Score=22.61 Aligned_cols=61 Identities=11% Similarity=-0.052 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHHHHH
Q psy9943 12 RNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKA 86 (135)
Q Consensus 12 pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l~qL 86 (135)
++.+++.+..+.+++.++-. ....+.+||+|.+|--+ ++.+.- +-.+..+++.|.+.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~----~g~~~~~idiGGG~~~~-------~~~~~~---~~~~~~~~~~i~~~~~~~ 243 (373)
T cd06828 183 LEPFVEAAEKLLDLAAELRE----LGIDLEFLDLGGGLGIP-------YRDEDE---PLDIEEYAEAIAEALKEL 243 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCCCCEEEeCCCCCcc-------cCCCCC---CCCHHHHHHHHHHHHHHH
Confidence 34566667776666665432 24578999999888321 111111 123455666666665544
No 105
>PRK09301 circadian clock protein KaiB; Provisional
Probab=21.75 E-value=1.2e+02 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=25.9
Q ss_pred CcccccCCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCC
Q psy9943 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDI 47 (135)
Q Consensus 1 ~LlslLPrg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~ 47 (135)
|++-+|=.|..|+..++ ++.+-+.++ ..|++.-.+++||++.
T Consensus 7 ~~LrLyVag~tp~S~~a-i~nL~~icE----~~l~g~y~LeVIDv~~ 48 (103)
T PRK09301 7 YILKLYVAGNTPNSVRA-LKTLKNILE----TEFKGVYALKVIDVLK 48 (103)
T ss_pred EEEEEEEeCCCchHHHH-HHHHHHHHH----HhcCCceEEEEEEccc
Confidence 35566667777744332 444444444 4455778899999983
No 106
>cd03748 Ntn_PGA Penicillin G acylase (PGA) is the key enzyme in the industrial production of beta-lactam antibiotics. PGA hydrolyzes the side chain of penicillin G and related beta-lactam antibiotics releasing 6-amino penicillanic acid (6-APA), a building block in the production of semisynthetic penicillins. PGA is widely distributed among microorganisms, including bacteria, yeast and filamentous fungi but it's in vivo role remains unclear.
Probab=21.64 E-value=56 Score=29.53 Aligned_cols=23 Identities=9% Similarity=-0.142 Sum_probs=19.7
Q ss_pred CCeEEEeCC----CCCcCCCCccCCCC
Q psy9943 38 SRLEFISHD----ISDLVSDDRISAGD 60 (135)
Q Consensus 38 ~~V~fiDi~----~~fl~~dG~Ls~~~ 60 (135)
.+|+++||- ++|+.+||+.+++|
T Consensus 430 ~~~~~~~~~~pgq~g~~~~~g~~~~h~ 456 (488)
T cd03748 430 KGVSACDVVPPGQSGFVAPDGTPSPHY 456 (488)
T ss_pred CCcceEEeeCCCcccccCCCCCcCcch
Confidence 467777876 89999999999997
No 107
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=21.39 E-value=68 Score=28.71 Aligned_cols=43 Identities=16% Similarity=-0.178 Sum_probs=26.3
Q ss_pred hcCCCCeEEEeCCC------CCcCCCCccCCCC--CCCcCCCChhhhhhhhh
Q psy9943 34 LSDRSRLEFISHDI------SDLVSDDRISAGD--FFDFLRLTESGSRKVFG 77 (135)
Q Consensus 34 ls~~~~V~fiDi~~------~fl~~dG~Ls~~~--m~DgLHLt~~GY~k~a~ 77 (135)
.|.++.+.-.|+.. .|..-.+--+..+ +.||||+++.| ..|-.
T Consensus 172 ~~~L~q~f~hDF~~~~~~~~~F~~~g~~~s~~~~~tddGl~m~a~G-g~w~~ 222 (399)
T PF07622_consen 172 ADRLPQSFEHDFRKAAVDARSFNQIGGDWSKPLMATDDGLRMTAPG-GPWTQ 222 (399)
T ss_pred HhhccceeeeecccccCchhhhhhhcCccCCCceecCCceEEecCC-CCccc
Confidence 34677888888775 3333333122233 47999999999 55543
No 108
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.10 E-value=1.3e+02 Score=18.54 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=19.5
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHhh
Q psy9943 4 ELLPRGRNRNPLWEKFFAVNKLLKDSLS 31 (135)
Q Consensus 4 slLPrg~~pn~~r~~i~~iN~~L~~~~~ 31 (135)
.+++.|..++..+....++.+.+.+.+.
T Consensus 6 ~i~~~grt~eqK~~l~~~it~~l~~~lg 33 (63)
T TIGR00013 6 YILKEGRTDEQKRQLIEGVTEAMAETLG 33 (63)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3455666666677777788888887764
No 109
>PF15454 LAMTOR: Late endosomal/lysosomal adaptor and MAPK and MTOR activator
Probab=21.00 E-value=1.7e+02 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhcCCCCeEEEeCCC
Q psy9943 20 FAVNKLLKDSLSDRLSDRSRLEFISHDI 47 (135)
Q Consensus 20 ~~iN~~L~~~~~~~ls~~~~V~fiDi~~ 47 (135)
+++|.++++..+ ..|||+.
T Consensus 39 ~aL~~Iv~~Ts~---------nlIDIs~ 57 (76)
T PF15454_consen 39 EALNRIVQETSD---------NLIDISA 57 (76)
T ss_pred HHHHHHHHHHhh---------heeeecc
Confidence 889999998766 6788873
No 110
>PRK05354 arginine decarboxylase; Provisional
Probab=20.93 E-value=3.3e+02 Score=25.56 Aligned_cols=37 Identities=3% Similarity=-0.027 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC-cCCCCc
Q psy9943 15 LWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISD-LVSDDR 55 (135)
Q Consensus 15 ~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~f-l~~dG~ 55 (135)
+++.+.++-+.+.++.. ....+.|||+|.+| ++-+|.
T Consensus 263 ~~~al~e~~~~~~eL~~----~G~~l~~LDIGGGlgV~Y~g~ 300 (634)
T PRK05354 263 IKTAVREAARFYVELRK----LGAPIQYLDVGGGLGVDYDGT 300 (634)
T ss_pred HHHHHHHHHHHHHHHHH----cCCCCCEEEeCCCcCcCCCCC
Confidence 34444444444444433 12459999999998 444554
No 111
>KOG1611|consensus
Probab=20.84 E-value=1.9e+02 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCC-CccCCCCCCC
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSD-DRISAGDFFD 63 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~d-G~Ls~~~m~D 63 (135)
.||.-..++|..-.++.- .|. ..+|-.+.++|+||+-| |.=+..++++
T Consensus 170 AYrmSKaAlN~f~ksls~-dL~-~~~ilv~sihPGwV~TDMgg~~a~ltve 218 (249)
T KOG1611|consen 170 AYRMSKAALNMFAKSLSV-DLK-DDHILVVSIHPGWVQTDMGGKKAALTVE 218 (249)
T ss_pred hhHhhHHHHHHHHHHhhh-hhc-CCcEEEEEecCCeEEcCCCCCCcccchh
Confidence 578889999999887654 232 56899999999999998 6655555554
No 112
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=20.65 E-value=74 Score=24.37 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCC------cCCCChhhhhhhhhhHHHHHHHHH
Q psy9943 17 EKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFD------FLRLTESGSRKVFGPIHDIIEKAK 87 (135)
Q Consensus 17 ~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~D------gLHLt~~GY~k~a~~l~~~l~qLL 87 (135)
+.-.++..++... ..++.+|+++ ++++|.++++.- .|.|-+.|+-..|...-..++++.
T Consensus 68 ev~~Ai~KA~~~A-------kknl~~V~~~-----~~~TI~~~v~gk~gs~~V~l~Pap~G~Gi~a~~~i~~vlela 132 (143)
T CHL00138 68 DVQNAVKKAVTDA-------KKNLITIPLT-----KSNSIPHNITGIFGAAKVILRPSAPGSGVIAGGSVRIVLELA 132 (143)
T ss_pred hHHHHHHHHHHHH-------HhCeEEEEcC-----CCCeEeeEEEEEEeeEEEEEEECCCCCcEEECcHHHHHHHHc
Confidence 3444555555433 4578899966 556787777632 466899999999998877777764
No 113
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.38 E-value=1.8e+02 Score=22.45 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCC-CChhhhhhhhhhHHHHHHH
Q psy9943 7 PRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLR-LTESGSRKVFGPIHDIIEK 85 (135)
Q Consensus 7 Prg~~pn~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLH-Lt~~GY~k~a~~l~~~l~q 85 (135)
|+.+++..+|+.|-.+-...-..+. ... + ...||-+ .+.+||+-+-..+.-+|..
T Consensus 35 ~~~~ss~~LR~QILdLSkrYVKaLA----eEn---------------~-----~~~dgp~~~smagYaDLKktiAVLLdd 90 (138)
T PF15027_consen 35 PRHQSSAELREQILDLSKRYVKALA----EEN---------------K-----NVVDGPYGASMAGYADLKKTIAVLLDD 90 (138)
T ss_pred CCccChHHHHHHHHHHHHHHHHHHH----HHc---------------C-----CCCCCCcchhhHHHHHHhhhhhhhhhH
Confidence 6777777899988887655443332 111 1 1123322 5678997766666655555
Q ss_pred HHhh
Q psy9943 86 AKKK 89 (135)
Q Consensus 86 LLee 89 (135)
+|++
T Consensus 91 iLqR 94 (138)
T PF15027_consen 91 ILQR 94 (138)
T ss_pred HHHH
Confidence 5543
No 114
>PRK11037 hypothetical protein; Provisional
Probab=20.37 E-value=1.8e+02 Score=20.61 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC-------CCeEEEeCCCCCcCCCCc
Q psy9943 16 WEKFFAVNKLLKDSLSDRLSDR-------SRLEFISHDISDLVSDDR 55 (135)
Q Consensus 16 r~~i~~iN~~L~~~~~~~ls~~-------~~V~fiDi~~~fl~~dG~ 55 (135)
.+.....|++|++. +.+|.++ .+-.+|-=|..|+|++|-
T Consensus 11 ~~LL~~AN~iI~~H-edyi~GM~a~~Veqk~~VLVFkGeyFLD~~Gl 56 (83)
T PRK11037 11 ETLLLEANKIIREH-EDYLAGMRATDVEQKNGVLVFRGEYFLDEQGL 56 (83)
T ss_pred HHHHHHHHHHHHhh-HHHhcccccceeeeeCCEEEEecceeecCCCC
Confidence 45677789999975 3344443 223355567778887664
No 115
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=20.06 E-value=2.2e+02 Score=23.70 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCcCCCCccCCCCCCCcCCCChhhhhhhhhhHHHHH
Q psy9943 14 PLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDII 83 (135)
Q Consensus 14 ~~r~~i~~iN~~L~~~~~~~ls~~~~V~fiDi~~~fl~~dG~Ls~~~m~DgLHLt~~GY~k~a~~l~~~l 83 (135)
.+++...+|=+.+..+ .|.|+...++..|+|-.|... + .|...+|..|...|
T Consensus 74 ~y~~~s~~i~~~l~~~-------~~~ve~~s~De~~ldvt~~~~----~-------~~~~~la~~i~~~i 125 (344)
T cd01700 74 LYGDMSRRIMSILERF-------SPDVEVYSIDESFLDLTGSLR----F-------GDLEELARKIRRRI 125 (344)
T ss_pred HHHHHHHHHHHHHHhc-------CCcceEeecchhhccCcCCCC----C-------CCHHHHHHHHHHHH
Confidence 3444444444444433 567999999999999988765 2 23455666555544
Done!