RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9943
(135 letters)
>gnl|CDD|238858 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like
subfamily of SGNH-hydrolases. Platelet-activating factor
(PAF) and PAF-AH are key players in inflammation and in
atherosclerosis. PAF-AH is a calcium independent
phospholipase A2 which exhibits strong substrate
specificity towards PAF, hydrolyzing an acetyl ester at
the sn-2 position. PAF-AH also degrades a family of
oxidized PAF-like phospholipids with short sn-2
residues. In addition, PAF and PAF-AH are associated
with neural migration and mammalian reproduction.
Length = 214
Score = 59.6 bits (145), Expect = 8e-12
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 5 LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLV--SDDRISAGDFF 62
LLPRG+N NPL E+ VN+LL R + F+ DI SD IS D
Sbjct: 136 LLPRGQNPNPLRERNAQVNRLLAV----RYDGLPNVTFL--DIDKGFVQSDGTISHHDMP 189
Query: 63 DFLRLTESGSRKVFGPIHDIIEKA 86
D+L LT +G RK +H + +
Sbjct: 190 DYLHLTAAGYRKWADALHPTLARL 213
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 53.4 bits (129), Expect = 2e-09
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ K KK K+ +KK K+K+K K KK+ + K K++K +
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 53.4 bits (129), Expect = 3e-09
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KK K KK K+ +KK+K K+K K KK+ + K K+ K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 53.4 bits (129), Expect = 3e-09
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K ++K K KK K+ KK+K+K+K K KK+ + KN K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 52.6 bits (127), Expect = 6e-09
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK K +K K+ ++K+K+K K K KK+ + K K++K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 52.3 bits (126), Expect = 7e-09
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KA +KK K KK K+ +K++K+K+K K KK+ + K K +
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 51.9 bits (125), Expect = 9e-09
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+I++ + K K +KK K KK K+ +KK+K+K+K K KK+ K I
Sbjct: 372 VIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423
Score = 51.5 bits (124), Expect = 1e-08
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KK + KK KR +KK+++K+K K KK+ + K K +
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Score = 51.5 bits (124), Expect = 1e-08
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K +KK K KK ++ +KK+K+K+K K KK+ ++ I K
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 46.5 bits (111), Expect = 7e-07
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+KK ++ +KK+K+++K K +K+ + K K++K +
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 41.9 bits (99), Expect = 3e-05
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
+K P ++ K +KK+++K+K K K++ + + K++K
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 35.3 bits (82), Expect = 0.005
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
S+KV + EK K+K K KK+ + K K+++
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.9 bits (81), Expect = 0.006
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
L E+ + G I IE+ K + + + K K +KK K KK K+ +KK+K+K
Sbjct: 348 LVEAHDHLLLGKIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEK 407
Query: 127 NKNKI 131
K K+
Sbjct: 408 EKPKV 412
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 47.8 bits (114), Expect = 3e-07
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKK-------RKKKKKKKKKKKKKKK 122
S R EKAKK KK K+++ KK R +KK K K KK +
Sbjct: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR 785
Query: 123 KKKKNKNKIIKI 134
K KK K KI
Sbjct: 786 KAKKPSAKTQKI 797
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
EK K K KK +K K+ K +K K K+ KKK
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 38.6 bits (90), Expect = 4e-04
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+KK + K KK RK KK K +K K K+ KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 38.6 bits (90), Expect = 4e-04
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
KK K + KK +K KK + +K K K+ KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 38.2 bits (89), Expect = 5e-04
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ +KK K K KK +K KK K +K K K+ KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 46.5 bits (111), Expect = 7e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
IE+ K+K + KKK++++K +K++KKKK+KKK KK+KKK +K
Sbjct: 372 IEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 1e-06
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K+K K KKK++ KK +KRKKKKK+KKK KK+KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 43.8 bits (104), Expect = 6e-06
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 4/52 (7%)
Query: 81 DIIEKAKKKKKEKKKK----KKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ E+ K+ +E K+K KKKR++KK +K+KKKKK+KKK KK+KKK K
Sbjct: 363 ELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 43.0 bits (102), Expect = 1e-05
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
I +I EK K K+K+++KK +++KKKK++KKK KK+KKK +K
Sbjct: 372 IEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 41.1 bits (97), Expect = 6e-05
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I D +++ K+ E+ K+K K KKK+ +KK +K+KKKKK+KKK KK K K
Sbjct: 360 IGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 40.0 bits (94), Expect = 1e-04
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I ++ K++ ++ ++ K+K K K+K+++KK +K+KKKKK+KKK K +
Sbjct: 359 YIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 45.2 bits (108), Expect = 2e-06
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
EK +K + K KK K +K K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.9 bits (102), Expect = 1e-05
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ + EK + K K+ K +K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.5 bits (101), Expect = 2e-05
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + +K + K KK K +K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 42.1 bits (100), Expect = 2e-05
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
A+K +K + + K+ K +K K++ +K K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 41.7 bits (99), Expect = 4e-05
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K EK + K KK K +K K++ + K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 39.8 bits (94), Expect = 2e-04
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+E+A + EK +K + K KK K +K K++ K
Sbjct: 807 VEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 34.0 bits (79), Expect = 0.015
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K + K KK K +K K + +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVA 851
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.5 bits (106), Expect = 4e-06
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 50 LVSDDRISAGDFFDFLRLTE------SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKK 103
+ + A FL LTE +GS+K I I+EKA+KK++E+KK+KKKK
Sbjct: 377 IFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Query: 104 KKKRKKKKKKKKKKKKKKKKKKK 126
KK++++++++K+KK+++K++++
Sbjct: 437 GKKKEEEEEEEKEKKEEEKEEEE 459
Score = 38.0 bits (89), Expect = 7e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K+ KK KK +K +K+++++KK+KKKK KKK+ + + K
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 31.8 bits (73), Expect = 0.092
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
KK KK KK +K +KK++++KK+KKKK K +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 29.5 bits (67), Expect = 0.54
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
++E + K+ KK +K +K +KK++++KK+KKK K
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 28.7 bits (65), Expect = 0.84
Identities = 13/47 (27%), Positives = 32/47 (68%)
Query: 69 ESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
E + G + E+ +K+KKE++K+++++ +++K ++++KKKK
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 27.6 bits (62), Expect = 2.4
Identities = 11/35 (31%), Positives = 31/35 (88%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
E+ ++++KEKK+++K++ +++ + +K+++++KKKK
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 41.5 bits (98), Expect = 3e-05
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K + ++ E++ KK++ +K+K ++++K K K +KK+K + +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+AK K + ++ +++ K+++ K+K ++++K K K +KK K +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 39.1 bits (92), Expect = 2e-04
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
E+ KK++ +K+K R+++K + K +KK+K + +K + +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+E A+K+ +E K K + +R +++ +K++ +K+K ++++K K K
Sbjct: 96 VEHARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAP 143
Score = 38.8 bits (91), Expect = 3e-04
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KAK + + +++ KK+ +K K ++++K K K +KK+K + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 37.2 bits (87), Expect = 0.001
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + KK+E +K+K ++++K K K +KK+K + +K + ++
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Score = 33.7 bits (78), Expect = 0.014
Identities = 8/50 (16%), Positives = 28/50 (56%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K + +++K +++++ K K +KK+K + +K + + + +++
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 33.4 bits (77), Expect = 0.018
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K+K +++K K K +KK++ + +K + + + + +K+
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ ++++K K K +KKRK + ++ + + + + K K K
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVKAGK 179
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 41.1 bits (97), Expect = 5e-05
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 69 ESGSRK------VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
ESG RK P+ +I E+ +++ +E+ K+ + +++ + KK +KK KK KK
Sbjct: 47 ESGERKSAVDKLAMKPLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKG 106
Query: 123 KKKKNKNKIIK 133
K ++ + +
Sbjct: 107 KDEEALAEELL 117
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 40.6 bits (96), Expect = 8e-05
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K KK K++ + K+ + K +R+++ +++++KKKKK+K + + + I
Sbjct: 129 KKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVI 178
Score = 33.7 bits (78), Expect = 0.021
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ A+ K+ K K +++R+ +++R+KKKKK+K +K ++
Sbjct: 136 KAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPRE 175
Score = 26.7 bits (60), Expect = 4.6
Identities = 11/64 (17%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKK-----KKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
++++ +++EK K+ E K +++ RK++ KR+ +++ K + ++ + +
Sbjct: 10 AKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAE 69
Query: 127 NKNK 130
+ K
Sbjct: 70 EEAK 73
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 40.3 bits (95), Expect = 1e-04
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++KK +KK++K ++K +K+ +K KKK + KK K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 39.9 bits (94), Expect = 1e-04
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
A++KK KK++K +K+ +K++ +K KKK + KK K +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 39.9 bits (94), Expect = 1e-04
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ K +KK++K +KK ++++ +K KKK + KK K + K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 38.0 bits (89), Expect = 7e-04
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ +K +K +K+ +K++ +K KKK + KK K + KK
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 37.6 bits (88), Expect = 8e-04
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KK++K +KK +K++ +K +KK + KK K + KK
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 37.6 bits (88), Expect = 0.001
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KK +K+++K +KK K++ ++ KKK + KK K K
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 37.2 bits (87), Expect = 0.001
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ K++K EKK +K++ K K+K + KK K + KK +
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KK RKK++K +KK +K++ +K KKK + K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 34.5 bits (80), Expect = 0.011
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KK +K+++K ++K +K++ +K KKK + K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 33.8 bits (78), Expect = 0.017
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ K ++K ++K +K++ ++ KK+ + KK K + KK
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 32.2 bits (74), Expect = 0.053
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++++ E +RKK +K+++K +KK +K++ +K K K +
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 32.2 bits (74), Expect = 0.056
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
HD A+ +++E + ++KK RKK++K +KK +K++ +K K K
Sbjct: 388 HDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKK 438
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 38.6 bits (90), Expect = 3e-04
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+KK K KK+ K K K KKK K K KK K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 37.5 bits (87), Expect = 0.001
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
++K K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.7 bits (85), Expect = 0.002
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K +KK K KKK K K + KKK K K KK KK+
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.3 bits (84), Expect = 0.003
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
EKK K KKK K + K KKK K K KK KK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.0 bits (83), Expect = 0.003
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+K+ K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 36.0 bits (83), Expect = 0.004
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I +I K K +KK K +KK K K K KKK K K KK K +
Sbjct: 732 IDAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 32.9 bits (75), Expect = 0.036
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+KK K K+K + K K KKK K K KK K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.2 bits (68), Expect = 0.34
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I + I+ K K +K+ K KK+ K K K KKK K K+K
Sbjct: 728 IGNSIDAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
Score = 29.4 bits (66), Expect = 0.68
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KK K +KK K K K KKK K K+K
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTT 780
Score = 28.6 bits (64), Expect = 0.96
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
P + KK K K K +KK K + KK KK+
Sbjct: 746 PYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 28.6 bits (64), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+KK + KKK K K K KKK+K K K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 28.2 bits (63), Expect = 1.4
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+KK K KKK K K K KKK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 37.5 bits (88), Expect = 4e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+E A KKE K +K ++K +K + K +KKK KK++ K +
Sbjct: 58 LEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K++ K +K KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KK+ K K +KK +K K K +KKK KK++ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
+++K + K EK +KK +K K K ++KK KK++ K +
Sbjct: 59 EAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 32.9 bits (76), Expect = 0.022
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KK+ K +K +KK +K K K +KKK K + K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 32.9 bits (76), Expect = 0.024
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK+ K +K +KK +K K K +KKK KK+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 37.0 bits (86), Expect = 7e-04
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++ + K + K KKK++ K K +K+K K + KK K +K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 37.0 bits (86), Expect = 9e-04
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
D E+ + + + K+KKKR+ K + +K+K K + KK K K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 35.1 bits (81), Expect = 0.004
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E + ++E + K + K+KKKR+ K K +K+K K + KK +K
Sbjct: 104 ESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 32.0 bits (73), Expect = 0.052
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ + E++ + K + K+K+K++ K K +K+K K + K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 31.3 bits (71), Expect = 0.076
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ + + K + K+KKK++ K K +++K K + KK K K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 29.3 bits (66), Expect = 0.40
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
D E+ +++ + +++ + K + K+KKK++ K K +K+K K + K K
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 28.2 bits (63), Expect = 1.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+E + +++ + K + K+KKK++ K K +K+K K + K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 26.3 bits (58), Expect = 4.5
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ + +++ + K K+KKK++ K K +K+K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 37.5 bits (88), Expect = 8e-04
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ ++ E+ K+ K+E K K++ K K +KKK+K++ K K K K
Sbjct: 42 VTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
++ A KKE K K ++KK+K+ K K K K +
Sbjct: 56 LKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KE K++ K KK+ K K +KKK+K++ K K K+K
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.7 bits (78), Expect = 0.016
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
++ K++ K KK+ + K +KKK+K++ K K K K +
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 33.7 bits (78), Expect = 0.016
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
+++K + K K +KKK+K++ K + K K +
Sbjct: 58 AALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 33.3 bits (77), Expect = 0.027
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KK+ K K +KKK+K++ K K K+K ++
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 28.3 bits (64), Expect = 1.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
++ K+ K++ + +K+ K K +KKK+K++ K K
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+ E AK+++ + K K K + +K K KKK+KKKKK K KK +++
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 36.2 bits (84), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
I K ++ K + K K K RK K K+K+KKKKK K KK +K + +
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Score = 35.0 bits (81), Expect = 0.007
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
E+ ++K+ K+++ K K K K + +K K KKK+KKKKK K +
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196
Score = 34.6 bits (80), Expect = 0.011
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+ +E+ + K+++ K K K + K ++ K KKK+KKKKK K K + +
Sbjct: 1144 QEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199
Score = 33.5 bits (77), Expect = 0.024
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+E+ ++ ++++ K+++ + K K + K +K K KKK+KKKKK + +K K +
Sbjct: 1141 LEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
Score = 30.8 bits (70), Expect = 0.23
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E +++++ ++K+ K+++ K K K K K +K K KKK+KKK K+
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
Score = 30.0 bits (68), Expect = 0.32
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+K K K K +K K +KK+KK+KK K KK K+ +
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205
Score = 30.0 bits (68), Expect = 0.39
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KKK KK+ + KKK+K +KK +KKK K + K+ + ++
Sbjct: 1295 ESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Score = 30.0 bits (68), Expect = 0.41
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D E+A ++++E ++K+ K ++ K + K K K +K K KKK+KK K
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 29.2 bits (66), Expect = 0.61
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ K K K +K K K+K+KKK+K K KK K+ + ++ K+
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209
Score = 29.2 bits (66), Expect = 0.63
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ + +KV + + KKKKK +KK +KK+ K + ++ + + ++ +KKK
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360
Query: 126 KNKN 129
+ +
Sbjct: 1361 SDSS 1364
Score = 29.2 bits (66), Expect = 0.66
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 83 IEKAKKKKKEK-KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ K K K K K +K K KKK+K+KKK K KK K + K
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR 1207
Score = 29.2 bits (66), Expect = 0.73
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K K K K KKK++KKKK K KK K+ K K+
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Score = 28.1 bits (63), Expect = 1.5
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 68 TESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
G K K KK+ + K+KKK ++K +KKK K + K+ ++
Sbjct: 1290 KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Score = 27.7 bits (62), Expect = 2.4
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 68 TESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
S + +E + K+KKK +KK +KKK + + K+ + + ++ +
Sbjct: 1299 GSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRK 1358
Query: 128 K 128
K
Sbjct: 1359 K 1359
Score = 27.3 bits (61), Expect = 3.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K KK+ + KKK+K +KK +KKK K + K+ + + +
Sbjct: 1305 PTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPR 1357
Score = 27.3 bits (61), Expect = 3.2
Identities = 21/66 (31%), Positives = 26/66 (39%)
Query: 65 LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
E + + K K KKKEKKKKK K KK K+ +K+K
Sbjct: 1151 EIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLD 1210
Query: 125 KKNKNK 130
K NK
Sbjct: 1211 DKPDNK 1216
Score = 26.9 bits (60), Expect = 4.2
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D K KKK KKR + KKKKK +KK +KKK K + K
Sbjct: 1293 DGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVK 1342
Score = 26.5 bits (59), Expect = 6.3
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KKK KK+ + KKKKK +KK +KKK K +
Sbjct: 1293 DGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQ 1343
Score = 26.2 bits (58), Expect = 7.8
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E K KKK K++ + KKKKK +KK +KKK
Sbjct: 1294 GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVK 1342
Score = 26.2 bits (58), Expect = 8.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + K K+K KK+ + K+KKK +KK +KKK K + K +
Sbjct: 1290 KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASA 1346
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 35.8 bits (83), Expect = 0.003
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
IEK K+K + K K +R KK++ + ++KKK+KK K +++
Sbjct: 350 IEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 34.7 bits (80), Expect = 0.009
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K+K K K K + KK+R + ++KKK+KK K +++ +N
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 33.1 bits (76), Expect = 0.029
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I + EK K + K ++ KK + + R+KKK+KK K +++ +
Sbjct: 350 IEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 32.8 bits (75), Expect = 0.044
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+EK +K KEK K K K ++ +K++ + ++KKK+KK K + +
Sbjct: 346 LEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 32.0 bits (73), Expect = 0.070
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+++ K K K ++ K+++ + ++KKK+KK K +++ +
Sbjct: 353 LKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 32.0 bits (73), Expect = 0.077
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ E+ +K+ ++ K+K K K K + KK++ + ++KKK+KK +
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSER 390
Score = 31.6 bits (72), Expect = 0.082
Identities = 11/48 (22%), Positives = 30/48 (62%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ ++ +K K++ K K + ++ K+++ + ++KKK+KK K ++
Sbjct: 345 ELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRG 392
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+++ +K+ +K K K K K K ++ KK++ + ++K K K K
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAK 387
Score = 27.4 bits (61), Expect = 2.4
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+++ EK+ +K K++ K K K ++ KK++ + ++KK + K
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKA 386
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 35.6 bits (82), Expect = 0.003
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
PI +AK+ KK KK + K K K +K KKK + K ++K
Sbjct: 136 PISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDW 191
Score = 33.7 bits (77), Expect = 0.018
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 81 DIIEKAKKKKKE---KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
++ KK KK K K K +K KKK + K + K K++ + IN
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQDLVIN 199
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 35.7 bits (83), Expect = 0.004
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D E KKK K K K K+K K + KK +KK +
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Score = 35.4 bits (82), Expect = 0.004
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
KK K K K KKK + + KK +KK K + N + I+
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Score = 35.0 bits (81), Expect = 0.006
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
DI +K K + K +KK K KK +KK K N K I +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
Score = 34.6 bits (80), Expect = 0.009
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ KK+ K K K +KK K + KK +KK +K+
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Score = 34.2 bits (79), Expect = 0.014
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ G + D + + +KK K K K KKK K + KK +KK +K
Sbjct: 56 LIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Score = 33.8 bits (78), Expect = 0.018
Identities = 13/49 (26%), Positives = 16/49 (32%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K+K K K K KKK K + KK +KK
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 33.0 bits (76), Expect = 0.029
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KKK + K + KK+ K + KK +KK K+ +
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 32.7 bits (75), Expect = 0.044
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K E KKK + K K KKK K + KK + K
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 32.3 bits (74), Expect = 0.054
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + + + KKK K K K KKK K + KK + KN +
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 32.3 bits (74), Expect = 0.059
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
KA+ +E+ KKK KK K K K K++ K+ + KKK +
Sbjct: 6 TKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQ 51
Score = 31.1 bits (71), Expect = 0.12
Identities = 12/45 (26%), Positives = 13/45 (28%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
A K KKK K + KK KK K K
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Score = 31.1 bits (71), Expect = 0.14
Identities = 14/62 (22%), Positives = 19/62 (30%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
S+K D + + + KKK K K K KKK K +
Sbjct: 44 SKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSS 103
Query: 132 IK 133
K
Sbjct: 104 KK 105
Score = 30.7 bits (70), Expect = 0.17
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + K + + K+K K K K KKK K + +K K
Sbjct: 55 VLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 30.7 bits (70), Expect = 0.17
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ K + KK+ K + K KKK K + K +
Sbjct: 59 LSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 30.3 bits (69), Expect = 0.30
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KA K KKK K + KK +KK K K N+
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQA 130
Score = 29.2 bits (66), Expect = 0.57
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K E +++ K+K KK K K K K++ K+ ++K K +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPE 50
Score = 29.2 bits (66), Expect = 0.61
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KKK K K+ +KK K K +
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Score = 28.4 bits (64), Expect = 1.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ E++ KKK K+ K + K K++ K+ + KKK +I ++
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQV 55
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + + +KK K K K KKK K + + K K N
Sbjct: 59 LSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKN 110
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K + +++ KKK +K K K K K++ K+ + KK + I
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQID 53
Score = 28.0 bits (63), Expect = 1.4
Identities = 10/65 (15%), Positives = 17/65 (26%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+T+ ++ E+ + K + KKK K K K
Sbjct: 32 FITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAP 91
Query: 126 KNKNK 130
K
Sbjct: 92 AKKKL 96
Score = 27.7 bits (62), Expect = 2.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
E+ KKK +K K K + K + K+ + KKK ++ +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 26.9 bits (60), Expect = 4.3
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
AKKK K++ KK KK K K +
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADD 132
Score = 26.1 bits (58), Expect = 8.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ +K KK K K K K++ K + KKK ++ +
Sbjct: 14 EEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 35.5 bits (82), Expect = 0.004
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E KK KK+ K + KK+ +KKKKKKK+KK+ K + + K
Sbjct: 45 EENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 35.5 bits (82), Expect = 0.005
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KKK ++KKKKKK+K++ K + + K K KK KK KKK K K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPK 110
Score = 35.5 bits (82), Expect = 0.005
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+K KKKK++K+ K + + K K KK KK KKK K K + N KI
Sbjct: 68 KKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIA 123
Score = 35.1 bits (81), Expect = 0.006
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+K + KK+ +KKKKKK++KK+ + + + K K KK KK K K K N
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Score = 34.7 bits (80), Expect = 0.007
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ K KK KK+ K + +KK +KKKKKKK+KK+ K + + K
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Score = 34.7 bits (80), Expect = 0.009
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KK++K + KKK +KKKK+KK+KK+ K + + K K K
Sbjct: 53 STKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 33.9 bits (78), Expect = 0.013
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+I+ +++ + KK KK+ K + KKK +KKKKKKK+KK+ K++
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 33.9 bits (78), Expect = 0.015
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ K KK K++ K KKK +KKKKKKK+KK+ K++ +
Sbjct: 46 ENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 33.9 bits (78), Expect = 0.015
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K + K E KKK +KK+KKKK++K+ K + + K K KK K K
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 33.9 bits (78), Expect = 0.016
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
I + + K KK KK K + KKK +KKKKKKK+KK+ K
Sbjct: 37 EILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 32.8 bits (75), Expect = 0.038
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+K K + KKK +KKK+KKK+K++ K + + K K KK K K
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPK 108
Score = 31.2 bits (71), Expect = 0.11
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+++ K KK +K+ K + KKK +KKKKKKK+KK+ K
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Score = 30.8 bits (70), Expect = 0.17
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K+ K + KKK +K+KKKKK KK+ K + + K K KK+K K
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPP 107
Score = 30.1 bits (68), Expect = 0.35
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K K+KK+ K + + K K K+ KK KKK K K + NKI +
Sbjct: 75 KKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAE 124
Score = 29.3 bits (66), Expect = 0.52
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 58 AGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
+ + + L L++ + + + KK K++ K + K+K +KK+KKKK+KK+ K
Sbjct: 25 SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84
Query: 118 KKKKKKKKKNKNK 130
+ + K K
Sbjct: 85 SEGETKLGFKTPK 97
Score = 26.2 bits (58), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K+ +++ + KK KK+ K + KKK +KK K K K
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEK 80
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 35.6 bits (83), Expect = 0.004
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
E++ K+ K + ++K+KKK+KKK KKKK K + KI K+
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKV 424
Score = 32.1 bits (74), Expect = 0.056
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ +++ K + ++K+K+K+KKK KKKK K + K K K+ + + +
Sbjct: 381 LEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELL 436
Score = 29.1 bits (66), Expect = 0.64
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+E+ +++ K+ K + ++K++KK+KKK KKKK K + K
Sbjct: 378 VEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 27.5 bits (62), Expect = 2.1
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
++ E+ +++ K+ K + ++K+KKK+KKK KKKK K KI
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIY 422
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 35.5 bits (82), Expect = 0.004
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ E+ K KK KK K KK KK KK K KK KK
Sbjct: 252 LAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 30.1 bits (68), Expect = 0.31
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
A+++ K KK K+ K KK KK KK K KK K
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAK 295
Score = 28.5 bits (64), Expect = 1.0
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ + K KK KK K KK +K KK K KK KK
Sbjct: 252 LAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 28.1 bits (63), Expect = 1.4
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K K+ KK K KK KK KK K K K
Sbjct: 257 AKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKKA 297
Score = 26.2 bits (58), Expect = 7.1
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E++ K +K KK K KK KK KK K K
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAK 295
Score = 25.8 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++ K KK K+ K KK KK KK K K
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTK 291
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 34.6 bits (80), Expect = 0.005
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K+ E K+ +KK K +K K K K+KK K K+
Sbjct: 3 SSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 33.5 bits (77), Expect = 0.012
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++K+ + K+ +KK K ++ K K K+KK K K+ +++ I K+
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGIPKV 52
Score = 32.7 bits (75), Expect = 0.024
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K+ + KR +KK K +K K K K+KK K+K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRA 43
Score = 31.1 bits (71), Expect = 0.078
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +K+ + K+ +K+ K RK K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRA 43
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 35.3 bits (82), Expect = 0.005
Identities = 14/41 (34%), Positives = 33/41 (80%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
E+A++KK+EKKK++++ + K ++++K ++K++KK+ +K
Sbjct: 282 EEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 32.2 bits (74), Expect = 0.056
Identities = 16/51 (31%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK---KKKKKKKKKKKKKNKNK 130
I KA +++++++ ++KK+ KKK++R+ K K ++++K ++K++KK K
Sbjct: 272 ILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 28.4 bits (64), Expect = 1.00
Identities = 13/56 (23%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 81 DIIEKAKK--KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+++ K K +++E+K K + +++++ ++KK++KKK++++ K K + + K+
Sbjct: 256 EVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKL 311
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.4 bits (82), Expect = 0.005
Identities = 16/42 (38%), Positives = 32/42 (76%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+E +++K++K K++++ +K KK+++KKKK+ +K K KI
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 34.2 bits (79), Expect = 0.014
Identities = 15/53 (28%), Positives = 36/53 (67%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ +K + ++++++K+ K++K+ +K KK+++KKKK+ +K +K K + K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFK 598
Score = 32.7 bits (75), Expect = 0.044
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K +K++ +++K +K+ +++K+ +K KK+++KKKK+ K + KI
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.8 bits (80), Expect = 0.008
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
P + +K K EKK KK K + K K + K K K + K KK K K
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 34.4 bits (79), Expect = 0.010
Identities = 20/53 (37%), Positives = 23/53 (43%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E K KEK K +KK +K K K K K K K K K + K KK
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 33.6 bits (77), Expect = 0.017
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E+ K E + + K K++ K +KK KK K K K K K K K+
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 33.2 bits (76), Expect = 0.026
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K K++ K +KK K+ K K + K K K K K + K KK +K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Score = 31.7 bits (72), Expect = 0.075
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
P ++ K +K+ KK K K + K K + K K + K KK K K
Sbjct: 79 PTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
Score = 30.9 bits (70), Expect = 0.16
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ +KK +K K K K + K K + K + K KK K K
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133
Score = 30.1 bits (68), Expect = 0.24
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E + K K+K + +KK +K K K K K K K K K + K K
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Score = 29.8 bits (67), Expect = 0.32
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ E K K++ K +K+ KK K K K K K K K K + K
Sbjct: 70 PTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 29.8 bits (67), Expect = 0.40
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ K + + + K K+K K +KK KK K K K K K
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Score = 29.4 bits (66), Expect = 0.51
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ + +++ K + + + K K+K K +KK KK K K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 29.0 bits (65), Expect = 0.73
Identities = 16/47 (34%), Positives = 19/47 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK KK K K K K K + K K + K KK K K +
Sbjct: 91 EKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPAR 137
Score = 27.8 bits (62), Expect = 1.7
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
P + + + K K K K ++K KK K K K K K K K
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 27.1 bits (60), Expect = 2.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + E++ K + + + K K+K K +KK KK K K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 26.7 bits (59), Expect = 3.8
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +++ + + + + + K+K K +KK KK K K K
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 26.3 bits (58), Expect = 5.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + +E+ K + + K K+K K +KK KK K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKP 99
Score = 25.9 bits (57), Expect = 7.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E +++ K + + + K K+K K +KK KK K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKP 103
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 34.7 bits (80), Expect = 0.008
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I K KKKKK+KKK KK K KK K++K + K KK +++++ K
Sbjct: 248 IRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQK 297
Score = 34.3 bits (79), Expect = 0.010
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KKKK+KKKK K+ K KK K++K + K KK +++++ + KI
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299
Score = 33.1 bits (76), Expect = 0.028
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
P +K KKKK KK K KK K+++ + K KK +++++ +KK K
Sbjct: 252 PSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 30.8 bits (70), Expect = 0.15
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K +KKKKKKKK KK + KK K++K + K KK + + ++ K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 30.0 bits (68), Expect = 0.32
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
D +E KK + K KKKKK+KKK KK K KK K++ K
Sbjct: 235 DSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKK 288
Score = 29.3 bits (66), Expect = 0.56
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
A + K KKKKKK+KK +K K KK K++K + K K + ++
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQ 296
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 34.2 bits (79), Expect = 0.011
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 48 SDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKR 107
+L+ I D ++ + +A + + EKK+K K++ KKKK +
Sbjct: 209 KELLKSLLIPEFKPLDKYLKESKKKKR----ETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 108 KKKKKKKKKKKKKKKKKK 125
+ K K KK K KK
Sbjct: 265 ESKGVKALKKVVAKGMKK 282
Score = 30.8 bits (70), Expect = 0.19
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K K++ +E + + + +KK+K K++ KKKK K+ K K K
Sbjct: 225 KYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVA 277
Score = 26.5 bits (59), Expect = 5.4
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ KKK+++ ++ + + + KK+K K++ KKKK K+ K K
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 33.9 bits (78), Expect = 0.015
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
A KK ++ ++K K +K K ++ +KK KK + K K
Sbjct: 331 AAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKA 374
Score = 31.2 bits (71), Expect = 0.14
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K +K ++K K +K K ++ +KK KK + K K K IK
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIK 380
Score = 30.8 bits (70), Expect = 0.18
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK +K + K K +K K ++ +KK KK + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 30.4 bits (69), Expect = 0.23
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KK +K ++K K +K K ++ +KK KK K+ K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 29.3 bits (66), Expect = 0.53
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
A++K K +K K R+ +KK KK + K K K K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 29.3 bits (66), Expect = 0.57
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
P + K +EK K ++ K ++ +KK KK + K K K K
Sbjct: 330 PAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 28.1 bits (63), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
KK +K + K K +K K ++ +KK K ++ K+
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVA 372
Score = 27.7 bits (62), Expect = 1.8
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K +K ++K + +K + ++ +KK KK + K K I
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 34.1 bits (78), Expect = 0.016
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
E AK ++ +K ++ R + KK ++ KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASE 1216
Score = 32.5 bits (74), Expect = 0.055
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K+ K ++ ++K +R + KK ++ KK KK K
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 31.4 bits (71), Expect = 0.14
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ K E+ ++K ++ + + KK ++ KK KK K
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKAS 1215
Score = 31.0 bits (70), Expect = 0.20
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
D ++K K +E ++K ++ + + KK ++ KK KK K
Sbjct: 1166 DKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 29.8 bits (67), Expect = 0.46
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K+ K ++ ++K ++ R + KK ++ KK K
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASE 1216
Score = 29.1 bits (65), Expect = 0.89
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
D + ++K ++ + + KK ++ KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 28.7 bits (64), Expect = 1.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D +EK K ++ K ++ R+K ++ + + KK ++ KK K
Sbjct: 1159 DALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPK 1208
Score = 26.7 bits (59), Expect = 4.2
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++K K+ + ++ ++K ++ + + KK ++ KK K K
Sbjct: 1165 LDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTK 1212
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 33.7 bits (77), Expect = 0.019
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK------KKKKKKNKNK 130
E +KKKKE+K K+K+ +K K +K+ K K + ++ KK +KK++ +
Sbjct: 17 ELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Score = 32.6 bits (74), Expect = 0.044
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
EK ++E ++KKKK+ K K+K KK K +K+ K K + ++ +
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASD 54
Score = 31.0 bits (70), Expect = 0.16
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
++ E+KKKK++K K+K+ +K K +K+ K K + ++ + + K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPK 60
Score = 31.0 bits (70), Expect = 0.20
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
E +KK +++ ++K+KK++K K+K+ KK K +K+ K K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
Score = 30.6 bits (69), Expect = 0.26
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
E + +KK +++ +RKKKK++K K+K+ KK K K K+
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 30.3 bits (68), Expect = 0.29
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E KK E++ ++KKK+++K K K+ KK K +K+ K K + +
Sbjct: 7 EAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS 53
Score = 29.5 bits (66), Expect = 0.58
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A+KK +++ ++KK+K++K ++K+ KK K +K+ K K + +
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
Score = 29.1 bits (65), Expect = 0.72
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
++ + KKKK++K ++K+ K+ K +K+ K K + ++ N
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTN 57
Score = 29.1 bits (65), Expect = 0.77
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + ++K +++ +KKKK +K K+K+ KK K +K+ K K +
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 29.1 bits (65), Expect = 0.77
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+K +++ ++KKKK+++ K+K+ KK K +K+ K K + ++ +
Sbjct: 10 KKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDG 55
Score = 27.2 bits (60), Expect = 3.1
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ +KK ++ ++KK+K++K K+K+ KK K +K+ K K+
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 26.8 bits (59), Expect = 4.8
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + E +KK + + ++K+KK++K K+K+ KK K +K
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQK 41
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 33.3 bits (76), Expect = 0.021
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
++ K +KK KKKK + K+RKKKKK+KKKKKK+
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 31.7 bits (72), Expect = 0.061
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+ K EKK KKKK K+++KKKK+KKKKKK+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 30.2 bits (68), Expect = 0.21
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ + K ++K KKK+ + K++KKKKK+KKKKKK
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.5 bits (77), Expect = 0.022
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
+I K + K K K K K K KK +++ K++ K + +
Sbjct: 91 VIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.0 bits (68), Expect = 0.30
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
K + K K K K K K KK +++ K++ K +
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 29.7 bits (67), Expect = 0.45
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
I K K K K K K KK ++ K+ K + +
Sbjct: 91 VIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 29.3 bits (66), Expect = 0.47
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K E K K K K K K +K +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 29.3 bits (66), Expect = 0.48
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
++ + K + K K K K KK + + K++ K + +
Sbjct: 90 VVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.9 bits (65), Expect = 0.75
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
PI + ++A + + K K K K K K KK +++ K++ K + +
Sbjct: 80 PIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.7 bits (62), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K+ K + K K K K K K KK +++ K++ K
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122
Score = 27.7 bits (62), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K + K K K K K K KK +++ K++ K
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.6 bits (77), Expect = 0.025
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 23 NKLLKDSLSD--RLSDRSRLEFISH-DISDLVSDDRISAGDFFD--------FLRLTESG 71
+K +KD L R+ ++L F+S D LV + I ++ F +L E+
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
G + + +E+ +++ ++ K KK KKK K+ K
Sbjct: 841 -----GKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGK 885
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 33.3 bits (77), Expect = 0.026
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
D ++ +K + +K+++ +K K+ KK + +KKK+ K K I
Sbjct: 163 FEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Score = 32.1 bits (74), Expect = 0.071
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
E K K+ + KK + +KKK+ K K+ + KK K+ + +IN
Sbjct: 182 EDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEIN 233
Score = 31.7 bits (73), Expect = 0.11
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+I + ++ +K + +K+++ K K+ + KK + +KKK+ K K ++I
Sbjct: 162 DFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIG 218
Score = 30.6 bits (70), Expect = 0.25
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+K++E +K K+ + KK + +KKK+ K K+ + KI K
Sbjct: 178 QKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 30.2 bits (69), Expect = 0.28
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
L + + FG + E K++ +K + +K+ + +K K+ + KK + +KKK+ K
Sbjct: 147 LIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSK 206
Query: 127 NKNK 130
N +
Sbjct: 207 NFDP 210
Score = 26.0 bits (58), Expect = 8.2
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 20/75 (26%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK--------------------KK 120
+ +E KK + EKKK+ K K+ + KK K++ K
Sbjct: 189 EALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEERRVVVEGYVFKV 248
Query: 121 KKKKKKNKNKIIKIN 135
+ K+ K+ I+
Sbjct: 249 EIKELKSGRHILTFK 263
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 32.8 bits (75), Expect = 0.031
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
KV E+ K+KKK+K+ KK+KK KK KK K + K KKKKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 32.0 bits (73), Expect = 0.059
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E +++++K+KKKKK+ KK+KK KK KK+K + K KKKKK K K
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 27.4 bits (61), Expect = 2.2
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + K +K+ + ++ +KK+K+KKK+ KK+KK+KK KK+K + K K
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Score = 27.0 bits (60), Expect = 2.5
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ +K+ K +K+ + ++++K++KKKKK+ KK+KK+KK KK K K
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 26.2 bits (58), Expect = 6.0
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
GP ++ +++ +KE K +K+ + +++ KK+KKKKK+ KK+KK+KK K K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 33.0 bits (76), Expect = 0.033
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
D+I K KK KKK KK KK+KKK+KK
Sbjct: 578 DLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 26.8 bits (60), Expect = 3.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
L ++G + G + KK KK+ KK KK+KKK+KK
Sbjct: 571 LKKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 32.9 bits (75), Expect = 0.034
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 56 ISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
+ D +D +++ S++ GP+ + + K K EK KKK K KKKKK
Sbjct: 87 LHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKI---TVNKSTNKKKKKVL 143
Query: 116 KKKKKKKKKKKNKNKIIKIN 135
K + K NK K I I+
Sbjct: 144 SSKDELIKYDNNKPKSISIH 163
Score = 26.7 bits (59), Expect = 4.1
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
I D + KK +K KK +K K K KK K K+KKK KKK
Sbjct: 39 IKDSLLNLDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 32.7 bits (75), Expect = 0.039
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+K KK K K KKKK+K K + ++ K KKK K
Sbjct: 348 ATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 32.3 bits (74), Expect = 0.050
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
F I+K+ K K KKKKKK K + ++ K KKK KK
Sbjct: 346 FTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 32.3 bits (74), Expect = 0.058
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K KK K K KKK+KK K + ++ K KKK K
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.1 bits (71), Expect = 0.12
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
RL ++ ++K + KK K+ K K K+KKKK K + ++ K K
Sbjct: 329 RLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGK 388
Query: 126 KNKNK 130
K K
Sbjct: 389 KKVKK 393
Score = 28.4 bits (64), Expect = 1.1
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 83 IEKAKKKKKE-----------KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
++KAK KK + K KK + K KK+KKK K + ++ K+ K
Sbjct: 330 LKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKK 389
Query: 132 IKIN 135
Sbjct: 390 KVKK 393
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 32.3 bits (74), Expect = 0.043
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K K ++ ++ + K+++ + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 0.38
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
D + +E + K ++ + +KK+ KKKK
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 31.8 bits (73), Expect = 0.043
Identities = 18/42 (42%), Positives = 33/42 (78%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+A K + E+ K++KKKR K+KK ++K++K++ K++KKK K +
Sbjct: 89 QALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.0 bits (63), Expect = 1.0
Identities = 14/39 (35%), Positives = 33/39 (84%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K E ++ K++K+K+ K++K+++K++K++ K++KKK K++
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.0 bits (63), Expect = 1.0
Identities = 14/40 (35%), Positives = 30/40 (75%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
+ E+ K++KK++ K+KK++ K++K++ K++KKK K +
Sbjct: 91 LKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 26.1 bits (58), Expect = 4.5
Identities = 13/35 (37%), Positives = 30/35 (85%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ K+ KKK+ ++KK+++K++K++ K++KKK K++
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 32.4 bits (74), Expect = 0.054
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 14/65 (21%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKR--------------KKKKKKKKKKKKKKKKKKKNKN 129
+K + K+K KKK KK +K + K+ KKKKKKKKKKKKKN
Sbjct: 13 QKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLG 72
Query: 130 KIIKI 134
+ +
Sbjct: 73 EAYDL 77
Score = 30.8 bits (70), Expect = 0.18
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 19/67 (28%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKK-------------------KKKKKKKKKKKK 124
E + + K++K++ K+K KKK +K KK K+ KKKKKKK
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 125 KKNKNKI 131
KK K K
Sbjct: 64 KKKKKKN 70
Score = 30.1 bits (68), Expect = 0.29
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
I + E K+ +KKKKKKKK+KKK + ++ + I K+
Sbjct: 43 LISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLG 100
Score = 30.1 bits (68), Expect = 0.36
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 18/68 (26%)
Query: 84 EKAKKKKKEKKKKKKKK------------------RKKKKKRKKKKKKKKKKKKKKKKKK 125
+ +K K+K KK KK K+ +KKKKKKKKKKKK +
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Query: 126 KNKNKIIK 133
+
Sbjct: 76 DLAYDLPV 83
Score = 29.3 bits (66), Expect = 0.69
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ + + +E + K+ K KKKKK+KKKKKK +
Sbjct: 38 AFLAELISENQEAENKQNNK-KKKKKKKKKKKKNLGEAYDLAYDLPVV 84
Score = 27.0 bits (60), Expect = 3.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + K++K++ K+K KKK KK+K +
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.4 bits (75), Expect = 0.054
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 82 IIEKAKKKKKEKKKKKK---KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I+E+AKK+ + KK+ K+ K + + +K+ ++++ + +K +K+ K
Sbjct: 43 ILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94
Score = 27.8 bits (63), Expect = 1.7
Identities = 11/50 (22%), Positives = 28/50 (56%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I + E+AK+ +E KK+ + +K+ K++ K + + +K+ +++
Sbjct: 33 IKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRN 82
Score = 27.0 bits (61), Expect = 3.1
Identities = 10/45 (22%), Positives = 31/45 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ +K E +K++++ +KK+K ++K+++ +KK+++ ++ +
Sbjct: 95 EENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
Score = 27.0 bits (61), Expect = 3.8
Identities = 9/41 (21%), Positives = 31/41 (75%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
E +K+++E +KK+K+ +K+++ +KK+++ ++ +++ ++
Sbjct: 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 26.7 bits (60), Expect = 5.0
Identities = 10/55 (18%), Positives = 34/55 (61%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
IH + + +K+ +E++ + +K K+ ++++ +K + +K++++ + K K ++
Sbjct: 66 IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
Score = 25.9 bits (58), Expect = 7.5
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
E+ K + E +K+ +++R + +K +K+ +K++ +K + + + + +
Sbjct: 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEEL 112
Score = 25.9 bits (58), Expect = 8.0
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK + K K+ +++ K+ + KK+ + KK+ + K++
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL 69
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 32.0 bits (73), Expect = 0.056
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ +K K +KKK KKKK K K K+ KK K +KK +K+ + K +
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 31.6 bits (72), Expect = 0.079
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 83 IEKAKK---KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
IEK KK +K++ K KKKK +KKK K K KK KK K +KK +K+ ++K+ +
Sbjct: 71 IEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT 126
Score = 30.8 bits (70), Expect = 0.13
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ K KK+K KKKK K K KK KK K +KK +K+ + K ++ K
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 30.4 bits (69), Expect = 0.17
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKK----KKKRKKKKKKKKKKKKKKKKKKKNKNK 130
PI+D KKKK++ ++ +K KK K+K K KKKK KKKK K K KK +K
Sbjct: 51 PIYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 29.7 bits (67), Expect = 0.37
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KKKK KKKK K K KK K+ K +KK +K+ + K + K+
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 28.5 bits (64), Expect = 0.91
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K K KKK+ K K KK KK K +KK +K+ + K + K ++
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 28.1 bits (63), Expect = 1.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K KK KK+K K K KK KK + +KK +K+ + K + K
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 27.7 bits (62), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KKK K+KK K K K+ KK K +KK +K+ + K + K+ ++
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Score = 27.7 bits (62), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KKKK +KKK K K +K KK K +KK +K+ + K +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 26.6 bits (59), Expect = 3.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+K+KKKK + K KK K+ K ++K +K+ + K + K + + +
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 25.8 bits (57), Expect = 6.6
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+K K KK +KK K +K+ +K+ K + K + + K + ++
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALH 147
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.4 bits (73), Expect = 0.059
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ AKKK +E KK + + + + + + ++K + +KKK+ K
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 31.3 bits (70), Expect = 0.13
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+AKKK KKK ++ +K + K + + + + ++K + K
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 30.9 bits (69), Expect = 0.21
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+AKK + K + + + + ++K + +KKK++ KKK K
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 30.5 bits (68), Expect = 0.25
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A K + E + + ++K + +KKK++ KKK KKK + K
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 30.1 bits (67), Expect = 0.32
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E AK + + + + +K + +KKK++ KKK KKK + K K
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 30.1 bits (67), Expect = 0.34
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D E A++K + +KKK++ +KK KKK ++KKK + KKK +++K K
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 29.7 bits (66), Expect = 0.45
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++AKKK +E KKK +KK ++ KK + K + + + + +
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 29.3 bits (65), Expect = 0.59
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A + E ++K + +KKK+ KKK KKK ++KKK K
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 28.6 bits (63), Expect = 1.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E + + ++K + +KKK + KKK KKK ++KKK ++ K
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Score = 28.6 bits (63), Expect = 1.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ A+ K E + + ++K + +KKK++ KKK KK + K
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 28.6 bits (63), Expect = 1.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E A + + ++K + KKK++ KKK KKK ++KKK + K K
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 28.6 bits (63), Expect = 1.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KA+ + + + +++ + ++KK++ KKK KKK ++K K
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 28.2 bits (62), Expect = 1.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+KA++ KK + KKK + KKK KKK ++ KK + K + +
Sbjct: 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Score = 27.8 bits (61), Expect = 2.0
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
AKKK E KKK ++K+K + +KK ++ KK + KKK ++ K
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.4 bits (60), Expect = 2.6
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++AKKK +E KK + K+K ++ +K ++ KKK ++ KK + K K
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 27.4 bits (60), Expect = 2.6
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++AKKK +E KK ++ K+K ++ +K + KKK ++ KK + K K
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 27.4 bits (60), Expect = 2.7
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++AKKK +EKKK + K+K ++ +K + KKK ++ KK ++ K K
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 27.4 bits (60), Expect = 2.9
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A +KKKE+ KKK KKK + KKK + KKK ++ KKK K
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
Score = 27.0 bits (59), Expect = 3.9
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+AKKK +E KK + K+K ++ +K + KKK ++ KKK + K
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Score = 27.0 bits (59), Expect = 3.9
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E A+KKK+E KKK +KK +++KK + KKK ++ KKK + K
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
Score = 27.0 bits (59), Expect = 4.5
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KKK E+ KKK + KK KKK + KKK ++KKK + K K
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 27.0 bits (59), Expect = 4.6
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ KK KKK + K+K ++K+K + KKK ++ KK + K K
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 26.6 bits (58), Expect = 5.2
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+AKKK KKK ++K+K + +KK ++ KKK + KK K
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 26.6 bits (58), Expect = 5.6
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E+AKKK E KK + K+K + +K ++ KK + KK ++ KK
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Score = 26.6 bits (58), Expect = 5.7
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ KKK E KK K+K + +KK ++KKK + KKK ++ K
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 26.6 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ KKK +E KK ++ ++K + KK+ ++ KK ++ KKK+ + K K
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 26.6 bits (58), Expect = 6.2
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + ++ + ++K + +K+K++ KKK KKK ++KK ++ K
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 26.6 bits (58), Expect = 6.2
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
A KKK E+KKK + +KK ++ KKK + KK KKK + K K
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 26.3 bits (57), Expect = 7.0
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D +KA++KKK + KKK + KK KKK ++ KKK KKK + K
Sbjct: 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 26.3 bits (57), Expect = 7.1
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++AKKK +E KK + K+K ++ +KK + KK + KKK + K
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 26.3 bits (57), Expect = 7.5
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
D ++KA++KKK + KK +++KK + KKK ++ KK + KKK ++ K K
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 26.3 bits (57), Expect = 7.6
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++AKKK +E KKK + +K +KK + KKK ++KKK + K
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
Score = 26.3 bits (57), Expect = 7.6
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+KKK ++ KKK ++ KKK KK KKK + KKK + K K
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 26.3 bits (57), Expect = 7.9
Identities = 18/51 (35%), Positives = 36/51 (70%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E+AKK+ +E KKK ++ +K ++++KK KK+++KK ++ +K K +I+
Sbjct: 1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Score = 25.9 bits (56), Expect = 8.9
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
I+ A++ KK ++ KKK + KK + +KK + KK+ ++ KK
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 32.2 bits (73), Expect = 0.062
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + K+K K+K K+ + + + + ++ K+++ K
Sbjct: 791 IKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAI 840
Score = 30.7 bits (69), Expect = 0.22
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
KA + K+K K+K K+ K + + ++ K++++K + +N
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILN 842
Score = 30.3 bits (68), Expect = 0.26
Identities = 9/51 (17%), Positives = 25/51 (49%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
I+ A + K++ K+K ++ K + + + ++ K++++K I
Sbjct: 791 IKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAIL 841
Score = 30.3 bits (68), Expect = 0.31
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I A+ K+K K+K K K + + + ++ K++++K
Sbjct: 790 TIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEK 833
Score = 29.9 bits (67), Expect = 0.39
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+AK+K KEK K+ + + + + ++ K++++K +K
Sbjct: 796 RAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVK 844
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 32.3 bits (73), Expect = 0.066
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
H E +K +K +KK KK KK++KK+K+K++ K KKK+ + K+
Sbjct: 178 HRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 30.8 bits (69), Expect = 0.19
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 27 KDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKA 86
K+ +R D+ + + + D SA + + + + P + E
Sbjct: 208 KEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPK 267
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+ +E KK K K+KK++K K++KKKKKK +
Sbjct: 268 DAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 29.6 bits (66), Expect = 0.42
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K EK ++K KK +KK+KK+K+K++ K KKK+ K
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 29.3 bits (65), Expect = 0.74
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
P+ D K +++++ +++ +K KR+KKK+ K+K+ +++
Sbjct: 76 PMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.5 bits (63), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + K +K +KK K+ KKK+KK+K+K++ K KKK
Sbjct: 179 RNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 28.1 bits (62), Expect = 1.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++K + + K +K +KK KK KKK+KK+K+K++ K K K
Sbjct: 175 VQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEV 222
Score = 28.1 bits (62), Expect = 1.6
Identities = 9/33 (27%), Positives = 25/33 (75%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K E++++ +++ +K K+ KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.7 bits (61), Expect = 2.0
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ A + ++ K + + KK + KKKK++K+K++KKKKKK + ++
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 27.3 bits (60), Expect = 2.8
Identities = 10/33 (30%), Positives = 26/33 (78%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K +++++ ++R +K KR+KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/32 (28%), Positives = 25/32 (78%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K ++++R +++ K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 27.0 bits (59), Expect = 3.6
Identities = 9/34 (26%), Positives = 28/34 (82%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K +++R+ +++ +K K++KKK++K+K+ ++++ +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 26.6 bits (58), Expect = 4.8
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
K +E+++ +++ K K+++KK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 26.2 bits (57), Expect = 7.3
Identities = 9/33 (27%), Positives = 26/33 (78%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K +++++ R++ +K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 25.8 bits (56), Expect = 8.5
Identities = 7/33 (21%), Positives = 26/33 (78%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
K ++E++ +++ ++ K++K+K++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.9 bits (73), Expect = 0.070
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E+ ++K++EK K K + KK + K ++K+K K++K++K + +
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 31.2 bits (71), Expect = 0.11
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ D ++ + ++KE++K K + K KK K K ++K+K K++K++K +
Sbjct: 32 DVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 31.9 bits (73), Expect = 0.073
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
K KK+ K K+ +++K K++ K K + +K+
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKS 48
Score = 31.1 bits (71), Expect = 0.15
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
KK+ K K+ +++K K++ K K + +K
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.3 bits (69), Expect = 0.26
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K KK+ K K+ ++++ K++ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.0 bits (68), Expect = 0.39
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KK+ K K+ ++ K K++ K K +++
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSR 46
Score = 28.8 bits (65), Expect = 0.77
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KK+ K K+ ++K K++ K K +++
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSR 46
Score = 28.4 bits (64), Expect = 1.3
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K KK+ K ++ ++++ K++ K K + K+
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKS 48
Score = 28.0 bits (63), Expect = 1.5
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+K K++ K K+ + +K K + K K + +K
Sbjct: 9 SKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 28.0 bits (63), Expect = 1.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
KAK+ ++EK K++ K K + +K
Sbjct: 17 LKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 27.6 bits (62), Expect = 2.5
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KK+ + K+ + +K K++ K K K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 31.9 bits (73), Expect = 0.081
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KA KK K K +K KK KK KK +K
Sbjct: 818 PKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 30.8 bits (70), Expect = 0.23
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E + K KK K + +K KK KK KK K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARK 860
Score = 28.9 bits (65), Expect = 0.93
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
A KK K + +K KK KK KK +K
Sbjct: 821 AAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 28.5 bits (64), Expect = 1.2
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
++ K KK K K +K KK KK K +
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAAR 859
Score = 28.5 bits (64), Expect = 1.3
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E ++ K KK + K +K KK KK K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKT 856
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
A KK K K +K KK KK KK +K
Sbjct: 821 AAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 27.3 bits (61), Expect = 3.3
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+K K K +K KK KK KK +K
Sbjct: 824 KKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 25.8 bits (57), Expect = 8.5
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K K K ++ KK KK KK +K
Sbjct: 823 AKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 25.8 bits (57), Expect = 8.7
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+ AK K +K KK +K KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.7 bits (72), Expect = 0.090
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+AKK+ +E+ K K KKK + KKK + + K K + K K K
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 30.6 bits (69), Expect = 0.23
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E K+ E K K + + +KK K + KK+ +++ K K + K K
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 30.2 bits (68), Expect = 0.28
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+AKKK E KKK + + K K + K K K ++ K K + K K
Sbjct: 162 AEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 29.8 bits (67), Expect = 0.40
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E+AK K + KKK + KKK + + K K + K K K ++ K
Sbjct: 154 EEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKA 196
Score = 29.4 bits (66), Expect = 0.46
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E K E KKK + +KK + K K + K K K ++ K K +
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 29.0 bits (65), Expect = 0.69
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K K E + +KK K + KK+ +++ K K + KKK + K
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173
Score = 28.3 bits (63), Expect = 1.4
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+A+KK KE+ KK+ ++ K K + KKK + KKK + + K K
Sbjct: 138 AEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 27.5 bits (61), Expect = 2.1
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E+A K+ +EK+K+ ++ + K+ K K + + +KK K++ KK
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Score = 27.5 bits (61), Expect = 2.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A+ +KK K++ KK+ ++ K + + KKK + KKK + + K K
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
Score = 27.1 bits (60), Expect = 2.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
A+ KKK + KKK + + K K + K K K ++ K K + K K
Sbjct: 160 AAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 27.1 bits (60), Expect = 3.2
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A++ K+ ++K+K+ + K K+ + K K + + +KK K++ K +
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/47 (19%), Positives = 29/47 (61%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E K++ E+ ++K+ +++ ++ K+ ++ K+ ++K+K+ + K
Sbjct: 79 EAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Score = 26.7 bits (59), Expect = 4.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + KK+ +++ K K + KK+ + KKK + + K K + K K K
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 26.7 bits (59), Expect = 4.9
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ EK++ ++ R+K+ +++ +K K+ ++ K+ + K K
Sbjct: 76 QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 26.3 bits (58), Expect = 5.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E KK + E K K + K K K + K K + K K + K
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAK 212
Score = 26.3 bits (58), Expect = 5.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K K+ + K K + + +KK K++ KK+ +++ K K + K K
Sbjct: 121 AEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 26.3 bits (58), Expect = 5.9
Identities = 9/48 (18%), Positives = 28/48 (58%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+E+ +K K+ ++ ++ ++K+K+ ++ K K+ + K K + + +
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 26.0 bits (57), Expect = 6.8
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E K K E K K K + K K K K + K + +
Sbjct: 176 EAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Score = 26.0 bits (57), Expect = 7.4
Identities = 6/49 (12%), Positives = 30/49 (61%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+E+ ++ ++++ ++ ++K+ ++R +K K+ ++ K+ ++ + +
Sbjct: 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQA 121
Score = 26.0 bits (57), Expect = 8.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KKK E + K K + K K K ++ K K + K K + K
Sbjct: 168 AAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAK 212
Score = 25.6 bits (56), Expect = 9.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K+ ++ K+ + K+K+ + K K+ + K K + + + K K
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 31.7 bits (72), Expect = 0.093
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
A KK E +K+K RK + KK KK + +
Sbjct: 346 DVDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 29.0 bits (65), Expect = 0.63
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
KK + RK+K RK K KK KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 29.0 bits (65), Expect = 0.81
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K + RK+K +K K KK KKN+ +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 28.3 bits (63), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KK + +KRK +K K KK KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 26.3 bits (58), Expect = 6.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KK + +K+K +K K KK KK + +
Sbjct: 347 VDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 31.5 bits (72), Expect = 0.097
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+ E + KKK ++++KKKKKK KKKK KK I
Sbjct: 164 KEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 31.5 bits (72), Expect = 0.098
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
+I K K + E + + K+ K + K + K N KII
Sbjct: 333 LILKTSKTESEDDLEAATAKMKEMK-GESKGQSSALAADVKNDLSNVKKII 382
Score = 30.4 bits (69), Expect = 0.28
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
D +E A K KE K + K + K KK
Sbjct: 344 DDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 28.8 bits (65), Expect = 0.89
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K + + K K+ K + K + KN +K
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVK 379
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 31.8 bits (72), Expect = 0.100
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 107 RKKKKKKKKKKKKKKKKKKKNK 128
RKKKKKKK K+KKKKK ++ +K
Sbjct: 684 RKKKKKKKSKEKKKKKNREASK 705
Score = 31.4 bits (71), Expect = 0.14
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 107 RKKKKKKKKKKKKKKKKKKKNKNKII 132
+KKKKKKK K+KKKKK + +K I
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQI 707
Score = 30.2 bits (68), Expect = 0.29
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKK 123
RKKKKK+K K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.2 bits (68), Expect = 0.32
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKK 126
+KK+KKKK K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.8 bits (67), Expect = 0.48
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKK 115
+KKKKKKK K+KKK+K ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKK 116
+KKKKKK+ K+KK+KK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 1.6
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKK 112
+K+KKKKK K++KKKK R+ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.9 bits (62), Expect = 1.9
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKK 109
++KKKK+KK K+KKK+K ++ K+
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.5 bits (61), Expect = 2.7
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKK 113
++KKKKKK K KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.1 bits (60), Expect = 3.0
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKK 106
K KKKKK K+KKKKK R+ K+
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQ 706
Score = 27.1 bits (60), Expect = 3.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKK 111
+KK+KKKK K+K+KKK + K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.1 bits (60), Expect = 3.4
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKK 110
+KKK+KKK K+KK+KK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 26.4 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKR 107
+ KKKKK+ K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 30.7 bits (70), Expect = 0.10
Identities = 11/44 (25%), Positives = 32/44 (72%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ KK++ + ++++ K++ +++K+ +K ++KK K+++K+K K
Sbjct: 87 RPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 28.8 bits (65), Expect = 0.58
Identities = 18/55 (32%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKK-KRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ +EK ++KEKKKK+K+ KK++ + ++++ K++ +K+K+ +KN+ K K
Sbjct: 68 NAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFK 122
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.7 bits (73), Expect = 0.10
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 79 IHDIIEKAKK---------KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
I++AKK ++ +K K + + +K+ K +KK+KKKKK+K K
Sbjct: 575 AQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQ 634
Query: 130 KIIKIN 135
+ +K+
Sbjct: 635 EELKVG 640
Score = 28.3 bits (64), Expect = 1.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + + +KR K KK+KKKKK+K+K+++ K ++ K + +
Sbjct: 605 KAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLG 649
Score = 26.7 bits (60), Expect = 4.1
Identities = 9/49 (18%), Positives = 32/49 (65%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
++++I ++ ++E ++K ++ K+ +K K++ ++KK+K ++++
Sbjct: 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566
Score = 26.3 bits (59), Expect = 5.7
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK-----KKNKNKIIK 133
E+A+ KE +K K++ +KK+K ++++ K ++ +K+ ++ KK ++IIK
Sbjct: 536 AEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK 591
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.4 bits (71), Expect = 0.11
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K+ KK KKK K KK K K KK KK KK K K +K
Sbjct: 220 KSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVK 268
Score = 31.0 bits (70), Expect = 0.15
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
A K K+ KK KK KK K KK KK K K K K
Sbjct: 244 TAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Score = 30.6 bits (69), Expect = 0.19
Identities = 19/46 (41%), Positives = 20/46 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
AK KK KK K K K K K K K KKK KK +K
Sbjct: 263 AAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308
Score = 30.6 bits (69), Expect = 0.20
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KA K K KK KK+ K KK K K KK KK K
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Score = 30.2 bits (68), Expect = 0.24
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KA KK K+ KK KK K K+ KK K K K K K K
Sbjct: 247 KAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK 292
Score = 30.2 bits (68), Expect = 0.26
Identities = 18/49 (36%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KK K K K+ KK +K KK K KK KK K K K
Sbjct: 235 AVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAK 283
Score = 30.2 bits (68), Expect = 0.27
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K KK KK K K+ KK K K K K K K K K K K
Sbjct: 253 KKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGK 301
Score = 30.2 bits (68), Expect = 0.27
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KAKK K+ KK K KK K+ K K K K K K K K
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAK 296
Score = 30.2 bits (68), Expect = 0.30
Identities = 19/46 (41%), Positives = 19/46 (41%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KA K KK K K KK KK KK KK K KK K
Sbjct: 230 KAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275
Score = 30.2 bits (68), Expect = 0.31
Identities = 17/45 (37%), Positives = 18/45 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ K K KK KKK K KK K K KK KK K
Sbjct: 215 ASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKA 259
Score = 29.9 bits (67), Expect = 0.33
Identities = 18/51 (35%), Positives = 19/51 (37%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
AKK K+ K KK KK K K K K K K K K K
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAA 305
Score = 29.9 bits (67), Expect = 0.38
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
AK KK KK KK +K K KK KK K K K K
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATK 290
Score = 29.9 bits (67), Expect = 0.40
Identities = 21/59 (35%), Positives = 25/59 (42%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
SG++K +K KKK K KK K + KK KK KK KK K K
Sbjct: 210 SGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVK 268
Score = 29.9 bits (67), Expect = 0.40
Identities = 19/48 (39%), Positives = 20/48 (41%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K KK KK KK + KK KK K K K K K K K K
Sbjct: 250 KKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKK 297
Score = 29.5 bits (66), Expect = 0.44
Identities = 16/46 (34%), Positives = 17/46 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K K KK +KK K KK K K KK K K
Sbjct: 212 AKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257
Score = 29.5 bits (66), Expect = 0.46
Identities = 17/46 (36%), Positives = 17/46 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK K K KK KKK K KK K K KK K
Sbjct: 210 SGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 29.5 bits (66), Expect = 0.52
Identities = 19/49 (38%), Positives = 19/49 (38%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
AKK KK KK KK K KK KK K K K K K
Sbjct: 248 AAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAK 296
Score = 29.1 bits (65), Expect = 0.58
Identities = 16/46 (34%), Positives = 17/46 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K KK KK K +K KK K K K K K K K
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKK 297
Score = 29.1 bits (65), Expect = 0.58
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
AK + KK + K +K KKK K KK K K K
Sbjct: 203 AKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK 250
Score = 29.1 bits (65), Expect = 0.62
Identities = 17/44 (38%), Positives = 19/44 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+KKK + KK K K KK KK KK KK K K
Sbjct: 226 VSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 29.1 bits (65), Expect = 0.65
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K K +K KK KK KK + KK KK K K K
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Score = 29.1 bits (65), Expect = 0.74
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
A KK +KK K KK + K KK KK KK KK + K
Sbjct: 221 SAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 29.1 bits (65), Expect = 0.78
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KAK K+ KKK K K+ K K KK KK KK K
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKA 263
Score = 28.7 bits (64), Expect = 0.84
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K KKK K K+ K K KK KK KK KK K K K
Sbjct: 224 KKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAK 272
Score = 28.7 bits (64), Expect = 0.90
Identities = 18/44 (40%), Positives = 19/44 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K K+ K K KK KK KK KK K KK KK K
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 28.7 bits (64), Expect = 0.94
Identities = 16/45 (35%), Positives = 16/45 (35%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K K K KK K K KK KKK K KK K
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAK 243
Score = 28.3 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 16/46 (34%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK K K +K KK+ K KK K K K K
Sbjct: 208 AKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAK 253
Score = 28.3 bits (63), Expect = 1.3
Identities = 17/43 (39%), Positives = 18/43 (41%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
AK K KK KK +K KK K KK KK K K
Sbjct: 242 AKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Score = 28.3 bits (63), Expect = 1.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K+ KK K K K+ KKK K KK K K K K
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKK 254
Score = 27.9 bits (62), Expect = 1.5
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
AKK K K K+ K + KK KKK K K K
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAK 243
Score = 27.9 bits (62), Expect = 1.7
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K KK KK K+ KK K KK KK K K K K K
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATK 290
Score = 27.5 bits (61), Expect = 1.9
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
G + + A KK K K KK + K KK KKK K K
Sbjct: 188 GRVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAK 239
Score = 27.5 bits (61), Expect = 2.0
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
A K +K K K KK +KK K KK K K
Sbjct: 206 PAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAK 247
Score = 27.5 bits (61), Expect = 2.1
Identities = 16/49 (32%), Positives = 16/49 (32%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K KK K K KK KKK K KK K K K
Sbjct: 205 TPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAK 253
Score = 27.5 bits (61), Expect = 2.2
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
AKK K K K K K + K KKK KK K K
Sbjct: 271 AKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKA 311
Score = 27.5 bits (61), Expect = 2.3
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K + KK K+K K KK K K KK KK K +K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALK 261
Score = 27.5 bits (61), Expect = 2.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K +K KK K K + K K K K KKK KK
Sbjct: 261 KKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAG 306
Score = 27.2 bits (60), Expect = 2.6
Identities = 15/43 (34%), Positives = 15/43 (34%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K K K KK K K KK KKK K KK
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 27.2 bits (60), Expect = 2.7
Identities = 15/44 (34%), Positives = 16/44 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K K KK K + KK KKK K KK K K
Sbjct: 204 KTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAK 247
Score = 27.2 bits (60), Expect = 2.8
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KK K K KK K K KK KKK K + K K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAK 243
Score = 27.2 bits (60), Expect = 2.9
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KA KK + K K K K K K KKK KK K K K K
Sbjct: 269 KAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317
Score = 26.8 bits (59), Expect = 4.2
Identities = 18/51 (35%), Positives = 19/51 (37%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K K K KK KK KK +K K KK KK K K K
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKAT 289
Score = 26.4 bits (58), Expect = 6.2
Identities = 17/49 (34%), Positives = 19/49 (38%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KA K + K K K K K KKK KK K K K + K
Sbjct: 273 KAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAK 321
Score = 26.0 bits (57), Expect = 7.5
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
AK K K K K + KKK KK K K K K+ K K
Sbjct: 279 AKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGK 323
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.6 bits (72), Expect = 0.11
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+ K+K K K ++ K + K+KKK+KKK++KKKK+ ++ + +I K+
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356
Score = 30.8 bits (70), Expect = 0.17
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
I+ ++K K K +R +K + K+KKK+KKK++KKKK+
Sbjct: 299 MILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 30.8 bits (70), Expect = 0.19
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
EK + KEKKK+KKK+ KKKK+ ++ +++ +K + + K++NK
Sbjct: 322 EKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 29.6 bits (67), Expect = 0.50
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
I + K+K K K + +K + K+KKK+KKK++KKKK ++ +
Sbjct: 300 ILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350
Score = 29.2 bits (66), Expect = 0.67
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+ K+K K K ++ +K + K+KKK+KKK++K K +I ++
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLE 349
Score = 28.5 bits (64), Expect = 1.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++ KK + KRK K K ++ +K + K+KKK+KK + K
Sbjct: 293 LKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Score = 26.5 bits (59), Expect = 5.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK---------KKKKKKKKKK 126
F I D+ K K K + +K + K+KKK KKK++KKKK +K + + K
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDK 362
Query: 127 NKNKII 132
+NK +
Sbjct: 363 EENKTV 368
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 31.4 bits (72), Expect = 0.12
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
I DI++ ++ + K K +KK K KK +K KK +K+ K+ K + ++
Sbjct: 592 KIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAARL 648
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 30.4 bits (69), Expect = 0.13
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
I K K+K K+KK+KKK+KKKKK+K KK KKKK
Sbjct: 100 IVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.19
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
++E+ K K+ K+K K+K++KKKK+KKKKKK KK KKKK
Sbjct: 94 LVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.20
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K+ K+K K++K+KKK+KKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.20
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K+ K++ K+KK+KKKKKKKKKKK KK KK K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.3 bits (66), Expect = 0.36
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
I+++ K+K ++KK+KKKK+KKKKK+ KK KKKK
Sbjct: 98 QKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 0.73
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E++K K+ K+K K+KK+KKKKKKKKKKK KK K K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 25.8 bits (57), Expect = 5.7
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K+ K K K+KK+KKKKKKKKKKK +K K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKK 133
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.2 bits (70), Expect = 0.14
Identities = 14/63 (22%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 60 DFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
D + T S K+ + +EKAK+ + E+K +++++R+K+K+++++++++++ ++
Sbjct: 566 DLY----FTPLASSKLAKKREEAVEKAKR-EAEQKAREEREREKEKEKEREREREREAER 620
Query: 120 KKK 122
K
Sbjct: 621 AAK 623
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 30.2 bits (68), Expect = 0.15
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKK 106
EK KKKKK+ KK KK K+ KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.16
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKK 114
EK KKKKKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.19
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKN 127
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.25
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKK 125
K K+KKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.25
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 108 KKKKKKKKKKKKKKKKKKKNKN 129
K KKKKKK KK KK KK K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.25
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKK 124
+K KK+KKK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.25
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKK 117
E +K KKK+KK KK KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.28
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKK 112
P H + +K KKKKKK K+ KK K+ KK
Sbjct: 85 EPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 0.33
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 110 KKKKKKKKKKKKKKKKKNKNK 130
K KKKKKK KK KK KK+ K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 29.1 bits (65), Expect = 0.38
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 105 KKRKKKKKKKKKKKKKKKKKKK 126
K +KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 0.45
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKK 121
K KKKKK+ KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 0.69
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKK 119
K K+KKKK +K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 0.76
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKK 120
K +KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 1.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKK 118
K KK+KKK K+ KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 107 RKKKKKKKKKKKKKKKKKKKNKNK 130
+K KKKKKK KK KK KK +K
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 31.3 bits (71), Expect = 0.16
Identities = 14/99 (14%), Positives = 41/99 (41%)
Query: 28 DSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAK 87
+ R D + H + ++V++ + GD + +R E+ + + + + +
Sbjct: 844 AIIEQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEA 903
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ K ++K +++ ++ K+ K+ + K K
Sbjct: 904 LSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.9 bits (70), Expect = 0.16
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++A + + + KK K+ KKK KKK+ KK K K + I +
Sbjct: 590 DRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDV 640
Score = 27.8 bits (62), Expect = 1.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+A + + + + KK K+ KK+ KKK+ KK K+K
Sbjct: 588 QADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSK 631
Score = 27.4 bits (61), Expect = 3.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
D +A+ + +K K+ KK+ KKK+ KK K K +
Sbjct: 590 DRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAE 635
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 30.8 bits (70), Expect = 0.17
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K+ EK+++K+++ +KK + + KK +K+ +K++ K ++ K
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSEAK 196
Score = 26.1 bits (58), Expect = 6.5
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K ++K K+ K+++K+++ +KK ++ + KK +K K
Sbjct: 148 KSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEK 187
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.0 bits (70), Expect = 0.17
Identities = 20/47 (42%), Positives = 37/47 (78%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ KKKKKEK K++ K RK K++ K+K+ K+K+K+K+KK ++ +++
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 30.6 bits (69), Expect = 0.19
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ K++K+KKK+K K+ K +K K++ K+K+ K+K+K+K+K +
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 30.6 bits (69), Expect = 0.24
Identities = 18/47 (38%), Positives = 35/47 (74%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK KKK+K K++ K +K K++ K K+ K+K+K+K+KK ++ +++ +
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 30.2 bits (68), Expect = 0.33
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ K+EKKKKK+K +++ K RK K++ K+K+ K+K+K+K K
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 29.5 bits (66), Expect = 0.49
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ +K+K++ K++KKKK++K K+ K +K K++ K+K+ K+K K K
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 29.1 bits (65), Expect = 0.84
Identities = 17/47 (36%), Positives = 36/47 (76%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ +K++ +++KKKKK++ K++ + +K K++ K+K+ K+K+K K K
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 28.7 bits (64), Expect = 0.90
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K ++K+KE+ K++KKK+K+K K + K +K K++ K+K+ K+ + +
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Score = 28.7 bits (64), Expect = 1.0
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K K+ K + K++ K+K++ K++KKKKK+K K++ K +K K +
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136
Score = 28.3 bits (63), Expect = 1.1
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K K+K KE+ K +K K + K+KR K+K+K+K+KK ++ + + + K
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Score = 28.3 bits (63), Expect = 1.2
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
AK+ K E K+++K++++ K+ KKKKK+K K++ K +K K+
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 28.3 bits (63), Expect = 1.3
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
A K K K+ K + ++++K++++ K++KKKKK+K K++ K++
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 28.3 bits (63), Expect = 1.4
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++K++++ K++KK+KK+K +++ K +K K++ K+K+ K K K
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 28.3 bits (63), Expect = 1.4
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K+ K + K+++K K++ K +KKKKK+K K++ K +K K + K
Sbjct: 92 TKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 28.3 bits (63), Expect = 1.5
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
AK K ++ K + K ++K+K + K++KKKKK+K K++ K K K
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 27.9 bits (62), Expect = 1.6
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + K+++K+K + K+++KKKK+K K++ K +K K++ K K
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 27.9 bits (62), Expect = 1.9
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+EK K K K K+ K + ++++K+K++ K++KKKKK+K K
Sbjct: 80 VEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 27.5 bits (61), Expect = 2.1
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K++EK+K++ K+ KKKKK K K++ K +K K++ K+K+ +
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Score = 27.5 bits (61), Expect = 2.2
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + K+E+K+K++ K +KKKK++K K++ K +K K++ K+K K
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144
Score = 27.5 bits (61), Expect = 2.4
Identities = 17/46 (36%), Positives = 34/46 (73%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
E K+++KEK++ K++K+KKK+K K++ K +K K++ K+K+ +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 27.2 bits (60), Expect = 2.9
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K K+K+KEKK ++ + R+++KKR++ + K + KK KKK K
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Score = 27.2 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K K + K+++K+K++ K++K+KKK+K K++ K +K K++
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 27.2 bits (60), Expect = 3.0
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ K+K+++K+KK ++ + +++ KK+++ + K + KK KKK NK
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 26.8 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K + K+ K + K+++++K++ K++KKKKK+K K++ K++ K
Sbjct: 85 SKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 26.8 bits (59), Expect = 3.9
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ +++ +K + K K K+ K K+++K+K++ K++KKKK +
Sbjct: 74 DEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 26.0 bits (57), Expect = 7.2
Identities = 15/47 (31%), Positives = 36/47 (76%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ K+++++K++ K+++KKKK++ K++ K +K K++ K+K+ K K
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 26.0 bits (57), Expect = 7.7
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK K++ K++K K++ K K+ K K+K+K+KK ++ + ++++K + +
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRER 168
Score = 26.0 bits (57), Expect = 9.2
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
EK K+KK E+ + +++++K+++ R K + KK KKK KKK+
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 30.9 bits (70), Expect = 0.19
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E + ++ + K K +K K+ + +KK+K++ + K+K++K++ K
Sbjct: 387 EVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 29.4 bits (66), Expect = 0.64
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
E+A+ K KE+K K+++ KK+K++ + K+K++K ++KK
Sbjct: 396 EEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 28.6 bits (64), Expect = 0.95
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ + K +++K K+++ +KK+K + + K+K++K ++KK
Sbjct: 395 SEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.5 bits (69), Expect = 0.20
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+AKKK + KKK K K + K +K K K
Sbjct: 205 AEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
Score = 28.6 bits (64), Expect = 0.86
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E KKK + KKK + K K + K +K K
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKA 246
Score = 28.6 bits (64), Expect = 0.89
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E KK + E KKK + KKK + K K + K +K
Sbjct: 198 EAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240
Score = 28.6 bits (64), Expect = 0.89
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+KA + K+K + K K + K +K K +K
Sbjct: 209 KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 28.6 bits (64), Expect = 0.96
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A+ KKK + KKK + K K + K +K K K
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
Score = 28.6 bits (64), Expect = 1.0
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K + KKK + + K + K +K K +K
Sbjct: 208 KKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAA 253
Score = 28.6 bits (64), Expect = 1.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KKK E + KKK + KKK + K K + K K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+AKKK + + KKK KKK + K K + K +
Sbjct: 197 AEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+KA+ + K+K + KK+ + + K + K +K K
Sbjct: 201 KKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAA 247
Score = 27.1 bits (60), Expect = 3.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E A K E KKK + + KKK + KKK + K K
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEA 234
Score = 27.1 bits (60), Expect = 3.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+A K + KKK + KKK + KKK + K K + K
Sbjct: 189 AEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAK 235
>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 30.7 bits (70), Expect = 0.20
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 24 KLLKDSLSDRLSDRSRLEFISHD----ISDLVS------DDRISAGDFFDFLRLTESGSR 73
+L K+ LS+ S R + I D++ D +I+ G +E G
Sbjct: 388 RLSKEGLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANG-----RAFSEDGLE 442
Query: 74 ---KVFGPIHDIIEKAKK--KKKEKKKKKKKKRKKKKKRKKKKKKKK 115
+F + + A + + ++ +KK+ R+ +++ K
Sbjct: 443 ELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRSSK 489
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 30.9 bits (69), Expect = 0.21
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 69 ESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+SG R FGP + K +KK K+K R +K + K ++ + K KK+ +++
Sbjct: 359 KSGVRD-FGPCKAAKTASGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSR 417
Query: 129 NK 130
K
Sbjct: 418 AK 419
Score = 30.1 bits (67), Expect = 0.30
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 69 ESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+SG +KV +EK + K + + K KK+ R + KK + K ++ +KN
Sbjct: 379 KSGEKKVKRKAR--LEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRKN 435
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
D++E + + + K + KK+K R + + K+ + K K+ + +
Sbjct: 58 ADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.9 bits (69), Expect = 0.22
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I D I K + K +E+K++ + ++ K++ KK+K+++++ +K
Sbjct: 1017 IKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
Score = 28.6 bits (63), Expect = 1.1
Identities = 9/49 (18%), Positives = 30/49 (61%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ E+ K ++++++ + ++ K+++ KK+K+++++ +K K K
Sbjct: 1022 VKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Score = 28.2 bits (62), Expect = 1.5
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ + ++ K+++ KK K++++R +K K+ KK+ KK +
Sbjct: 1033 ERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 26.2 bits (57), Expect = 8.3
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I D EK + + ++ K+++ +K+K++ ++ +K K+ KK+ K +
Sbjct: 1026 IKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 30.7 bits (69), Expect = 0.24
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+KA KK KKK KK KK +K KK KK +K +
Sbjct: 1008 KKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 30.3 bits (68), Expect = 0.31
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKK---KRKKKKKKKKKKKKKKKKKKKNKNK 130
+KA KK KK KK+ KK K+ +K KK KK +K +
Sbjct: 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 30.0 bits (67), Expect = 0.37
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ ++KA + KKK KK KK KK KK KKK KK K+ +
Sbjct: 977 TVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVAR 1032
Score = 30.0 bits (67), Expect = 0.38
Identities = 20/50 (40%), Positives = 22/50 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+A KKK KK KK KK KK KKK KK KK + K
Sbjct: 988 TRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAK 1037
Score = 29.6 bits (66), Expect = 0.57
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ +KA KK KK KK KKK KK KK +K KK K
Sbjct: 996 VAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKK 1042
Score = 29.6 bits (66), Expect = 0.58
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ IEK + ++ ++ KK + KKK KK KK KK
Sbjct: 963 VASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKK 1009
Score = 29.2 bits (65), Expect = 0.74
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K KK+ KK K+ +K KK KK +K +K
Sbjct: 1006 AAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 28.4 bits (63), Expect = 1.3
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK--KKKKKKKNKNKIIK 133
+K KK KK KK KK KKK KK KK +K KK K +
Sbjct: 994 KKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPAR 1045
Score = 27.3 bits (60), Expect = 3.6
Identities = 22/51 (43%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK---KKKKKKKNKNKIIK 133
A KKK KK KK KK KK KKK KK KK +K K K
Sbjct: 991 AMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAK 1041
Score = 26.9 bits (59), Expect = 4.6
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
SG KV + + ++ KK + KKK KK KK KK KK KKK K
Sbjct: 965 SGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAK 1023
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 30.5 bits (69), Expect = 0.24
Identities = 15/44 (34%), Positives = 34/44 (77%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E+ +++K+EKK++++K K+++ ++++K++KKKK KK K+
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 28.6 bits (64), Expect = 1.1
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
++KE+KK++++K K++ ++++K++KKKK KK K+ + +N
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 30.5 bits (70), Expect = 0.26
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKK---------KKRKKKKKKKKKKKKKKKKK 124
D + K K K K + K KRK KK + KKK
Sbjct: 605 FDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 27.4 bits (62), Expect = 2.2
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K K K K K + R+ K+K KK + K
Sbjct: 614 PDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 27.0 bits (61), Expect = 3.9
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 79 IHDIIEKAKKKKKEKK------KKKKKKRKKKKKRKKKK-----------KKKKKKKKKK 121
+ ++E+AK+ ++ K K K K K K K+K KK
Sbjct: 589 LKQLVEQAKQSSEKYKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKT 648
Query: 122 KKKKKNKNK 130
+ N K
Sbjct: 649 NARCPNCKK 657
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 29.9 bits (68), Expect = 0.31
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKK----------KRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+KAKK KKEK+K++K+ RK + K +K ++ ++ ++++ + + K I
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIV 74
Score = 27.6 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKK-------KKKKKKKKKKKKKKKKNKNK 130
KKK KK KK+K++++K+ RK K+ ++ K +K ++ + N+
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNR 62
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 29.6 bits (67), Expect = 0.31
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKNKNKI 131
KK K K+ +K + KKKKKK+ N I
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKKDDNPI 110
Score = 27.7 bits (62), Expect = 1.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRK 102
I+++ +KAK K+ K + KKKK+K
Sbjct: 82 IYEVSKKAKGKRSRKNQTKKKKKK 105
Score = 26.9 bits (60), Expect = 2.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKK 113
E KK K KR +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 26.5 bits (59), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 99 KKRKKKKKRKKKKKKKKKKKK 119
+K K KR +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.1 bits (58), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 105 KKRKKKKKKKKKKKKKKKKKK 125
+K K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.1 bits (58), Expect = 5.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 100 KRKKKKKRKKKKKKKKKKKKK 120
KK K ++ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 25.7 bits (57), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 97 KKKKRKKKKKRKKKKKKKKKK 117
KK K K+ RK + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 25.4 bits (56), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 102 KKKKKRKKKKKKKKKKKKKKK 122
KK + K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.9 bits (68), Expect = 0.33
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ EK K + + ++ R ++ ++KKKKKKKKKKK++ ++ +
Sbjct: 62 VQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
Score = 28.7 bits (65), Expect = 0.72
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
++KEK + + ++ R ++ K+KKKKKKKKKKK+ + +
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWM 106
Score = 26.4 bits (59), Expect = 4.4
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+I + K+K ++ + ++ + ++ K+KKKKKKKKKKK++ ++
Sbjct: 58 EEIFVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 30.0 bits (68), Expect = 0.33
Identities = 7/48 (14%), Positives = 19/48 (39%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+KK+++ K + + K + +K K + + + +
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAV 811
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
EK K + E K K +K K + + +
Sbjct: 770 KEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGV 818
Score = 28.0 bits (63), Expect = 1.9
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++ K EK K + K +
Sbjct: 781 LKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 27.3 bits (61), Expect = 2.6
Identities = 6/43 (13%), Positives = 8/43 (18%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E K K +K K + K
Sbjct: 777 ELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVS 819
Score = 27.3 bits (61), Expect = 2.8
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+A K K +K K + K ++
Sbjct: 779 EALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 27.3 bits (61), Expect = 2.8
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K+KK+K K + K K +K K +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTD 802
Score = 26.9 bits (60), Expect = 4.1
Identities = 6/47 (12%), Positives = 10/47 (21%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E + + K K K K + K +
Sbjct: 773 ESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVS 819
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 30.0 bits (68), Expect = 0.33
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 63 DFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+F TE G+R E +K +K K K + ++K K +K K
Sbjct: 425 EFYNCTEGGARIKGTIELPFKE-VCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIK 483
Query: 123 KKKKNKNKIIK 133
K +
Sbjct: 484 KNNDFIKEFET 494
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 29.5 bits (67), Expect = 0.34
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 87 KKKKKEKKKKK--KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+K +K +K++K +K+ ++ +K K KK +K++++ + K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQK 83
Score = 26.5 bits (59), Expect = 4.6
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 84 EKAKKKKKEKKKK----KKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
EK +K++KE +K+ +K K K+ +K++++ + +K+ K
Sbjct: 43 EKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKPNFA 95
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 29.2 bits (66), Expect = 0.36
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ K+K +EK KK+ KR+KKK++KKKKKK KK KK++K+
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 28.9 bits (65), Expect = 0.51
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++K++EKK+K ++K KK+ +++KKK+KKKKKKK KK K + K
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 27.7 bits (62), Expect = 1.3
Identities = 21/47 (44%), Positives = 36/47 (76%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K + ++ ++K+++KKRK ++K KK+ K++KKK+KKKKKKK K
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106
Score = 26.5 bits (59), Expect = 3.2
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ ++ +++KK K ++K K++ K+++KK+KKKKKKK KK KK
Sbjct: 65 DEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 26.2 bits (58), Expect = 4.1
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ ++K KK+ K++K+K+KKK+KKK KK KK++K+ K ++
Sbjct: 76 KRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESS 122
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 0.36
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++K KK + ++K + +K +KK +K++K KK
Sbjct: 104 AALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 28.9 bits (64), Expect = 0.89
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
E A K+ KK ++ +RK +++K +KK +K++K K ++ +
Sbjct: 102 EDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDV 150
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 29.9 bits (67), Expect = 0.36
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 86 AKKKKKEKKKKKKKKRK----KKKKRKKKKKKKKKKKKKKKKKKKN 127
++ K +K KK KK R+ KKRKKK KK +KK+
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKS 651
Score = 27.2 bits (60), Expect = 3.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ K KK +K KK ++ K++KKK KK +K + +
Sbjct: 608 RGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDL 657
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 29.7 bits (67), Expect = 0.37
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
LT+ +F I + +AK K K K K KR K K +K + K+
Sbjct: 224 LTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSP 283
Query: 127 NKNK 130
+ K
Sbjct: 284 GRKK 287
Score = 28.9 bits (65), Expect = 0.69
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
KAK K K+ K K +K + K+ +KKK
Sbjct: 248 KAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.0 bits (68), Expect = 0.39
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
++K ++K ++ + + +KK ++ +K K K K KK KK
Sbjct: 102 KELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSE 150
Score = 29.6 bits (67), Expect = 0.52
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++K KK +EK ++ + + +KK++ +K K K K KK KK + + +
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEA 151
Score = 29.2 bits (66), Expect = 0.62
Identities = 12/49 (24%), Positives = 31/49 (63%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+A+ ++ +K+ KK +++ ++ + + +KK+++ +K K K K K+ K
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAK 142
Score = 28.8 bits (65), Expect = 0.87
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+I + ++ KKE KK ++K + + + +KK+++ +K K K K K
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
Score = 28.8 bits (65), Expect = 0.90
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ + + + ++ KK+ KK +++ ++ + + +KK+++ +K KNK
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 28.4 bits (64), Expect = 1.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK---------KKKKKNKN 129
+ + EK ++ + E +KK+++ K K K K KK KK KK K
Sbjct: 104 LKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKE 163
Query: 130 KIIK 133
K++K
Sbjct: 164 KLLK 167
Score = 28.1 bits (63), Expect = 1.8
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
E+ + + + ++ KK+ +K ++K ++ + + +KK+++ +K K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 26.9 bits (60), Expect = 3.8
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+E + + + + KK+ KK ++K ++ + + +KK++ K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.8 bits (68), Expect = 0.40
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 104 KKKRKKKKKKKKKKKKKKKKK 124
+K+R KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 0.40
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 97 KKKKRKKKKKRKKKKKKKKKK 117
+K++ KKKKKRKK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 0.41
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 105 KKRKKKKKKKKKKKKKKKKKK 125
+KR+ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 0.61
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 98 KKKRKKKKKRKKKKKKKKKKK 118
+K+R KKKK++KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 0.66
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 103 KKKKRKKKKKKKKKKKKKKKK 123
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 0.74
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 108 KKKKKKKKKKKKKKKKKKKNKN 129
+K++ KKKKK+KK KK + K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.0 bits (66), Expect = 0.79
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKN 127
++++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 29.0 bits (66), Expect = 0.86
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 95 KKKKKKRKKKKKRKKKKKKKK 115
+K++ K+KKK+K+ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 1.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 102 KKKKKRKKKKKKKKKKKKKKK 122
+K++ +KKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 92 EKKKKKKKKRKKKKKRKKKKK 112
EK++ KKKK++KK K+ + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 99 KKRKKKKKRKKKKKKKKKKKK 119
+KR+ KKK+K+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 1.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 110 KKKKKKKKKKKKKKKKKNKNKI 131
+K++ KKKKK+KK KK KI
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 27.1 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 88 KKKKEKKKKKKKKRKKKKKRK 108
+K++ KKKKK+KK KK + K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 3.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 89 KKKEKKKKKKKKRKKKKKRKK 109
+K+ KKKKK+K+ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 3.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 94 KKKKKKKRKKKKKRKKKKKKK 114
+K++ KK+KK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 26.7 bits (60), Expect = 3.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 96 KKKKKRKKKKKRKKKKKKKKK 116
+K++ +KKKK++K KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 26.7 bits (60), Expect = 4.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 100 KRKKKKKRKKKKKKKKKKKKK 120
++++ KK+KK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 26.7 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 91 KEKKKKKKKKRKKKKKRKKKK 111
++++ KKKKKRKK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 26.7 bits (60), Expect = 4.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 93 KKKKKKKKRKKKKKRKKKKKK 113
+K++ KKK+K+KK +K + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 26.3 bits (59), Expect = 6.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 113 KKKKKKKKKKKKKKNKNKIIKI 134
+K++ KKKKK+KK K ++ KI
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 26.0 bits (58), Expect = 9.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 87 KKKKKEKKKKKKKKRKKKKK 106
K++ K+KKK+KK K+ + +K
Sbjct: 734 KRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.0 bits (68), Expect = 0.43
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
++K+K KK +KR + + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 0.68
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
++KKK KK +K+ R + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 0.71
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+F EK K KK +K+ + + KKRK+ + +K++
Sbjct: 76 IFSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.4 bits (64), Expect = 1.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++KK+ KK +K+ + + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.4 bits (64), Expect = 1.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+EKKK KK K+ + + KK+K+ + +K+++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.0 bits (63), Expect = 1.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
++KKK KK +K+ R + KK+K+ + +K ++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.0 bits (63), Expect = 1.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KKK +K +KR + + KK+K+ + K +
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQR 119
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 29.6 bits (67), Expect = 0.44
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+AKKKKK+KKKK KK + + + + K
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Score = 28.1 bits (63), Expect = 1.2
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
++++ ++++ KKKKKKKK+K KK + + + +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEA 224
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E K + ++++ KKK+KKKKK+ KK +
Sbjct: 168 EVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTEL 214
Score = 26.2 bits (58), Expect = 6.8
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
P + +E K + +E++ KKKKK+KKKK +K + +
Sbjct: 161 PLNPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQ 220
Query: 135 N 135
Sbjct: 221 V 221
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 29.7 bits (67), Expect = 0.44
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E+ KKKK+ K K K+ KKKKK+ K K + KKK
Sbjct: 82 ERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Score = 28.1 bits (63), Expect = 1.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E ++++ +KKK+ K K K+ +KKKKK K K + K K
Sbjct: 77 ELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKK 123
Score = 28.1 bits (63), Expect = 1.2
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK ++++ KKKK+ K K K+ KKKKKK K K + K
Sbjct: 75 EKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPK 121
Score = 28.1 bits (63), Expect = 1.4
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+++ ++ KK+K+ K K ++ KK+KKK K K + K K++ I
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERIS 128
Score = 28.1 bits (63), Expect = 1.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E K+ ++E++ KKKK+ K K ++ KKKKKK K K
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAA 117
Score = 28.1 bits (63), Expect = 1.5
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E+ +K+ + +++ KKKKR K K K+ KKKKKK K K
Sbjct: 72 EEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAA 116
Score = 26.6 bits (59), Expect = 4.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ +++++ KKKK+ K + K+ KKKKKK K K K
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKK 122
Score = 26.6 bits (59), Expect = 4.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ +K+ +++++ KKK++ K K K+ KKKKKK K
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAA 117
Score = 25.8 bits (57), Expect = 6.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K+ +++++ KK+K+ K + K+ KKKKKK K K +
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPR 119
Score = 25.4 bits (56), Expect = 9.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E +K+ +++ + KKK++ K K K+ KKKKKK K K
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 29.2 bits (66), Expect = 0.55
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K E+K+K++ KKK K +K K+ +KK K K ++K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLK 197
Score = 28.5 bits (64), Expect = 0.80
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
D++ K ++K+KE+ KK+ K +K K+ +KK K K
Sbjct: 149 ADVVAKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAV 195
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 29.4 bits (66), Expect = 0.57
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K+FG I +KK E K K KK K +K KK +K K+N K I
Sbjct: 658 KIFGGPKHIFAISKKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEI 716
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.0 bits (65), Expect = 0.60
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+KA +K K K + +R KK ++KK++KKK KKKK + N ++
Sbjct: 40 DKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNPAQL 87
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 28.9 bits (65), Expect = 0.67
Identities = 14/42 (33%), Positives = 37/42 (88%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
E+AKK+ +E + KK K++++K++ +++K++KK+++++++K+K
Sbjct: 178 EEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 27.4 bits (61), Expect = 2.7
Identities = 12/49 (24%), Positives = 39/49 (79%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
P ++ ++ KK+ ++ + KK K++++K+ ++++K++KK+++++++K+K
Sbjct: 171 PERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 25.8 bits (57), Expect = 7.2
Identities = 10/38 (26%), Positives = 33/38 (86%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
KK K++++K++++R+K++K++++++++K+K ++ +K
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 28.6 bits (64), Expect = 0.71
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKK 113
KK+K K KK K K KK KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.6 bits (64), Expect = 0.93
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKK 126
KKKK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 1.00
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 109 KKKKKKKKKKKKKKKKKKNKNKI 131
KKKK K KK K K KK ++K K
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKA 113
Score = 28.3 bits (63), Expect = 1.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKN 127
KKK+ K KK K K KK + KKK
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKK 116
EKKKK K K+ K K +K + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKK 125
KKKK + KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKK 117
KKKK K +K K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 105 KKRKKKKKKKKKKKKKKKKKKKNK 128
KK+K K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKK 119
KKKK + KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
++K +KK+K K K+ K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 1.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKK 111
KKKK K KK K K KK + +KK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 2.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKK 124
+KKK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
++K +KKK+ K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.7 bits (59), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKK 123
K+KK K +K K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.7 bits (59), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 107 RKKKKKKKKKKKKKKKKKKKNKNK 130
+KKK K KK K K KK + K K +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.3 bits (58), Expect = 5.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+RK +KKKK K KK K K KK K +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 25.9 bits (57), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKR 107
+ +K K K K+ K K KK KKK R
Sbjct: 89 VEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 25.6 bits (56), Expect = 9.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRK 108
+EK KK K +K K K KK + KKK +
Sbjct: 89 VEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 29.0 bits (65), Expect = 0.72
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+IE+ K +K ++ + +K K++K+ +K + + K
Sbjct: 245 MIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAK 285
Score = 26.7 bits (59), Expect = 5.0
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKK-RKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
I ++ A ++ E+ K +K KR + +K K++K+ +K + +N ++ +
Sbjct: 234 IAEVEAIANQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAM 290
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.7 bits (64), Expect = 0.73
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
+ KK+ ++ ++ ++KKKK+ KKKK K
Sbjct: 67 ERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 28.3 bits (63), Expect = 1.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
KK + KK+ + + K+KKKKK KKKK K
Sbjct: 69 KKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 1.5
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+A++KK + KK+ + ++ K+KKKKK KKKK K
Sbjct: 65 QAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 27.1 bits (60), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
++KK + KK+ ++ K+KKKKK KKKK K + +
Sbjct: 67 ERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLLNFVTVE 114
Score = 25.6 bits (56), Expect = 8.6
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ + KK + K++ + ++ K+KKKKK KKKK K+ ++
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLLNF 110
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 28.8 bits (65), Expect = 0.74
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++KK+KK+KKK + + ++ KN K+ I
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRKLSLI 131
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 28.4 bits (64), Expect = 0.76
Identities = 15/48 (31%), Positives = 37/48 (77%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
IE+ +++K+ +K++K++K +K+K+ K +K++++K+ ++ +K KNK
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.5 bits (64), Expect = 0.82
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
E A K+EK ++KK+K + + +R++ K +K+K K + K
Sbjct: 28 PECALALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 28.6 bits (64), Expect = 0.85
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
EK K +K K K K+ KK + +KK + + + +KK
Sbjct: 109 EKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKK 151
Score = 27.4 bits (61), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ K K+ K K KK KK + +KK + + + +KK
Sbjct: 111 EGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 27.0 bits (60), Expect = 2.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
E KK+K K KK KK +KK + + + +KK
Sbjct: 111 EGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 26.3 bits (58), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K++K+ K KK K K KK KK + +KK + + + K
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEK 150
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 28.9 bits (65), Expect = 0.87
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
VFG I E K+ K E++ K K KR KKK
Sbjct: 264 HYVFGKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 28.1 bits (63), Expect = 1.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K K+E+ KK+ K ++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 27.3 bits (61), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
FG H + K K+++ KK+ K ++R + K K+ KKK
Sbjct: 260 FGQQHYVFGKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K +K+++ KK+ K +++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 25.8 bits (57), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K KE++ KK+ K +++ K K K+ KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 28.8 bits (65), Expect = 0.90
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKK---KRKKKKKKKKKKKKKKKKKKKNKN 129
+ G I E A+ +K+ +K +K+ R +KK + K ++ +K+K+K + +
Sbjct: 804 LPLAGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQV 863
Query: 130 KIIKIN 135
K+ K+
Sbjct: 864 KLAKLE 869
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 28.9 bits (65), Expect = 0.90
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ P+ +I KAK+ + +K+ K+K++ + K + + KK K+ +K K K
Sbjct: 803 EIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEK 859
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 28.8 bits (65), Expect = 0.92
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
DI E K K+ + +KKK K ++K KK++KK+K K+++K
Sbjct: 632 DISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEK 677
>gnl|CDD|234299 TIGR03661, T1SS_VCA0849, type I secretion C-terminal target
domain (VC_A0849 subclass). This model represents a
C-terminal domain associated with secretion by type 1
secretion systems (T1SS). Members of this subclass do
not include the RtxA toxin of Vibrio cholerae and its
homologs, although the two classes of proteins share
large size, occurrence in genomes with T1SS, regions
with long tandem repeats, and regions with the
glycine-rich repeat modeled by pfam00353 [Cellular
processes, Pathogenesis].
Length = 89
Score = 27.7 bits (62), Expect = 0.93
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 46 DISDLVSDDRISAGDFFDFLRLTESG 71
D+SDL+S + + + + ++L + SG
Sbjct: 15 DLSDLLSGENVDSANLDNYLDFSTSG 40
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 28.8 bits (65), Expect = 0.95
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ K ++ ++ +K++K+ ++++ ++ K K KK K++ K ++
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLE 288
Score = 27.2 bits (61), Expect = 2.7
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK-------KKKKNKNKIIKIN 135
+K++KE K+++ R+ K K KK K + K+ +K ++ + K +
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 28.8 bits (65), Expect = 0.97
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 83 IEKAKKKKKEKKKKKKKK-------RKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KA+ + E++KKK ++ R+ + +R+K ++ + KK + + K+K+ +
Sbjct: 433 QAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAV 488
Score = 28.4 bits (64), Expect = 1.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKK--------RKKKKKKKKKKKKKKKKKKKNKNK 130
+E+ K ++ + KK + R K K R K KK + K + N
Sbjct: 462 LEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNS 517
>gnl|CDD|232797 TIGR00045, TIGR00045, glycerate kinase. The only characterized
member of this family so far is the glycerate kinase
GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after
glyoxylate carboligase and 2-hydroxy-3-oxopropionate
reductase (tartronate semialdehyde reductase) in the
conversion of glyoxylate to 3-phosphoglycerate (the
D-glycerate pathway) as a part of allantoin degradation
[Energy metabolism, Other].
Length = 375
Score = 28.8 bits (65), Expect = 0.97
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 4 ELLPRGRNRNPLWEKFFAVNKLLKDSLS 31
EL+P + RNPL + +L++ +L
Sbjct: 96 ELVPAEK-RNPLQTSSYGTGELIRHALD 122
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 28.7 bits (64), Expect = 0.99
Identities = 10/52 (19%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 83 IEKAKKKKKE-KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+AK +KKE +K++ +R+ ++ ++++ + + ++ K K K +
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLI 391
Score = 27.1 bits (60), Expect = 3.3
Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 84 EKAKKKK-KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
KA+KK+ +K++ +++ ++ ++++ + + ++ K K K I
Sbjct: 343 AKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASP 395
Score = 26.7 bits (59), Expect = 4.3
Identities = 6/50 (12%), Positives = 26/50 (52%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ +K + K +KK+ +K++ ++ ++ ++++ + + + +K
Sbjct: 335 TRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVK 384
Score = 26.0 bits (57), Expect = 9.2
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK R +K K +KK+ +K++ +++ N+
Sbjct: 333 KKTRTAEKNEAKARKKEIAQKRRAAEREINREA 365
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+E +++K E +K+ K ++++ RK +K+ KK KK +
Sbjct: 87 TVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 26.6 bits (59), Expect = 3.0
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +++K + RK+ K ++++ +K +K+ KK KK
Sbjct: 85 NHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKA 124
Score = 26.6 bits (59), Expect = 3.1
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+ +++K + +K+ K ++++ +K +K+ KK KK +
Sbjct: 87 TVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 26.2 bits (58), Expect = 3.9
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
++EK + +K+ K ++ + +K +K+ KK KK +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E +++K + +K+ + ++++ +K +K+ KK KK +
Sbjct: 83 TVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 25.4 bits (56), Expect = 7.1
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ +E+K + +K+ K ++++ +K +K+ KK KK +
Sbjct: 86 HTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
>gnl|CDD|221450 pfam12166, DUF3595, Protein of unknown function (DUF3595). This
family of proteins is functionally uncharacterized.This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 578 and 2525 amino
acids in length.
Length = 420
Score = 28.5 bits (64), Expect = 1.1
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 60 DFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKK 109
D FD+ +L + I+ + K K++ +KK + +KK K K
Sbjct: 23 DLFDWFKLED---------IYANLYIIKCKRQSEKKLPPPRGQKKPKLVK 63
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.6 bits (65), Expect = 1.1
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+++ K++ + K+ ++K+KK + I I
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITI 545
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+K K+K++ ++RK+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 26.6 bits (59), Expect = 4.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+K K+K++ ++K+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 26.6 bits (59), Expect = 4.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
E+ K+KE+ +++K KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 25.8 bits (57), Expect = 6.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
A++K ++K++ + +K+ KK +K + KKKK
Sbjct: 157 AERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 25.8 bits (57), Expect = 8.5
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ K+K++ +++K KK +K + KK K
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 28.5 bits (65), Expect = 1.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKK 104
I+ A+ + + KK K+KK+
Sbjct: 376 AIKAAQARLRAAKKVKRKKKTSG 398
Score = 27.4 bits (62), Expect = 2.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRK 108
+ EKA K + + + KK ++KKK
Sbjct: 372 LAEKAIKAAQARLRAAKKVKRKKKTSG 398
>gnl|CDD|132074 TIGR03029, EpsG, chain length determinant protein tyrosine kinase
EpsG. The proteins in this family are homologs of the
EpsG protein found in Methylobacillus strain 12S and are
generally found in operons with other Eps homologs. The
protein is believed to function as the protein tyrosine
kinase component of the chain length regulator (along
with the transmembrane component EpsF).
Length = 274
Score = 28.3 bits (63), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 5 LLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISH 45
LL R+P+ + F +++ + LSD L+ RS LE I+H
Sbjct: 136 LLIDANLRDPVQHRNFKLSE--QRGLSDILAGRSDLEVITH 174
>gnl|CDD|235663 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 36 DRSRLEFISHDISDLVS----------DDRISAGDFFDFLR 66
D RL + I +LV + DF DFL
Sbjct: 639 DPRRLPALREQILELVRAANLDRDLGLSEAPDEDDFDDFLL 679
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 1.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
++ K+KR+ KK+KKKK KK K
Sbjct: 339 LSHSPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 103 KKKKRKKKKKKKKKKKKKK 121
K+K+ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 1.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 106 KRKKKKKKKKKKKKKKKKK 124
KRK++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 104 KKKRKKKKKKKKKKKKKKK 122
K+KR+ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 27.7 bits (62), Expect = 2.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 108 KKKKKKKKKKKKKKKKKKKN 127
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 27.7 bits (62), Expect = 2.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 100 KRKKKKKRKKKKKKKKKKK 118
KRK++ +K+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 27.3 bits (61), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 108 KKKKKKKKKKKKKKKKKKKNKNKII 132
+K++ KK+KKKK KK K N +I
Sbjct: 357 RKREGDKKQKKKKSKKLKLTFNPLI 381
Score = 26.9 bits (60), Expect = 3.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
++ K++++ KK+KKKK KK K
Sbjct: 342 SPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 25.8 bits (57), Expect = 8.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 110 KKKKKKKKKKKKKKKKKNKN 129
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 28.5 bits (63), Expect = 1.3
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ K+K KK++ +++++K+ K K+KK KK K KK+ + + +K
Sbjct: 525 VNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLK 575
Score = 25.8 bits (56), Expect = 8.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E ++ K K K KK++ +++ +KK K K+KK KK K
Sbjct: 517 ETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYS 563
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 28.2 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKK-KKKKKKKKKKKKKKKKKNKN 129
K+ +E K K K RK + + KKKKKN+N
Sbjct: 257 KQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRN 300
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 28.2 bits (63), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
KK KK ++K + K K K KK+ K + N I
Sbjct: 445 APKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNNI 485
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 28.1 bits (63), Expect = 1.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
++ K K+ EK++ KK + K+K K + KK+++ K K
Sbjct: 195 FLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G.
This family includes attachment proteins from
respiratory synctial virus. Glycoprotein G has not been
shown to have any neuraminidase or hemagglutinin
activity. The amino terminus is thought to be
cytoplasmic, and the carboxyl terminus extracellular.
The extracellular region contains four completely
conserved cysteine residues.
Length = 263
Score = 28.1 bits (62), Expect = 1.5
Identities = 16/56 (28%), Positives = 19/56 (33%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
I EK K K KK K K KK K + K K+ + K N
Sbjct: 178 KRIPEKKPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTN 233
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 27.9 bits (63), Expect = 1.5
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
I+ K + E +K +K +++ ++ +K
Sbjct: 43 IDIDKIAEIELLEKGEKPKQEPPPKEIEKDPGLPN 77
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 27.9 bits (62), Expect = 1.6
Identities = 9/36 (25%), Positives = 28/36 (77%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
++ +EK ++++++RK++ K K ++++K K++ K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 26.4 bits (58), Expect = 6.8
Identities = 9/32 (28%), Positives = 25/32 (78%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
EK +++++E+K++ K K ++++K K++ K++
Sbjct: 10 EKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 26.0 bits (57), Expect = 7.1
Identities = 9/37 (24%), Positives = 28/37 (75%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+ +A++K + +++++K++ K K +R++K K++ K++
Sbjct: 5 LRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 27.8 bits (62), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
E + K KK K KKRK+ K++ K K
Sbjct: 348 EAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKA 380
Score = 27.1 bits (60), Expect = 3.7
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ K KK+K KKRK+ K + K K K
Sbjct: 349 AARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 25.9 bits (57), Expect = 7.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K KKEK KK+K+ K++ K K K
Sbjct: 349 AARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 25.9 bits (57), Expect = 7.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K + + R K KK K KK+K+ K++ K
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKA 376
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 28.0 bits (62), Expect = 1.7
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E KK K +K K + R K + ++KKK+K++ KK K K + KI
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKI 586
Score = 27.6 bits (61), Expect = 2.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K K E + K + ++KKKRK++ KK K KK++K +
Sbjct: 547 IEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKV 591
Score = 27.3 bits (60), Expect = 2.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K +++ KKK+K++ KK + KK++K K+K KK + K
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAK 605
Score = 27.3 bits (60), Expect = 3.0
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KA +K K + + K R+++KK++K++ KK K KK++K K K+
Sbjct: 545 KAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDG 593
Score = 25.7 bits (56), Expect = 9.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E+ KK K +K K + + K R+++KKK+K++ KK K K + I
Sbjct: 538 EEIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIG 587
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.1 bits (63), Expect = 1.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
DI KK + K + + +K KKKKKK+KKK+++ K+ + I+I
Sbjct: 716 DISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 27.6 bits (62), Expect = 1.7
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KKKK K+ K K KKK +++ + +++K+KKK K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
EK K+ +K K+ +K+ R+ ++ KK KK ++K+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 26.7 bits (60), Expect = 1.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I ++ +KA + +KKK++K+ K K+ KK +++K + K
Sbjct: 44 IEEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 27.7 bits (62), Expect = 2.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
E+AK + ++ K KKK+ + K KK K + KK K K+
Sbjct: 564 PVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKLKLG 616
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 27.5 bits (61), Expect = 2.1
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K+ + +K++ + KK++ + K + KKKKK KK+K + K++K
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVK 86
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 27.8 bits (62), Expect = 2.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
KKKKK+KKK K+ + KK ++KK+ ++ N
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTN 57
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 27.6 bits (62), Expect = 2.2
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+A++ + K+ + KR + + + K+ K+K K+ + +++
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELD 99
Score = 27.2 bits (61), Expect = 2.7
Identities = 6/61 (9%), Positives = 29/61 (47%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
R D + + +++++ ++ ++ + ++ + K+ + K+ + ++ + K +
Sbjct: 21 RGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKEL 80
Query: 133 K 133
K
Sbjct: 81 K 81
>gnl|CDD|233080 TIGR00665, DnaB, replicative DNA helicase. This model describes
the helicase DnaB, a homohexameric protein required for
DNA replication. The homohexamer can form a ring around
a single strand of DNA near a replication fork. An
intein of > 400 residues is found at a conserved
location in DnaB of Synechocystis PCC6803, Rhodothermus
marinus (both experimentally confirmed), and
Mycobacterium tuberculosis. The intein removes itself by
a self-splicing reaction. The seed alignment contains
inteins so that the model built from the seed alignment
will model a low cost at common intein insertion sites
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 434
Score = 27.4 bits (62), Expect = 2.2
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 39 RLEFISHDISDLVSDDRISAGDFFD-----FLRLTESGSRKVFGPIHDIIEKAKKKKKEK 93
RL +I +L D + D + ES + F I +++++ ++ +E
Sbjct: 109 RLIQAGTEIVELAYDPEGDVEELLDEAEQKIFEIAESRTSGGFKSIKEVLKETVEEIEEL 168
Query: 94 KKKKK 98
++K
Sbjct: 169 YERKG 173
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 27.6 bits (61), Expect = 2.2
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
EK KK K+ K KK K K KK K KK K K K + +
Sbjct: 15 EKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVK 66
Score = 25.7 bits (56), Expect = 9.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ KK +K K+ K KK K K KK K KK K K K+
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKV 63
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 27.3 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 29/32 (90%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
+E+A+++++E+K+++KK+ K++K+R+K+ +K
Sbjct: 178 LEEAERRRREEKERRKKQDKERKQREKETAEK 209
Score = 26.2 bits (58), Expect = 5.8
Identities = 10/45 (22%), Positives = 33/45 (73%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ A+ + ++ ++ +++R+++K+R+KK+ K++K+++K+ +K
Sbjct: 165 EQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 27.5 bits (61), Expect = 2.3
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKK--KKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ I EK + K++ + R+ K RKK ++ K+ +K+ +
Sbjct: 336 LDSIHEKRYHWTWKYFKERCEDRRAYMKIIRKKYLNEQLSADLSKELEKRELTYDLI 392
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 27.3 bits (61), Expect = 2.3
Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 31/87 (35%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKK-------------------------------R 107
A+KKK KKK K KK +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLP 205
Query: 108 KKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K + K K KK K+ K K+
Sbjct: 206 KWEGKTKNKKSLKEYKDLIKLLDSGKL 232
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 27.3 bits (60), Expect = 2.3
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 79 IHDIIEKAKKKKKEK--KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
I+ I +A K+K+++ KK KK K K + KK++ + ++ ++ N
Sbjct: 199 IYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRSTTVRRN 257
Score = 25.8 bits (56), Expect = 7.3
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KK KK K + + KK++ + + +N+I
Sbjct: 217 VSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRSTTVRRNRI 259
>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 27.5 bits (61), Expect = 2.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ D++E K + + K K KR+ K K K+K+ K+K + +
Sbjct: 168 LEDVMESLDKPEVKFTKHKNNKRRYDDKETGKLLKRKQPSKEKDRITR 215
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 27.3 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
KK++ +++ + K+ K KKK KKK+K K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 25.8 bits (57), Expect = 7.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
E KK+K R++ + K+ K KKK KKK+K K
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFK 37
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 27.2 bits (61), Expect = 2.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ K K+K+ K+KKK+KK+KK +I +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWARIAEA 403
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 27.2 bits (61), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
F PI++ E +KEKKK K+ KK K +K K ++
Sbjct: 88 FTPIYEYFEA----EKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 27.2 bits (61), Expect = 2.5
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 32 DRLSDRSRLEFI--SHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKK 89
L D LE + ++S L+S D F L+ GP +++A+KK
Sbjct: 163 GSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKY-------FPGPHGRKLKRARKK 215
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKK 113
K+ K ++R++ KK +
Sbjct: 216 IKDLLDKLIEERRETLDSAKKSPR 239
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 27.2 bits (61), Expect = 2.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
H +KA+K + K K KKR K+K + KK K +++ K+K +
Sbjct: 30 HKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQKVDDKVPE 80
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 27.4 bits (61), Expect = 2.7
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
RK F ++ + K K K++ + + ++ KK+ +K+ + ++ K K
Sbjct: 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 27.4 bits (61), Expect = 2.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKK--KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
+F I + K K+ KKKK KK ++ K+ ++K K K++ K +
Sbjct: 84 IFDAILLFLTKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVT 143
Query: 133 KI 134
K
Sbjct: 144 KT 145
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 27.3 bits (61), Expect = 2.7
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
KK++KK+K++++ K + KK+K+K KK KN II
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVII 661
Score = 26.6 bits (59), Expect = 5.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K KK+ KKK + K K K K KKKKKK+K + +
Sbjct: 502 SVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 26.2 bits (58), Expect = 6.3
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
KK+KK++K+K+R K + KK+K+K KK KN
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKN 658
Score = 26.2 bits (58), Expect = 6.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K KK+ KKK K + K K K KKKKKK+
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSID 545
Score = 26.2 bits (58), Expect = 6.8
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+ KK+ KKK K K K K K KKKKKK+K + + I
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLI 551
Score = 26.2 bits (58), Expect = 7.2
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + KK+ K+K K K K K K KKKKK + I +
Sbjct: 498 KTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 25.8 bits (57), Expect = 9.7
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
KK++KK+K+K++ K + KK+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 27.4 bits (61), Expect = 2.7
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
H + K ++ KK K K K K KK KK +K
Sbjct: 169 HLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
Score = 26.3 bits (58), Expect = 5.4
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K KE ++ KK K +K K K KK K
Sbjct: 172 KAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKM 212
Score = 25.9 bits (57), Expect = 7.0
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
K K+ ++ KK + +K K K KK KK
Sbjct: 171 LKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKM 212
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 26.8 bits (60), Expect = 2.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K K+KK K RK K+ + + K +KKK ++ +K ++ ++
Sbjct: 2 VTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDRL 51
>gnl|CDD|234043 TIGR02871, spore_ylbJ, sporulation integral membrane protein YlbJ.
Members of this protein family are found exclusively in
Firmicutes (low-GC Gram-positive bacterial) and are
known from studies in Bacillus subtilis to be part of
the sigma-E regulon. Mutation leads to a sporulation
defect, confirming that members of this protein family,
YlbJ, are sporulation proteins. This protein appears to
be universal among endospore-forming bacteria, but is
encoded by a pair ORFs distant from eash other in
Symbiobacterium thermophilum IAM14863 [Cellular
processes, Sporulation and germination].
Length = 362
Score = 27.3 bits (61), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K++KRK KKKK + K K K +K
Sbjct: 162 YKRRKRKILSKKKKTFHIIRLKSKFPIGKTLK 193
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 27.3 bits (61), Expect = 2.8
Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 30 LSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSR--KVFGPIHDIIEKAK 87
LS R + S+L+F D + D + A L+ +++ R ++ G ++IE A
Sbjct: 192 LSKRFEELSKLKF------DFIFVDDVDA-----ILKASKNVDRLLRLLGFSEEVIESAY 240
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ K ++K +KR ++ + + ++ +++++KK++K
Sbjct: 241 ELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 27.1 bits (61), Expect = 2.8
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKK 123
+ R++K+K + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 27.1 bits (61), Expect = 3.3
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKK 125
R +++KRK + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 26.7 bits (60), Expect = 5.1
Identities = 3/25 (12%), Positives = 15/25 (60%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKK 124
+ +++K++ + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 26.3 bits (59), Expect = 6.0
Identities = 4/26 (15%), Positives = 16/26 (61%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKK 126
R+ +++++K + K++++K+
Sbjct: 478 RRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 26.3 bits (59), Expect = 6.2
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKK 121
+ ++RK+K + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 25.9 bits (58), Expect = 7.1
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKKN 127
R++ ++RK+K + K++++K
Sbjct: 477 RRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 25.9 bits (58), Expect = 7.4
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKK 119
+ +++KRK + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 25.9 bits (58), Expect = 8.8
Identities = 4/25 (16%), Positives = 15/25 (60%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKK 117
+ +++K+K + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 25.9 bits (58), Expect = 9.4
Identities = 3/25 (12%), Positives = 15/25 (60%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKK 120
+ +++++K + K++++K+
Sbjct: 479 RTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 26.8 bits (59), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKKN 127
KK KK ++ +KK +KK+KK N
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 26.4 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKK 125
K+ KK ++ +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 26.4 bits (58), Expect = 3.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKK 119
KK KK ++ +K+ +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 26.0 bits (57), Expect = 4.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKK 117
K KK + +KK +KK+KK
Sbjct: 53 KPKKISAEEAEKKLLQKKEKKALTN 77
Score = 25.2 bits (55), Expect = 8.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKK 111
K KK ++ +KK +KK+K+
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 25.2 bits (55), Expect = 8.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKK 123
KK +K + +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 25.2 bits (55), Expect = 8.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKK 124
KK KK + +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 25.2 bits (55), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKK 121
KK KK ++ KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 26.7 bits (60), Expect = 2.9
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K++KKKKKKKK + + KKKK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.7 bits (60), Expect = 3.3
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
++D K KKKKK+KKK+ + +KKKK +++K+ +K
Sbjct: 76 LNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.7 bits (60), Expect = 3.5
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
K+KKKKKK+KK+ + ++KKKK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.0 bits (58), Expect = 5.6
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K+KKKK+KKKK+ + ++KKKK +++K+ K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.0 bits (58), Expect = 5.7
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K+KK+KKKKK++ + ++KKKK +++K K +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
Score = 26.0 bits (58), Expect = 5.8
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+KKKKKKK+K+ + ++KKKK +++K+ +K ++
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLA 123
Score = 26.0 bits (58), Expect = 6.0
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K KKKKKKKK++ + +KKKK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.0 bits (58), Expect = 6.1
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
K+KKK+KKKKK+ + ++KK+K +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 26.0 bits (58), Expect = 6.4
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K+KK+KKKKKK+ ++K+KK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 25.6 bits (57), Expect = 7.2
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+KKK+KKKKK + ++KKKK +++K+++ +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
Score = 25.2 bits (56), Expect = 8.9
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+KKKK+KKKK+ + ++KKK+ +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 26.1 bits (58), Expect = 2.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K+ +++++K K+K + KKKKK+K KKK+
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 24.9 bits (55), Expect = 8.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+++E+K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 27.3 bits (61), Expect = 3.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K++KK R K R++ ++KKK +K + ++
Sbjct: 49 KREKKPYPRPMKLLRREAREKKKLRKLQPER 79
Score = 26.5 bits (59), Expect = 4.4
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ K++K+ + K +++ ++KKK K + +
Sbjct: 45 RPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERP 80
Score = 26.1 bits (58), Expect = 7.6
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 93 KKKKKKKKRK--KKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K++KK + K +R+ ++KKK +K + ++ KN
Sbjct: 48 SKREKKPYPRPMKLLRREAREKKKLRKLQPERPLDPPKN 86
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 27.1 bits (60), Expect = 3.1
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
KA K E KK K+ + K KK KKKK
Sbjct: 165 AKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKK 206
Score = 25.5 bits (56), Expect = 8.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K + KK KK K K KK KKKK K
Sbjct: 168 APKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 27.2 bits (61), Expect = 3.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKK 112
A + + ++KK KK K+ KK K+KK+
Sbjct: 330 AARLARAERKKWKKISKQVKKMKRKKR 356
>gnl|CDD|216205 pfam00937, Corona_nucleoca, Coronavirus nucleocapsid protein.
Length = 346
Score = 27.0 bits (60), Expect = 3.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 81 DIIEKAKKK--KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
++ K K+K KK R KK + KK+ K + K+ K +N
Sbjct: 194 AVLAALAKLGFGKQKSSSKKPSRVTKKSAAEAAKKQLNKPRWKRTPNKGEN 244
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 26.9 bits (60), Expect = 3.2
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 80 HDIIEKAKKK-KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ +K ++ +K+ K+ KK+K+KK+ K KK +++ KK+ K
Sbjct: 26 KELYDKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKT 81
Score = 26.9 bits (60), Expect = 3.5
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
IE+ +K+ KE KKKK++K+ K KK +++ KK ++ K K
Sbjct: 33 IERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKK 83
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 27.3 bits (60), Expect = 3.3
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ KK E ++ K + K+ KKKK KK K+ K+ + +NK+K
Sbjct: 220 EEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 27.0 bits (60), Expect = 3.3
Identities = 12/66 (18%), Positives = 23/66 (34%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ + K F P H+ I K KK + ++ K KK+ + K
Sbjct: 88 NSNGKRFTPAHEYILWFSKTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDF 147
Query: 130 KIIKIN 135
++ +
Sbjct: 148 PRVQPS 153
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 27.0 bits (60), Expect = 3.3
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK-NKIIKI 134
++ +IE +++ +++ K K + K + KKK K + ++KI
Sbjct: 29 MNKVIELKRERAADRRGDKSGKEELTIVGKHSTIEGAKKKAHVNGVFLGKLDFLLKI 85
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 26.3 bits (58), Expect = 3.4
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I DI KK+KK+KK+ K R K K+ +KK KKK + + ++ K +
Sbjct: 13 DIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRR 63
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 26.9 bits (60), Expect = 3.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
G + A K +K K K+ K+R K+K
Sbjct: 316 GGYNAEDVLATLSLPTKAEKNKYSIKEIKRRLKEK 350
Score = 26.5 bits (59), Expect = 5.9
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 111 KKKKKKKKKKKKKKKKNKNKIIK 133
K +K K + +I +
Sbjct: 323 VLATLSLPTKAEKNKYSIKEIKR 345
Score = 25.7 bits (57), Expect = 9.1
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K +K K K+ K++ K K
Sbjct: 324 LATLSLPTKAEKNKYSIKEIKRRLKEKGFA 353
Score = 25.7 bits (57), Expect = 9.9
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+ K ++ K K+ K++ K+K
Sbjct: 320 AEDVLATLSLPTKAEKNKYSIKEIKRRLKEK 350
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 26.8 bits (60), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
I + +++KEKKK K+ KK K +K+K ++
Sbjct: 88 TPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 25.7 bits (57), Expect = 8.1
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+++++KKK K++KK K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 27.2 bits (61), Expect = 3.6
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
+I K + K ++ + K+ K+ ++ KKK + + K +I
Sbjct: 719 EIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIG 773
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 26.6 bits (59), Expect = 3.6
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E+++K++KE K+ ++K K K++KK+KK+KK +K KKK K
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
Score = 25.9 bits (57), Expect = 7.2
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ K+ KE ++K+ K KK+KK KK+KK +K KKK K
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
Score = 25.5 bits (56), Expect = 9.5
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K K+ E+K+ K K++KK+K++KK +K KKK K K K K
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATK 148
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 26.9 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKK 110
I DI++ KK K KK+ +K K+ +K+ K+
Sbjct: 592 KIRDILDSVYKKDKLSKKELEKLIKELEKQMKE 624
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 26.5 bits (59), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
HD + KKEK+K +K +++ + K ++ K K
Sbjct: 31 HDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 26.9 bits (60), Expect = 3.8
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 61 FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKR--KKKKKKKKKKK 118
FF F + ++ + I ++ ++ + +K +K K++ +KKKKK +K
Sbjct: 100 FFKFGKKFFGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEK 159
Query: 119 KKKKKKKKNKNKIIKI 134
++K N + I +
Sbjct: 160 TNEEKSLLNFSWIAAL 175
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 27.1 bits (60), Expect = 3.8
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +++ K +KE KKK K+ + + K++K++K+KK KK+
Sbjct: 116 LALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|235222 PRK04125, PRK04125, murein hydrolase regulator LrgA; Provisional.
Length = 141
Score = 26.5 bits (59), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKK 125
K +K K+ KK+KK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 25.8 bits (57), Expect = 6.4
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKR 107
I+ K +K+K++KK+KK K + ++ +
Sbjct: 116 ILGKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 25.4 bits (56), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKK 119
K +K K+ KK KK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 26.9 bits (59), Expect = 4.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 63 DFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKR 107
D+ R + RK I+KA+ KK+ K +KK+ +++K+
Sbjct: 532 DYFRHNKPPKRKG-------IKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/61 (13%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK-----KKKKKKKKKKKKKNKNKIIK 133
++ I + + K+E ++K+++ + K+ +++ + +K++ + +K +++I +
Sbjct: 73 LNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKR 132
Query: 134 I 134
Sbjct: 133 T 133
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 26.8 bits (60), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 82 IIEKAKKKKKEKKKKKK------KKRKKKKKRKKKKKKKKKKKKKKK 122
I KA K K K K ++ KK K+++++KKK K K K
Sbjct: 249 IALKAPKILKYVDKLKIDGWEWLEELISGKKEKEEEEEKKKIKPKDK 295
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 27.1 bits (59), Expect = 4.2
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
IEK +K +E+++ +K+++ KK K K KK+ KK KK K+ I
Sbjct: 434 IEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAI 482
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 26.8 bits (60), Expect = 4.4
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKK 112
I+EK K + KK + +KK+
Sbjct: 335 KIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 26.9 bits (59), Expect = 4.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKK 123
K R + K KK KKKK KKK+ K
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHK 139
Score = 26.5 bits (58), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 91 KEKKKKKKKKRKKKKKRK 108
K+KK KKKK KKK+ K
Sbjct: 122 KDKKNKKKKSAKKKEAHK 139
Score = 26.5 bits (58), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKK 104
+E K KK +KKK KKK K
Sbjct: 118 VESWKDKKNKKKKSAKKKEAHK 139
Score = 26.5 bits (58), Expect = 6.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K + + K KK KKKK KKK+ +K +I
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQI 142
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 26.5 bits (59), Expect = 4.6
Identities = 8/42 (19%), Positives = 28/42 (66%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ +++E++K+ +++R++ + K + ++ + K+K K+ +K
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 25.4 bits (56), Expect = 9.6
Identities = 8/40 (20%), Positives = 29/40 (72%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+E+ +++K++++++++ R K + ++ + K+K K+ +K+
Sbjct: 122 LEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 26.7 bits (59), Expect = 4.6
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
EK K K ++ ++ + K++KK + +++ KK +K ++ KK +KI
Sbjct: 13 AEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKSGIFSKIF 62
Score = 25.5 bits (56), Expect = 9.9
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++AK K ++ ++ + K+ KK ++ +++ KK +K ++ KK
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 26.7 bits (59), Expect = 4.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKK 114
KEK KK KK ++K+ + K
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESK 355
Score = 25.9 bits (57), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K++ KK KK K+K+ ++K++ I
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQCI 359
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 26.5 bits (59), Expect = 5.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKK 109
EKKK++KK+R+K+ K +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.5 bits (59), Expect = 5.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKK 114
+KKK++KK++RK+ K+ +
Sbjct: 178 SSDSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 6.3
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKK 110
+KKK++KK+++K+ ++ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 6.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKK 115
+KK+++KK+R+K+ K+ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 6.7
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKK 116
+K+K++KK+++K+ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 6.9
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKK 120
+KKK++KK+++K+ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 6.9
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
KKK++KK+++K+ K+ ++ + +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDDD 204
Score = 25.7 bits (57), Expect = 9.0
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKK 113
+KKK+RKK+++++ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
Score = 25.7 bits (57), Expect = 9.2
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKK 111
+ +KKK++K++++K+ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
Score = 25.7 bits (57), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKK 119
+KKK+RKK+++K+ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 26.7 bits (59), Expect = 5.1
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
E + ++R + K + +++ KN+ IK+
Sbjct: 461 EIPGAGDAVTIDPELERRSPNSADDIEYILKGLSYRAEERTAKNEAANIKLQ 512
Score = 25.9 bits (57), Expect = 8.3
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K K + +++ + KK K KK + + K + K
Sbjct: 411 AKLLKTTRPGLEEESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEI 462
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 26.4 bits (58), Expect = 5.2
Identities = 6/51 (11%), Positives = 22/51 (43%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ +++ KK+++ +K ++ + K K +++ + I
Sbjct: 109 RVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPVSDI 159
Score = 26.4 bits (58), Expect = 5.2
Identities = 7/50 (14%), Positives = 21/50 (42%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
KA+ + + +++ KK+ + +K ++ + K K + +
Sbjct: 107 KARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPV 156
Score = 25.6 bits (56), Expect = 8.6
Identities = 7/49 (14%), Positives = 23/49 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
E + + ++ +++ KKR++ +K ++ + K K + ++
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVH 153
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 26.6 bits (59), Expect = 5.2
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 2 SQELLPRGRNRNPLWEKFFAVNKLLKDSLSDR-LSDRSRLEFISHDISDLVSDDRISAGD 60
S+EL P P + + +L DS S R L + ++ S + +S +
Sbjct: 94 SRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEE 153
Query: 61 FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+ES K G ++ K K K K+ + KK RK+K K +
Sbjct: 154 EHSRPPPSESLKVKNGGKVY---PKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQL 210
Query: 121 KK 122
K+
Sbjct: 211 KE 212
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 26.3 bits (59), Expect = 5.3
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K+ ++ KK +K +K KKKKK++K +K ++I
Sbjct: 185 KQTEELIKKLLEKPEKPKKKKKRRKGFSKDVRI 217
Score = 25.5 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKK 121
K+ ++ KK K +K KKKKK++K
Sbjct: 185 KQTEELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 26.4 bits (58), Expect = 5.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
P A KK+ K +K K K+K K ++ K + KK++ ++K+
Sbjct: 723 PAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSS 773
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 26.5 bits (58), Expect = 5.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K+ +KKK KK K +K+ KRK KK K ++ + ++
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNEENFETDRAPSLLSY 115
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 26.6 bits (59), Expect = 5.5
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK-------KKNKNKI 131
I D + K+K+ K++K K K+++K + + + +K K+
Sbjct: 206 ILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKL 265
Query: 132 IKIN 135
KI
Sbjct: 266 EKIK 269
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 26.2 bits (58), Expect = 5.5
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
A + +K+ +++ +KRK + K++K K + ++
Sbjct: 91 AVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
Score = 25.5 bits (56), Expect = 9.3
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +++ +++ +K+K R K++K K + +
Sbjct: 92 VAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVD 135
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 26.6 bits (59), Expect = 5.6
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 33 RLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKK- 91
LS R+ IS S+L SD+ + FD L++ E S + + + E K++ K
Sbjct: 205 NLSSRTV--LISGLPSELRSDEELKE--LFDKLKVGEIDSDVLCRDLGTLQELYKERDKI 260
Query: 92 ----EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
EK + + KK K KK K +KK+ +
Sbjct: 261 LKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEIL 301
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 26.1 bits (58), Expect = 5.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+ KK K+K K+ ++KK + +K +KK
Sbjct: 92 VQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 25.4 bits (56), Expect = 8.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
++++ K K+K K+ ++KK + +K +KK
Sbjct: 87 SSEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 26.5 bits (59), Expect = 5.6
Identities = 12/58 (20%), Positives = 34/58 (58%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
F + + + K +K +EK ++++++ + + +++++ +++KK+K K K IK
Sbjct: 2 FDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIK 59
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 26.2 bits (58), Expect = 5.6
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K K+K K +R K+K+RK+ +++ K++K+ KKK
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 26.2 bits (58), Expect = 5.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+KRK KK KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 26.2 bits (58), Expect = 5.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ IE+ KK K+K +KK+ KK K+ K K K K K K
Sbjct: 17 LEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPADKKKPF 67
>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family. The human FRG1 gene maps to
human chromosome 4q35 and has been identified as a
candidate for facioscapulohumeral muscular dystrophy.
Currently, the function of FRG1 is unknown.
Length = 189
Score = 26.2 bits (58), Expect = 5.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
F I +A+ K + K+ K KK +K + +K + + K+ KK +
Sbjct: 121 FKTTDRIRMEARFKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARA 169
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 26.6 bits (59), Expect = 5.8
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+K E + K + K + K+ K+ K K + +
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPL 133
Score = 26.2 bits (58), Expect = 5.9
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
RK+ + + K + KR K+ K K + +K + +I
Sbjct: 89 RKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIA 148
Query: 133 KI 134
++
Sbjct: 149 EL 150
Score = 26.2 bits (58), Expect = 7.8
Identities = 7/56 (12%), Positives = 19/56 (33%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ I ++ + K++ K + ++ K+ K K + + N
Sbjct: 83 SLTADPRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKTN 138
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 26.3 bits (59), Expect = 5.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 116 KKKKKKKKKKKNK 128
+K KK KK KKNK
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 9.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 107 RKKKKKKKKKKKK 119
RK KK KK KK K
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 25.6 bits (57), Expect = 9.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 92 EKKKKKKKKRKKKK 105
++K KK KK KK K
Sbjct: 342 QRKSKKYKKNKKNK 355
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 26.3 bits (59), Expect = 6.1
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
EK +K K K+ KK RK ++K+ + + + KK K ++K K + K +++
Sbjct: 218 EKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKSLRLT 269
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 26.3 bits (58), Expect = 6.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKK 111
+ K++ K +K KR KK+K++++K
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEK 45
Score = 25.6 bits (56), Expect = 9.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ K K +K K+ KK+KK+++K
Sbjct: 20 GPRPVKDEAKPRKIKRVKKRKKREEKDE 47
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 26.2 bits (58), Expect = 6.2
Identities = 9/51 (17%), Positives = 30/51 (58%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
F ++ +++ K +E KK++++ +++KK K+ + ++ ++K++
Sbjct: 320 FKDFNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNP 370
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 26.1 bits (57), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
EKAK + + K K +KK +++ +KKK K K K
Sbjct: 205 EKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAA 249
Score = 26.1 bits (57), Expect = 8.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
A KKK E + K ++ K + K K +KK + ++K K K
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKK 235
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 26.5 bits (59), Expect = 6.6
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
I E+ +K +E + +KK + + K +K K +K +K K + +IKIN
Sbjct: 183 INEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKPLIKIN 236
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 26.3 bits (58), Expect = 6.7
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+K K KK K+ R + KK K + ++K K
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAK 85
Score = 25.9 bits (57), Expect = 7.2
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 81 DIIEKAKKKKKEKKKKKKKK----RKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
D +E+++K K KK K+ + R KK K + ++K K +K+
Sbjct: 39 DELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA 90
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 26.0 bits (58), Expect = 6.8
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 108 KKKKKKKKKKKKKKKKKKKNKNKIIK 133
KKK +KKK KKKK+K+KK +N+I++
Sbjct: 270 KKKIRKKKIKKKKEKEKKPEENEILE 295
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 26.3 bits (58), Expect = 6.8
Identities = 15/52 (28%), Positives = 34/52 (65%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I+ +IEK +KE ++K + K K+++K KK+ +++ ++ K++++NK
Sbjct: 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKL 564
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 26.0 bits (57), Expect = 6.8
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 64 FLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ +L + S I E ++K ++ +K ++ ++ KKKKK +K K++
Sbjct: 38 YAKLYGTDSPTAEAEAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREP 97
Query: 124 KKKNK 128
+ K K
Sbjct: 98 RTKRK 102
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 25.8 bits (57), Expect = 7.0
Identities = 8/38 (21%), Positives = 26/38 (68%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+K+K++++R+ +++R+ + ++ + K+K K++ K
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKA 156
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 25.9 bits (57), Expect = 7.0
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K + +K+ + ++ KKK+ + KKKK+ ++ K +KK ++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQ 116
Score = 25.9 bits (57), Expect = 7.6
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + +++ + ++ KK+++ + KKKK+ ++ K +K ++ IK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEK 121
Score = 25.5 bits (56), Expect = 9.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
EK + ++ KKK + + K+KK+ ++ K +KK + K K
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 26.0 bits (57), Expect = 7.6
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
H I K +++++ +++ + K +K + K + K+K K
Sbjct: 433 HQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKM 471
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 25.8 bits (57), Expect = 7.7
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKK--KKKRKKKKKKKKKKKKKKKKKKKNKN 129
P+ D+ + ++K++KK+ K++ + + R+ K K+KK+ + KN
Sbjct: 45 PLDDLELVDESERKKRKKRFKERMETSYRLFRQDYKLMKEKKEYRATGGYKNNQ 98
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 26.0 bits (58), Expect = 8.0
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 65 LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
LRLTE G R++ G + D + KK++ +++ +R K + K+ +
Sbjct: 443 LRLTEIG-REL-GLVDDE-RYERFLKKKENIEEEIERLKSTWVTPSEVAKELLALGGQPL 499
Query: 125 KKNKN 129
K+ +
Sbjct: 500 KRRSS 504
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 25.5 bits (56), Expect = 8.0
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
KK KKKK RKKK +K KKKKK+K++ + ++ +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSD 87
Score = 25.5 bits (56), Expect = 8.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ KK KKKK +KK+ KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 25.5 bits (57), Expect = 8.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 114 KKKKKKKKKKKKKN 127
KKKK KKK KKN
Sbjct: 1 AKKKKTVKKKVKKN 14
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 25.9 bits (57), Expect = 8.0
Identities = 8/46 (17%), Positives = 26/46 (56%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ ++K ++K+KKK++ K K++K++ + + + ++
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKEL 382
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 25.8 bits (57), Expect = 8.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 74 KVFGPIHDI-IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K +GP I IE A++++ K+ K + KK K K+ K+ K++ +N
Sbjct: 510 KKYGPPDKIVIEMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSK 569
Query: 133 KIN 135
I
Sbjct: 570 NIL 572
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 25.7 bits (57), Expect = 8.3
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
R K + K +K+K K+ ++ +++IK
Sbjct: 294 TDRIVFDGTKWEDKSAFQKRKDLKEDPEDADRLIK 328
>gnl|CDD|220519 pfam10009, DUF2252, Uncharacterized protein conserved in bacteria
(DUF2252). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 383
Score = 26.0 bits (58), Expect = 8.4
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
G + ++KA+K+ +E+ K + ++R + +
Sbjct: 139 GVVRKALKKARKRTRERLLDKLTELVGGRRRFRDDPPR 176
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 25.5 bits (56), Expect = 9.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
P+ + IE+ KK + K K+ KK ++ KKK + +KK +K K
Sbjct: 100 NPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK 149
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 25.9 bits (57), Expect = 9.1
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 43 ISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRK 102
++ + + +DD I + L + +G + + + ++I K+K ++ K + K
Sbjct: 65 FTNSLDENNNDDYI-----INSLLKSPNGKKFIVSKLQELISSYDKEKNNQETKNSGELK 119
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K K + +K KN K+ IN
Sbjct: 120 TFADFDGKNNKSVENFRKNFGNLKNVKKVYLIN 152
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 25.8 bits (58), Expect = 9.3
Identities = 12/69 (17%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKK-------KKKKKKKKKKKKKKKKK 126
++F P+ +I+ + + +K+ K +++ ++ KK K ++ +K+++K +
Sbjct: 798 ELFLPLEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAE 857
Query: 127 NKNKIIKIN 135
+ K+ K+
Sbjct: 858 YEEKLAKLK 866
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 25.7 bits (57), Expect = 9.6
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 56 ISAGD---------FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRK 102
+ AGD F L + G + G I I E K K E + + K K
Sbjct: 172 VYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPK 227
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 25.4 bits (56), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
+ K +KE+KK K+ KK K +K+K +++
Sbjct: 90 MFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.131 0.350
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,075,453
Number of extensions: 719609
Number of successful extensions: 29107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14309
Number of HSP's successfully gapped: 4311
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)