RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9943
(135 letters)
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit;
alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP:
c.23.10.3 PDB: 1vyh_A
Length = 229
Score = 43.2 bits (101), Expect = 4e-06
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGD 60
+ LLPRG NPL +K VN+LLK L + ++ + D + SD IS D
Sbjct: 135 IVLGLLPRGEKPNPLRQKNAKVNQLLK----VSLPKLANVQLLDTDGGFVHSDGAISCHD 190
Query: 61 FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKK 95
FDFL LT G K+ P+H++I + ++ E+K+
Sbjct: 191 MFDFLHLTGGGYAKICKPLHELIMQLLEETPEEKQ 225
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma
subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus}
SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A
3dt9_A* 3dt6_A* 3dt8_A*
Length = 232
Score = 41.2 bits (96), Expect = 2e-05
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 1 MSQELLPRGRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGD 60
+ LLPRG++ NPL EK VN+L++ L+ R F+ D + SD IS D
Sbjct: 134 VVLGLLPRGQHPNPLREKNRRVNELVR----AALAGHPRAHFLDADPGFVHSDGTISHHD 189
Query: 61 FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKK 94
+D+L L+ G V +H ++ + + + +
Sbjct: 190 MYDYLHLSRLGYTPVCRALHSLLLRLLTQDQGQG 223
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 38.3 bits (88), Expect = 3e-04
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
A+ K + KK KK+K +++K+K+ ++K+K+++ KK K+ K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKEN 863
Score = 37.1 bits (85), Expect = 8e-04
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+AKK KKEK +++K+K+ ++++K+++ KK K+ K+ + K
Sbjct: 823 ARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKY 872
Score = 34.0 bits (77), Expect = 0.010
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K KK KK+K ++++KK+ ++K+K+++ KK K +
Sbjct: 818 TARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKE 862
Score = 32.5 bits (73), Expect = 0.038
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 78 PIHDIIEKAKKKKKEKK------KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
P K+ +K + K + KK KK K +++KKK+ ++K+K++ NK
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Score = 31.3 bits (70), Expect = 0.078
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 83 IEKAKKKKKEK---------KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E+A K+ EK + K + +K KK++ +++KKK+ ++K+K+++ K IK
Sbjct: 799 YEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIK 858
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 37.9 bits (87), Expect = 4e-04
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ + + ++KK+ ++ K +K K ++KKKK+ K K K + +K+
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKL 110
Score = 37.5 bits (86), Expect = 5e-04
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
V + + + + ++KK+ K+ + KK K ++KKKK+ K K K
Sbjct: 47 TAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 37.1 bits (85), Expect = 8e-04
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + + ++KK+ K+ K KK K ++KKKK+ K K +
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Score = 36.7 bits (84), Expect = 0.001
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ ++K++ K+ K KK K ++KKKK+ K K K+++ K
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 36.3 bits (83), Expect = 0.001
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + + + ++K++ K+ K KK K ++KKKK+ K K
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 36.3 bits (83), Expect = 0.001
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + + ++KK+ K+ K K+ K ++KKKK+ K K K+
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + ++KK+ K+ K KK K ++KKKK+ K K + ++
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRM 106
Score = 34.4 bits (78), Expect = 0.006
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KK+ K+ K K+ K +++KKK+ K K K+++ K +
Sbjct: 68 PPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEAD 113
Score = 33.2 bits (75), Expect = 0.013
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + + + + ++KK+ K+ K KK K ++KKKK+
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 32.5 bits (73), Expect = 0.025
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ KK+ ++ K KK + ++KK+K+ K K K+++ K +
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEAD 113
Score = 32.1 bits (72), Expect = 0.037
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ + + + ++KK+ K+ K KK K ++KKKK K
Sbjct: 53 VIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 31.3 bits (70), Expect = 0.074
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ K+ K+ K KK K ++KKK++ K K K+++ K + ++
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 29.4 bits (65), Expect = 0.34
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
++A K+ + KK K +++KKK+ K K K+++ K + +
Sbjct: 73 KQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 35.3 bits (81), Expect = 0.003
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ ++ + ++ E K++ + KKKKKKKKK+ K +
Sbjct: 62 ASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 33.7 bits (77), Expect = 0.010
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 68 TESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
E K G D + + ++ + K++ + + KKKKKKKKK+ K
Sbjct: 52 GEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 33.0 bits (75), Expect = 0.019
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 71 GSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
G ++ +++ ++ + + K++ + + KKKKKKKKK+
Sbjct: 52 GEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 32.6 bits (74), Expect = 0.029
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
++ E+ + K+R + + KKKKKKKKK K+
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.5 bits (66), Expect = 0.32
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ + + ++ + K++ + + KKKKKK K + K+
Sbjct: 61 GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 28.0 bits (62), Expect = 0.92
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 69 ESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
SGS D E+ E+ KKK+++KKK K +++ K+ +
Sbjct: 9 ASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVA 68
Query: 129 NK 130
+
Sbjct: 69 RQ 70
Score = 26.8 bits (59), Expect = 2.4
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+E+ + KKKR+KKKK K +++ K +
Sbjct: 16 GDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Score = 26.8 bits (59), Expect = 2.5
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E AKKK+++KKK K +++ K+ + ++ ++ ++K
Sbjct: 33 EAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDK 79
Score = 26.8 bits (59), Expect = 2.6
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E A R++ ++ KKK++KKKK K +
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAG 52
Score = 26.4 bits (58), Expect = 3.1
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 71 GSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
G A++ K+K++KKKK + +++ K+ + ++ ++
Sbjct: 16 GDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERS 74
Score = 26.0 bits (57), Expect = 4.7
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+E+ +++ ++ KKK++KKKK K
Sbjct: 3 GVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSA 50
Score = 25.7 bits (56), Expect = 6.1
Identities = 10/66 (15%), Positives = 24/66 (36%)
Query: 65 LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ + + G + + ++ KKK+RKKKK + +++ K+
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 125 KKNKNK 130
+
Sbjct: 64 VDEVAR 69
Score = 25.7 bits (56), Expect = 6.2
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ KKK++KKK+ K +++ K+ + + +
Sbjct: 27 AASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLER 73
Score = 25.7 bits (56), Expect = 6.3
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ +KK++KKKK K +++ K+ + ++ +
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERS 74
Score = 25.7 bits (56), Expect = 6.6
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KKK +KKKK K +++ K+ + ++ +++ +
Sbjct: 31 AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 34.9 bits (81), Expect = 0.004
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
++ +I++AK+ + + KKK +K+ KK + + I
Sbjct: 599 LYQLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSGAI 652
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 61 FFDFLRLTESGSRKVF-------GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
+F F + E GS+ G +HD++ + KK + K
Sbjct: 77 WFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVGTASE---NVYVNTAHLK 133
Query: 114 KKKKKKKKKKKKKNKNKIIKIN 135
++K + K + N + IN
Sbjct: 134 NSQEKYSNRLYKYDHNFVKAIN 155
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.009
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK----------KKKKKKKKKNKNK 130
E +K ++E++K+ ++ K +++ ++K KK ++ +K K N+
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Score = 31.7 bits (71), Expect = 0.042
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+K ++E ++K KK ++ +R+ ++ +K K + K
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 31.3 bits (70), Expect = 0.066
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K +++ + K KK ++ +++ ++ +K K + +K
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 30.5 bits (68), Expect = 0.12
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ A K +++ ++K KK ++ +++ ++ +K K + K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 30.1 bits (67), Expect = 0.17
Identities = 7/43 (16%), Positives = 24/43 (55%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ ++ + +K R++++KR ++ K +++ ++K K+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 120
Score = 29.4 bits (65), Expect = 0.24
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK-----------KKKKKKNKNKI 131
++ + +K +++++K+ ++ K +++ ++K KK + +K K N+I
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Score = 27.0 bits (59), Expect = 1.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
+ EKAKK +E +++ ++ +K K + K
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 33.7 bits (77), Expect = 0.012
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K+ ++K + KK+ K + + + + K + K +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLT 678
Score = 30.6 bits (69), Expect = 0.15
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K K+ ++K + +K+ K + + + + + K
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHA 671
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 33.0 bits (76), Expect = 0.016
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
PI+ K + ++ ++++ K +K+ + ++++++KK K KK K
Sbjct: 210 PIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 33.2 bits (76), Expect = 0.018
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
F +H+ + KE +K+++ + K ++ + K+K +K++ +K+
Sbjct: 294 FFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.1 bits (68), Expect = 0.18
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ K+ +K++ ++K R+ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.6 bits (64), Expect = 0.66
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ K+ +K+++ +K ++ K K+K +K++ + +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.6 bits (59), Expect = 2.5
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K +K++ ++K ++ K K+K +K++ + +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 31.8 bits (72), Expect = 0.053
Identities = 11/55 (20%), Positives = 33/55 (60%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
F +H+ + KE +K+++ + K ++ + K+K +K++ +K++K+++ +
Sbjct: 365 FFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLID 419
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.8 bits (72), Expect = 0.055
Identities = 11/55 (20%), Positives = 34/55 (61%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
FG ++ + K+E + +KKK +++++ + + + K+++++++K +K +N
Sbjct: 377 FFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 31.4 bits (71), Expect = 0.061
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 52 SDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
S++RI +G RL++S G + D + K+K+ + K KKK K
Sbjct: 316 SEERIRSG----VKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGA 371
Query: 112 KKKKKKKK 119
K K+ K
Sbjct: 372 AGKFKRGK 379
Score = 31.0 bits (70), Expect = 0.085
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K KRK+ + + KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 31.0 bits (69), Expect = 0.10
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ P ++ + + + K+ K K K KK K +K K K I
Sbjct: 261 SLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 30.2 bits (67), Expect = 0.19
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+K K + + K+ + K K KK K +K K +K+ + I
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 30.2 bits (67), Expect = 0.21
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK-----KKKKKKKKK 126
K K + KK K +K K K K K KK K
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 29.8 bits (66), Expect = 0.21
Identities = 14/53 (26%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK-----KKKKKKKKK 125
D + K K KK K +K K K K K KK K
Sbjct: 279 AKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 29.8 bits (66), Expect = 0.24
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K + E K+ K K K KK K +K K K+ K I
Sbjct: 270 LKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSID 319
Score = 28.6 bits (63), Expect = 0.57
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 41 EFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKK 100
++I ++SD +S + P+ + K K+ K KK
Sbjct: 239 DYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNS 298
Query: 101 RKKKKKRKKKKKKKK---------KKKKKKKKK 124
+ ++ K K K KK K
Sbjct: 299 KMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 25.6 bits (55), Expect = 6.4
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ KK K + + K+ K K K KK K K +
Sbjct: 259 PASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 30.7 bits (69), Expect = 0.13
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
++ ++ + + R K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 30.3 bits (68), Expect = 0.19
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ ++ + R + K K+ +K N II I
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 29.9 bits (67), Expect = 0.22
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+ ++ +E + + R K K+ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.5 bits (66), Expect = 0.26
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
A ++ ++ + + + K K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 0.39
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
++ ++ + + + + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 0.55
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 0.57
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++ ++ + R + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 0.62
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
++ + + + + K K+ +K N II
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 28.4 bits (63), Expect = 0.72
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
+ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 0.72
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
+ ++ + + + K KR +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 0.85
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.2 bits (60), Expect = 2.0
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
+ ++ + + + K ++ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 30.2 bits (69), Expect = 0.15
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K++ + R + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.3 bits (64), Expect = 0.64
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
E+ K K+E + + + +++ + K+ +
Sbjct: 156 FERLPKPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 1.1
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
+ + K K++ + + + R +K+ R K+ +
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 1.5
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
KR+ + + + + +K+ + K+ ++
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 1.6
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 1.9
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 2.3
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 2.6
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 3.0
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K++ + + + + +K+ + K ++
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.0 bits (58), Expect = 3.3
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
++ + R + + +K+ + K+ +
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELSQ 191
Score = 25.2 bits (56), Expect = 6.6
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KR+ + + + + +K+ + K +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELS 190
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 0.15
Identities = 7/47 (14%), Positives = 24/47 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K ++ K +++ ++K K+ ++ +++ ++ +K K N+
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Score = 29.9 bits (66), Expect = 0.20
Identities = 8/49 (16%), Positives = 28/49 (57%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I + ++++K ++ + +++ ++K KK ++ +++ ++ KNK
Sbjct: 102 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 150
Score = 29.9 bits (66), Expect = 0.22
Identities = 7/48 (14%), Positives = 22/48 (45%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K +++ + K KK ++ +++ ++ +K K + +K
Sbjct: 111 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Score = 29.1 bits (64), Expect = 0.35
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
E+ K+ ++ K +++ ++K KK ++ +++ ++ +K K N+I
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 155
Score = 28.0 bits (61), Expect = 0.88
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ A K +++ ++K KK ++ +++ ++ +K K + K
Sbjct: 117 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Score = 25.7 bits (55), Expect = 5.2
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
+ EKAKK +E +++ ++ +K K + K
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 0.16
Identities = 8/53 (15%), Positives = 26/53 (49%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ +E+ + ++E K + +++ K +K+ + + +KK ++ +K
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017
Score = 28.2 bits (63), Expect = 0.90
Identities = 5/45 (11%), Positives = 17/45 (37%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K E K + +++ ++ ++ K +K + + +
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
>2izw_A Coat protein, ryegrass mottle virus coat protein; RNA, assembly,
capsid protein; 2.90A {Ryegrass mottle virus}
Length = 234
Score = 30.3 bits (67), Expect = 0.16
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
A+KK K + K K +KKR+K + ++
Sbjct: 1 ARKKGKSASQVIVLKEKSRKKRQKSRGQQ 29
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.0 bits (67), Expect = 0.20
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+++ H I + +K+ KK+ KKKR + K +KK + +KK +
Sbjct: 238 EMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRA 290
Score = 30.0 bits (67), Expect = 0.20
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
I E +KK KK+ KKK+ + K +KK + +KK + + +
Sbjct: 247 IRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 28.5 bits (63), Expect = 0.63
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K I + KK KKE KKK+ + K +KK + +KK + +++
Sbjct: 242 KAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 28.1 bits (62), Expect = 0.88
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ ++ +KA +E +KK +K+ KK++ + K +KK + +K
Sbjct: 236 MEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283
Score = 27.3 bits (60), Expect = 1.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
D++E+ KK ++ KK KK KKK+ + K +KK + K
Sbjct: 234 DMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFL 288
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 30.2 bits (67), Expect = 0.20
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
P I+++ KK E K K++ K ++ K KK + K N+ I K
Sbjct: 335 PAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 29.4 bits (65), Expect = 0.33
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
E +K K++ K +K K KK + K ++ K + I
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Score = 28.2 bits (62), Expect = 0.92
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
A+ K +++ K RK K KK + K ++ K +
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+A K K++ K +K K K+ + K ++ K + +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDAD 397
Score = 27.1 bits (59), Expect = 2.1
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
KAK++ K +K K KK + K ++ K ++ I
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Score = 26.3 bits (57), Expect = 4.0
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K +K K KK + K ++ K +++ + + IK
Sbjct: 357 ATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIK 406
Score = 25.6 bits (55), Expect = 7.0
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K + + K++ K +K + KK + K ++ K +
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQE 394
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.6 bits (66), Expect = 0.26
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
I K KK+ KR KK +++K ++
Sbjct: 247 IRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291
Score = 27.3 bits (60), Expect = 1.6
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + +K + K +K+ K+ KK +++K + N +
Sbjct: 236 MESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNS 290
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 29.6 bits (67), Expect = 0.30
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 77 GPIHDIIEKAKKKKKEKKKKK 97
G I + KA + E K KK
Sbjct: 478 GNIDEATAKAMNLEMESKLKK 498
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 29.1 bits (64), Expect = 0.42
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
EK KK ++KK KK KK +K KK KK KK K
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 28.7 bits (63), Expect = 0.59
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ K +EK KK R+KK K+ KK KK KK K K
Sbjct: 356 AALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 27.9 bits (61), Expect = 0.99
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KK +KK KK KK K+ KK KK KK + K
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 27.9 bits (61), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+KA + K ++K KK +++K KK KK KK KK
Sbjct: 352 DKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 27.5 bits (60), Expect = 1.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ KK +++K KK +K KK KK KK KK + K
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 27.5 bits (60), Expect = 1.4
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K KK KK KK KK KK KK +KK ++ K
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 27.1 bits (59), Expect = 1.9
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K + K ++K KK R+KK KK KK KK K K
Sbjct: 351 MDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 27.1 bits (59), Expect = 2.1
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + K + K + K +K ++KK KK KK KK K
Sbjct: 347 HKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK 393
Score = 27.1 bits (59), Expect = 2.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
A + K ++K K+ ++KK KK KK KK KK K
Sbjct: 355 AAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
Score = 26.8 bits (58), Expect = 2.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ A + + ++K +K ++K+ KK KK KK KK K
Sbjct: 353 KAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 26.8 bits (58), Expect = 2.7
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K + K +++ K+ ++KK KK KK KK K
Sbjct: 348 KLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 26.8 bits (58), Expect = 2.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K ++KK +K KK +K +K KK KK +KK +
Sbjct: 370 KKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 26.8 bits (58), Expect = 2.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KK KK KK KK KK KK KK +KK + K
Sbjct: 372 PRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 26.8 bits (58), Expect = 3.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K + K ++K KK ++KK KK KK KK K
Sbjct: 349 LRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Score = 26.4 bits (57), Expect = 3.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ +KK K+ KK K+ K+ KK KK +KK + K
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 26.4 bits (57), Expect = 3.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
E+ K+ ++KK KK KK KK KK KK K +
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 26.0 bits (56), Expect = 4.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ K + K +K KK ++KK KK KK KK
Sbjct: 346 NHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKK 388
Score = 26.0 bits (56), Expect = 4.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ K +K ++KK K+ K+ KK KK KK K
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 26.0 bits (56), Expect = 4.9
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
E K ++K KK +RKK KK KK KK K K
Sbjct: 351 MDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 28.7 bits (65), Expect = 0.49
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+K + R+ R +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 28.0 bits (63), Expect = 0.97
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+K R ++ + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 28.0 bits (63), Expect = 1.0
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+K R ++ + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 26.8 bits (60), Expect = 2.6
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
+K ++ R +K++ K
Sbjct: 232 AGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 26.0 bits (58), Expect = 3.9
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+K + +R + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 25.6 bits (57), Expect = 6.2
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+K + ++ + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 25.3 bits (56), Expect = 6.5
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
A +K + ++ + +K+K K
Sbjct: 230 ASAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 25.3 bits (56), Expect = 8.2
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
A +K + ++ + +K K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 0.50
Identities = 4/46 (8%), Positives = 22/46 (47%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
II++ ++ ++ +K + + +++ K +++++ +
Sbjct: 724 IIDRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 28.3 bits (64), Expect = 0.55
Identities = 5/43 (11%), Positives = 21/43 (48%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
++ + + +++ + +KK + K ++ + ++K+K
Sbjct: 143 FFDRMTDQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 3.2
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
D + ++ + +K+ ++K ++ + ++K+K
Sbjct: 145 DRMTDQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 25.6 bits (57), Expect = 5.9
Identities = 3/36 (8%), Positives = 18/36 (50%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +++ + +K+ ++K ++ + ++K+
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKR 184
Score = 25.2 bits (56), Expect = 7.1
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++ +KK ++K ++ + + K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQK 183
Score = 25.2 bits (56), Expect = 7.3
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+++ +KK ++K ++ + ++K+K
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 24.8 bits (55), Expect = 9.3
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
R++ + +KK ++K ++ + + K K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.9 bits (65), Expect = 0.55
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
K +++ +K+KK+ + KKK + + + +N
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 28.1 bits (63), Expect = 0.88
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K +++ KK+KK+ + KKK + +N+ + +++
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVT 512
Score = 27.4 bits (61), Expect = 1.6
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ ++I K E++ KK+K K+ + KKK + + + + + + +
Sbjct: 462 PGLQELIPFVKPAPIEQEPSKKQK-KQHEGSKKKAAARDVTLENRLQNMEVTDAL 515
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 28.7 bits (64), Expect = 0.55
Identities = 7/36 (19%), Positives = 22/36 (61%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
F + D + K++KK+ ++KK+ + ++++ ++
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 28.7 bits (65), Expect = 0.56
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+K R+ + R + K K
Sbjct: 233 QKVGLIAARRTGRLRGQAAATAAKADK 259
Score = 26.8 bits (60), Expect = 2.0
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+K R+ + + + K K
Sbjct: 233 QKVGLIAARRTGRLRGQAAATAAKADK 259
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.4 bits (64), Expect = 0.59
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
D++ + + +K E K+K K+K+K K+ +++
Sbjct: 169 FDLMREIRARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 26.0 bits (58), Expect = 4.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+ +K + K+K KKK+K K+ +++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 25.3 bits (56), Expect = 6.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKK 126
R +K + K+K KKK+K K+ ++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRE 201
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 28.7 bits (65), Expect = 0.61
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + K+KK + K+ + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
I + + K+KK K+ + + ++KK KK
Sbjct: 194 ITVNFDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 26.8 bits (60), Expect = 2.6
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ K+KK + K + + ++KK KK
Sbjct: 200 GLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 25.6 bits (57), Expect = 6.7
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ K+KK + K+ + + ++KK K
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 0.61
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
K+ K KK K K K KK K KN
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGS 478
Score = 28.7 bits (65), Expect = 0.62
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 71 GSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
F P I++ K KK K K K KK K K
Sbjct: 436 PGEPEFIPY---IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.4 bits (64), Expect = 0.71
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K+ K KK K K K KK K K +++
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
Score = 27.6 bits (62), Expect = 1.4
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
RK + I K+ K KK K K K KK K K
Sbjct: 432 RKYIPGEPEFIPYIKELPKNTTSVKKAK-GKNPKNTTSVKKAKGK 475
Score = 26.8 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K+ K KK + K K KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 25.7 bits (57), Expect = 6.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I K K K++ K +K K ++K+ +K+ + K + K
Sbjct: 63 IGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Score = 25.3 bits (56), Expect = 8.7
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K +K+ K+ K K+ K +K+K +KK+ +K
Sbjct: 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 27.7 bits (62), Expect = 0.62
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
I+++ + E K+ +K++ KK K +
Sbjct: 78 ILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 0.98
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
I+ K+ + + KR +K++ KK K +
Sbjct: 69 AKAILWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 1.9
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K+ + + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 3.1
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K+ + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 3.2
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K+ + KR +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 25.0 bits (55), Expect = 5.9
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K+ + + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 28.5 bits (63), Expect = 0.63
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ DI A + + K ++K K++ + KK ++ K K+++ +
Sbjct: 236 LEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
Score = 28.1 bits (62), Expect = 0.95
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ H+ I K +KK K++ + K+ ++ K K+++ + K
Sbjct: 238 DIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAA 292
Score = 26.2 bits (57), Expect = 4.1
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ +KK +++ + K+ ++ K K+++ + K +
Sbjct: 254 KPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQ 296
Score = 25.1 bits (54), Expect = 9.1
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KK KE+ + KK ++ K K+++ + K ++
Sbjct: 256 TEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA,
oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Length = 439
Score = 28.6 bits (63), Expect = 0.65
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I DI KAK + +K +K+ +K K + KK++
Sbjct: 392 AIPDISTKAKAQAVLGMDMEKMNAEKEAFKKDMLPKWDAEAKKREAT 438
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 28.3 bits (64), Expect = 0.71
Identities = 3/43 (6%), Positives = 15/43 (34%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ ++ E ++K+ + K+ + ++ +
Sbjct: 455 VSAGPQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDA 497
Score = 26.8 bits (60), Expect = 2.4
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
++K+ + KR + ++ + +
Sbjct: 467 VQRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 26.4 bits (59), Expect = 3.1
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++KR + K+ + ++
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQP 494
Score = 25.6 bits (57), Expect = 5.8
Identities = 3/38 (7%), Positives = 14/38 (36%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
IE ++K+ + ++ + ++ + +
Sbjct: 462 NIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 25.6 bits (57), Expect = 6.5
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++K+ + K+ + ++
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQP 494
Score = 25.2 bits (56), Expect = 7.6
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
++KR + K+ + ++ +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPD 496
>1f2n_A Capsid protein; plant virus, coat protein, beta-annulus, domain
swapping, X-RAY diffraction, icosahedral virus; 2.80A
{Rice yellow mottle virus} SCOP: b.121.4.7
Length = 238
Score = 28.4 bits (62), Expect = 0.72
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKK 109
A+K KK + ++ ++K ++ +
Sbjct: 1 ARKGKKTNSNQGQQGKRKSRRPRG 24
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 28.7 bits (63), Expect = 0.73
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ P ++ K++ + K KKK + ++ + + K
Sbjct: 513 WNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
Score = 27.9 bits (61), Expect = 1.2
Identities = 13/69 (18%), Positives = 22/69 (31%)
Query: 61 FFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
F L R+ PI I E K + K K + KKK +
Sbjct: 490 LFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVT 549
Query: 121 KKKKKKNKN 129
++ ++ +
Sbjct: 550 AQEIFQDNH 558
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.5 bits (63), Expect = 0.78
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKK--KKKRKKKKKKKKKKKKKKKKKKKNKNK 130
I +KK KE ++ ++ KK ++ K++ K KK + N+
Sbjct: 387 ARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNE 440
Score = 27.0 bits (59), Expect = 2.6
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKR--KKKKKKKKKKKKKKKKKKKNKNKIIK 133
P + ++K K+ ++ ++ KK ++ K++ K KK +
Sbjct: 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTN 439
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 27.9 bits (62), Expect = 0.84
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
KK +K+ +N + I
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGVCHI 33
Score = 26.7 bits (59), Expect = 2.2
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKK 109
A KK +K+ +
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANE 25
Score = 25.2 bits (55), Expect = 6.2
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKN 127
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 25.2 bits (55), Expect = 7.4
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKK 118
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 24.8 bits (54), Expect = 8.4
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKK 110
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 24.8 bits (54), Expect = 9.2
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKK 119
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 24.8 bits (54), Expect = 9.5
Identities = 3/23 (13%), Positives = 5/23 (21%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKK 120
KK +K +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 24.8 bits (54), Expect = 9.6
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKK 117
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 28.1 bits (63), Expect = 0.89
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 28 DSLS----DRLSDRSRLEFISHDISDLVSDDRISAG 59
D+L + D + F I+D +
Sbjct: 64 DNLLSAEKINVPDHPAVRFSETSITDDALLASLQDE 99
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 27.9 bits (61), Expect = 0.91
Identities = 7/49 (14%), Positives = 27/49 (55%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+I++ K+++ + + +KRK ++ K+ ++++ + + + K+
Sbjct: 123 VIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Score = 27.5 bits (60), Expect = 1.3
Identities = 7/46 (15%), Positives = 23/46 (50%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
E + +K K ++ K+ ++++ + + + K+ K++ + N
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 179
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.1 bits (62), Expect = 0.99
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ + K + ++ ++ K +K K ++ KK K ++K + K K
Sbjct: 243 VEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKF 295
Score = 27.7 bits (61), Expect = 1.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I + ++ K KK K K+ KK K ++K + K K +
Sbjct: 254 IRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQ 296
Score = 27.4 bits (60), Expect = 1.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K+F +H I K ++ K KK K KR KK K ++K + K K + ++
Sbjct: 245 KLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 1.0
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ +K K E K++K + + + + + K+ K+KKN
Sbjct: 379 KKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
Score = 25.5 bits (55), Expect = 7.2
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ KKK + + K+RK + + + + + K+ K+ KN
Sbjct: 383 EDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 27.3 bits (61), Expect = 1.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
AK K ++ + +K +K K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.9 bits (60), Expect = 1.5
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K + ++ + +K +K +I +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKGVIHVQ 35
Score = 26.5 bits (59), Expect = 2.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKK 119
K K R+ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 2.8
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKK 121
K K ++ R +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 2.9
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K K R+ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 3.6
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKK 111
K K ++ + RK RK K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 3.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K K +R + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 3.6
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKK 120
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 4.0
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 4.1
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 4.1
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKK 117
K K ++ + RK +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.4 bits (56), Expect = 4.9
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K + ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.4 bits (56), Expect = 5.4
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.4 bits (56), Expect = 5.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKK 116
K K ++ + ++ +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 24.6 bits (54), Expect = 8.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKK 114
K + ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 24.6 bits (54), Expect = 9.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKK 115
K K ++ R +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNK 128
K+K+ +K+ K+ +KK+K K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 106 KRKKKKKKKKKKKKKKKKKKKNKNK 130
KRKK +K+ K+ +KK+K K ++ +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 26.3 bits (59), Expect = 2.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
++K K++K +K+ K+ +KK+K K +
Sbjct: 148 VDKLSILKRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.9 bits (58), Expect = 4.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K+KK K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.6 bits (57), Expect = 4.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKK 119
K+KK +K+ K+ +K++K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.6 bits (57), Expect = 5.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K+K+ +K+ ++ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.2 bits (56), Expect = 8.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKK 126
K+KK K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 24.8 bits (55), Expect = 8.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K+KK +K+ K+ +KK+K K + + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 24.8 bits (55), Expect = 9.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K++K +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 24.8 bits (55), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKK 126
KRKK +K K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 28.0 bits (63), Expect = 1.1
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 64 FLR-LTESGSRKVFGPIH---------DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
FL +T + + +G ++ +I++KA K KE + KRK+ K K
Sbjct: 839 FLYQITRGIAARSYG-LNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKLWTM 897
Query: 114 KKKKKKKKKKKKKNKNKI 131
+ +K ++ N +
Sbjct: 898 HNAQDLQKWTEEFNMEET 915
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.7 bits (61), Expect = 1.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
F PI+ ++KK + K++KK K+K+ + +
Sbjct: 104 FEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.6 bits (61), Expect = 1.2
Identities = 5/52 (9%), Positives = 19/52 (36%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ +++ + + ++KK +R +++ K K + +
Sbjct: 266 AKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEM 317
Score = 26.0 bits (57), Expect = 4.1
Identities = 5/50 (10%), Positives = 23/50 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ A +++ +++ ++K+ ++ +++ K K + + +K
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMK 318
Score = 26.0 bits (57), Expect = 4.9
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
AK + +++ +++ ++KK ++ +++ K K + +
Sbjct: 266 AKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPT 313
Score = 24.9 bits (54), Expect = 9.6
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
++ +EKK + ++ K K + + K + K
Sbjct: 277 IRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
>4sbv_A Southern bean mosaic virus coat protein; coat protein (viral),
icosahedral virus; 2.80A {Southern bean mosaic virus}
SCOP: b.121.4.7
Length = 260
Score = 27.7 bits (60), Expect = 1.3
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
A + K++ + + R+K++ K++ + K
Sbjct: 1 ATRLTKKQLAQAIQNTLPNPPRRKRRAKRRAAQVPKP 37
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 27.2 bits (61), Expect = 1.4
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKK 112
+++ ++ K+ K+K+ + K K
Sbjct: 163 QELLTLETRRNMSLNIDGKRSGKQKRTDRVKGK 195
Score = 24.9 bits (55), Expect = 8.5
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKK 126
++ K+ K+K+ + K K
Sbjct: 170 TRRNMSLNIDGKRSGKQKRTDRVKGK 195
Score = 24.9 bits (55), Expect = 9.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKK 125
R+ K+ K+K+ + K K
Sbjct: 170 TRRNMSLNIDGKRSGKQKRTDRVKGK 195
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 27.5 bits (60), Expect = 1.4
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
P K + + K +K++ K+ K ++ K K K K
Sbjct: 335 PYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
Score = 26.0 bits (56), Expect = 4.5
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+ E + K +K K KR K ++ K K K
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTM 385
Score = 25.6 bits (55), Expect = 6.6
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+K + + K +K++ K+ K ++ K K K
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGK 379
Score = 25.2 bits (54), Expect = 8.6
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
++ + R K +K K K+ K ++ K K K
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYK 383
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 27.0 bits (60), Expect = 1.5
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ +I++ +KK ++ + + K+++ K +K K + K +
Sbjct: 91 LVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 25.5 bits (56), Expect = 4.8
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
++ +KK R+ + + K+++ K +K K + K+
Sbjct: 92 VAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKV 135
Score = 25.5 bits (56), Expect = 5.6
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ + KE +KK +R + R K+++ K +K K
Sbjct: 86 AALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.4 bits (61), Expect = 1.5
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
L +G ++ + + K + + + + K + RK +KKKKKK K +
Sbjct: 332 LMPNGPMRITSGPFEP-DLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATS 390
Query: 127 NKNK 130
+
Sbjct: 391 GETL 394
Score = 25.1 bits (55), Expect = 8.8
Identities = 7/38 (18%), Positives = 20/38 (52%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
+ +++ + +K +KKKKKK + + + ++ +
Sbjct: 361 LKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 27.6 bits (62), Expect = 1.5
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 71 GSRKVFG------PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
G F + ++ K + +K + + K+ KK+
Sbjct: 380 GDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKR 426
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 27.5 bits (60), Expect = 1.6
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
+ KK+ + + + + R K ++ K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 27.1 bits (59), Expect = 1.7
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
I + KK + + + + K ++ K+
Sbjct: 234 IYQLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.7 bits (58), Expect = 2.3
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
+ KK + + + + + K ++ K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 26.3 bits (57), Expect = 3.6
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ KK + + + + + K ++ K+ +
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPE 268
Score = 26.0 bits (56), Expect = 5.1
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ KK + + R + + K ++ K+
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 25.6 bits (55), Expect = 6.3
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ KK + + + + + K ++ K+ +
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELG 270
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 27.2 bits (61), Expect = 1.7
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 28 DSLSD----RLSDRSRLEFISHDISDLVSDDRISAGDFFD 63
D+ + L D L F+ I+D +++ D
Sbjct: 52 DNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPD 91
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.5 bits (61), Expect = 1.7
Identities = 15/80 (18%), Positives = 34/80 (42%)
Query: 56 ISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKK 115
I G+ FL L S + + I E K +K + K+ +++ ++ + K++
Sbjct: 132 IKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEE 191
Query: 116 KKKKKKKKKKKNKNKIIKIN 135
K + K+ + + K+
Sbjct: 192 SLKARLKEMSNLEKEKEKLT 211
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.9 bits (60), Expect = 1.7
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKK 106
T+ + VF I+ + + K+ +++K ++
Sbjct: 162 KTQQNVKAVF---DTAIKVVLQPPRRKEVPRRRKNHRRSG 198
Score = 26.9 bits (60), Expect = 2.2
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 110 KKKKKKKKKKKKKKKKKNKNKIIKI 134
+ ++K+ +++K +++ I I
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIASI 204
Score = 25.4 bits (56), Expect = 5.8
Identities = 2/20 (10%), Positives = 11/20 (55%)
Query: 107 RKKKKKKKKKKKKKKKKKKK 126
+ ++K+ +++K ++
Sbjct: 179 LQPPRRKEVPRRRKNHRRSG 198
Score = 25.0 bits (55), Expect = 9.8
Identities = 3/19 (15%), Positives = 11/19 (57%)
Query: 103 KKKKRKKKKKKKKKKKKKK 121
+ +RK+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 26.8 bits (60), Expect = 1.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 104 KKKRKKKKKKKKKK 117
K++ K K +K
Sbjct: 176 KQENPNAPKSKVRK 189
Score = 26.0 bits (58), Expect = 3.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 98 KKKRKKKKKRKKKK 111
K++ K K +K
Sbjct: 176 KQENPNAPKSKVRK 189
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 27.2 bits (61), Expect = 1.7
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
EK + ++ +K R +++ +++ + KK K+K+ ++
Sbjct: 408 KEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
Score = 26.8 bits (60), Expect = 2.3
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+K+K+ + ++ K R +++ +++ + KK K+ + +
Sbjct: 407 RKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.4 bits (61), Expect = 1.9
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 78 PIHDIIEKAKKK----------KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
PI ++ K +K +EKK ++KK KK + ++ ++++KK K KK K+
Sbjct: 204 PIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEE 263
Query: 128 KNKIIKIN 135
+I ++N
Sbjct: 264 VQEIEELN 271
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 26.8 bits (60), Expect = 1.9
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 104 KKKRKKKKKKKKKKKKKKK 122
++ R++KK K K++
Sbjct: 158 RQGRERKKIAKHLIKEQSD 176
Score = 26.0 bits (58), Expect = 3.7
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 98 KKKRKKKKKRKKKKKKKKK 116
++ R++KK K K++
Sbjct: 158 RQGRERKKIAKHLIKEQSD 176
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 26.7 bits (60), Expect = 2.1
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKK 124
KK+ + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 26.3 bits (59), Expect = 3.0
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
I+K + K+K + K + + K +
Sbjct: 153 IDKMTQVDKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 26.0 bits (58), Expect = 4.4
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKK 122
KKK R K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 25.6 bits (57), Expect = 4.7
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 104 KKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KK+ + K + + K ++ +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 25.6 bits (57), Expect = 5.1
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K+K + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 25.2 bits (56), Expect = 6.2
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKK 119
KKK + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 24.8 bits (55), Expect = 9.2
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 102 KKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
KKK R K + + K + + +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHHH 187
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.1 bits (60), Expect = 2.2
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
+ DI + + KK KK K+ K +K +N
Sbjct: 9 VADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLEN 57
Score = 25.9 bits (57), Expect = 6.1
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
I I+ + + +K K K K+ K +K + N + I
Sbjct: 12 IESILALNPRTQSHAALHSTLAKKLDK--KHWKRNPDKNCFHCEKLENNFDDI 62
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 26.8 bits (59), Expect = 2.3
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
D++ K + K+K + K++ K+ + K+
Sbjct: 151 DVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 26.1 bits (57), Expect = 3.5
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
K ++ K + KRK KK+ KK ++ + K
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K K K K+K K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K K + KRK K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.6 bits (56), Expect = 6.5
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
K K K K+K K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.6 bits (56), Expect = 7.0
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K K K K++ K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.6 bits (56), Expect = 7.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
K K K K+K K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.2 bits (55), Expect = 8.4
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 99 KKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
K + K K+K K+KK K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Score = 25.2 bits (55), Expect = 8.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
K K K K+K K+KK+K
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 26.9 bits (60), Expect = 2.6
Identities = 4/55 (7%), Positives = 18/55 (32%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
GSR + ++ ++++ + K + + + + + +
Sbjct: 267 QGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 26.5 bits (59), Expect = 2.7
Identities = 2/47 (4%), Positives = 16/47 (34%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
++ + + +R+++ + K ++++ +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTAL 311
Score = 26.2 bits (58), Expect = 4.2
Identities = 3/57 (5%), Positives = 17/57 (29%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+R+ + + ++E++ + K + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 26.2 bits (58), Expect = 4.3
Identities = 3/47 (6%), Positives = 15/47 (31%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
A+ E++++ + K + + + + ++
Sbjct: 277 AQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVV 323
Score = 25.8 bits (57), Expect = 5.3
Identities = 1/53 (1%), Positives = 15/53 (28%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
+ +++++ + K + + + + + + +
Sbjct: 270 RTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSV 322
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 26.7 bits (58), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ P+ + +E+ KK + K K+ KK ++ KKK K +KK KK + +
Sbjct: 107 LINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGR 162
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 26.6 bits (59), Expect = 2.7
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 3/25 (12%)
Query: 28 DSLSD---RLSDRSRLEFISHDISD 49
D SD R + F+ DIS
Sbjct: 32 DIGSDAISRFLNHPHFHFVEGDISI 56
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 26.4 bits (58), Expect = 2.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKK 109
+ I++ K+K K++K++RK +K K+
Sbjct: 139 LEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 26.5 bits (59), Expect = 2.8
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 74 KVFGPI-HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKK 118
++ GP+ +I+K +K+K + R + K K+
Sbjct: 248 RILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKE 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.1
Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 22 VNKLLKDSLSDRLSDRSRLEFISHDISDLV-SDDRISAGDF-FDFLRLTESGSRKVFGPI 79
+ + + + D + +I ++ S D +S F L + + F +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF--V 83
Query: 80 HDIIEK-----AKKKKKEKKKKKKKKRKKKKKRKK--------------KKKKKKKKKKK 120
+++ K E+++ R ++R + + + K ++
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 121 KKKKKKNKNKII 132
+ + KN +I
Sbjct: 144 LLELRPAKNVLI 155
Score = 26.4 bits (57), Expect = 4.6
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 22/116 (18%)
Query: 4 ELLPRGRNRNPLWEKFF--AVNKLLKDSLSDRLSD---RSRLE--FI---SHDISDLV-- 51
E + G W+ + +++ SL + L R + + S I ++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 52 --------SDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKK 99
SD + + + + I I + K K + + +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRS 448
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 26.4 bits (58), Expect = 3.2
Identities = 6/52 (11%), Positives = 24/52 (46%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+++A KE++ + KKK+ ++++ ++ + + + ++
Sbjct: 95 LQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL 146
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 26.0 bits (57), Expect = 3.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+IEK ++K++ + K K+ K+ +KK+ K K K +
Sbjct: 149 QTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 25.7 bits (56), Expect = 5.8
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
EK ++K++ R K KK K+ +KK+ K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLA 194
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 26.0 bits (57), Expect = 3.8
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
A K +K K ++ K K K K+K KK
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 25.2 bits (55), Expect = 6.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 24.8 bits (54), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 24.8 bits (54), Expect = 9.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 26.4 bits (58), Expect = 3.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 63 DFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKR 107
D + S I D+ ++ + ++E+K + R K+ R
Sbjct: 979 DVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
Score = 26.0 bits (57), Expect = 5.7
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K++ K K++ + ++++K + + K +++I
Sbjct: 981 KQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVIN 1026
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 26.2 bits (58), Expect = 4.1
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ + ++ KK + + R+ + K+ KK K++ IK
Sbjct: 169 LTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKF 220
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 26.3 bits (57), Expect = 4.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
AKK++ ++ K K K K K KK + KKK ++ + +++K+
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 528
Score = 25.9 bits (56), Expect = 6.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
KA K + K KK KKK ++ +++ K + + +++NK
Sbjct: 495 KADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQI 540
Score = 25.5 bits (55), Expect = 8.0
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + A++ K K K + K K+ + KKK ++ +++ K +
Sbjct: 481 KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDR 534
Score = 25.5 bits (55), Expect = 8.5
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 73 RKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
++ + + K + KK++ ++ K K K K K KK + K +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 133 KIN 135
++
Sbjct: 519 RLE 521
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 25.8 bits (56), Expect = 4.5
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ +V + ++K+KEK K +K+K+ + +K+ +K +KK K +
Sbjct: 142 AHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
Score = 25.0 bits (54), Expect = 7.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+EK+K+K K +KKK+ + +K+ +K +KK K +
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTE 194
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 25.9 bits (56), Expect = 4.5
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
KA++K E+ ++ RK K K+ ++ +K+ + +N I
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
Score = 25.5 bits (55), Expect = 5.4
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K K ++K ++ + +K K+K+ ++ +K+ +
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETA 58
Score = 25.5 bits (55), Expect = 5.9
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
E KK K ++K ++ ++ RK K+K+ ++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2 PDB: 3ocq_A
Length = 168
Score = 25.6 bits (57), Expect = 4.5
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 104 KKKRKKKKKKKKKKK 118
+ +R++ K +KK +
Sbjct: 151 RMRRQEIKAQKKAQS 165
Score = 25.2 bits (56), Expect = 6.7
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 98 KKKRKKKKKRKKKKK 112
+ +R++ K +KK +
Sbjct: 151 RMRRQEIKAQKKAQS 165
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 25.8 bits (57), Expect = 4.6
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 95 KKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
+ + K KKKK K+ KI+
Sbjct: 4 SHHHHHHSSGLVPRGSHMQPVGKPPKKKKSKRILLKIL 41
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 25.9 bits (57), Expect = 4.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKNKN 129
+R +KKK+ K K K + N+N
Sbjct: 348 RRWGLGPVAQKKKQMKADGKLDKYGRVNEN 377
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 26.0 bits (58), Expect = 4.9
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK---------KKKKKKKKKN 127
+K + ++ + + +++R + + K+ KKK+
Sbjct: 728 TPGEKVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAKQLKKKH 780
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 25.9 bits (56), Expect = 4.9
Identities = 6/65 (9%), Positives = 19/65 (29%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
R+ + G I + + E ++ + + + + ++ K
Sbjct: 53 RMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAK 112
Query: 126 KNKNK 130
K +
Sbjct: 113 KTTQR 117
>2j3w_A Sedlin, trafficking protein particle complex protein 2;
multisubunit tethering factor, trapp, palmitate,
transport, lipoprotein; HET: PLM; 2.1A {Mus musculus}
SCOP: d.110.4.3 PDB: 1h3q_A
Length = 142
Score = 25.7 bits (56), Expect = 4.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 9 GRNRNPLWEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFF 62
G + NP++E F + R +FI+H DLV ++ + + +
Sbjct: 13 GHHDNPVFEMEFLPPGKAESKDDHRHL----NQFIAHAALDLVDENMWLSNNMY 62
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 26.0 bits (58), Expect = 5.1
Identities = 6/58 (10%), Positives = 21/58 (36%)
Query: 45 HDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRK 102
+ + ++ R + F R R+ + + ++++E K+ ++
Sbjct: 168 KLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPA 225
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain,
TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma
parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Length = 223
Score = 25.7 bits (57), Expect = 5.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 103 KKKKRKKKKKKKKKKKKKKKKKKKNKN 129
K R ++ K K KK+NKN
Sbjct: 196 KVPNRPYLNSNSEEFIKFFKNKKRNKN 222
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 25.9 bits (56), Expect = 5.2
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ KKE + K+ + + + +K+ + KK K + N
Sbjct: 305 ATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNV 351
Score = 25.1 bits (54), Expect = 8.4
Identities = 10/62 (16%), Positives = 27/62 (43%)
Query: 74 KVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
K F + + K + K++ + K+ R++ + +K+ + KK K ++ + +
Sbjct: 294 KEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGT 353
Query: 134 IN 135
Sbjct: 354 EQ 355
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 25.1 bits (54), Expect = 5.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
E AK KK KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 24.7 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
+ K K+ KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 24.7 bits (53), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 85 KAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
+ K KK KK K +K+ KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 24.7 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKK 119
+ K KK K+ K +KK KK+KK +K
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Length = 327
Score = 25.5 bits (56), Expect = 5.9
Identities = 4/44 (9%), Positives = 14/44 (31%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+ D++ + + +K ++ + K + K
Sbjct: 191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGK 234
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 25.7 bits (57), Expect = 6.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 77 GPIHDIIEKAKKKKKE 92
GPI + + KA K +E
Sbjct: 465 GPIEEAVAKADKLAEE 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 25.8 bits (56), Expect = 6.1
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
KK K ++ + K + + K K K I
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAI 671
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for
eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin
hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Length = 328
Score = 25.5 bits (55), Expect = 6.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 77 GPIHDIIEKAKKKKKEKKKKKKK 99
+ ++EKAK+K+ KK ++ K
Sbjct: 306 QQLIPLVEKAKEKQNAKKAQETK 328
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 25.0 bits (54), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 94 KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
KK K K + K+KKKK K K+K+K N ++
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNSVL 42
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 25.8 bits (56), Expect = 6.5
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K K + + + + + +K+ K++
Sbjct: 143 KTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLV 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 25.4 bits (55), Expect = 6.6
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 90 KKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKN 127
++E + ++++ +K+K+ K K K + K K+
Sbjct: 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSKS 338
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 25.6 bits (55), Expect = 6.6
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 36 DRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKK 95
R +++ I + + D D FL ++ F P I K +
Sbjct: 179 GREQVKVILFE--EFARDPVQVVRDCCAFLGVSTD-----FVPDTSIRHNESGVPKSRSL 231
Query: 96 KKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ K K +++ + K+
Sbjct: 232 YNFIAKPNALKEIVKPFIPAAVRERLGNRAKSMVL 266
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.6 bits (55), Expect = 7.2
Identities = 11/64 (17%), Positives = 35/64 (54%)
Query: 65 LRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
L+ +E+ ++ + +E K+ +EK+++ + ++ + +++ +++ + +K K
Sbjct: 353 LKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK 412
Query: 125 KKNK 128
KK K
Sbjct: 413 KKGK 416
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 24.9 bits (54), Expect = 7.3
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+I+ K + + K+ K RK KK K
Sbjct: 79 MIQLCSKLRNLLHDNELSDLKEDKPRKSLFNDAGNKKGK 117
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus
kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A
1x1p_A
Length = 213
Score = 25.3 bits (56), Expect = 7.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 73 RKVFGPIHDIIEKAKKKKK 91
RK + + I EK + +KK
Sbjct: 195 RKGWKTLKKIAEKVESEKK 213
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport,
iron, metal-binding, oxidoreductase, periplasm,
transport; HET: HEC; 1.74A {Escherichia coli} SCOP:
a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Length = 452
Score = 25.6 bits (55), Expect = 7.6
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKK 123
DI K K ++ ++ K +K+ K + +++ +K
Sbjct: 407 DISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGL 449
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 25.4 bits (55), Expect = 7.6
Identities = 5/52 (9%), Positives = 15/52 (28%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
I + + + KK K+ ++ + +++ K
Sbjct: 101 ITNGDAGELIRTAEALAALNAKKSEKEIWSDVVPFVRRTTDSDFDPSRMYKF 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 25.6 bits (57), Expect = 7.7
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
I D+I + + + K K K K KK+++K ++ + + K+
Sbjct: 591 EIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKE 637
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 25.3 bits (55), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 84 EKAKKKKKEKKKKKKKKRKKKKKRKKKKKKK 114
E+ K +E+ +KKK +KK K++K ++
Sbjct: 154 EQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 25.2 bits (55), Expect = 8.4
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 14/41 (34%)
Query: 54 DRISAGDFFDFLRLT---------ESGSRKVFG-----PIH 80
DR+ D D RLT + + V P+H
Sbjct: 385 DRVYWNDGLDQYRLTPTELKQKFKDMNADAVSAFQLRNPVH 425
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 25.3 bits (54), Expect = 8.6
Identities = 7/62 (11%), Positives = 23/62 (37%)
Query: 67 LTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
TE+ + + I+K +K ++ + K+ + K ++ + +
Sbjct: 457 ATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRLLPALPKAEQVWEGQ 516
Query: 127 NK 128
++
Sbjct: 517 DR 518
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 25.3 bits (56), Expect = 8.6
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K +K K KR +++ K++++ +KK + + K K +
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDV 52
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 24.7 bits (53), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 86 AKKKKKEKKKKKKKKRKKKKKRKKKKKKKKK 116
K + KK K +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 144
Score = 25.0 bits (54), Expect = 8.7
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 83 IEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKK 121
+EK +K+ + + K + KK K K KKK
Sbjct: 106 VEKFRKRFAGLSEIMEIPVLKGEIIMPTKKSKGPKGKKK 144
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 25.3 bits (56), Expect = 8.8
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
PI+ + E ++ K K ++ KK + +KK
Sbjct: 225 PIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKK 273
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 25.0 bits (55), Expect = 8.9
Identities = 7/75 (9%), Positives = 18/75 (24%), Gaps = 20/75 (26%)
Query: 22 VNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRISAGDFFDFLRLTESGSRKVFGPIHD 81
++ + +RL D + ++D R + I
Sbjct: 215 SRAYAGEASQHLDAALARLRNEMDDPALHIADAR------YQC--------------IAA 254
Query: 82 IIEKAKKKKKEKKKK 96
I + + +
Sbjct: 255 ICDVVSNTLTAEPSR 269
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 25.3 bits (55), Expect = 9.2
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 71 GSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
S+ D +E A K + ++ KR K++ ++ + +K K
Sbjct: 299 KSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRKGRQAASGHCRPRKVKADIP 354
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 25.1 bits (55), Expect = 9.2
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 32 DRLSDRSRLEFISHDISD 49
L R+ F DI+
Sbjct: 63 GDLVKHERMHFFEGDITI 80
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 25.1 bits (54), Expect = 9.2
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
K + EK +K K +++K + K++K + K +K + +
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAA 55
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 25.0 bits (55), Expect = 9.2
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 72 SRKVFGPIHD-IIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+++ F + I+ +K K + + + R K +K K K+ +
Sbjct: 108 AKRRFSTGQETILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGR 167
Query: 131 IIK 133
+
Sbjct: 168 LCG 170
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 25.2 bits (56), Expect = 9.4
Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 74 KVFGPIHDII----EKAKKKKKEKKKKKKKKRKKKKKRKKK---KKKKKKKKKKKKKKKK 126
P+ ++ + +++K+ K+ +R ++K K K+ + ++ + K+
Sbjct: 787 TARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKE 846
Query: 127 NKNKIIKIN 135
N + +I
Sbjct: 847 NLEQAERIR 855
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 25.0 bits (54), Expect = 9.5
Identities = 5/57 (8%), Positives = 23/57 (40%)
Query: 72 SRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
S++ F ++A++ ++ + +K +++ + + + + K +
Sbjct: 142 SKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSI 198
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 24.9 bits (54), Expect = 9.5
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 88 KKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
++ +EK+K+K K ++K+ K + K +K ++K + +
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLE 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 25.1 bits (55), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 83 IEKAKKKKKEKKKKKKKKRKK 103
+ K K+K K +K K+K K
Sbjct: 347 LLKVKQKIKAQKDKEKAAYAK 367
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 25.1 bits (54), Expect = 10.0
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 80 HDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNK 130
+ IE+ KK+ ++ ++KKK+ K ++ ++ + K+ K
Sbjct: 30 VESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHKTTK 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.350
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,009,240
Number of extensions: 130723
Number of successful extensions: 9036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5007
Number of HSP's successfully gapped: 1981
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)