BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9944
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho
Gtpase Activating Protein 5 Variant
Length = 209
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EG+YR SG+ T+ + +F QD + L + T + V+ LK FF DLP+PL+
Sbjct: 42 GLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIP 100
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
LH L AA + TE ++H + +++K HP++Y R ++ HL + ++ N M+
Sbjct: 101 YSLHPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 159
Query: 124 ENLASIWGPTLM 135
+NL+ + PTLM
Sbjct: 160 DNLSICFWPTLM 171
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap
Domain From Human Rho Gtpase Activating Protein 5
Variant
Length = 219
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EG+YR SG+ T+ + +F QD + L + T + V+ LK FF DLP+PL+
Sbjct: 52 GLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIP 110
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
LH L AA + TE ++H + +++K HP++Y R ++ HL + ++ N M+
Sbjct: 111 YSLHPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTA 169
Query: 124 ENLASIWGPTLM 135
+NL+ + PTLM
Sbjct: 170 DNLSICFWPTLM 181
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
+ G SEG+YR SG T ++ + F +D + +S Y + ++ T LK +FRDLP P
Sbjct: 301 ARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIP 360
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
+++ + + +AA + A E ++ +L L P HY T+R LM HL + + N
Sbjct: 361 VITYDTYSKFIDAAKISNADE-RLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 419
Query: 121 MSVENLASIWGPTLM 135
M+ ENL ++GPTLM
Sbjct: 420 MNAENLGIVFGPTLM 434
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
+GIYR SG+ + KL Q+ ++ L Q+ + H V+ LK FFR+LPEPL
Sbjct: 54 DGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSF 112
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
A + ++ +SL++KL P + T++ L GHL I K +N MS ++L
Sbjct: 113 FEQFVEAIKKQ-DNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171
Query: 127 ASIWGPTLMHVENWTTVIVV 146
++GPTL+ EN T + +
Sbjct: 172 GIVFGPTLLRAENETGNMAI 191
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics
pdb|3IUG|B Chain B, Crystal Structure Of The Rhogap Domain Of Rics
Length = 229
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQV-QLSREQYTE--HDVSTVLKRFFRDLPEPLLST 64
+GIYR SG +N+ +L EF D+ V L++E Y + H V ++ K +FR+LP PLL+
Sbjct: 55 DGIYRLSGVASNIQRLRHEF--DSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTY 112
Query: 65 ELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
+L+ +A E + I+ ++++L P HY T+ LM HL + + M +
Sbjct: 113 QLYEKFSDAVSAATDEERLIKIH-DVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAK 171
Query: 125 NLASIWGPTLM 135
NLA +W P L+
Sbjct: 172 NLAIVWAPNLL 182
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin
Length = 202
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
S G SEG+YR SG + + + F +D + +S Y + ++ T LK +FRDLP P
Sbjct: 37 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP 96
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
L++ + + +A + ++++ L+ L P H T+R LM HL + + N
Sbjct: 97 LITYDAYPKFIESAKI-MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 155
Query: 121 MSVENLASIWGPTLM 135
M+ ENL ++GPTLM
Sbjct: 156 MNAENLGIVFGPTLM 170
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEP 60
S G SEG+YR SG + + + F +D + +S Y + ++ T LK +FRDLP P
Sbjct: 298 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIP 357
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
L++ + + +A + ++++ L+ L P H T+R LM HL + + N
Sbjct: 358 LITYDAYPKFIESAKI-MDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENL 416
Query: 121 MSVENLASIWGPTLM 135
M+ ENL ++GPTLM
Sbjct: 417 MNAENLGIVFGPTLM 431
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGIYR SG+ + + L +F QD + L+ + +T + V+ +K FF +LP+PL+
Sbjct: 83 GLSTEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVP 141
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
+ + L A + E K+H + +L+K ++ + ++ HL + N M+
Sbjct: 142 YNMQIDLVEAHKIN-DREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTS 200
Query: 124 ENLASIWGPTLM 135
ENL+ + PTLM
Sbjct: 201 ENLSICFWPTLM 212
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|B Chain B, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|C Chain C, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 199
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
+EGI+RRS +T V ++ ++ + + +QY E H + +LK F R+LPEPLL+ +
Sbjct: 45 TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 101
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ H+ ++ + +V +L+ L +Y +R L L I D+NKM+ N
Sbjct: 102 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 159
Query: 126 LASIWGPTLM 135
LA ++GP L+
Sbjct: 160 LAVVFGPNLL 169
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX
Length = 203
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
+EGI+RRS +T V ++ ++ + + +QY E H + +LK F R+LPEPLL+ +
Sbjct: 41 TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 97
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ H+ ++ + +V +L+ L +Y +R L L I D+NKM+ N
Sbjct: 98 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 155
Query: 126 LASIWGPTLM 135
LA ++GP L+
Sbjct: 156 LAVVFGPNLL 165
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1RGP|A Chain A, Gtpase-Activation Domain From Rhogap
Length = 242
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
+EGI+RRS +T V ++ ++ + + +QY E H + +LK F R+LPEPLL+ +
Sbjct: 80 TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 136
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ H+ ++ + +V +L+ L +Y +R L L I D+NKM+ N
Sbjct: 137 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 194
Query: 126 LASIWGPTLM 135
LA ++GP L+
Sbjct: 195 LAVVFGPNLL 204
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 198
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
+EGI+RRS +T V ++ ++ + + +QY H + +LK F R+LPEPLL+ +
Sbjct: 44 TEGIFRRSANTQVVREVQQKYNMG---LPVDFDQYNALHLPAVILKTFLRELPEPLLTFD 100
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ H+ ++ + +V +L+ L +Y +R L L I D+NKM+ N
Sbjct: 101 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 158
Query: 126 LASIWGPTLM 135
LA ++GP L+
Sbjct: 159 LAVVFGPNLL 168
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap
Length = 234
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
+EGI+ RS +T V ++ ++ + + +QY E H + +LK F R+LPEPLL+ +
Sbjct: 72 TEGIFARSANTQVVREVQQKYNMG---LPVDFDQYNELHLPAVILKTFLRELPEPLLTFD 128
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ H+ ++ + +V +L+ L +Y +R L L I D+NKM+ N
Sbjct: 129 LYPHVVGFLNIDES--QRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 186
Query: 126 LASIWGPTLM 135
LA ++GP L+
Sbjct: 187 LAVVFGPNLL 196
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|B Chain B, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|C Chain C, Crystal Structure Of The Rhogap Domain Of Arhgap11a
pdb|3EAP|D Chain D, Crystal Structure Of The Rhogap Domain Of Arhgap11a
Length = 271
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+EG++R+SGS + L + + D + LS D++ +LK+FFR+LPEP+L +L
Sbjct: 100 TEGLFRKSGSVIRLKAL--KNKVDHGEGCLSSAPPC--DIAGLLKQFFRELPEPILPADL 155
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
H L A + ++K + S L H +H +R L + + NKM NL
Sbjct: 156 HEALLKAQQLGTEEKNKATLLLSCLLADHTVH--VLRYFFNFLRNVSLRSSENKMDSSNL 213
Query: 127 ASIWGPTLMH 136
A I+ P L+
Sbjct: 214 AVIFAPNLLQ 223
>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase
Regulator Associated With Focal Adhesion Kinase
Length = 231
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLP 58
+ G +G+YR G + V KLL+ + E E ++ T+ LK + R LP
Sbjct: 50 TRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLP 109
Query: 59 EPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDR 118
PL+ + AA +E E +V SL+ +L + + LM HL + + +
Sbjct: 110 GPLMMYQFQRSFIKAAKLE-NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQ 168
Query: 119 NKMSVENLASIWGPTLMHVENWTTVIVV 146
N M+V NL ++GPTL+ + T ++
Sbjct: 169 NLMTVANLGVVFGPTLLRPQEETVAAIM 196
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
+G +++GI+R+S + + +L E +V L E +++VLK F R++P +
Sbjct: 40 KGPLTKGIFRQSANVKSCREL-KEKLNSGVEVHLDCESI--FVIASVLKDFLRNIPGSIF 96
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
S++L+ H + + E+K++ + LL++L + V +R L G L+ I++ N+M+
Sbjct: 97 SSDLYDHWVSVMD-QGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMT 155
Query: 123 VENLASIWGPTLM 135
NLA P+++
Sbjct: 156 AFNLAVCVAPSIL 168
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating
Protein 1 (Racgap1) Mgcracgap
Length = 201
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G G+YR SG V +L +F + V L + H + ++LK F R+L EPLL+
Sbjct: 32 GLTETGLYRISGCDRTVKELKEKFLR-VKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLT 90
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
L+ AA + +Y+++ E L + T+ LM HL + + KM V
Sbjct: 91 FRLNRAFMEAAEITDEDNSIAAMYQAVGE-LPQANRDTLAFLMIHLQRVAQSP-HTKMDV 148
Query: 124 ENLASIWGPTLM 135
NLA ++GPT++
Sbjct: 149 ANLAKVFGPTIV 160
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain
Length = 228
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 27/141 (19%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
G++R+SG + + + L + + A ++ E + +DV+ +LK++FRDLPEPL++ +L
Sbjct: 56 GLFRKSGVKSRI-QALRQMNEGAIDC-VNYEGQSAYDVADMLKQYFRDLPEPLMTNKL-- 111
Query: 69 HLCNAAGMECATEDKVHIYRSLL--EKLHPIHYVTV-------RKLMGHLYFIQE---KK 116
+E + IY+ + ++L I + L LYF+ +
Sbjct: 112 -----------SETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAV 160
Query: 117 DRNKMSVENLASIWGPTLMHV 137
N+M+ NLA P+L H+
Sbjct: 161 KENQMTPTNLAVCLAPSLFHL 181
>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
Length = 216
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 13 RSGSTTNVSKLLAEFRQ--DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHL 70
R+ S++N LAE RQ D + E H ++ KR+ DLP P++ ++ +
Sbjct: 48 RTQSSSN----LAELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEM 103
Query: 71 CNAAGMECATEDKVHIYRSLLEKLHPIH--YVTVRKLMGHLYFIQEKKDRNKMSVENLAS 128
+ A ++E+ + + + L+ H ++T++ L+ H + + + +N ++ L+
Sbjct: 104 ISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSE 163
Query: 129 IWGPTLMH 136
I+ P L
Sbjct: 164 IFSPMLFR 171
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 42 TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVT 101
+ H V+ L F LPEP++ EL+ ++A I R ++ +L H
Sbjct: 224 SNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-------DPRICRQVISQLPRCHRNV 276
Query: 102 VRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMH 136
R LM L + + + N ++ +A+++ L+
Sbjct: 277 FRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 311
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 42 TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVT 101
+ H V+ L F LPEP++ EL+ ++A I R ++ +L H
Sbjct: 248 SNHSVAEALLIFLEALPEPVICYELYQRCLDSAY-------DPRICRQVISQLPRCHRNV 300
Query: 102 VRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMH 136
R LM L + + + N ++ +A+++ L+
Sbjct: 301 FRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 335
>pdb|1HJB|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM
THE Csf-1r Promoter
pdb|1HJB|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM
THE Csf-1r Promoter
pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM
THE Csf-1r Promoter
pdb|1HJB|E Chain E, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM
THE Csf-1r Promoter
Length = 87
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 35 QLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
QLSRE T L+ F+ LPEPLL++ H
Sbjct: 61 QLSRELST-------LRNLFKQLPEPLLASSGHC 87
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
Length = 193
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 21 SKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTE 65
SKL E QD L +TEH++ K F RD P LS E
Sbjct: 6 SKLRPEVMQDL----LESTDFTEHEIQEWYKGFLRDCPSGHLSME 46
>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 260
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 85 HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLAS 128
HIYR L K + R LM H++ ++ +K + + E LA+
Sbjct: 118 HIYRELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQLAA 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,140,453
Number of Sequences: 62578
Number of extensions: 187223
Number of successful extensions: 588
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 25
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)