Query psy9944
Match_columns 183
No_of_seqs 119 out of 1090
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:39:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.4E-39 3E-44 249.6 16.2 149 2-154 33-181 (182)
2 cd04372 RhoGAP_chimaerin RhoGA 100.0 7E-39 1.5E-43 248.0 16.4 138 2-140 29-167 (194)
3 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 3.6E-38 7.8E-43 246.1 16.1 154 2-156 21-200 (208)
4 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3.6E-38 7.9E-43 242.7 14.7 139 2-141 31-169 (188)
5 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 5.9E-38 1.3E-42 242.8 14.9 137 2-139 29-165 (196)
6 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 1.1E-37 2.3E-42 240.6 16.1 151 3-154 36-189 (190)
7 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 8.5E-38 1.8E-42 240.6 15.5 139 2-142 29-168 (187)
8 cd04407 RhoGAP_myosin_IXB RhoG 100.0 1.1E-37 2.4E-42 239.6 15.9 135 2-139 28-162 (186)
9 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 1.4E-37 3.1E-42 244.3 16.3 154 2-156 35-209 (216)
10 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 2.3E-37 5E-42 241.0 16.9 152 2-154 33-201 (203)
11 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 4.4E-37 9.5E-42 239.7 17.5 151 2-156 22-204 (206)
12 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 3.8E-37 8.1E-42 237.8 16.2 134 2-138 28-163 (200)
13 cd04406 RhoGAP_myosin_IXA RhoG 100.0 2.4E-37 5.2E-42 237.7 15.1 136 2-140 28-163 (186)
14 cd04390 RhoGAP_ARHGAP22_24_25 100.0 4.2E-37 9E-42 238.9 16.3 137 2-140 35-172 (199)
15 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 4E-37 8.6E-42 236.4 15.7 137 2-140 28-164 (185)
16 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 7.5E-37 1.6E-41 236.3 16.7 149 2-154 28-190 (192)
17 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 7.4E-37 1.6E-41 237.7 15.8 139 2-141 41-183 (203)
18 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1E-36 2.3E-41 234.0 16.4 138 2-140 28-165 (184)
19 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.9E-37 1.5E-41 236.4 15.4 135 2-140 30-164 (193)
20 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.3E-36 2.8E-41 238.4 16.9 153 2-156 40-211 (213)
21 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.3E-36 2.8E-41 239.2 16.8 135 2-139 33-167 (220)
22 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 8.7E-37 1.9E-41 237.2 15.4 139 2-142 29-178 (200)
23 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 8.6E-37 1.9E-41 236.3 14.8 137 2-141 31-169 (195)
24 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 1.1E-36 2.3E-41 237.5 14.3 140 2-141 31-173 (207)
25 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 2.5E-36 5.5E-41 234.0 15.9 138 2-140 31-169 (196)
26 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2.6E-36 5.6E-41 234.8 15.4 133 2-139 32-164 (202)
27 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 4.2E-36 9E-41 232.1 15.9 138 2-140 29-169 (192)
28 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 4.8E-36 1E-40 233.6 14.6 137 2-140 29-178 (203)
29 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 5E-36 1.1E-40 236.7 14.7 139 2-140 45-200 (225)
30 cd04377 RhoGAP_myosin_IX RhoGA 100.0 8E-36 1.7E-40 229.5 15.1 136 2-140 28-163 (186)
31 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 6.5E-36 1.4E-40 234.0 14.3 137 2-140 29-186 (211)
32 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 2.7E-35 5.9E-40 228.1 15.6 146 2-152 36-195 (195)
33 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 4.9E-35 1.1E-39 225.6 15.0 138 2-141 33-170 (189)
34 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 2.2E-34 4.8E-39 221.5 15.3 132 2-143 35-168 (187)
35 smart00324 RhoGAP GTPase-activ 100.0 5.7E-33 1.2E-37 211.0 16.5 139 2-142 16-154 (174)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 8E-33 1.7E-37 216.6 14.8 147 8-154 41-210 (212)
37 cd00159 RhoGAP RhoGAP: GTPase- 100.0 7.5E-32 1.6E-36 203.2 15.3 137 2-141 13-149 (169)
38 PF00620 RhoGAP: RhoGAP domain 100.0 9.5E-33 2.1E-37 205.0 10.1 137 2-140 13-149 (151)
39 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 2.3E-31 4.9E-36 209.6 12.8 130 2-141 63-197 (220)
40 KOG4269|consensus 100.0 7.5E-31 1.6E-35 231.1 11.1 154 2-156 933-1087(1112)
41 KOG4270|consensus 100.0 2.3E-29 5E-34 217.8 12.0 136 2-141 180-315 (577)
42 KOG2200|consensus 100.0 1.9E-29 4.1E-34 214.9 11.3 135 2-137 329-463 (674)
43 KOG4407|consensus 100.0 3.2E-29 7E-34 226.5 11.3 152 2-156 1187-1357(1973)
44 KOG1451|consensus 99.9 4.8E-27 1E-31 200.2 12.9 153 3-156 402-571 (812)
45 KOG1450|consensus 99.9 1.7E-26 3.6E-31 201.0 11.2 137 2-140 485-622 (650)
46 KOG3564|consensus 99.9 5.5E-26 1.2E-30 189.9 12.8 132 2-137 375-506 (604)
47 KOG2710|consensus 99.9 5.9E-26 1.3E-30 190.0 11.3 135 2-137 107-254 (412)
48 KOG1117|consensus 99.9 1.3E-24 2.8E-29 191.5 10.9 154 2-156 740-900 (1186)
49 KOG4406|consensus 99.9 2.8E-24 6.1E-29 177.6 9.2 155 3-162 285-455 (467)
50 KOG1453|consensus 99.9 9.7E-24 2.1E-28 194.1 10.3 136 2-140 631-772 (918)
51 KOG1452|consensus 99.8 1.8E-19 3.8E-24 144.9 8.6 154 2-155 213-378 (442)
52 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.7 2.2E-17 4.8E-22 127.2 11.5 136 2-140 19-167 (198)
53 KOG4271|consensus 99.7 4.9E-18 1.1E-22 151.3 4.7 131 3-135 946-1076(1100)
54 cd04405 RhoGAP_BRCC3-like RhoG 99.7 4.5E-16 9.8E-21 121.4 12.3 147 7-156 59-232 (235)
55 KOG4724|consensus 99.6 2.6E-16 5.6E-21 136.5 6.2 132 2-138 109-240 (741)
56 KOG4370|consensus 99.5 2.9E-14 6.2E-19 118.5 8.3 154 2-156 84-275 (514)
57 KOG3565|consensus 99.1 9.7E-11 2.1E-15 104.3 6.3 135 3-140 232-368 (640)
58 PF08101 DUF1708: Domain of un 98.6 3.7E-07 8.1E-12 77.9 10.2 137 2-141 21-170 (420)
59 KOG4724|consensus 97.5 6.2E-05 1.3E-09 66.7 2.8 136 2-140 444-591 (741)
60 KOG1453|consensus 96.8 0.003 6.5E-08 59.5 6.2 142 2-144 494-674 (918)
61 KOG4271|consensus 96.2 0.0043 9.3E-08 57.3 3.5 133 2-136 384-536 (1100)
62 KOG1449|consensus 95.1 0.0038 8.2E-08 54.9 -1.1 37 107-143 2-38 (670)
63 KOG1449|consensus 85.2 0.11 2.3E-06 46.1 -2.4 83 42-139 273-355 (670)
64 KOG4370|consensus 57.8 44 0.00095 29.2 6.6 73 41-115 118-196 (514)
65 PF02520 DUF148: Domain of unk 56.4 61 0.0013 22.3 6.3 54 49-109 55-109 (113)
66 cd08048 TAF11 TATA Binding Pro 54.5 51 0.0011 21.9 5.3 55 11-71 12-82 (85)
67 COG4835 Uncharacterized protei 44.3 20 0.00043 25.1 2.1 45 9-57 62-106 (124)
68 PRK14101 bifunctional glucokin 43.9 45 0.00097 30.5 4.9 75 50-130 302-384 (638)
69 PF04282 DUF438: Family of unk 43.4 88 0.0019 20.1 5.6 53 49-102 1-54 (71)
70 PF08281 Sigma70_r4_2: Sigma-7 43.1 40 0.00086 19.6 3.1 36 85-131 2-37 (54)
71 PF04545 Sigma70_r4: Sigma-70, 41.6 33 0.00071 19.8 2.6 33 90-133 1-33 (50)
72 COG2747 FlgM Negative regulato 39.3 73 0.0016 21.7 4.2 34 16-56 59-92 (93)
73 PF04316 FlgM: Anti-sigma-28 f 36.1 93 0.002 18.7 4.0 30 16-52 26-55 (57)
74 PF03471 CorC_HlyC: Transporte 34.2 32 0.0007 22.2 1.9 45 7-59 4-48 (81)
75 TIGR03209 P21_Cbot clostridium 34.1 1.2E+02 0.0025 21.4 5.0 40 83-133 97-136 (142)
76 PF01418 HTH_6: Helix-turn-hel 34.1 73 0.0016 20.3 3.5 41 84-130 4-44 (77)
77 TIGR02952 Sig70_famx2 RNA poly 33.3 1.2E+02 0.0026 21.8 5.1 40 83-133 112-151 (170)
78 PF01099 Uteroglobin: Uteroglo 30.6 1.4E+02 0.003 18.6 5.5 44 63-106 15-58 (67)
79 PRK09642 RNA polymerase sigma 28.8 1.5E+02 0.0032 21.3 4.9 40 83-133 96-135 (160)
80 TIGR03824 FlgM_jcvi flagellar 27.9 1.2E+02 0.0025 20.4 3.8 30 16-52 64-93 (95)
81 PRK12527 RNA polymerase sigma 27.0 1.9E+02 0.004 20.7 5.1 40 83-133 95-134 (159)
82 smart00096 UTG Uteroglobin. 26.3 1.8E+02 0.0039 18.6 4.9 44 63-106 17-60 (69)
83 PRK07037 extracytoplasmic-func 24.9 2E+02 0.0044 20.5 5.0 40 83-133 99-138 (163)
84 PRK11302 DNA-binding transcrip 24.5 1.2E+02 0.0027 24.1 4.1 40 84-129 4-43 (284)
85 PF15063 TC1: Thyroid cancer p 24.4 1.1E+02 0.0023 20.0 2.9 34 8-51 43-76 (79)
86 PRK06759 RNA polymerase factor 23.8 2.2E+02 0.0047 20.1 5.0 42 81-133 94-135 (154)
87 PF03540 TFIID_30kDa: Transcri 23.8 1.7E+02 0.0037 17.5 3.5 31 60-91 1-31 (51)
88 PRK12798 chemotaxis protein; R 23.6 3.1E+02 0.0067 24.0 6.3 64 42-106 200-263 (421)
89 PRK09047 RNA polymerase factor 23.4 2.1E+02 0.0045 20.3 4.8 39 83-132 96-134 (161)
90 PRK11337 DNA-binding transcrip 22.3 1.6E+02 0.0035 23.7 4.4 46 79-130 11-56 (292)
91 PF06297 PET: PET Domain; Int 22.1 1.6E+02 0.0036 20.4 3.7 42 44-98 27-68 (106)
92 cd03567 VHS_GGA VHS domain fam 21.8 2.8E+02 0.0061 20.1 5.1 35 82-116 35-69 (139)
93 PRK12529 RNA polymerase sigma 21.1 2.6E+02 0.0055 20.6 5.0 40 83-133 117-156 (178)
94 PRK12528 RNA polymerase sigma 20.4 2.7E+02 0.0057 19.9 4.9 38 85-133 105-142 (161)
95 PF08525 OapA_N: Opacity-assoc 20.4 1E+02 0.0022 16.1 1.9 20 90-109 2-21 (30)
No 1
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.4e-39 Score=249.56 Aligned_cols=149 Identities=25% Similarity=0.422 Sum_probs=140.6
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..+++++++.+++|.. .+.+++|+|++|++||.|||+||+||+|.++|+.|.++.+. .+..
T Consensus 33 ~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~---~~~~~~d~h~va~lLK~fLReLP~pLi~~~~~~~~~~~~~~-~~~~ 108 (182)
T cd04381 33 KHGMKCEGIYKVSGIKSKVDELKAAYNRRES---PNLEEYEPPTVASLLKQYLRELPEPLLTKELMPRFEEACGR-PTEA 108 (182)
T ss_pred HhCCCCCceeecCCcHHHHHHHHHHHcCCCC---CCccccChHHHHHHHHHHHHhCCCccCCHHHHHHHHHHcCC-CCHH
Confidence 4699999999999999999999999999873 33457899999999999999999999999999999998887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGP 154 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~ 154 (183)
+++..++.++.+||+.|+.+|++|+.||.+|+.|++.||||++|||+||||+|+.+.+....+++||+.+|+.
T Consensus 109 ~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~li~~~~~if~~ 181 (182)
T cd04381 109 EREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQISNRLLYALLTHCQELFGN 181 (182)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCcHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=7e-39 Score=247.96 Aligned_cols=138 Identities=32% Similarity=0.522 Sum_probs=126.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+.+|||||++|+..+++++++.+++++...+++...+ |+|++|++||.|||+||+||+|.+.|+.|+++.+. .+.
T Consensus 29 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~pLi~~~~~~~~~~~~~~-~~~ 107 (194)
T cd04372 29 ARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKI-SNP 107 (194)
T ss_pred HcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCH
Confidence 5899999999999999999999999998654445443333 89999999999999999999999999999999887 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
++++..++.++.+||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+++++.
T Consensus 108 ~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P~Ll~~~~~ 167 (194)
T cd04372 108 DERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPED 167 (194)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCCc
Confidence 899999999999999999999999999999999999999999999999999999999754
No 3
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-38 Score=246.09 Aligned_cols=154 Identities=25% Similarity=0.383 Sum_probs=134.5
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-----
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM----- 76 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~----- 76 (183)
++|+.+|||||++|+..+++++++.+++|. ..++....+|+|++|++||.|||+||+||+|.+.|+.|+.+++.
T Consensus 21 ~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~-~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~y~~~~~i~~l~~~~~ 99 (208)
T cd04392 21 EKNLRVEGLFRKPGNSARQQELRDLLNSGT-DLDLESGGFHAHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDE 99 (208)
T ss_pred HhCCCCcceeeCCCcHHHHHHHHHHHHcCC-CCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhhcccc
Confidence 469999999999999999999999999986 34444456799999999999999999999999999999876641
Q ss_pred ------CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh----------
Q psy9944 77 ------ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW---------- 140 (183)
Q Consensus 77 ------~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~---------- 140 (183)
..+.+.++..++.++.+||+.||.+|++|+.||++|++|++.||||+.|||+||||+|++|++.
T Consensus 100 ~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~ 179 (208)
T cd04392 100 KGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRNLTPEDLHENAQ 179 (208)
T ss_pred cccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHhCcccCCCCCCCHHHHHHHHH
Confidence 1355677899999999999999999999999999999999999999999999999999998632
Q ss_pred -----hHHHHHHhhhhcCCCC
Q psy9944 141 -----TTVIVVTYYQVKGPSS 156 (183)
Q Consensus 141 -----~~~~~~~~~~~f~~~~ 156 (183)
.+.++++|..+|..+.
T Consensus 180 ~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 180 KLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCcH
Confidence 2456688888888754
No 4
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3.6e-38 Score=242.74 Aligned_cols=139 Identities=29% Similarity=0.406 Sum_probs=127.0
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..+++++++.+++|.+......+.+|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+..
T Consensus 31 ~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepLip~~~~~~~~~~~~~-~~~~ 109 (188)
T cd04383 31 LYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKL-ENPT 109 (188)
T ss_pred HcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCHH
Confidence 479999999999999999999999999987432222345699999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
+++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|++.++..
T Consensus 110 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~p~~~ 169 (188)
T cd04383 110 ERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQ 169 (188)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeeeccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999976543
No 5
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=5.9e-38 Score=242.84 Aligned_cols=137 Identities=32% Similarity=0.492 Sum_probs=126.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++++........+..|+|++|++||.|||+||+||+|.++|+.|.++.+. .++.
T Consensus 29 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPePLip~~~y~~~~~~~~~-~~~~ 107 (196)
T cd04387 29 RRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIAL-SDPV 107 (196)
T ss_pred HhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHc-CCHH
Confidence 479999999999999999999999999986433333446799999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN 139 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~ 139 (183)
.+...++.++.+||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+|++++.
T Consensus 108 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~ 165 (196)
T cd04387 108 AKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSE 165 (196)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccccCCCCc
Confidence 8999999999999999999999999999999999999999999999999999999963
No 6
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-37 Score=240.64 Aligned_cols=151 Identities=25% Similarity=0.348 Sum_probs=138.6
Q ss_pred CC-CCCCCccccCCCHHHHHHHHHHHhccCccccCC--cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944 3 EG-SMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS--REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA 79 (183)
Q Consensus 3 ~g-l~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~--~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~ 79 (183)
+| +.+|||||++|+..+++++++.++++.. .++. .+.+|+|++|++||.|||+||+||+|.++|+.|..+.+...+
T Consensus 36 ~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~-~~~~~~~~~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~ 114 (190)
T cd04400 36 NRAIYEEGIFRLSGSASVIKQLKERFNTEYD-VDLFSSSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHD 114 (190)
T ss_pred cCCcCCCCeeeCCCcHHHHHHHHHHHcCCCC-CCccccccccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCC
Confidence 45 7999999999999999999999999852 2221 235699999999999999999999999999999998877448
Q ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCC
Q psy9944 80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGP 154 (183)
Q Consensus 80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~ 154 (183)
..+++..++.++.+||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|++|.+....++.+|+.+|+.
T Consensus 115 ~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLa~vf~P~L~~~~~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 115 RSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTLNIPAGIFVLFLTDFDCIFGG 189 (190)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHhhhhcCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.5e-38 Score=240.63 Aligned_cols=139 Identities=32% Similarity=0.481 Sum_probs=127.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+...+++++..+|.+.. .++. .+..|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+.
T Consensus 29 ~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~-~~~~~~~~~d~h~va~lLK~fLReLPepLi~~~~~~~~~~~~~~-~~~ 106 (187)
T cd04403 29 KRGLDVDGIYRVSGNLAVIQKLRFAVDHDEK-LDLDDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKL-SDY 106 (187)
T ss_pred HhCCCcCceeeecCcHHHHHHHHHHhcCCCC-CCccccccccHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHC-CCH
Confidence 4799999999999999999999999999763 2222 234599999999999999999999999999999999887 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT 142 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~ 142 (183)
++++..++.++.+||+.|+.+|++|+.||++|+.+++.||||+.|||+||||+|+|++..+.
T Consensus 107 ~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ll~~~~~~~ 168 (187)
T cd04403 107 EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRPEQETG 168 (187)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhccccccCCCCcch
Confidence 89999999999999999999999999999999999999999999999999999999986654
No 8
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.1e-37 Score=239.60 Aligned_cols=135 Identities=29% Similarity=0.487 Sum_probs=125.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++.|.... ..+.+|+|++|++||+|||+||+||+|.+.|+.|+.+... .+..
T Consensus 28 ~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~--~~~~~d~h~va~lLK~flReLPepLi~~~~~~~~~~~~~~-~~~~ 104 (186)
T cd04407 28 MHGLYTEGIYRKSGSANRMKELHQLLQADPENV--KLENYPIHAITGLLKQWLRELPEPLMTFAQYNDFLRAVEL-PEKQ 104 (186)
T ss_pred HcCCCCCceeecCCCHHHHHHHHHHHhcCCccc--CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHC-CCHH
Confidence 579999999999999999999999999886333 3357799999999999999999999999999999998877 6778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN 139 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~ 139 (183)
+++..++.++.+||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+|+++
T Consensus 105 ~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~ 162 (186)
T cd04407 105 EQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD 162 (186)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccCCCC
Confidence 8899999999999999999999999999999999999999999999999999999764
No 9
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.4e-37 Score=244.27 Aligned_cols=154 Identities=25% Similarity=0.374 Sum_probs=136.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+.++++++++.++++.+.....++.+|+|++|++||+|||+||+||+|.+.|+.|..+.+. .+..
T Consensus 35 ~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~-~~~~ 113 (216)
T cd04391 35 ERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGL-PSKK 113 (216)
T ss_pred HcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCHH
Confidence 579999999999999999999999999875333455567899999999999999999999999999999998876 6778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh---------------------
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------------- 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------------- 140 (183)
+++.+++.++.+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||+|+++...
T Consensus 114 ~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 193 (216)
T cd04391 114 DQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANI 193 (216)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHHHHhccccCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998421
Q ss_pred hHHHHHHhhhhcCCCC
Q psy9944 141 TTVIVVTYYQVKGPSS 156 (183)
Q Consensus 141 ~~~~~~~~~~~f~~~~ 156 (183)
.+.+++++..+|.-++
T Consensus 194 v~~lI~~~~~if~~p~ 209 (216)
T cd04391 194 MRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHHHHHhHHHHhcCCH
Confidence 1234677888887654
No 10
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-37 Score=241.04 Aligned_cols=152 Identities=26% Similarity=0.390 Sum_probs=135.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.+++|....+.....+|+|++|++||.|||+||+||+|.+.|+.|+.+.+. .+.+
T Consensus 33 ~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~-~~~~ 111 (203)
T cd04386 33 ETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANK-PDED 111 (203)
T ss_pred HcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcc-CCHH
Confidence 579999999999999999999999999987544333345699999999999999999999999999999999887 6778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh-----------------HHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT-----------------TVI 144 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~-----------------~~~ 144 (183)
++...++.++.+||+.|+.+|++|+.||++|++|++.|+|+++|||+||||+|++++... +.+
T Consensus 112 ~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~L 191 (203)
T cd04386 112 ERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELI 191 (203)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999986432 245
Q ss_pred HHHhhhhcCC
Q psy9944 145 VVTYYQVKGP 154 (183)
Q Consensus 145 ~~~~~~~f~~ 154 (183)
+++|..+|..
T Consensus 192 I~~~~~iF~~ 201 (203)
T cd04386 192 ISHADWFFPG 201 (203)
T ss_pred HHhHHHhCCC
Confidence 5777777765
No 11
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-37 Score=239.67 Aligned_cols=151 Identities=32% Similarity=0.498 Sum_probs=134.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..+++++++.+++|.. ..+. +.+|+|++|++||.|||+||+||+|.++|+.|+.+.+. +.+
T Consensus 22 ~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~-~~~~-~~~~~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~--~~~ 97 (206)
T cd04376 22 KHGLQTVGIFRVGSSKKRVRQLREEFDRGID-VVLD-ENHSVHDVAALLKEFFRDMPDPLLPRELYTAFIGTALL--EPD 97 (206)
T ss_pred HcCCCCCceeeCCCCHHHHHHHHHHHhcCCC-CCCc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC--CHH
Confidence 4799999999999999999999999999873 2332 35699999999999999999999999999999998885 477
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcc-----------cCCCCchhhhHhhccccCCCCCh----------
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD-----------RNKMSVENLASIWGPTLMHVENW---------- 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~-----------~nkM~~~nLa~~f~P~L~~~~~~---------- 140 (183)
+++..++.++.+||+.||.+|++|+.||++|+.|++ .||||++|||+||||+|+|++..
T Consensus 98 ~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~ 177 (206)
T cd04376 98 EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHKQKSGEREFVQASL 177 (206)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCCCCCcccccchhhh
Confidence 889999999999999999999999999999999986 79999999999999999999632
Q ss_pred -----------hHHHHHHhhhhcCCCC
Q psy9944 141 -----------TTVIVVTYYQVKGPSS 156 (183)
Q Consensus 141 -----------~~~~~~~~~~~f~~~~ 156 (183)
.+.++++|..+|..++
T Consensus 178 ~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 178 RIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 2456688888888765
No 12
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=3.8e-37 Score=237.81 Aligned_cols=134 Identities=24% Similarity=0.437 Sum_probs=121.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+.. +.++++.++++.... +++.+|+|++|++||+|||+||+||+|.+.|+.|+++++...+.+
T Consensus 28 ~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~--d~~~~dv~~va~~LK~ylReLPePLip~~~y~~fi~~~~~~~~~~ 104 (200)
T cd04388 28 KKGLESSTLYRTQSSSS-LTELRQILDCDAASV--DLEQFDVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSD 104 (200)
T ss_pred HhCCCCCceeeCCCccH-HHHHHHHHhcCCCCC--CcccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHccCCHH
Confidence 48999999999999775 678999999865334 445789999999999999999999999999999999886546788
Q ss_pred HHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944 82 DKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE 138 (183)
Q Consensus 82 ~~~~~l~~ll~--~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~ 138 (183)
+++..++.++. .||+.|+.||+||+.||.+|++|+..|+||++|||+||||+|+|++
T Consensus 105 ~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 105 EYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 89999999997 8999999999999999999999999999999999999999999996
No 13
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=2.4e-37 Score=237.74 Aligned_cols=136 Identities=32% Similarity=0.537 Sum_probs=125.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++.+.... ..+.+|+|++|++||.|||+||+||+|.++|+.|.++.+. .+..
T Consensus 28 ~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~--~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~-~~~~ 104 (186)
T cd04406 28 MHGLYTEGIYRKSGSTNKIKELRQGLDTDANSV--NLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGL-QERR 104 (186)
T ss_pred HhCCCCCceeeCCCcHHHHHHHHHHHccCCCCC--CcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-ccHH
Confidence 479999999999999999999999999875333 3456799999999999999999999999999999999887 6778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+++..++.++.+||+.|+.+|.+++.||.+|+.|++.||||++|||+||||+|+|+++.
T Consensus 105 ~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~~p~~ 163 (186)
T cd04406 105 ETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPDT 163 (186)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccCCCCC
Confidence 88999999999999999999999999999999999999999999999999999998654
No 14
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=4.2e-37 Score=238.94 Aligned_cols=137 Identities=24% Similarity=0.385 Sum_probs=123.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-CCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM-ECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-~~~~ 80 (183)
++|+++|||||++|+..+++++++.+++|.. ..+. ..+|+|++|++||.|||+||+||+|.+.|+.|+.+.+. ..+.
T Consensus 35 ~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~-~~~~-~~~d~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~ 112 (199)
T cd04390 35 EHGLKEEGLFRLPGQANLVKQLQDAFDAGER-PSFD-SDTDVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDE 112 (199)
T ss_pred HcCCCCCCeeeCCCCHHHHHHHHHHHhCCCC-CCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccCccH
Confidence 4799999999999999999999999999873 2232 35699999999999999999999999999999988764 2456
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
..+...++.++.+||+.|+.+|.+|+.||++|+.|++.||||++|||+||||+|+|++..
T Consensus 113 ~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr~~~~ 172 (199)
T cd04390 113 EKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPKVE 172 (199)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCCCCCC
Confidence 778889999999999999999999999999999999999999999999999999999743
No 15
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-37 Score=236.45 Aligned_cols=137 Identities=33% Similarity=0.568 Sum_probs=127.2
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++++. ..++....+|+|++|+++|+|||+||+||+|.++|+.|.++.+. .+..
T Consensus 28 ~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~va~~lK~fLreLPePlip~~~~~~~~~~~~~-~~~~ 105 (185)
T cd04373 28 ATGLETEGIYRVSGNKTHLDSLQKQFDQDH-NLDLVSKDFTVNAVAGALKSFFSELPDPLIPYSMHLELVEAAKI-NDRE 105 (185)
T ss_pred HcCCCCCCeeecCCcHHHHHHHHHHHhcCC-CCCcccccCcHHHHHHHHHHHHhcCCchhccHHHHHHHHHHHhC-CCHH
Confidence 479999999999999999999999999976 34444456799999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+++..++.++.+||+.||.+|.+++.||++|+++++.||||++|||+||||+|+||+..
T Consensus 106 ~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~~~~~~ 164 (185)
T cd04373 106 QRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFT 164 (185)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999998644
No 16
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.5e-37 Score=236.27 Aligned_cols=149 Identities=26% Similarity=0.381 Sum_probs=135.0
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.+++|. ..+ ++.+|+|++|+++|+|||+||+||+|.+.|+.|..+.+. .+.+
T Consensus 28 ~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~-~~~--~~~~~~~~va~~lK~flreLpepLi~~~~~~~~~~~~~~-~~~~ 103 (192)
T cd04402 28 QKGPSTEGIFRRSANAKACKELKEKLNSGV-EVD--LKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQ-ENEE 103 (192)
T ss_pred HhCCCCCCeeeCCCcHHHHHHHHHHHhCCC-CCC--CccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcc-CCHH
Confidence 579999999999999999999999999986 223 357899999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh--------------HHHHHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT--------------TVIVVT 147 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~--------------~~~~~~ 147 (183)
.++..++.++.+||..|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++... +.++++
T Consensus 104 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~~~~~~~~~~~~~~LI~~ 183 (192)
T cd04402 104 EKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNEDLKKVTSLVQFLIEN 183 (192)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998542 245567
Q ss_pred hhhhcCC
Q psy9944 148 YYQVKGP 154 (183)
Q Consensus 148 ~~~~f~~ 154 (183)
+.++|..
T Consensus 184 ~~~IF~~ 190 (192)
T cd04402 184 CQEIFGE 190 (192)
T ss_pred HHHhCCC
Confidence 7777765
No 17
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.4e-37 Score=237.72 Aligned_cols=139 Identities=32% Similarity=0.523 Sum_probs=124.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHH-HhccC---ccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAE-FRQDA---WQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME 77 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~-~~~~~---~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~ 77 (183)
++|+.+|||||++|+..+++++++. ++.+. ...++....+|+|++|++||+|||+||+||+|.++|+.|+.+.+.
T Consensus 41 ~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi~~~~y~~~i~~~~~- 119 (203)
T cd04374 41 TRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLMTYELHNDFINAAKS- 119 (203)
T ss_pred HcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhC-
Confidence 4799999999999999999999875 55541 122333225699999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 78 CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 78 ~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
.+.+.++..++.++.+||+.|+.+|++|+.||++|++|++.|||++.|||+||||+|+|++...
T Consensus 120 ~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~ 183 (203)
T cd04374 120 ENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET 183 (203)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc
Confidence 7888999999999999999999999999999999999999999999999999999999997543
No 18
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-36 Score=233.97 Aligned_cols=138 Identities=48% Similarity=0.841 Sum_probs=128.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++.+.....+.++.+|+|++|+++|.|||+||+||+|.+.|+.|+.+.+. .+.+
T Consensus 28 ~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLreLP~pLi~~~~~~~~~~~~~~-~~~~ 106 (184)
T cd04385 28 QHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSELHAEWIEAAEL-ENKD 106 (184)
T ss_pred HhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence 479999999999999999999999999875444444567899999999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
.++..++.++.+||+.|+.+|.+++.||++|+.|++.|||++.|||+||||+|+++++.
T Consensus 107 ~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll~~~~~ 165 (184)
T cd04385 107 ERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEH 165 (184)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999854
No 19
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.9e-37 Score=236.36 Aligned_cols=135 Identities=27% Similarity=0.382 Sum_probs=124.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.+++|....++ +.+|+|++|++||+|||+||+||+|.+.|+.|+++.+. .+.+
T Consensus 30 ~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~--~~~d~h~vaslLK~fLReLPePLi~~~~y~~~~~~~~~-~~~~ 106 (193)
T cd04382 30 ARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNL--SKVDIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEI-LDED 106 (193)
T ss_pred HcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCccc--ccCCHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHc-CCHH
Confidence 57999999999999999999999999988633333 35599999999999999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
.++..++.++..||+.||.+|.+|+.||++|+. ++.||||+.|||+||||+|++++..
T Consensus 107 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~ 164 (193)
T cd04382 107 NSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVP 164 (193)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCC
Confidence 899999999999999999999999999999999 9999999999999999999998644
No 20
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-36 Score=238.41 Aligned_cols=153 Identities=19% Similarity=0.323 Sum_probs=133.2
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++++.... .+....++|++|++||+|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus 40 ~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~d~~~~~~~~va~lLK~flReLPepLi~~~~y~~~i~~~~~-~~~~ 117 (213)
T cd04397 40 QMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEV-PDLSKENPVQLAALLKKFLRELPDPLLTFKLYRLWISSQKI-EDEE 117 (213)
T ss_pred HcCCCcCCeeeecchHHHHHHHHHHHhcCCCcc-cccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCHH
Confidence 479999999999999999999999999986322 22335699999999999999999999999999999999887 7788
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcc-----cCCCCchhhhHhhccccCCCCChh--------------H
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD-----RNKMSVENLASIWGPTLMHVENWT--------------T 142 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~-----~nkM~~~nLa~~f~P~L~~~~~~~--------------~ 142 (183)
++...++.++..||+.||.+|++|+.||++|+.++. .||||++|||+||||+|++++... +
T Consensus 118 ~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vv~ 197 (213)
T cd04397 118 ERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSKTDNPNTGDEYFLAIEAVN 197 (213)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccccCCCCCCcchHHHHHHHHHHHH
Confidence 899999999999999999999999999999998764 599999999999999999996442 3
Q ss_pred HHHHHhhhhcCCCC
Q psy9944 143 VIVVTYYQVKGPSS 156 (183)
Q Consensus 143 ~~~~~~~~~f~~~~ 156 (183)
.++++|..+|+-+.
T Consensus 198 ~LI~n~~~if~vp~ 211 (213)
T cd04397 198 YLIENNEEFCEVPD 211 (213)
T ss_pred HHHHhHHHHhcCCC
Confidence 55677777776543
No 21
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-36 Score=239.19 Aligned_cols=135 Identities=24% Similarity=0.398 Sum_probs=124.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..++++|++.++.+..... .+.+++|++|++||+|||+||+||+|.++|+.|+++.+. .+.+
T Consensus 33 ~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~--~~~~~~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~-~~~~ 109 (220)
T cd04375 33 NNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVN--YDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQY-VPKE 109 (220)
T ss_pred HhCCCccceeecCCcHHHHHHHHHHHhcCCCccC--cccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCHH
Confidence 4799999999999999999999999998753333 346799999999999999999999999999999998877 6778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN 139 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~ 139 (183)
+++++++.++..||+.||.+|++|+.||++|+.|++.||||++|||+||||+||++..
T Consensus 110 ~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~L~~~~~ 167 (220)
T cd04375 110 QRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSLFHLNT 167 (220)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999853
No 22
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.7e-37 Score=237.18 Aligned_cols=139 Identities=35% Similarity=0.516 Sum_probs=124.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC----
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME---- 77 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~---- 77 (183)
++|+++|||||++|+..+++++++.+++|.+..++ ..+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..
T Consensus 29 ~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~--~~~~~h~va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~ 106 (200)
T cd04408 29 NRALGVQGIYRISGSKARVEKLCQAFENGRDLVDL--SGHSPHDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDS 106 (200)
T ss_pred HcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCc--ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccc
Confidence 47999999999999999999999999998744443 467999999999999999999999999999999876531
Q ss_pred -------CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944 78 -------CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT 142 (183)
Q Consensus 78 -------~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~ 142 (183)
....+++..++.++.+||+.||.+|.+|+.||++|+.+++.|||++.|||+||||+|++++....
T Consensus 107 ~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~ 178 (200)
T cd04408 107 EKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGD 178 (200)
T ss_pred cccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCHhHhhhhhccccCCCCCCCc
Confidence 12457899999999999999999999999999999999999999999999999999999976543
No 23
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.6e-37 Score=236.31 Aligned_cols=137 Identities=31% Similarity=0.544 Sum_probs=124.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCc--CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR--EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA 79 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~--~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~ 79 (183)
++|+ +|||||++|+..+++++++.+|+|.. .++.. ...|+|++|++||.|||+||+||+|.+.|+.|+++.+. .+
T Consensus 31 ~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~-~~~~~~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~-~~ 107 (195)
T cd04384 31 KHGI-VDGIYRLSGIASNIQRLRHEFDSEQI-PDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSA-AS 107 (195)
T ss_pred HcCC-CcCeeeCCCCHHHHHHHHHHHcCCCC-CCcccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CC
Confidence 4688 69999999999999999999999863 23321 23599999999999999999999999999999999887 78
Q ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
.++++..++.++.+||+.|+.+|++|+.||++|+.+++.||||++|||+||||+|+++++..
T Consensus 108 ~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L~~~~~~~ 169 (195)
T cd04384 108 DEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIE 169 (195)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhhhhhcCCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999997543
No 24
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-36 Score=237.47 Aligned_cols=140 Identities=30% Similarity=0.469 Sum_probs=123.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC--C
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME--C 78 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~--~ 78 (183)
++|+.+|||||++|+..+++.+++.++++....++..+.+ |+|++|++||+|||+||+||+|.++|+.|+++.+.. .
T Consensus 31 ~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~ 110 (207)
T cd04379 31 RRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPN 110 (207)
T ss_pred HcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChh
Confidence 4799999999999999999999999999764445544443 899999999999999999999999999999987651 2
Q ss_pred CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
+...+...++.++.+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||+|+++++..
T Consensus 111 ~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~~ 173 (207)
T cd04379 111 DVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQEF 173 (207)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCccc
Confidence 334456778899999999999999999999999999999999999999999999999997544
No 25
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.5e-36 Score=234.02 Aligned_cols=138 Identities=32% Similarity=0.540 Sum_probs=126.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..+++++++.+++|.+..+.. .+..|+|++|++||+|||+||+||+|.+.|+.|+.+.+. .+.
T Consensus 31 ~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pli~~~~~~~~i~~~~~-~~~ 109 (196)
T cd04395 31 ARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRI-EDP 109 (196)
T ss_pred HcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC-CCH
Confidence 579999999999999999999999999997543332 234599999999999999999999999999999998877 778
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
.+++..++.++.+||+.|+.+|.+++.||++|+.|++.|+|+++|||+||||+|+|+++.
T Consensus 110 ~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r~~~~ 169 (196)
T cd04395 110 VERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDD 169 (196)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999754
No 26
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-36 Score=234.85 Aligned_cols=133 Identities=32% Similarity=0.457 Sum_probs=122.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
.+|+.+|||||++|+..+++++++.+++|... ...+++|++|++||.|||+||+||+|.+.|+.|.++.+. .+.+
T Consensus 32 ~~~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~----~~~~~~~~vaslLK~flReLPePLi~~~~~~~~~~~~~~-~~~~ 106 (202)
T cd04394 32 LDHLSTEGLFRKSGSVVRQKELKAKLEGGEAC----LSSALPCDVAGLLKQFFRELPEPLLPYDLHEALLKAQEL-PTDE 106 (202)
T ss_pred HHCCCCCCeeeCCCCHHHHHHHHHHHcCCCCC----ccccCHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHhc-CCHH
Confidence 35789999999999999999999999998732 125689999999999999999999999999999998877 6677
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN 139 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~ 139 (183)
++..+++.++.+||+.|+.+|.||+.||++|++|++.||||++|||+||||+|+++++
T Consensus 107 ~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~~~~ 164 (202)
T cd04394 107 ERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEE 164 (202)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeecCCC
Confidence 8888999999999999999999999999999999999999999999999999999964
No 27
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.2e-36 Score=232.11 Aligned_cols=138 Identities=41% Similarity=0.587 Sum_probs=125.6
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccC---CcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQL---SREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC 78 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~---~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~ 78 (183)
++|+++|||||++|+..+++++++.++++....+. .....|+|++|++||+|||+||+||+|.+.|+.|+++.+. .
T Consensus 29 ~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~-~ 107 (192)
T cd04398 29 NFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKI-E 107 (192)
T ss_pred HhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-C
Confidence 47999999999999999999999999998633222 1124599999999999999999999999999999999887 7
Q ss_pred CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+...++..++.++.+||+.|+.+|.+++.||++|+.+++.|+||++|||+||||+|++++..
T Consensus 108 ~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~l~~~~~~ 169 (192)
T cd04398 108 DESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMNAAPD 169 (192)
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHHhhhhCCCCcc
Confidence 88889999999999999999999999999999999999999999999999999999999753
No 28
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=4.8e-36 Score=233.60 Aligned_cols=137 Identities=34% Similarity=0.506 Sum_probs=123.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC----
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME---- 77 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~---- 77 (183)
++|+.+|||||++|+..+++++++.+++|....+ ...+|+|++|++||+|||+||+||+|.+.|+.|+.+.+..
T Consensus 29 ~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~--~~~~~~h~va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~ 106 (203)
T cd04378 29 NRALGVQGIYRVSGSKARVEKLCQAFENGKDLVE--LSELSPHDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDT 106 (203)
T ss_pred hcCCCCccceeCCCcHHHHHHHHHHHhcCCCccc--cccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccc
Confidence 5799999999999999999999999999864333 3467999999999999999999999999999999887531
Q ss_pred ---------CCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 78 ---------CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 78 ---------~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
.+...++..++.++.+||+.|+.+|.+|+.||++|++|++.|||+++|||+||||+|+|++..
T Consensus 107 e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLaivf~P~Ll~~~~~ 178 (203)
T cd04378 107 EEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPG 178 (203)
T ss_pred cccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhhhhhccccCCCCCC
Confidence 123567889999999999999999999999999999999999999999999999999999865
No 29
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5e-36 Score=236.74 Aligned_cols=139 Identities=26% Similarity=0.464 Sum_probs=124.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCc-cccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc----
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAW-QVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM---- 76 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~-~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~---- 76 (183)
++|+++|||||++|+..+++++++.++++.. ...+.++.+|+|++|++||+|||+||+||+|.++|+.|.++...
T Consensus 45 ~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i 124 (225)
T cd04396 45 ENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRI 124 (225)
T ss_pred HCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcCCccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchh
Confidence 5799999999999999999999999998742 23344567899999999999999999999999999999876543
Q ss_pred ------------CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 77 ------------ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 77 ------------~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
..+..+++..++.++.+||+.||.+|.+|+.||++|++|++.||||++|||+||||+|+++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~ 200 (225)
T cd04396 125 LQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH 200 (225)
T ss_pred hhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc
Confidence 1456788999999999999999999999999999999999999999999999999999988643
No 30
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=8e-36 Score=229.47 Aligned_cols=136 Identities=31% Similarity=0.520 Sum_probs=126.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..+++++++.++++.... ..+.+|+|++|++||+|||+||+||+|.+.|+.|..+.+. .+..
T Consensus 28 ~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~--~~~~~~~~~va~~LK~flr~LpepLi~~~~~~~~~~~~~~-~~~~ 104 (186)
T cd04377 28 MHGLYTEGIYRKSGSANKIKELRQGLDTDPDSV--NLEDYPIHVITSVLKQWLRELPEPLMTFELYENFLRAMEL-EEKQ 104 (186)
T ss_pred HcCCCCCceeeCCCCHHHHHHHHHHHhCCCccc--CcccCCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHhc-CCHH
Confidence 479999999999999999999999999985333 3457799999999999999999999999999999998887 7788
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+++..++.++.+||+.|+.+|.+++.||++|+.|++.|||+++|||+||||+|+|+++.
T Consensus 105 ~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~~~~~ 163 (186)
T cd04377 105 ERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILRCPDT 163 (186)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999998754
No 31
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.5e-36 Score=233.99 Aligned_cols=137 Identities=33% Similarity=0.454 Sum_probs=120.6
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC--C
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC--A 79 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~--~ 79 (183)
++|+.+|||||++|+..+++++++.+++|.... ..+.+|+|++|++||.|||+||+||+|.++|+.|+.+.+... +
T Consensus 29 ~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~--~~~~~~~h~va~~LK~fLReLPePLi~~~~~~~~~~~~~~~~~~~ 106 (211)
T cd04409 29 SRALCLKGIYRVNGAKSRVEKLCQAFENGKDLV--ELSELSPHDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVN 106 (211)
T ss_pred HcCCCCCCeeECCCcHHHHHHHHHHHHcCCCcc--ccccCCHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHhhcccc
Confidence 579999999999999999999999999987433 334679999999999999999999999999999998764210 0
Q ss_pred -------------------HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 80 -------------------TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 80 -------------------~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
...++..++.++.+||+.||.+|++|+.||++|++|++.||||++|||+||||+|+||+..
T Consensus 107 e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~ 186 (211)
T cd04409 107 ETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPT 186 (211)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccccCCCChHHhhhhccccccCCCCC
Confidence 0134578999999999999999999999999999999999999999999999999999744
No 32
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-35 Score=228.11 Aligned_cols=146 Identities=29% Similarity=0.488 Sum_probs=129.5
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..+++++++.+++|. ..+ .+.+ |+|++|++||+|||+||+||+|.+.|+.+..+.+. +.
T Consensus 36 ~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~-~~~--~~~~~d~~~va~~LK~~lr~Lp~pLi~~~~~~~l~~~~~~--~~ 110 (195)
T cd04404 36 AHALTTEGIFRRSANTQVVKEVQQKYNMGE-PVD--FDQYEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNV--DK 110 (195)
T ss_pred HcCCCCCCeeeCCCcHHHHHHHHHHHhCCC-CCC--cccccCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcC--CH
Confidence 479999999999999999999999999986 223 2344 99999999999999999999999999999998775 47
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------hHHHHHH
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW-------------TTVIVVT 147 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~-------------~~~~~~~ 147 (183)
..+...++.++.+||+.|+.+|.+|+.||++|+.|++.|+|+++|||+||||+|+|+++. .+.++++
T Consensus 111 ~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~l~~~~~~~~~~~~LI~~ 190 (195)
T cd04404 111 EERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSLSAINPINTFTKFLLDH 190 (195)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999999999999999999999999999999633 2345566
Q ss_pred hhhhc
Q psy9944 148 YYQVK 152 (183)
Q Consensus 148 ~~~~f 152 (183)
|+++|
T Consensus 191 ~~~iF 195 (195)
T cd04404 191 QDEIF 195 (195)
T ss_pred HHhhC
Confidence 66665
No 33
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=4.9e-35 Score=225.63 Aligned_cols=138 Identities=26% Similarity=0.456 Sum_probs=125.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.+++|. ..++. ..+|+|++|++||+|||+||+||+|.+.|+.++.+.+...+.+
T Consensus 33 ~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~-~~~~~-~~~d~~~va~~lK~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~ 110 (189)
T cd04393 33 QHGLEQEGLFRVNGNAETVEWLRQRLDSGE-EVDLS-KEADVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGED 110 (189)
T ss_pred HcCCCCCCeeeCCCCHHHHHHHHHHHcCCC-CCCcc-ccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHccChH
Confidence 479999999999999999999999999986 33333 2479999999999999999999999999999999877644677
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
++...++.++.+||+.|+.+|.+++.||++|++|++.|+||+.|||+||||+||+.+...
T Consensus 111 ~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~~~~~~ 170 (189)
T cd04393 111 EFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFHVYTDV 170 (189)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeCCCCCc
Confidence 888999999999999999999999999999999999999999999999999999887543
No 34
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-34 Score=221.46 Aligned_cols=132 Identities=24% Similarity=0.344 Sum_probs=115.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
.+|+.+|||||++|+..+++++++.+++|... . ....|+|++|++||+|||+||+||+|.+.|+.+++....
T Consensus 35 ~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~--~-~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~~----- 106 (187)
T cd04389 35 LGGFQTEGIFRVPGDIDEVNELKLRVDQWDYP--L-SGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASED----- 106 (187)
T ss_pred cCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCC--c-cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcC-----
Confidence 47999999999999999999999999998732 1 234599999999999999999999999999999876542
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhc--ccCCCCchhhhHhhccccCCCCChhHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK--DRNKMSVENLASIWGPTLMHVENWTTV 143 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~--~~nkM~~~nLa~~f~P~L~~~~~~~~~ 143 (183)
...++.++.+||+.||.+|.||+.||++|++++ +.||||++|||+||||+|++++..+..
T Consensus 107 --~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~~~~~~~ 168 (187)
T cd04389 107 --PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRCTSDDPR 168 (187)
T ss_pred --HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCCCCCCHH
Confidence 235678899999999999999999999999754 789999999999999999998755543
No 35
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=100.00 E-value=5.7e-33 Score=211.03 Aligned_cols=139 Identities=36% Similarity=0.570 Sum_probs=128.5
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+++|||||++|+..+++++++.++++... +...+.+|+|++|+++|.|||+||+||++.+.|+.+.++.+. .+..
T Consensus 16 ~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~-~~~~ 93 (174)
T smart00324 16 KRGLDTEGIYRVSGSKSRVKELREAFDSGPDP-DLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAKV-EDET 93 (174)
T ss_pred HcCCCccceeecCCcHHHHHHHHHHHhCCCCC-CcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence 47999999999999999999999999998732 223457899999999999999999999999999999998886 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT 142 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~ 142 (183)
++...++.++.+||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|+++++...
T Consensus 94 ~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~ 154 (174)
T smart00324 94 ERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV 154 (174)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH
Confidence 9999999999999999999999999999999999999999999999999999999986654
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8e-33 Score=216.56 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=124.5
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccC--CcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc-----CCCH
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQL--SREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM-----ECAT 80 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~--~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-----~~~~ 80 (183)
+||||++|+..++++|++.+++|...... ..+.+|+|++|++||.|||+||+||+|.++|+.|.++... ..+.
T Consensus 41 ~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~ 120 (212)
T cd04399 41 RNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSD 120 (212)
T ss_pred eeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCH
Confidence 39999999999999999999998633221 1446799999999999999999999999999999876532 1467
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccC---CCCchhhhHhhccccCCCCCh-------------hHHH
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN---KMSVENLASIWGPTLMHVENW-------------TTVI 144 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~n---kM~~~nLa~~f~P~L~~~~~~-------------~~~~ 144 (183)
++++..++.++.+||+.|+.+|++|+.||.+|++++..| ||++.|||+||||+|+||... ...+
T Consensus 121 ~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~~~~~~~~~~~~~e~L 200 (212)
T cd04399 121 TARIQGLQSTLSQLPKSHIATLDAIITHFYRLIEITKMGESEEEYADKLATSLSREILRPIIESLLTIGDKHGYKFFRDL 200 (212)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHhhhhhcCCCcccccccccHHHHHHHHHH
Confidence 899999999999999999999999999999999987666 699999999999999999633 2345
Q ss_pred HHHhhhhcCC
Q psy9944 145 VVTYYQVKGP 154 (183)
Q Consensus 145 ~~~~~~~f~~ 154 (183)
+++|+.+|++
T Consensus 201 i~~~~~iF~~ 210 (212)
T cd04399 201 LTHKDQIFSE 210 (212)
T ss_pred HHhHHHhccc
Confidence 5666666654
No 37
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=100.00 E-value=7.5e-32 Score=203.18 Aligned_cols=137 Identities=31% Similarity=0.503 Sum_probs=127.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.++||||++|+..+++++++.++.+.... ..+.+|+|++|+++|.|||+||+||++.+.|+.++.+.+. .+..
T Consensus 13 ~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~--~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~-~~~~ 89 (169)
T cd00159 13 KNGLNTEGIFRVSGSASKIEELKKKFDRGEDID--DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKI-EDEE 89 (169)
T ss_pred HcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc--cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHc-CCHH
Confidence 379999999999999999999999999987432 3346799999999999999999999999999999999987 6888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
.++..++.++..||+.|+.+|.+++.||++|+.+++.|+|+++|||+||||+|++++...
T Consensus 90 ~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 90 ERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999998653
No 38
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=100.00 E-value=9.5e-33 Score=205.02 Aligned_cols=137 Identities=34% Similarity=0.543 Sum_probs=124.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.++||||++|+..+++++++.++.+..... ..+.+|+|++|++||.||++||+||++.+.|+.+.++.+. .+..
T Consensus 13 ~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~-~~~~ 90 (151)
T PF00620_consen 13 KKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE-NLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKS-ADEE 90 (151)
T ss_dssp HHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST-TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTS-SSHH
T ss_pred HhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc-cccccChhhccccceeeeeccccchhhhhHHHHHhhhhcc-chhh
Confidence 4789999999999999999999999999974322 5567899999999999999999999999999999987777 8899
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
++++.++.++.+||+.|+.+|.+++.||++|..+++.|+||++|||+||||+|+++++.
T Consensus 91 ~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~ 149 (151)
T PF00620_consen 91 EQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS 149 (151)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred HHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999998753
No 39
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=2.3e-31 Score=209.65 Aligned_cols=130 Identities=18% Similarity=0.299 Sum_probs=116.2
Q ss_pred CCCCCCCCccccCCCHHH----HHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944 2 SEGSMSEGIYRRSGSTTN----VSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME 77 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~----v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~ 77 (183)
++|+.+|||||++|+... ++++++.+|+|.... ...|+|++|++||.|||+||+||+|.++|+.+..+...
T Consensus 63 ~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~----~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~- 137 (220)
T cd04380 63 TRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN----SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN- 137 (220)
T ss_pred HcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-
Confidence 469999999999999999 999999999986322 35699999999999999999999999999999988632
Q ss_pred CCHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 78 CATEDKVHIYRSLLE-KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 78 ~~~~~~~~~l~~ll~-~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
+ ....+.++. .||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|+|++...
T Consensus 138 -~----~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~ 197 (220)
T cd04380 138 -N----EEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRA 197 (220)
T ss_pred -c----HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence 2 234677888 9999999999999999999999999999999999999999999997553
No 40
>KOG4269|consensus
Probab=99.97 E-value=7.5e-31 Score=231.10 Aligned_cols=154 Identities=27% Similarity=0.410 Sum_probs=142.6
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhcc-CccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQD-AWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~-~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|..+.|+.|++.||.+ ..+.....+..|||+|||+||+|||+||+||++.++|..|...... .++
T Consensus 933 ~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~-~np 1011 (1112)
T KOG4269|consen 933 CRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIAL-SNP 1011 (1112)
T ss_pred ccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccC-CCH
Confidence 58999999999999999999999999998 4333333456799999999999999999999999999999999988 688
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHHHHHHhhhhcCCCC
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSS 156 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~~~ 156 (183)
....-.+..+|.+||++|..++.+|+.||++|++++.+|||++.||++||||+|.+|.+....++-+|+++|..-.
T Consensus 1012 va~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPTLniPse~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1012 VAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPTLNIPSEIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred HHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeecccccCcHHhhhhhccchhhhhccch
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999998754
No 41
>KOG4270|consensus
Probab=99.96 E-value=2.3e-29 Score=217.80 Aligned_cols=136 Identities=31% Similarity=0.488 Sum_probs=126.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
+.|++.|||||+.|...+++.+|+.+|.|.....+ ..|||++|++||.|||+||+|++++++|+.|..+... .+.+
T Consensus 180 e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~---~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~-~~e~ 255 (577)
T KOG4270|consen 180 EGGLKEEGLFRINGEASKVERLREALDCGVVPDQL---YIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNC-ENED 255 (577)
T ss_pred hcCccccceeccCCCchHHHHHHHHHcCCcccccc---cCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhc-cCHH
Confidence 57999999999999999999999999998633222 4699999999999999999999999999999988888 8899
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
++.+.++.++.+||+.|+..|.|++.||..|++++..||||+.|||+||||+++++.+..
T Consensus 256 ~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~ 315 (577)
T KOG4270|consen 256 EKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPL 315 (577)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChH
Confidence 999999999999999999999999999999999999999999999999999999997543
No 42
>KOG2200|consensus
Probab=99.96 E-value=1.9e-29 Score=214.89 Aligned_cols=135 Identities=23% Similarity=0.451 Sum_probs=128.2
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|++++||||++|.+.+|+.|+..++..-+...+.|+....|++|.+||+|+|+||+||+|.++.+.|..+... ....
T Consensus 329 ~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~-~pkk 407 (674)
T KOG2200|consen 329 ERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQL-VPKK 407 (674)
T ss_pred HhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHHHhc-CcHH
Confidence 579999999999999999999999998876555677888899999999999999999999999999999999998 7799
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHV 137 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~ 137 (183)
.++++++.++..||.+||++|+.|+.||++|+.+++.|+||+.|||+||||+||..
T Consensus 408 qrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~NlsvcmAPsLF~l 463 (674)
T KOG2200|consen 408 QRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVCMAPSLFHL 463 (674)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhhhcchHHhh
Confidence 99999999999999999999999999999999999999999999999999999976
No 43
>KOG4407|consensus
Probab=99.96 E-value=3.2e-29 Score=226.51 Aligned_cols=152 Identities=30% Similarity=0.447 Sum_probs=136.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCC-----cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLS-----REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM 76 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~-----~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~ 76 (183)
.+||.+.||||+|||.+-|..|++.++++++..+.. |+ |+++|.++||.|||.|||||++.++|..|+++.+.
T Consensus 1187 t~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWr--DvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnrk 1264 (1973)
T KOG4407|consen 1187 TYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWR--DVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANRK 1264 (1973)
T ss_pred hcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchh--hhHHHHHHHHHHHHhCCcccccccchhhhhhhccc
Confidence 379999999999999999999999999997543332 33 89999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChhH--------------
Q psy9944 77 ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTT-------------- 142 (183)
Q Consensus 77 ~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~-------------- 142 (183)
.+.-+|+..++.++.+||.++|+||++|+.||.+|..|+++|||-..|||++|||+|+|+++++-
T Consensus 1265 -~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dnm~tmVthM~dQckIV 1343 (1973)
T KOG4407|consen 1265 -STHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDNMATMVTHMSDQCKIV 1343 (1973)
T ss_pred -ccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCccHHHHhhcchhhhhHH
Confidence 78889999999999999999999999999999999999999999999999999999999987753
Q ss_pred HHHHHhhhhcCCCC
Q psy9944 143 VIVVTYYQVKGPSS 156 (183)
Q Consensus 143 ~~~~~~~~~f~~~~ 156 (183)
..+++|+++|...+
T Consensus 1344 EtLI~~~dwfF~es 1357 (1973)
T KOG4407|consen 1344 ETLIHYNDWFFDES 1357 (1973)
T ss_pred HHHHhhhhheeccC
Confidence 23367777766543
No 44
>KOG1451|consensus
Probab=99.95 E-value=4.8e-27 Score=200.17 Aligned_cols=153 Identities=27% Similarity=0.424 Sum_probs=136.3
Q ss_pred CCCCCCCccccCCCHHHHHHHHHHHhccCcc--ccCC-cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944 3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQ--VQLS-REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA 79 (183)
Q Consensus 3 ~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~--~~~~-~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~ 79 (183)
+|++++|+||..|...+|++|....-.-+.. .+.+ .+.||+-++.+.||.|||.||+||.+++++..|+.+++. .+
T Consensus 402 ~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKs-dn 480 (812)
T KOG1451|consen 402 SGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKS-DN 480 (812)
T ss_pred cCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc-cc
Confidence 6999999999999999999987776543322 2222 246789999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHH
Q psy9944 80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIV 145 (183)
Q Consensus 80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~ 145 (183)
.+.|+.+++.++.+||..||..|..|+.||.+|+.|+..|.||+.||++||||+|+|+++. .++++
T Consensus 481 q~yRv~aIHsLVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEETVAAiMdIKFQNIVVEILI 560 (812)
T KOG1451|consen 481 QTYRVDAIHSLVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEETVAAIMDIKFQNIVVEILI 560 (812)
T ss_pred hhhhHHHHHHHHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHHHHHHHHcchhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999633 46788
Q ss_pred HHhhhhcCCCC
Q psy9944 146 VTYYQVKGPSS 156 (183)
Q Consensus 146 ~~~~~~f~~~~ 156 (183)
+||.-+|...+
T Consensus 561 EnyeKIF~t~P 571 (812)
T KOG1451|consen 561 ENYEKIFKTKP 571 (812)
T ss_pred hhhHHHhcCCC
Confidence 99999987654
No 45
>KOG1450|consensus
Probab=99.94 E-value=1.7e-26 Score=200.97 Aligned_cols=137 Identities=34% Similarity=0.493 Sum_probs=123.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCc-CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~-~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
+.|++++||||++|+...|++|+.+++... ..++.. ...|+|.|+++||.|+|+||+||++..++..|..+... .+.
T Consensus 485 ~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~-~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~-~~~ 562 (650)
T KOG1450|consen 485 KFGLDSDGIYRVSGNLASVNKLREQSDQDN-SLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQG-ELS 562 (650)
T ss_pred hhcccCCceeeecchHHHHHHHHHhcCccc-cccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcc-cch
Confidence 479999999999999999999999999543 122211 11389999999999999999999999999999999998 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
..+......++..||..|+.|+++|+.||++|..|+++|||+.+|||+||||+|+++...
T Consensus 563 ~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~ 622 (650)
T KOG1450|consen 563 HTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE 622 (650)
T ss_pred hhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceEEEecccccccccc
Confidence 899999999999999999999999999999999999999999999999999999997533
No 46
>KOG3564|consensus
Probab=99.94 E-value=5.5e-26 Score=189.93 Aligned_cols=132 Identities=30% Similarity=0.410 Sum_probs=123.0
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.++||||++|...++++|++.+-.++... .....|+|++|+++|.|||+|.+||||......|..++.. .|++
T Consensus 375 aRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p--~~g~~Dihvic~~lKdFLR~LkePLip~~~~rdf~eAa~~-tD~d 451 (604)
T KOG3564|consen 375 ARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTP--HLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRDFMEAAEI-TDED 451 (604)
T ss_pred HccccccceeeccccHHHHHHHHHHHhccCCCC--ccCCcchhHHHHHHHHHHHhcccccccchHHHHHHHHhcC-CCch
Confidence 589999999999999999999999999998533 3345699999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHV 137 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~ 137 (183)
....++...+..||+.||.||.|||-|+++|++ ++.+||+.+|||.+|||+++.-
T Consensus 452 n~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh 506 (604)
T KOG3564|consen 452 NSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGH 506 (604)
T ss_pred hHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhcc
Confidence 999999999999999999999999999999888 7889999999999999999984
No 47
>KOG2710|consensus
Probab=99.93 E-value=5.9e-26 Score=189.97 Aligned_cols=135 Identities=33% Similarity=0.502 Sum_probs=125.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCcc--ccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQ--VQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA 79 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~--~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~ 79 (183)
++|+++.||||+.|+..++++|++.++++.+- ....|+++++|++|++||+|||+||+||+|.++|+.|+..++. ..
T Consensus 107 ~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl-~~ 185 (412)
T KOG2710|consen 107 KNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKL-EP 185 (412)
T ss_pred HcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcC-Cc
Confidence 58999999999999999999999999998421 3445778899999999999999999999999999999999997 55
Q ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccC-----------CCCchhhhHhhccccCCC
Q psy9944 80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN-----------KMSVENLASIWGPTLMHV 137 (183)
Q Consensus 80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~n-----------kM~~~nLa~~f~P~L~~~ 137 (183)
.++++..++.++..||+.|+++|.+++.||+.++.|+..| +|+..|||+||+|+++..
T Consensus 186 e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k 254 (412)
T KOG2710|consen 186 ETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYK 254 (412)
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhhhhcchhhhc
Confidence 5599999999999999999999999999999999999998 999999999999999994
No 48
>KOG1117|consensus
Probab=99.91 E-value=1.3e-24 Score=191.50 Aligned_cols=154 Identities=34% Similarity=0.553 Sum_probs=138.9
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|...++..|.+.+.++.-...+.....-+.+|+++||+|||+|++||+|.++|..|++++.. .+.+
T Consensus 740 qyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~-~d~~ 818 (1186)
T KOG1117|consen 740 QYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAET-QDDK 818 (1186)
T ss_pred HhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhc-cchH
Confidence 579999999999999999999999999887556666666689999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC-------ChhHHHHHHhhhhcCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE-------NWTTVIVVTYYQVKGP 154 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~-------~~~~~~~~~~~~~f~~ 154 (183)
+++.....+|..||..||.||+.|+.||.+|..+++.|+|+.+|||.+|||+||-.. +...-++.+|..+|.-
T Consensus 819 Er~~rY~~lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqdehevnVledLingYvvVF~v 898 (1186)
T KOG1117|consen 819 ERIKRYGALIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQDEHEVNVLEDLINGYVVVFEV 898 (1186)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCCchhhhhHHHHHhcCceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999874 2234556777777776
Q ss_pred CC
Q psy9944 155 SS 156 (183)
Q Consensus 155 ~~ 156 (183)
+.
T Consensus 899 ~e 900 (1186)
T KOG1117|consen 899 DE 900 (1186)
T ss_pred cH
Confidence 54
No 49
>KOG4406|consensus
Probab=99.91 E-value=2.8e-24 Score=177.60 Aligned_cols=155 Identities=26% Similarity=0.444 Sum_probs=137.4
Q ss_pred CC-CCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 3 EG-SMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 3 ~g-l~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
.| +++||+||.+++...+.++.+.+++|. .+++. .+ |+|..|.++|.|+|+||+||++.++|..+..... .+.
T Consensus 285 ~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~-pVdle--~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~--~~~ 359 (467)
T KOG4406|consen 285 HGKLTTEGLFRRSASRSPIREVQELYNTGE-PVDLE--VYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN--VDK 359 (467)
T ss_pred cceecccceeccccCccchHHHHHHhcCCC-cccHH--HhccchhhHHHHHHHHhcCCcccchhhhhhhhhcccc--chH
Confidence 56 899999999999999999999999997 44443 55 5999999999999999999999999999887777 477
Q ss_pred HHHHHHHHHHHHh-hChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC-------------ChhHHHHH
Q psy9944 81 EDKVHIYRSLLEK-LHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE-------------NWTTVIVV 146 (183)
Q Consensus 81 ~~~~~~l~~ll~~-Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~-------------~~~~~~~~ 146 (183)
..+...+++++.. ||++|+.++++++.|+.+|.+|+..|+||+.|||.||||+|+.++ .....+++
T Consensus 360 ~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~ 439 (467)
T KOG4406|consen 360 SLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIE 439 (467)
T ss_pred HhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHHHhccHHHHHHHHHH
Confidence 8899999999977 999999999999999999999999999999999999999999995 23457788
Q ss_pred HhhhhcCCCCCCCCcc
Q psy9944 147 TYYQVKGPSSPIPAVG 162 (183)
Q Consensus 147 ~~~~~f~~~~~~~~~~ 162 (183)
+|..+|..+.+..+.+
T Consensus 440 ~~~~~f~~~~~~~~~s 455 (467)
T KOG4406|consen 440 HYKKLFTTPENADKFS 455 (467)
T ss_pred hhhhccCCCCCccccC
Confidence 9999998887666554
No 50
>KOG1453|consensus
Probab=99.90 E-value=9.7e-24 Score=194.07 Aligned_cols=136 Identities=33% Similarity=0.501 Sum_probs=123.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
.+|+.+|||||++|...+++.|...++.+.....+ ...|+|++++++|+|||+||+||+++..|+.|+.+.+. ....
T Consensus 631 ~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l--~~~dih~vtsVlK~yLr~Lp~pIi~f~~y~~~~~~~~~-~~~~ 707 (918)
T KOG1453|consen 631 AHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLL--STPDIHAVTSVLKLYLRKLPEPIIIFNLYDEFLSAAKL-PEKD 707 (918)
T ss_pred HhhhhccceeeccccHHHHHHHHHHhcCCccceec--CCCChHHHHHHHHHHHHhccccccccchHHHHHhhhcc-cccc
Confidence 47999999999999999999999999998733443 46699999999999999999999999999999999987 3333
Q ss_pred ------HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 ------DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ------~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+.+..+..++..||+.|+.+|.+|+.||.+|+.++..|+|+.+|||++|||+|+|+++.
T Consensus 708 ~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaivF~Ptllr~~d~ 772 (918)
T KOG1453|consen 708 EPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIVFAPTLLRPPDG 772 (918)
T ss_pred ccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccccccCcccCCCCC
Confidence 48899999999999999999999999999999999999999999999999999999643
No 51
>KOG1452|consensus
Probab=99.80 E-value=1.8e-19 Score=144.89 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=130.2
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc--CC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM--EC 78 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~--~~ 78 (183)
++|++.-|+|+++|+.++.+-|++.|+.+.-.+.+..+.. |.+.+++++|.||||||||+++...++...+++.. +.
T Consensus 213 kRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~ 292 (442)
T KOG1452|consen 213 KRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDSKDELRELPEPLVTGQDFEMDFDAASVALPF 292 (442)
T ss_pred hcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecccHhHHHhCCCccccchhhhhhhhhhhhcCCC
Confidence 5899999999999999999999999998875566655555 78899999999999999999999999988887765 45
Q ss_pred CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC---------ChhHHHHHHhh
Q psy9944 79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE---------NWTTVIVVTYY 149 (183)
Q Consensus 79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~---------~~~~~~~~~~~ 149 (183)
|.....+.+-.++.+|+..++.+|-.++.||.-|..+++.|+||+..||.+|||.||-.. +..++..+.-+
T Consensus 293 dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~L~~~~~t~sP~t~~~~sk~~AV~~~ 372 (442)
T KOG1452|consen 293 DPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPLLFFCLDTFSPYTISPTSKMAAVRTL 372 (442)
T ss_pred CccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhhHHHhhcccCCCccCCcchhHHHHHh
Confidence 666777888899999999999999999999999999999999999999999999997552 33344445555
Q ss_pred hhcCCC
Q psy9944 150 QVKGPS 155 (183)
Q Consensus 150 ~~f~~~ 155 (183)
.+-.++
T Consensus 373 ~i~~~~ 378 (442)
T KOG1452|consen 373 DINQAS 378 (442)
T ss_pred hhhccC
Confidence 554444
No 52
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.74 E-value=2.2e-17 Score=127.20 Aligned_cols=136 Identities=21% Similarity=0.178 Sum_probs=112.6
Q ss_pred CCCCCCCCc---cccCCCHHHHHHH-HHHHhccCccccCCc------CCcCHHHHHHHHHHHHhhCCCCCCCH-HhHHHH
Q psy9944 2 SEGSMSEGI---YRRSGSTTNVSKL-LAEFRQDAWQVQLSR------EQYTEHDVSTVLKRFFRDLPEPLLST-ELHVHL 70 (183)
Q Consensus 2 ~~gl~~eGi---FR~~g~~~~v~~l-~~~~~~~~~~~~~~~------~~~d~~~va~~lK~fLr~Lp~pLi~~-~~~~~~ 70 (183)
++|+.+++| ||..++...++.+ +..++.++....... ...|+|+++++||-++++||.++++. +.|..|
T Consensus 19 ~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~~F 98 (198)
T cd04401 19 SRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYEEF 98 (198)
T ss_pred hcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHHHH
Confidence 479999999 9999999998887 666665532221111 23599999999999999999999999 999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 71 CNAAGMECATEDKVHIYRSLLEKL--HPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~ll~~L--p~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
...-+. .+ ....+++.++..+ |+.|..++..++.+|..|+.|+..|+|+..+|+.+|||.+|..+..
T Consensus 99 ~~~E~~-~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~ 167 (198)
T cd04401 99 KARERR-SN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG 167 (198)
T ss_pred HHHHHh-cC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence 986543 11 2234888888777 7889999999999999999999999999999999999999998754
No 53
>KOG4271|consensus
Probab=99.71 E-value=4.9e-18 Score=151.32 Aligned_cols=131 Identities=33% Similarity=0.448 Sum_probs=121.2
Q ss_pred CCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHH
Q psy9944 3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATED 82 (183)
Q Consensus 3 ~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~ 82 (183)
.|+.+||+||++|++++...++++|.+.. ..++...+..++++|+.+|.|+..||+|++++.....+.++.+. .|...
T Consensus 946 tg~~te~lyrv~gnkT~~eelrkqf~n~~-~~dl~s~d~~v~~vagAlksffa~Lpeplipys~h~~~~e~~kI-~D~~r 1023 (1100)
T KOG4271|consen 946 TGLSTEGLYRVSGNKTDLEELRKQFLNDH-NFDLSSMDTTVNVVAGALKSFFACLPEPLIPYSYHPRLKEAMKI-SDRGR 1023 (1100)
T ss_pred ccchhhhheecCCCCccHHHHHHHHHhhc-cccccccccccccccCcchhhhhhCCCcccCccCCcchhhhhhc-ccchh
Confidence 58899999999999999999999999854 34454445579999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccC
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLM 135 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~ 135 (183)
+...++.++..+|+.|+.+++|++.||.+|.....+|.||.+||++||+|.|.
T Consensus 1024 klhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~~~~ 1076 (1100)
T KOG4271|consen 1024 KLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPTLLM 1076 (1100)
T ss_pred hccchhhHhhhcCchHHHHHHHHHHHHhhhcccccccccccccccccccchHH
Confidence 99999999999999999999999999999999999999999999999999887
No 54
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.69 E-value=4.5e-16 Score=121.43 Aligned_cols=147 Identities=13% Similarity=0.172 Sum_probs=120.7
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccc--cCCcCCcC--------HHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQV--QLSREQYT--------EHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM 76 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~--~~~~~~~d--------~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~ 76 (183)
+.|+||+++...-+...++.++...+.. +.+...++ -.+|+.++++|+++|||||+|..+|+.+..++.-
T Consensus 59 vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l 138 (235)
T cd04405 59 VVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL 138 (235)
T ss_pred hhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence 4799999998888999999999876442 22222232 1289999999999999999999999988888873
Q ss_pred --CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhc-------ccCCCCchhhhHhhccccCCCCCh-------
Q psy9944 77 --ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK-------DRNKMSVENLASIWGPTLMHVENW------- 140 (183)
Q Consensus 77 --~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~-------~~nkM~~~nLa~~f~P~L~~~~~~------- 140 (183)
....+.++++++.++..||++||+.|+.|+.|+.+++.+. ..|+| +++..|+|.++++.+.
T Consensus 139 l~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~~~~~~~ 215 (235)
T cd04405 139 LGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLDEGLADL 215 (235)
T ss_pred hcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccCHHHHHH
Confidence 1458899999999999999999999999999999999985 25677 8999999999999855
Q ss_pred -hHHHHHHhhhhcCCCC
Q psy9944 141 -TTVIVVTYYQVKGPSS 156 (183)
Q Consensus 141 -~~~~~~~~~~~f~~~~ 156 (183)
...++++..++|.-+.
T Consensus 216 LV~Fmmd~~~~ifkvP~ 232 (235)
T cd04405 216 LVLFLMDHHQDIFKVPG 232 (235)
T ss_pred HHHHHHHcchhhhcCCc
Confidence 3456688888887754
No 55
>KOG4724|consensus
Probab=99.64 E-value=2.6e-16 Score=136.49 Aligned_cols=132 Identities=23% Similarity=0.212 Sum_probs=122.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
..|-.++||||..++...++++++.++.|. .+.+. .-.++++|.++|.|||..|.-+++.++|+.|...... .+.+
T Consensus 109 ~kgp~t~giFr~~anek~~relKe~lnsgv-~v~l~--~~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~-~~~e 184 (741)
T KOG4724|consen 109 CKGPCTRGIFRTIANEKNVRELKETLNSGV-DVGLK--SGEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPE-NVYE 184 (741)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHhcccc-ccccc--ccceEEeehhhhchhhhchhhhhccccHHHHhhcccc-ccHH
Confidence 468889999999999999999999999986 33443 4489999999999999999999999999999998888 8899
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE 138 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~ 138 (183)
+++..++++..+||..|..+|.+|...+ .+..++..|.|+.-|||+|++|+.+...
T Consensus 185 ~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~ 240 (741)
T KOG4724|consen 185 AIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVL 240 (741)
T ss_pred HHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccc
Confidence 9999999999999999999999999999 8889999999999999999999999885
No 56
>KOG4370|consensus
Probab=99.53 E-value=2.9e-14 Score=118.54 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=129.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCc--------------------c------------------ccCCcCCcCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAW--------------------Q------------------VQLSREQYTE 43 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~--------------------~------------------~~~~~~~~d~ 43 (183)
.+|..++|++|..+.+...+++++.-+.++. . ..-..+++.+
T Consensus 84 ~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p 163 (514)
T KOG4370|consen 84 ENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTP 163 (514)
T ss_pred ccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCc
Confidence 4688999999998887555554444333210 0 0001235678
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCc
Q psy9944 44 HDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123 (183)
Q Consensus 44 ~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~ 123 (183)
.+||+++|.|||+||+++++.++...|..++.. .......+.++.++..||..||.++.|+.-|+..|....--|||+.
T Consensus 164 ~tvcSllk~~lr~lpenlLT~el~~rFeev~~h-~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~ 242 (514)
T KOG4370|consen 164 KTVCSLLKSRLRRLPENLLTVELKTRFEEVFLH-AQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKLNK 242 (514)
T ss_pred hhHHHHHHHHHhhcchhhHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 999999999999999999999999999999999 8888999999999999999999999999999999999888999999
Q ss_pred hhhhHhhccccCCCCChhHHHHHHhhhhcCCCC
Q psy9944 124 ENLASIWGPTLMHVENWTTVIVVTYYQVKGPSS 156 (183)
Q Consensus 124 ~nLa~~f~P~L~~~~~~~~~~~~~~~~~f~~~~ 156 (183)
.+|+++.+|++--+.-...++..+...+|++..
T Consensus 243 q~i~i~lspt~q~s~r~l~al~~h~q~lf~~v~ 275 (514)
T KOG4370|consen 243 QQIFINLSPTEQESKRGLQALGLHLQTLFEMVR 275 (514)
T ss_pred hheeeecchHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 999999999998888788888888888888765
No 57
>KOG3565|consensus
Probab=99.12 E-value=9.7e-11 Score=104.29 Aligned_cols=135 Identities=28% Similarity=0.330 Sum_probs=119.3
Q ss_pred CCCCCCCccc-cCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC-CCCHHhHHHHHHHhccCCCH
Q psy9944 3 EGSMSEGIYR-RSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP-LLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 3 ~gl~~eGiFR-~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p-Li~~~~~~~~~~~~~~~~~~ 80 (183)
+|+..+|||| ++|....+...+.++..| ........+.+... +.++|.|++.+.+| .++++.+..+.++... .+.
T Consensus 232 ~~l~~~~i~~k~s~~e~~v~~~~~k~~~g-~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~~~-~~~ 308 (640)
T KOG3565|consen 232 RGLRLEGILRKVSGSESSVNDIISKCERG-MRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCAAR-DNL 308 (640)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hHhhhhccCcchhH-HHHHHHHHccCCCcccCccccccchhhhhhh-cCc
Confidence 6899999999 888889999999999998 45444444445555 99999999999999 9999999999999988 777
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
..+...++.++..+|..+..++.++..|+......+..|.|+..|+|+||||.+..-++.
T Consensus 309 ~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~ 368 (640)
T KOG3565|consen 309 LSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEG 368 (640)
T ss_pred hhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCccc
Confidence 777789999999999999999999999999999999999999999999999999776543
No 58
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.60 E-value=3.7e-07 Score=77.94 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=104.0
Q ss_pred CCCCCCCCcc---ccCCCHHHHHHHHHHH-hccCccccCC-------cCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHH
Q psy9944 2 SEGSMSEGIY---RRSGSTTNVSKLLAEF-RQDAWQVQLS-------REQYTEHDVSTVLKRFFRDLPEPLLSTELHVHL 70 (183)
Q Consensus 2 ~~gl~~eGiF---R~~g~~~~v~~l~~~~-~~~~~~~~~~-------~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~ 70 (183)
++|+++++|| |-.-+...++.+...+ ..+....... ....++|+++++||=.+..||..+++.+.|..|
T Consensus 21 ~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~~F 100 (420)
T PF08101_consen 21 SRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYEEF 100 (420)
T ss_pred hccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHHHH
Confidence 5899999998 6666667776655544 3333210000 123589999999999999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHH-HhhC-hhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 71 CNAAGMECATEDKVHIYRSLL-EKLH-PIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~ll-~~Lp-~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
...-+. . .-...++..++ ..|| +.|..++..++.++..|+.|+..|+|+..-|+..+|+-.|......
T Consensus 101 k~~E~~-~--~yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~ 170 (420)
T PF08101_consen 101 KRRERE-A--GYPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG 170 (420)
T ss_pred HHHHhh-c--CCChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence 776553 1 11234555555 6775 6678899999999999999999999999999999999999886444
No 59
>KOG4724|consensus
Probab=97.51 E-value=6.2e-05 Score=66.65 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=103.3
Q ss_pred CCCCCCCCccccCCCHHHHHHH----HHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKL----LAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME 77 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l----~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~ 77 (183)
+.|..++++||..-+.+-+.+= .....+.. -.+..+.+.+|++++++|.|+|++|..++..+.+..+..+.-.
T Consensus 444 kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~g--r~vdv~sspv~taasv~KdfnRKtpRgi~sr~ihke~~ea~~l- 520 (741)
T KOG4724|consen 444 KKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDG--RPVDVPSSPVHTAASVHKDFNRKTPRGIPSREIHKESMEATFL- 520 (741)
T ss_pred hcCCCCCccCCCccchhhhhhcccccchhhhccC--CcccCCCCCchHHHHHHHHhhhhcCCCccchHHHHHhhhhhhc-
Confidence 4678899999885544443222 12222211 1233346689999999999999999999999999999888877
Q ss_pred CCHHHHHHHHHH--------HHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 78 CATEDKVHIYRS--------LLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 78 ~~~~~~~~~l~~--------ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
..++++.++++. ...+.|............-...+..++..+.||..|++.|..|+...-++.
T Consensus 521 q~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd~~ 591 (741)
T KOG4724|consen 521 QHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVDDV 591 (741)
T ss_pred cchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccccccccCCCCCccccchhhc
Confidence 677778999988 788888887766666666666677889999999999999999988766544
No 60
>KOG1453|consensus
Probab=96.76 E-value=0.003 Score=59.49 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=110.6
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccC-ccccCCcCC--c-CHHHHHHHHHHHHhhC--CCCCCCHHhHHHHHH---
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDA-WQVQLSREQ--Y-TEHDVSTVLKRFFRDL--PEPLLSTELHVHLCN--- 72 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~-~~~~~~~~~--~-d~~~va~~lK~fLr~L--p~pLi~~~~~~~~~~--- 72 (183)
..|....|+||.+|....+...+..++..+ ...+..+.. + ++....+.++.|+|.+ |.+....+.|..+..
T Consensus 494 ~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c 573 (918)
T KOG1453|consen 494 SPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFMELEC 573 (918)
T ss_pred CCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhhccc
Confidence 357889999999999999999999998765 333333322 2 3445566999999999 999888888888872
Q ss_pred -------------HhccCCCHHHHH-------HHHHHHHH----hhChhHHHHHHHHHHHHHHHHhhcccC-CCCc-hhh
Q psy9944 73 -------------AAGMECATEDKV-------HIYRSLLE----KLHPIHYVTVRKLMGHLYFIQEKKDRN-KMSV-ENL 126 (183)
Q Consensus 73 -------------~~~~~~~~~~~~-------~~l~~ll~----~Lp~~~~~~L~~L~~~l~~v~~~~~~n-kM~~-~nL 126 (183)
.... ....++. ..+..+.. .+|.....++.++..|+.++--...+| .|+. +||
T Consensus 574 ~~c~~~chkkc~~~~~~-~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l 652 (918)
T KOG1453|consen 574 ELCRLVCHKKCLEALKS-LCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENL 652 (918)
T ss_pred ceeeeeccccchhhccc-cCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHH
Confidence 2222 3344455 67777787 999999999999999999999888888 7887 999
Q ss_pred hHhhcc----ccCCCCChhHHH
Q psy9944 127 ASIWGP----TLMHVENWTTVI 144 (183)
Q Consensus 127 a~~f~P----~L~~~~~~~~~~ 144 (183)
..+|++ +.++.++...+.
T Consensus 653 ~~~~e~~~~~v~l~~~dih~vt 674 (918)
T KOG1453|consen 653 SAVFENGDALVLLSTPDIHAVT 674 (918)
T ss_pred HHHhcCCccceecCCCChHHHH
Confidence 999999 778887665543
No 61
>KOG4271|consensus
Probab=96.22 E-value=0.0043 Score=57.28 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=94.2
Q ss_pred CCCCCCCC---ccccCC-CHHHHHHHHHHHh-ccCccccCCcCCcCHH--HHHHHHH--HHHhhCCCCCCCHHhHHHHHH
Q psy9944 2 SEGSMSEG---IYRRSG-STTNVSKLLAEFR-QDAWQVQLSREQYTEH--DVSTVLK--RFFRDLPEPLLSTELHVHLCN 72 (183)
Q Consensus 2 ~~gl~~eG---iFR~~g-~~~~v~~l~~~~~-~~~~~~~~~~~~~d~~--~va~~lK--~fLr~Lp~pLi~~~~~~~~~~ 72 (183)
+.|+..|| |-|.+. +...|+.-.-.++ .|.....+. +..+|| -|+..++ .-|+.++..+.+...+..+..
T Consensus 384 ~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~-~~~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~C~~ld~ 462 (1100)
T KOG4271|consen 384 KDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVN-SFQQPHLSYVGESIEKSHSLRQQGQQIAPKLQCVFLDE 462 (1100)
T ss_pred hcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchh-hhcCcchhHHHhhhhhhhhhhhcccccCCccccccccc
Confidence 46899999 888888 6666666555565 344222222 223788 5777887 788999999888887777766
Q ss_pred H--hccCCCHHHHHHHHHHHH-Hh--hChhHHH----HHHHHHHHHHHHHhhcccCCCCch-hhhHhhcc-ccCC
Q psy9944 73 A--AGMECATEDKVHIYRSLL-EK--LHPIHYV----TVRKLMGHLYFIQEKKDRNKMSVE-NLASIWGP-TLMH 136 (183)
Q Consensus 73 ~--~~~~~~~~~~~~~l~~ll-~~--Lp~~~~~----~L~~L~~~l~~v~~~~~~nkM~~~-nLa~~f~P-~L~~ 136 (183)
+ +.. .-.+.|+..++..+ .. .|.+++. ++.+++..+.-+..++..|.|++. .-+.|.+| .+++
T Consensus 463 a~gY~~-~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~ 536 (1100)
T KOG4271|consen 463 ASGYGR-DINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLR 536 (1100)
T ss_pred cccccc-cccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence 6 444 34455777776665 44 5777666 666666666777778899999999 99999999 5777
No 62
>KOG1449|consensus
Probab=95.12 E-value=0.0038 Score=54.92 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=32.8
Q ss_pred HHHHHHHhhcccCCCCchhhhHhhccccCCCCChhHH
Q psy9944 107 GHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTV 143 (183)
Q Consensus 107 ~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~~~ 143 (183)
.||..|+.++..+.|.+.|||++|+|+|+|+..++.-
T Consensus 2 rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~ 38 (670)
T KOG1449|consen 2 RHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESS 38 (670)
T ss_pred cchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHh
Confidence 6899999999999999999999999999998655443
No 63
>KOG1449|consensus
Probab=85.20 E-value=0.11 Score=46.14 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCC
Q psy9944 42 TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121 (183)
Q Consensus 42 d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM 121 (183)
|+..+...++.|.+.+|.|+.. .. ..+. +...+.+...+--...+++.|+.+-..|..||.+.+.-.
T Consensus 273 di~v~S~d~dp~s~Q~~pp~~~-~~------~~k~-Ds~s~sv~~~~~~~~~~se~~~r~a~~lse~ft~~~~~~----- 339 (670)
T KOG1449|consen 273 DIVVESWDMDPYSRQLPPPYPK-EA------FEKE-DSLSESVESLRFSLETMSEAHYRTAKFLSEHFTRLCKSK----- 339 (670)
T ss_pred ceeeeccccChhhhhcCCCCcc-cc------cccc-cCcccceeeeccccccCCcccchHhhhhchhhhhhcccc-----
Confidence 6777788999999999999555 11 1222 445566777777888899999999999999999988643
Q ss_pred CchhhhHhhccccCCCCC
Q psy9944 122 SVENLASIWGPTLMHVEN 139 (183)
Q Consensus 122 ~~~nLa~~f~P~L~~~~~ 139 (183)
.+++|+|.|+++|++.
T Consensus 340 --~s~~I~~~~~~~r~pp 355 (670)
T KOG1449|consen 340 --KSLAIVWSPNLFRPPP 355 (670)
T ss_pred --ccceeecCCCCCCCCC
Confidence 7999999999999964
No 64
>KOG4370|consensus
Probab=57.85 E-value=44 Score=29.18 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=46.5
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhcc------CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHh
Q psy9944 41 YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGM------ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQE 114 (183)
Q Consensus 41 ~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~ 114 (183)
.|+|+.++..|+|++..|+|++|-++=..+.++.+. ...+..-...++..+..||..- .|- -++..|..|..
T Consensus 118 aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenl-LT~-el~~rFeev~~ 195 (514)
T KOG4370|consen 118 ADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENL-LTV-ELKTRFEEVFL 195 (514)
T ss_pred HHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhh-HHH-HHHHHHHHHHc
Confidence 489999999999999999999998766666666632 1122233444555555555432 222 34555555555
Q ss_pred h
Q psy9944 115 K 115 (183)
Q Consensus 115 ~ 115 (183)
|
T Consensus 196 h 196 (514)
T KOG4370|consen 196 H 196 (514)
T ss_pred c
Confidence 4
No 65
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=56.36 E-value=61 Score=22.33 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHH
Q psy9944 49 VLKRFFRDLPEPLLSTELHVHLCNAAGM-ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHL 109 (183)
Q Consensus 49 ~lK~fLr~Lp~pLi~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l 109 (183)
-+..-+..|| ..+..+.++... +....++...+..+...+|+. ..+|.++...+
T Consensus 55 ~~~~vi~~L~------~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e-~~~l~~i~~~~ 109 (113)
T PF02520_consen 55 NVTAVISNLS------SAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEE-VDTLFFIRKEI 109 (113)
T ss_pred HHHHHHHHHH------HHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH
Confidence 3444456666 788888888775 356788899999999999999 88888887655
No 66
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=54.46 E-value=51 Score=21.93 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=35.3
Q ss_pred ccc-CCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhC---------------CCCCCCHHhHHHHH
Q psy9944 11 YRR-SGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDL---------------PEPLLSTELHVHLC 71 (183)
Q Consensus 11 FR~-~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~L---------------p~pLi~~~~~~~~~ 71 (183)
||. +-+...++++...+.... .+ +-=+..++++-|.|+.+| ..||-|..+-+.+.
T Consensus 12 ~Rra~f~k~~iKr~~~~~~~~~----v~--~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 12 FRRSSFPKAAIKRLIQSVTGQS----VS--QNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred HHHhhccHHHHHHHHHHHcCCC----CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 443 356677777766554322 11 113457889999999999 77887777666553
No 67
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.30 E-value=20 Score=25.14 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=33.4
Q ss_pred CccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhC
Q psy9944 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDL 57 (183)
Q Consensus 9 GiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~L 57 (183)
.-|+++|-.+++..++..+-... .++. +-++..+|.=+-.+++.|
T Consensus 62 enfvisG~ISqi~~i~~~iv~e~--sele--qeeve~La~Plld~lkRL 106 (124)
T COG4835 62 ENFVISGRISQINQIKDRIVKEP--SELE--QEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeEEeeehHHHHHHHhHhccCH--HHhh--HHHHHHHHHHHHHHHHHh
Confidence 34899999999999999887543 2333 448888888777777766
No 68
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=43.91 E-value=45 Score=30.47 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHhhCCCCCCCHHhHH------HHHHHhcc--CCCHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCC
Q psy9944 50 LKRFFRDLPEPLLSTELHV------HLCNAAGM--ECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121 (183)
Q Consensus 50 lK~fLr~Lp~pLi~~~~~~------~~~~~~~~--~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM 121 (183)
++.|++..|--++..+.-- ...+..+. ..........++.....|++..+.+..|++.+...+.. |
T Consensus 302 ~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~~~~~~~~~l~~~I~~~~~~Lt~~E~~IA~yIl~n~~~v~~------~ 375 (638)
T PRK14101 302 FEAYLANIPTYLITAEYPAFLGVSAILAEQLSNRTGGASSAVFERIRQMRDALTPAERRVADLALNHPRSIIN------D 375 (638)
T ss_pred hHHHHhcCCEEEEeCCChhHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------c
Confidence 4456667776666554211 11111111 13345677888889999999999999999999988875 5
Q ss_pred CchhhhHhh
Q psy9944 122 SVENLASIW 130 (183)
Q Consensus 122 ~~~nLa~~f 130 (183)
|...||.--
T Consensus 376 si~eLA~~~ 384 (638)
T PRK14101 376 PIVDIARKA 384 (638)
T ss_pred cHHHHHHHh
Confidence 777776443
No 69
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=43.41 E-value=88 Score=20.11 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHH-HhhChhHHHHH
Q psy9944 49 VLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLL-EKLHPIHYVTV 102 (183)
Q Consensus 49 ~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~Lp~~~~~~L 102 (183)
+||.+++.|-.+--+.++-..|....+. .+..+....=+.++ ..+|+..-.-|
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~-Vs~~EI~~~Eq~Li~eG~~~eeiq~L 54 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSD-VSASEISAAEQELIQEGMPVEEIQKL 54 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4788999999988888888889888887 77778777777777 55666654433
No 70
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=43.07 E-value=40 Score=19.62 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=21.8
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhc
Q psy9944 85 HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWG 131 (183)
Q Consensus 85 ~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~ 131 (183)
..+...+..||+..+.++.... ...|+...+|..+|
T Consensus 2 ~~l~~~l~~L~~~~r~i~~l~~-----------~~g~s~~eIa~~l~ 37 (54)
T PF08281_consen 2 EALQQALAQLPERQREIFLLRY-----------FQGMSYAEIAEILG 37 (54)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHH-----------TS---HHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-----------HHCcCHHHHHHHHC
Confidence 4678899999999998875432 24455555555553
No 71
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=41.61 E-value=33 Score=19.75 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=23.1
Q ss_pred HHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 90 LLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 90 ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
++..||+..+.++...+ ...||...+|..+|=+
T Consensus 1 Al~~L~~~er~vi~~~y-----------~~~~t~~eIa~~lg~s 33 (50)
T PF04545_consen 1 ALDQLPPREREVIRLRY-----------FEGLTLEEIAERLGIS 33 (50)
T ss_dssp HHCTS-HHHHHHHHHHH-----------TST-SHHHHHHHHTSC
T ss_pred ChhhCCHHHHHHHHHHh-----------cCCCCHHHHHHHHCCc
Confidence 36778999988887665 5678888888877643
No 72
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.31 E-value=73 Score=21.66 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhh
Q psy9944 16 STTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRD 56 (183)
Q Consensus 16 ~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~ 56 (183)
+..+|.+|++.|..|.+ ..|..-||.-|-.|+.+
T Consensus 59 ~~~kVeeiK~aI~~G~y-------kvD~~kiAd~ll~f~~~ 92 (93)
T COG2747 59 REEKVEELKQAIENGEY-------KVDTEKIADKLLDFAKQ 92 (93)
T ss_pred hHHHHHHHHHHHHcCCe-------eecHHHHHHHHHHHHhc
Confidence 45789999999999973 34778888877777654
No 73
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=36.09 E-value=93 Score=18.71 Aligned_cols=30 Identities=7% Similarity=0.217 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHH
Q psy9944 16 STTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKR 52 (183)
Q Consensus 16 ~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~ 52 (183)
+..+|..+++.+..|.+ ..|...+|.-+-.
T Consensus 26 r~~kV~~ik~~I~~G~Y-------~vd~~~iA~~ml~ 55 (57)
T PF04316_consen 26 RAEKVAEIKAAIASGTY-------KVDAEKIAEKMLD 55 (57)
T ss_dssp SHHHHHHHHHHHHTT------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-------CCCHHHHHHHHHh
Confidence 56789999999999974 3366677765433
No 74
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=34.16 E-value=32 Score=22.16 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=30.4
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCC
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~ 59 (183)
.+|-|+++|+. .++.+.+.+... +..+ +..++|+.+-..+..+|.
T Consensus 4 ~~~~~~v~G~~-~l~~l~~~~~~~-----l~~~--~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGST-PLDDLNELLGLD-----LPEE--DYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTS-BHHHHHHHHTS------TTTT--TTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecC-CHHHHHHHHCcC-----CCcc--chhhHHHHHHHHcCCCCC
Confidence 35778888854 455777767542 3322 667999999999999986
No 75
>TIGR03209 P21_Cbot clostridium toxin-associated regulator BotR. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.
Probab=34.14 E-value=1.2e+02 Score=21.35 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+..++..||+..|.++..-. ...|+...+|..+|-+
T Consensus 97 ~~~~l~~~l~~Lp~~~r~v~~l~~-----------~~~~s~~EIA~~l~is 136 (142)
T TIGR03209 97 LEFEFNDLISILPNKQKKIIYMKF-----------FEDMKEIDIAKKLHIS 136 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----------HcCCCHHHHHHHHCcC
Confidence 345688899999999998874321 2457777887777643
No 76
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=34.11 E-value=73 Score=20.33 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhh
Q psy9944 84 VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIW 130 (183)
Q Consensus 84 ~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f 130 (183)
...++.....|++..+.+..|++.+...+.. |+...||...
T Consensus 4 ~~~i~~~~~~ls~~e~~Ia~yil~~~~~~~~------~si~elA~~~ 44 (77)
T PF01418_consen 4 LEKIRSQYNSLSPTEKKIADYILENPDEIAF------MSISELAEKA 44 (77)
T ss_dssp HHHHHHHGGGS-HHHHHHHHHHHH-HHHHCT--------HHHHHHHC
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHH------ccHHHHHHHc
Confidence 3556677788999999999999999888765 6888887554
No 77
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=33.35 E-value=1.2e+02 Score=21.84 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+..++..||+..+.++.... ..+|+...+|..+|-+
T Consensus 112 ~~~~l~~~l~~L~~~~r~vl~l~~-----------~~g~s~~eIA~~l~is 151 (170)
T TIGR02952 112 ANEKLLKALKILTPKQQHVIALRF-----------GQNLPIAEVARILGKT 151 (170)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----------hcCCCHHHHHHHHCCC
Confidence 356788999999999999886532 1568999999888765
No 78
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=30.62 E-value=1.4e+02 Score=18.60 Aligned_cols=44 Identities=14% Similarity=0.002 Sum_probs=28.2
Q ss_pred CHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHH
Q psy9944 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106 (183)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~ 106 (183)
+.+.|...++-...+.+..+....+++.+..++...|..+..++
T Consensus 15 s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l 58 (67)
T PF01099_consen 15 SPEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLL 58 (67)
T ss_dssp -HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67777777776665344556678888888999988877665544
No 79
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=28.78 E-value=1.5e+02 Score=21.26 Aligned_cols=40 Identities=13% Similarity=-0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+..++..||+..+.++..-. ...|+...+|..+|=+
T Consensus 96 ~~~~l~~~l~~Lp~~~r~v~~l~~-----------~~g~s~~EIA~~lgis 135 (160)
T PRK09642 96 QKLLIAQKLRELPENYRDVVLAHY-----------LEEKSYQEIALQEKIE 135 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----------HhCCCHHHHHHHHCCC
Confidence 345688999999999998874321 1457777777776543
No 80
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=27.90 E-value=1.2e+02 Score=20.36 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHH
Q psy9944 16 STTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKR 52 (183)
Q Consensus 16 ~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~ 52 (183)
+..+|+++++.+..|.+ ..|...||.-+..
T Consensus 64 ~~~kV~~ik~aI~~G~Y-------~vd~~~iA~~ml~ 93 (95)
T TIGR03824 64 DAEKVAEIKAAIANGSY-------KVDAEKIADKLLD 93 (95)
T ss_pred hHHHHHHHHHHHHcCCC-------CCCHHHHHHHHHh
Confidence 35679999999999874 3467777765543
No 81
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=26.99 E-value=1.9e+02 Score=20.71 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+...+..||+..+.++... ....|+.+.+|..+|-+
T Consensus 95 ~~~~l~~~l~~L~~~~r~v~~l~-----------~~~~~s~~eIA~~lgis 134 (159)
T PRK12527 95 RLALLQRALAELPPACRDSFLLR-----------KLEGLSHQQIAEHLGIS 134 (159)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH-----------HHcCCCHHHHHHHhCCC
Confidence 44568889999999999877443 12568888888888765
No 82
>smart00096 UTG Uteroglobin.
Probab=26.29 E-value=1.8e+02 Score=18.56 Aligned_cols=44 Identities=9% Similarity=-0.035 Sum_probs=30.9
Q ss_pred CHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHH
Q psy9944 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106 (183)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~ 106 (183)
+.+.|..-+.-.+...+--+....++..++.||...|..+..++
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll 60 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLT 60 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55667766666665344446667889999999999998765543
No 83
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated
Probab=24.88 E-value=2e+02 Score=20.52 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+..++..||+..+.++.... ...|+.+.+|-.+|-+
T Consensus 99 ~~~~l~~~l~~L~~~~r~v~~l~~-----------~~~~s~~EIA~~lgis 138 (163)
T PRK07037 99 TLRHVADALSELPARTRYAFEMYR-----------LHGETQKDIARELGVS 138 (163)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----------HcCCCHHHHHHHHCCC
Confidence 346678899999999999885432 2457777777777654
No 84
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=24.55 E-value=1.2e+02 Score=24.13 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHh
Q psy9944 84 VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASI 129 (183)
Q Consensus 84 ~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~ 129 (183)
...++.....|++..+.+..|++.+...+.. ||...||--
T Consensus 4 ~~~i~~~~~~Lt~~e~~Ia~yil~n~~~v~~------~si~~lA~~ 43 (284)
T PRK11302 4 LEKIQSRLEHLSKSERKVAEVILASPQTAIH------SSIATLAKM 43 (284)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHhCHHHHHh------cCHHHHHHH
Confidence 4567788899999999999999999988876 566666643
No 85
>PF15063 TC1: Thyroid cancer protein 1
Probab=24.36 E-value=1.1e+02 Score=20.03 Aligned_cols=34 Identities=9% Similarity=0.215 Sum_probs=20.5
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHH
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLK 51 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK 51 (183)
.++|+.+|+..--++-+-.+..++ |+..+|..|+
T Consensus 43 qrLF~~sGD~kAEeRA~iI~~~~~----------d~ee~a~AL~ 76 (79)
T PF15063_consen 43 QRLFQKSGDKKAEERARIIWECAQ----------DPEEKARALM 76 (79)
T ss_pred HHHHHHccchhHHHHHHHHHhhCC----------CHHHHHHHHH
Confidence 367777777766555554443322 6776776665
No 86
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=23.84 E-value=2.2e+02 Score=20.09 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
++....+..++..||+..+.++.... ...|+...+|..+|-+
T Consensus 94 ~~~~~~l~~~l~~L~~~~r~ii~l~~-----------~~~~s~~EIA~~l~is 135 (154)
T PRK06759 94 EDVEMKVKDFMSVLDEKEKYIIFERF-----------FVGKTMGEIALETEMT 135 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH-----------hcCCCHHHHHHHHCCC
Confidence 34457788999999999998875432 1457888888777644
No 87
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=23.76 E-value=1.7e+02 Score=17.52 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCCCHHhHHHHHHHhccCCCHHHHHHHHHHHH
Q psy9944 60 PLLSTELHVHLCNAAGMECATEDKVHIYRSLL 91 (183)
Q Consensus 60 pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 91 (183)
|+||.++.+.++..++. ...+.++..+..+.
T Consensus 1 P~IPD~v~~~yL~~~G~-~~~D~rv~RLvSLa 31 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGF-QTSDPRVKRLVSLA 31 (51)
T ss_pred CCCCHHHHHHHHHHCCC-CCCCHhHHHHHHHH
Confidence 78999999999998887 55555555554443
No 88
>PRK12798 chemotaxis protein; Reviewed
Probab=23.58 E-value=3.1e+02 Score=24.01 Aligned_cols=64 Identities=6% Similarity=0.100 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHH
Q psy9944 42 TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106 (183)
Q Consensus 42 d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~ 106 (183)
|..-...+-.+|+|....++.-.++.+.|....-. -+.+.+...+..++..+++..+.-+...+
T Consensus 200 ~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~-~~d~~~~~~l~~~ls~~d~~~q~~lYL~i 263 (421)
T PRK12798 200 DADKFEALARNYLRRFRHSPYASQFAQRFVDLVVR-LDDEIRDARLVEILSFMDPERQRELYLRI 263 (421)
T ss_pred cHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHh-ccccccHHHHHHHHHhcCchhHHHHHHHH
Confidence 55666778899999999999999999999887765 34555667799999999999887654443
No 89
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=23.42 E-value=2.1e+02 Score=20.33 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
....+..++..||+..|.++.... .-.|+...+|..+|-
T Consensus 96 ~~~~l~~~l~~Lp~~~r~v~~l~~-----------~~g~s~~EIA~~lgi 134 (161)
T PRK09047 96 VLQLIEEAIQKLPARQREAFLLRY-----------WEDMDVAETAAAMGC 134 (161)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----------HhcCCHHHHHHHHCC
Confidence 456688899999999999885432 134677777777764
No 90
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.34 E-value=1.6e+02 Score=23.66 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhh
Q psy9944 79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIW 130 (183)
Q Consensus 79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f 130 (183)
.+......++.....|++..+.+..|++.+...+.. |+...||.--
T Consensus 11 ~~~~i~~~i~~~~~~Lt~~e~~Ia~yil~~~~~v~~------~si~~lA~~~ 56 (292)
T PRK11337 11 NGIGLGPYIRMKQEGLTPLESRVVEWLLKPGDLSEA------TALKDIAEAL 56 (292)
T ss_pred CchhHHHHHHHHHhhcCHHHHHHHHHHHhCHHHHHh------cCHHHHHHHh
Confidence 345566788888999999999999999999887776 5666666443
No 91
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=22.06 E-value=1.6e+02 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhH
Q psy9944 44 HDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIH 98 (183)
Q Consensus 44 ~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~ 98 (183)
..-...+..|+..||+--+|. ..........+.++.+||+.-
T Consensus 27 gl~~~~v~~Ym~~LP~~~vP~-------------~gS~Ge~~R~~QL~~QLP~hD 68 (106)
T PF06297_consen 27 GLSPELVEQYMSCLPEEKVPV-------------VGSPGEKYRRRQLLYQLPPHD 68 (106)
T ss_pred CCChHHHHHHHHhCCCcCCCC-------------CCCHHHHHHHHHHHHcCCccc
Confidence 345678889999999877776 333333445566777777654
No 92
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=21.82 E-value=2.8e+02 Score=20.06 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhc
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK 116 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~ 116 (183)
....+++.+...|...|..+..+-+.+|..++.++
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC 69 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC 69 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 33455666666666666666666666666666654
No 93
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=21.08 E-value=2.6e+02 Score=20.57 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 83 KVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 83 ~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
....+..++..||+..|.++..- . .-.|+.+.+|..+|-+
T Consensus 117 ~~~~l~~~l~~Lp~~~R~v~~L~-----~------~~g~s~~EIA~~lgis 156 (178)
T PRK12529 117 TLHEIDALLDTLRPRVKQAFLMA-----T------LDGMKQKDIAQALDIA 156 (178)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH-----H------HcCCCHHHHHHHHCCC
Confidence 34568889999999999987432 1 1346777777777643
No 94
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=20.40 E-value=2.7e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 85 HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 85 ~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
..+..++.+||+..+.++..-. ...|+.+.+|..+|-+
T Consensus 105 ~~l~~~l~~L~~~~r~v~~L~~-----------~~g~s~~EIA~~l~is 142 (161)
T PRK12528 105 VELDQLLDGLPPLVKRAFLLAQ-----------VDGLGYGEIATELGIS 142 (161)
T ss_pred HHHHHHHHHCCHHHHHHHHHHH-----------HcCCCHHHHHHHHCCC
Confidence 5677889999999998874321 2457888888887754
No 95
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=20.37 E-value=1e+02 Score=16.11 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHhhChhHHHHHHHHHHHH
Q psy9944 90 LLEKLHPIHYVTVRKLMGHL 109 (183)
Q Consensus 90 ll~~Lp~~~~~~L~~L~~~l 109 (183)
..+.||..||..+..+...+
T Consensus 2 ~~~~LP~~Hr~~l~~l~~v~ 21 (30)
T PF08525_consen 2 WFNPLPKLHRRALIALSAVV 21 (30)
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 35678999999887776554
Done!