RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9943
(135 letters)
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.1 bits (68), Expect = 0.066
Identities = 7/36 (19%), Positives = 22/36 (61%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
F + D + K++KK+ ++KK+ + ++++ ++
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/59 (11%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 73 RKVFGPIHDIIEKAKKKKKEK------KKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+V + + K+ + + ++++KK+ ++KK+ + +++K ++
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 30.0 bits (67), Expect = 0.070
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
+ +S ++ + +E + KK + +++ K K + + KK +KK +
Sbjct: 92 EMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGS 151
Query: 126 KNKNK 130
KN K
Sbjct: 152 KNPQK 156
Score = 25.4 bits (55), Expect = 2.7
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + +K + + KK + +++ + K + + KK +KK + K
Sbjct: 102 LTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQK 156
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.073
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 76 FGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKK 111
F + + + +K+ K++K K K++ ++ K+
Sbjct: 102 FTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.8 bits (64), Expect = 0.19
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 75 VFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKK 117
F +H+ + KE +K+++ + K ++ + K+K +K++
Sbjct: 289 FFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.5 bits (53), Expect = 5.7
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 98 KKKRKKKKKRKKKKKKKKKKKKKKKKKKKNK 128
+ K+ +KR++ ++K ++ K K+K +K +
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.2 bits (52), Expect = 7.2
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 100 KRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKI 131
+ K+ +K+++ ++K ++ K K+K K ++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 29.0 bits (65), Expect = 0.21
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 16 WEKFFAVNKLLKDSLSDRLSDRSRLEFISHDISDLVSDDRI--SAGDFFDFL 65
+ + K LKD L D RS E + D D ++D+ I + + +L
Sbjct: 664 IARIVWMPKSLKDFLHDEFVRRSVEEGLGEDFIDKIADETIGTTVDEILPYL 715
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 27.8 bits (61), Expect = 0.42
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 89 KKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
++ + + KKK + + +++ + + K + KII
Sbjct: 1 RRLWEIVEAKKKDILEIDGENLIVQRRNHRFLEVLSGKERVKII 44
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 26.2 bits (58), Expect = 1.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 70 SGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKK 113
S ++ + DI ++ K E +K K+ +K+K ++ KKK
Sbjct: 118 SAGKESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKK 161
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 25.8 bits (56), Expect = 2.0
Identities = 4/43 (9%), Positives = 19/43 (44%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKK 120
+ I+ ++K +++ + K+ + K ++ + + +
Sbjct: 439 LVPPILTLSRKLQQDPEFLKQNPWTRLLPALPKAEQVWEGQDR 481
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 25.5 bits (55), Expect = 2.5
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 87 KKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKK 126
+ + E K KK ++ KR KK + +
Sbjct: 152 RIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLS 191
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 25.4 bits (55), Expect = 2.7
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKII 132
K + R+ + +++ ++ + K+N II
Sbjct: 9 KDVVQLSLRRPSFRASRQRPIISLNERILEFNKRNITAII 48
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 25.3 bits (54), Expect = 2.9
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 78 PIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
HD +E + ++E K + K+ K +K K + + + N
Sbjct: 123 DYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Score = 25.3 bits (54), Expect = 3.3
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKI 134
+ +E+ K + K+ + +K K + + N+N + +
Sbjct: 132 EFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEA 185
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 25.4 bits (55), Expect = 2.9
Identities = 0/35 (0%), Positives = 10/35 (28%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
++ + + + +++ + +
Sbjct: 102 TDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGD 136
Score = 24.2 bits (52), Expect = 7.1
Identities = 0/37 (0%), Positives = 11/37 (29%)
Query: 97 KKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + + + +++ + ++ +
Sbjct: 102 TDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLG 138
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.0 bits (52), Expect = 3.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIK 133
+K R K +K K K + + K I+
Sbjct: 15 QKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 47
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 24.7 bits (53), Expect = 4.0
Identities = 9/57 (15%), Positives = 25/57 (43%)
Query: 66 RLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKK 122
L + P+ ++ +K ++ + + KK + ++ KKK++ K ++
Sbjct: 120 SLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEE 176
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.3 bits (52), Expect = 4.8
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 82 IIEKAKKKKKEKKKKKKKKRKKKKKRK 108
E+ K K+E + + + +++
Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKE 181
Score = 24.3 bits (52), Expect = 5.9
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 92 EKKKKKKKKRKKKKKRKKKKKKKKK 116
E+ K K++ + R + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
Score = 23.9 bits (51), Expect = 6.0
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 101 RKKKKKRKKKKKKKKKKKKKKKKK 124
R K KR+ + + + + +K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 24.7 bits (53), Expect = 4.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 93 KKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKKKNKNKIIKIN 135
K K+ + KR K+ + K K K KKK K++ I
Sbjct: 16 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIF 58
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
Thermococcus kodakaraensis [TaxId: 311400]}
Length = 213
Score = 24.3 bits (52), Expect = 5.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 73 RKVFGPIHDIIEKAKKKKK 91
RK + + I EK + +KK
Sbjct: 195 RKGWKTLKKIAEKVESEKK 213
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 24.0 bits (51), Expect = 6.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKKKK 105
++ +++ A K K +KK K++ + K
Sbjct: 19 LNSLLQLAAKLKADKKSGKEEAKLTGK 45
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 23.9 bits (52), Expect = 6.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 55 RISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKK 91
+I AG++ L E V GPI + + KA K +
Sbjct: 86 QILAGEYDH---LPEQAFYMV-GPIEEAVAKADKLAE 118
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 24.0 bits (51), Expect = 6.5
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 79 IHDIIEKAKKKKKEKKKKKKKKRKK 103
+ DI K K +K K
Sbjct: 15 LEDIFALTDKYSKNLNDTRKILSGK 39
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
[TaxId: 562]}
Length = 204
Score = 24.1 bits (52), Expect = 7.2
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 81 DIIEKAKKKKKEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKKK 125
D+ K+ + + K K ++ + RK + + ++K+K +
Sbjct: 16 DLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVR 60
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 24.1 bits (51), Expect = 7.3
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 49 DLVSDDRISAGDFFDFLRLTESGSRKVFGPIHDIIEKAKKKKKEKKKKKKKKRKKKKKRK 108
L+SD G DFL L ++ H K K KK + + K K
Sbjct: 179 RLISDPAGELGRVQDFLGLK-----RIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTK 233
Query: 109 KKKKKKKKKKKKKKKKKKNKNKIIK 133
+ + ++ ++ ++ + +K
Sbjct: 234 GRTHPEIDREVVRRLREFYRPFNLK 258
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 23.8 bits (51), Expect = 9.5
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 91 KEKKKKKKKKRKKKKKRKKKKKKKKKKKKKKKKK 124
K+ + +K+R K K+ + +K +
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.350
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,911
Number of extensions: 29402
Number of successful extensions: 2267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 601
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.6 bits)