Query psy9944
Match_columns 183
No_of_seqs 119 out of 1090
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 23:40:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 3.4E-38 1.2E-42 246.4 13.9 151 2-154 48-213 (214)
2 2osa_A N-chimaerin; RHO-GAP, G 100.0 3.5E-38 1.2E-42 244.3 13.0 139 2-141 37-176 (202)
3 2ee4_A RHO GTPase activating p 100.0 2.9E-38 9.9E-43 246.0 12.4 153 2-156 40-206 (209)
4 3msx_B RHO GTPase-activating p 100.0 4.6E-38 1.6E-42 243.4 13.3 135 2-140 39-173 (201)
5 1pbw_A Rhogap domain, phosphat 100.0 2.1E-38 7.2E-43 248.0 8.6 154 2-158 38-204 (216)
6 1f7c_A Rhogap protein; GTPase 100.0 1.8E-37 6.2E-42 244.9 13.9 155 2-157 50-221 (231)
7 3fk2_A Glucocorticoid receptor 100.0 2.6E-37 8.9E-42 246.1 13.3 151 2-154 81-245 (246)
8 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 3.9E-37 1.3E-41 242.7 13.7 152 2-156 50-223 (229)
9 1tx4_A P50-rhogap; complex (GT 100.0 3.2E-37 1.1E-41 238.3 12.2 134 2-140 39-173 (198)
10 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.2E-36 4E-41 235.7 13.7 133 2-138 30-163 (201)
11 1ow3_A RHO-GTPase-activating p 100.0 1.6E-36 5.5E-41 241.0 12.2 150 2-156 75-238 (242)
12 3kuq_A RHO GTPase-activating p 100.0 3.9E-36 1.3E-40 236.9 10.7 137 2-141 49-185 (228)
13 3eap_A RHO GTPase-activating p 100.0 5.8E-35 2E-39 235.5 12.6 148 2-155 95-260 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 2.3E-34 7.9E-39 247.5 13.6 138 2-140 298-436 (463)
15 3qis_A Inositol polyphosphate 100.0 4.7E-32 1.6E-36 226.8 12.5 129 2-141 212-340 (366)
16 2xs6_A Phosphatidylinositol 3- 100.0 4.7E-33 1.6E-37 217.2 3.3 124 2-140 53-176 (214)
17 2xv9_A ABA-1A1 repeat UNIT; li 49.9 16 0.00054 25.6 3.4 69 44-112 59-128 (134)
18 1ccd_A Clara cell 17 KD protei 46.2 34 0.0012 21.3 4.3 44 63-106 19-62 (77)
19 4h5l_A Nucleoprotein; nucleoca 43.0 51 0.0018 25.5 5.6 101 15-132 18-118 (253)
20 1rp3_B Anti sigma factor FLGM; 37.8 43 0.0015 21.4 3.9 32 16-54 56-87 (88)
21 3hug_A RNA polymerase sigma fa 34.9 81 0.0028 19.5 5.1 40 82-132 26-65 (92)
22 3iwf_A Transcription regulator 32.8 43 0.0015 22.0 3.4 42 84-131 5-46 (107)
23 2o3f_A Putative HTH-type trans 32.4 55 0.0019 21.6 3.9 40 85-130 10-49 (111)
24 3llb_A Uncharacterized protein 32.4 32 0.0011 21.4 2.6 46 7-60 7-52 (83)
25 2o8x_A Probable RNA polymerase 27.3 49 0.0017 19.0 2.7 40 82-132 4-43 (70)
26 3lae_A UPF0053 protein HI0107; 26.5 38 0.0013 20.9 2.1 45 7-59 7-51 (81)
27 1utg_A Uteroglobin; steroid bi 26.1 1.1E+02 0.0039 18.4 6.1 44 63-106 17-60 (70)
28 1rp3_A RNA polymerase sigma fa 23.2 1.2E+02 0.0041 21.8 4.8 38 84-132 178-215 (239)
29 2pli_A Uncharacterized protein 23.1 43 0.0015 21.2 2.0 45 8-60 17-61 (91)
30 2r2z_A Hemolysin; APC85144, en 22.7 45 0.0015 21.1 2.0 45 8-60 15-59 (93)
31 3t72_q RNA polymerase sigma fa 22.0 1.4E+02 0.0049 19.1 4.4 46 81-133 7-52 (99)
32 2p13_A CBS domain; alpha-beta 22.0 52 0.0018 20.7 2.2 47 7-59 13-59 (90)
33 2rk5_A Putative hemolysin; str 21.4 48 0.0016 20.7 1.9 44 8-59 7-50 (87)
34 2pls_A CBS domain protein; APC 21.2 57 0.002 20.2 2.2 49 7-60 7-56 (86)
35 2p3h_A Uncharacterized CBS dom 21.1 49 0.0017 21.6 1.9 45 8-60 11-55 (101)
36 3mzy_A RNA polymerase sigma-H 20.1 1.5E+02 0.0052 19.6 4.5 39 82-132 97-136 (164)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=246.42 Aligned_cols=151 Identities=33% Similarity=0.523 Sum_probs=133.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..++++|++.+++|. ..++.... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus 48 ~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~-~~~~~~~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~-~~~ 125 (214)
T 3byi_A 48 KRGLDVDGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKK-QDN 125 (214)
T ss_dssp HHTTTSTTTTTSCCCHHHHHHHHHHHHTTC-CCCTTSGGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTS-SSH
T ss_pred HhCCCCCCccccCCCHHHHHHHHHHHhcCC-CCCCCcccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCH
Confidence 369999999999999999999999999986 33433222 399999999999999999999999999999999987 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh--------------HHHHH
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT--------------TVIVV 146 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~--------------~~~~~ 146 (183)
++++..++.++.+||+.|+.+|.+|+.||++|+.|++.||||++|||+||||+|++++... +.+++
T Consensus 126 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLa~vf~P~Ll~~~~~~~~~~~~~~~~~~vve~LI~ 205 (214)
T 3byi_A 126 NTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMAIHMVYQNQIAELMLS 205 (214)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHCCTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCCCCHHHhHHHhccccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996432 34557
Q ss_pred HhhhhcCC
Q psy9944 147 TYYQVKGP 154 (183)
Q Consensus 147 ~~~~~f~~ 154 (183)
+|..+|+.
T Consensus 206 ~~~~iF~~ 213 (214)
T 3byi_A 206 EYSKIFGS 213 (214)
T ss_dssp THHHHHC-
T ss_pred HHHHhcCC
Confidence 77777764
No 2
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=244.34 Aligned_cols=139 Identities=30% Similarity=0.474 Sum_probs=127.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..++++|++.+++++...+++... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus 37 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLpePLl~~~~~~~~~~~~~~-~~~ 115 (202)
T 2osa_A 37 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI-MDP 115 (202)
T ss_dssp HHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHC-CSH
T ss_pred HhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCH
Confidence 369999999999999999999999999865444554323 499999999999999999999999999999999988 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
+++++.++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|+++++..
T Consensus 116 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~vf~P~Ll~~~~~~ 176 (202)
T 2osa_A 116 DEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 176 (202)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999997643
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.9e-38 Score=246.00 Aligned_cols=153 Identities=29% Similarity=0.483 Sum_probs=137.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.+++|. ..++....+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.+
T Consensus 40 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~~~~~~~~d~~~va~lLK~flreLPePLi~~~l~~~~~~~~~~-~~~~ 117 (209)
T 2ee4_A 40 DTGLCTEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKI-PDKT 117 (209)
T ss_dssp HTCSCCTTTTTSCCCHHHHHHHHHHHHHCT-TCCHHHHTCCHHHHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSC-SSHH
T ss_pred HhCCCCCCccccCCCHHHHHHHHHHHhcCC-CCCcccCCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC-CCHH
Confidence 479999999999999999999999999986 23332224699999999999999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHHHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIVVT 147 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~~~ 147 (183)
+++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|||+||||+|+|++.. .+.++++
T Consensus 118 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~~l~~~~~~~~vve~LI~~ 197 (209)
T 2ee4_A 118 ERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQ 197 (209)
T ss_dssp HHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSCCSCCCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHHHHHHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998522 3466788
Q ss_pred hhhhcCCCC
Q psy9944 148 YYQVKGPSS 156 (183)
Q Consensus 148 ~~~~f~~~~ 156 (183)
+..+|....
T Consensus 198 ~~~iF~~~~ 206 (209)
T 2ee4_A 198 CQFFFYNGE 206 (209)
T ss_dssp HHHHTTCCC
T ss_pred hHHHcCCCC
Confidence 888887654
No 4
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=243.44 Aligned_cols=135 Identities=24% Similarity=0.420 Sum_probs=126.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+++++++.++.|. .. +++.+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.+
T Consensus 39 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~--~~~~~d~~~va~lLK~flreLp~pLl~~~l~~~~~~~~~~-~~~~ 114 (201)
T 3msx_B 39 QKGPLTKGIFRQSANVKSCRELKEKLNSGV-EV--HLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQ-GNDE 114 (201)
T ss_dssp HHGGGSTTTTTSCCCHHHHHHHHHHHHHTC-CC--CTTSSCHHHHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGS-SSHH
T ss_pred HhCCCCCCeeeeCCCHHHHHHHHHHhccCC-CC--CCCcccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcc-ccHH
Confidence 468999999999999999999999999986 23 3446699999999999999999999999999999999987 7889
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
+++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+|+++.
T Consensus 115 ~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~ll~~~~~ 173 (201)
T 3msx_B 115 EKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPAS 173 (201)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999754
No 5
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=2.1e-38 Score=247.97 Aligned_cols=154 Identities=18% Similarity=0.381 Sum_probs=131.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..+ ++|++.+++|....+ ++.+|+|++|++||.|||+||+||+|.++|+.|+++.+...+.+
T Consensus 38 ~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~--~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~ 114 (216)
T 1pbw_A 38 KKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVD--LEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE 114 (216)
T ss_dssp HHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCC--GGGBCHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHH
T ss_pred HcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCC--ccccCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 369999999999999999 999999999863333 34679999999999999999999999999999999997437888
Q ss_pred HHHHHHHHHHH--hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh-----------HHHHHHh
Q psy9944 82 DKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT-----------TVIVVTY 148 (183)
Q Consensus 82 ~~~~~l~~ll~--~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~-----------~~~~~~~ 148 (183)
+++..++.++. +||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+|+++.. +.+++++
T Consensus 115 ~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~vve~LI~~~ 194 (216)
T 1pbw_A 115 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDNTENLIKVIEILISTE 194 (216)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhhhHHHHHHHHHHHhhh
Confidence 99999999999 9999999999999999999999999999999999999999999997542 3567899
Q ss_pred hhhcCCCCCC
Q psy9944 149 YQVKGPSSPI 158 (183)
Q Consensus 149 ~~~f~~~~~~ 158 (183)
+.+|++.+.+
T Consensus 195 ~~iF~~~P~~ 204 (216)
T 1pbw_A 195 WNERQPAPAL 204 (216)
T ss_dssp C---------
T ss_pred HHhcCCCCCC
Confidence 9999987543
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=1.8e-37 Score=244.92 Aligned_cols=155 Identities=23% Similarity=0.405 Sum_probs=134.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHH-HHhccC-ccccCCc-CCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLA-EFRQDA-WQVQLSR-EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMEC 78 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~-~~~~~~-~~~~~~~-~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~ 78 (183)
++|+.+|||||++|+..+++++++ .++.+. ...++.. ..+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .
T Consensus 50 ~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~ 128 (231)
T 1f7c_A 50 TRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKL-E 128 (231)
T ss_dssp HHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTC-S
T ss_pred HhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhc-C
Confidence 369999999999999999999986 467764 1233331 24799999999999999999999999999999999988 7
Q ss_pred CHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC--------------hhHHH
Q psy9944 79 ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN--------------WTTVI 144 (183)
Q Consensus 79 ~~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~--------------~~~~~ 144 (183)
+.++++..++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|++++. ..+.+
T Consensus 129 ~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~vve~L 208 (231)
T 1f7c_A 129 NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAIMDIKFQNIVIEIL 208 (231)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999964 23567
Q ss_pred HHHhhhhcCCCCC
Q psy9944 145 VVTYYQVKGPSSP 157 (183)
Q Consensus 145 ~~~~~~~f~~~~~ 157 (183)
+++|..+|+....
T Consensus 209 I~~~~~iF~~~~~ 221 (231)
T 1f7c_A 209 IENHEKIFNTVPE 221 (231)
T ss_dssp HHTHHHHHHSCCC
T ss_pred HHHHHHhCCCCCC
Confidence 8999999987763
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=246.11 Aligned_cols=151 Identities=26% Similarity=0.444 Sum_probs=135.2
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..++++|++.++.|. ..++..+.+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus 81 ~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~-~~~~~~~~~dvh~va~lLK~fLReLPePLl~~~l~~~~~~~~~~-~~~~ 158 (246)
T 3fk2_A 81 ATGLSTEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKI-NDRE 158 (246)
T ss_dssp HHCTTSTTTTTSCCCHHHHHHHHHHHHHCT-TCCSGGGTCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHTTC-CSHH
T ss_pred HhCCCCCCeeEeCCcHHHHHHHHHHHhcCC-CCCcccccCcHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHhcc-CCHH
Confidence 369999999999999999999999999987 34554456799999999999999999999999999999999987 8889
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh--------------hHHHHHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW--------------TTVIVVT 147 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~--------------~~~~~~~ 147 (183)
+++..++.++.+||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+|+||+.. .+.++++
T Consensus 159 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~ive~LI~~ 238 (246)
T 3fk2_A 159 QKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDFSTMDALTATRTYQTIIELFIQQ 238 (246)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHCCCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998522 2355667
Q ss_pred hhhhcCC
Q psy9944 148 YYQVKGP 154 (183)
Q Consensus 148 ~~~~f~~ 154 (183)
+..+|.+
T Consensus 239 ~~~iF~n 245 (246)
T 3fk2_A 239 CPFFFYN 245 (246)
T ss_dssp HHHHHC-
T ss_pred HHHhcCC
Confidence 7767653
No 8
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=242.68 Aligned_cols=152 Identities=28% Similarity=0.494 Sum_probs=132.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC--cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCC
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ--YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECA 79 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~--~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~ 79 (183)
++|+ +|||||++|+..++++|++.++.|. ..++..+. +|+|++|++||.|||+||+||+|.++|+.|+++.+. .+
T Consensus 50 ~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~-~~~~~~~~~~~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~-~~ 126 (229)
T 3iug_A 50 RYGI-VDGIYRLSGVASNIQRLRHEFDSEH-VPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSA-AT 126 (229)
T ss_dssp HHCC-STTTTTSCCCHHHHHHHHHHHHTTC-CCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTS-SS
T ss_pred HcCC-CCCCeecCCcHHHHHHHHHHHhcCC-CCCccccccccchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHc-CC
Confidence 4688 8999999999999999999999986 33333322 499999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------------
Q psy9944 80 TEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW------------------- 140 (183)
Q Consensus 80 ~~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~------------------- 140 (183)
.++++..++.++.+||+.|+.+|++|+.||++|++|++.||||+.|||+||||+|+|+++.
T Consensus 127 ~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 206 (229)
T 3iug_A 127 DEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSV 206 (229)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC-------------------CHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCcccccccchHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998632
Q ss_pred -hHHHHHHhhhhcCCCC
Q psy9944 141 -TTVIVVTYYQVKGPSS 156 (183)
Q Consensus 141 -~~~~~~~~~~~f~~~~ 156 (183)
.+.+++++..+|+.+.
T Consensus 207 vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 207 VVEFILNHVDVLFSGRI 223 (229)
T ss_dssp HHHHHHHTHHHHTC---
T ss_pred HHHHHHHhHHHhCCCcH
Confidence 2356688888888754
No 9
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=3.2e-37 Score=238.26 Aligned_cols=134 Identities=31% Similarity=0.497 Sum_probs=122.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..+++++++.+++|. ..++ +. .|+|++|++||.|||+||+||+|.++|+.|+++.+. +.
T Consensus 39 ~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~-~~~~--~~~~d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~~--~~ 113 (198)
T 1tx4_A 39 AHALTTEGIFRRSANTQVVREVQQKYNMGL-PVDF--DQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI--DE 113 (198)
T ss_dssp HHCTTCTTTTTSCCCHHHHHHHHHHHHTTC-CCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS--CG
T ss_pred HhCCCCCCeeecCCcHHHHHHHHHHHhCCC-CCCc--cccccchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHcC--CH
Confidence 369999999999999999999999999987 2333 23 389999999999999999999999999999998764 56
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
++++..++.++.+||+.|+.+|++|+.||++|++|++.||||++|||+||||+|+++++.
T Consensus 114 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~P~Ll~~~~~ 173 (198)
T 1tx4_A 114 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDA 173 (198)
T ss_dssp GGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHhhhcccccCCCCc
Confidence 789999999999999999999999999999999999999999999999999999999754
No 10
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=235.67 Aligned_cols=133 Identities=29% Similarity=0.427 Sum_probs=122.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..++++|++.+++|....++ ..+ |+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus 30 ~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~--~~~~d~h~va~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~ 106 (201)
T 2ovj_A 30 QRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLL--SKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEI-TDE 106 (201)
T ss_dssp HHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCG--GGCCCHHHHHHHHHHHHHTSSSCTTCTTTHHHHHHHHHC-SSH
T ss_pred HhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccc--cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCH
Confidence 36999999999999999999999999998633332 244 99999999999999999999999999999999988 788
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCC
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVE 138 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~ 138 (183)
++++..++.++.+||+.|+.+|.+|+.||++|+++ +.||||++|||+||||+|++++
T Consensus 107 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~~ 163 (201)
T 2ovj_A 107 DNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHA 163 (201)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCCC
Confidence 89999999999999999999999999999999996 6899999999999999999875
No 11
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.6e-36 Score=241.01 Aligned_cols=150 Identities=29% Similarity=0.460 Sum_probs=131.7
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCc-CHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQY-TEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~-d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+++|||||++|+..+++++++.+++|. ..++ +.+ |+|++|++||.|||+||+||+|.++|+.|+++.+. +.
T Consensus 75 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~-~~~~--~~~~dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~--~~ 149 (242)
T 1ow3_A 75 AHALTTEGIFRRSANTQVVREVQQKYNMGL-PVDF--DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI--DE 149 (242)
T ss_dssp HHCTTCTTTTTSCCCHHHHHHHHHHHHTTC-CCCG--GGSSCTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS--CG
T ss_pred HcCCCCCceeeeCCcHHHHHHHHHHHhcCC-CCCc--ccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC--CH
Confidence 369999999999999999999999999986 2333 333 89999999999999999999999999999998764 56
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh-------------hHHHHHH
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW-------------TTVIVVT 147 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~-------------~~~~~~~ 147 (183)
++++..++.++.+||+.|+.+|.+|+.||++|++|++.||||+.|||+||||+|+++++. .+.++++
T Consensus 150 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~ 229 (242)
T 1ow3_A 150 SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINTFTKFLLDH 229 (242)
T ss_dssp GGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999998753 2457788
Q ss_pred hhhhcCCCC
Q psy9944 148 YYQVKGPSS 156 (183)
Q Consensus 148 ~~~~f~~~~ 156 (183)
|..+|+...
T Consensus 230 ~~~iF~~~~ 238 (242)
T 1ow3_A 230 QGELFPSPD 238 (242)
T ss_dssp HHHHC----
T ss_pred HHHHcCCCC
Confidence 888997653
No 12
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=236.88 Aligned_cols=137 Identities=23% Similarity=0.346 Sum_probs=126.3
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..++++|++.++.++...+ ++.+|+|++|++||.|||+||+||+|.++|+.|+.+.+. .+.+
T Consensus 49 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~--~~~~~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~-~~~~ 125 (228)
T 3kuq_A 49 NHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVN--YEGQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQY-VPKD 125 (228)
T ss_dssp HHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCC--CTTCCHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHH-SCGG
T ss_pred HhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCC--cccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCHH
Confidence 4699999999999999999999999987653333 456799999999999999999999999999999999887 7778
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
+++..++.++.+||+.|+.+|++|+.||++|+.+++.||||+.|||+||||+|++++...
T Consensus 126 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~ 185 (228)
T 3kuq_A 126 QRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK 185 (228)
T ss_dssp GHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHHhhhhcCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999997553
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=235.54 Aligned_cols=148 Identities=26% Similarity=0.376 Sum_probs=122.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..++++|++.++.|... ....|+|++|++||.|||+||+||+|.++|+.|+.+.+. +.+
T Consensus 95 e~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~----~~~~~~~~va~lLK~fLReLPePLl~~~ly~~~~~~~~~--~~~ 168 (271)
T 3eap_A 95 EDHIHTEGLFRKSGSVIRLKALKNKVDHGEGC----LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQL--GTE 168 (271)
T ss_dssp GGGTTC--------CHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHSSSCSSCGGGHHHHHHHTTS--CHH
T ss_pred HhCCCCCCeeeeCCCHHHHHHHHHHHHcCCCC----cccccHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHH--hHH
Confidence 46899999999999999999999999998732 235699999999999999999999999999999999885 556
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCC------------------hhHH
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVEN------------------WTTV 143 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~------------------~~~~ 143 (183)
++...++.++..||+.|+.+|.+|+.||++|+++++.||||+.|||+||||+|+++++ ..+.
T Consensus 169 ~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~vve~ 248 (271)
T 3eap_A 169 EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQT 248 (271)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCCCCccchhhhHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999999999999999999999975 2346
Q ss_pred HHHHhhhhcCCC
Q psy9944 144 IVVTYYQVKGPS 155 (183)
Q Consensus 144 ~~~~~~~~f~~~ 155 (183)
+++++..+|.-+
T Consensus 249 LI~~~~~IF~vp 260 (271)
T 3eap_A 249 LIDYASDIGRVP 260 (271)
T ss_dssp HHHTGGGTTCCC
T ss_pred HHHhHHHHhCCC
Confidence 678888888654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=2.3e-34 Score=247.50 Aligned_cols=138 Identities=30% Similarity=0.477 Sum_probs=127.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECAT 80 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~ 80 (183)
++|+.+|||||++|+..++++|++.+|.+....++.... .|+|++|++||.|||+||+||+|.++|+.|+++.+. .+.
T Consensus 298 ~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~lLK~flReLPePLi~~~ly~~~~~~~~~-~~~ 376 (463)
T 3cxl_A 298 SRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKI-MDP 376 (463)
T ss_dssp HHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHC-CCH
T ss_pred hcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhc-CCH
Confidence 369999999999999999999999999865444554322 499999999999999999999999999999999988 888
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
++++..++.++..||+.|+.+|.+|+.||++|+.+++.||||+.|||+||||+|+++++.
T Consensus 377 ~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~ 436 (463)
T 3cxl_A 377 DEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPEL 436 (463)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999998753
No 15
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=4.7e-32 Score=226.82 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=116.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+..++++|++.++.|.. ..+ ..|+|++|++||.|||+||+||+|.++|+.|+++.+.
T Consensus 212 ~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~-~~~---~~dvh~va~lLK~fLReLPePLi~~~ly~~~~~~~~~----- 282 (366)
T 3qis_A 212 KYACHQEDLFQTPGMQEELQQIIDCLDTSIP-ETI---PGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD----- 282 (366)
T ss_dssp HHCTTCTTTTTSCCCHHHHHHHHHHHHHCCC-SSC---CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHHHHHTTC-----
T ss_pred hcCCCCCCeEeCCCCHHHHHHHHHHHcCCCC-Ccc---ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHhhh-----
Confidence 4799999999999999999999999999863 222 2399999999999999999999999999999998875
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCChh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWT 141 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~~ 141 (183)
...++.++.+||+.|+.+|.||+.||++|+.|++.|+||++|||+||||+|+|+++..
T Consensus 283 --~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~~~ 340 (366)
T 3qis_A 283 --PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNL 340 (366)
T ss_dssp --HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC--
T ss_pred --HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCCcc
Confidence 2457889999999999999999999999999999999999999999999999998543
No 16
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.97 E-value=4.7e-33 Score=217.16 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=102.8
Q ss_pred CCCCCCCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHH
Q psy9944 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATE 81 (183)
Q Consensus 2 ~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~ 81 (183)
++|+.+|||||++|+. +++ +... .+++.+|+|++|++||.|||+||+||+|.++|+.|+++.+. .+..
T Consensus 53 ~~Gl~~eGIfR~sG~~-----lr~----~~~~--~dl~~~dvh~va~lLK~flReLPePLi~~~ly~~~i~~~~~-~~~~ 120 (214)
T 2xs6_A 53 RTGLDSESHYRPELPA-----PRT----DWSL--SDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALRE-AAGP 120 (214)
T ss_dssp HHCTTCSGGGCCSCCC-----CCC----CCCC--TTGGGCCHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHC-C--C
T ss_pred HhCCCCCCCeeeCHHH-----HHh----cccc--CCCccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhc-CCHH
Confidence 4699999999999999 333 1112 23345799999999999999999999999999999999886 3333
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccccCCCCCh
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENW 140 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~L~~~~~~ 140 (183)
++.. .++.+||+.|+.+|+||+.||++|+++++.||||+.|||+||||+|+|+++.
T Consensus 121 ~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~ 176 (214)
T 2xs6_A 121 VGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPP 176 (214)
T ss_dssp CGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHhhhhcCCccc
Confidence 3333 6889999999999999999999999999999999999999999999999864
No 17
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=49.88 E-value=16 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChh-HHHHHHHHHHHHHHH
Q psy9944 44 HDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPI-HYVTVRKLMGHLYFI 112 (183)
Q Consensus 44 ~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~-~~~~L~~L~~~l~~v 112 (183)
..+...|+.+.+++-..++..+-+..+......+.+.+.....+..++..++.. .+........+|++|
T Consensus 59 ~~a~e~L~~~C~~~lk~iiG~e~~~eLk~m~~sg~~~e~l~~Kv~e~i~~i~dE~kk~~ae~~~~~CkkI 128 (134)
T 2xv9_A 59 KEATEHLKGGCREILKHVVGEEKAAELKNLKDSGASKEELKAKVEEALHAVTDEEKKQYIADFGPACKKI 128 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Confidence 356678888888888888999999999998877688889999999999999999 588888888888888
No 18
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=46.25 E-value=34 Score=21.30 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=32.5
Q ss_pred CHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHH
Q psy9944 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106 (183)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~ 106 (183)
+.+.|...++-...+.+..+....+++.+.+++...+..+.-++
T Consensus 19 s~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l 62 (77)
T 1ccd_A 19 SESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLT 62 (77)
T ss_dssp CHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 77778777776665344456778889999999999888765544
No 19
>4h5l_A Nucleoprotein; nucleocapsid protein, N protein, RNA binding, RNP, viral protein; 2.75A {Toscana virus}
Probab=43.01 E-value=51 Score=25.50 Aligned_cols=101 Identities=8% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCCCCCHHhHHHHHHHhccCCCHHHHHHHHHHHHHhh
Q psy9944 15 GSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKL 94 (183)
Q Consensus 15 g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~L 94 (183)
.+...+..+.+.|... .+|++.|-..+|.-=....+..- .+....++-..- |=+....+..++
T Consensus 18 ~d~~~i~~~v~~f~Yq---------GFDa~~vi~~l~erg~~~g~~~~-~D~k~mIVl~lt-------RGNk~~km~~km 80 (253)
T 4h5l_A 18 ADSGTINAWVNEFAYQ---------GFDPKRIVQLVKERGTAKGRDWK-KDVKMMIVLNLV-------RGNKPEAMMKKM 80 (253)
T ss_dssp CCHHHHHHHHHHHSBC---------SSCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHH-------HCSCHHHHHHTS
T ss_pred ccHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHhccchhhHH-HhHHHHhhhhhh-------cCCCHHHHHHHh
Confidence 3555666666655432 45888877777754333322211 122222211111 114456788889
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 95 HPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 95 p~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
.+.-..++..|+....-+......+..|+..+|.+|++
T Consensus 81 s~~Gk~~~~~Li~~Y~Lk~~~~~r~~lTLsRVAa~fa~ 118 (253)
T 4h5l_A 81 SEKGASIVANLISVYQLKEGNPGRDTITLSRVSAAFVP 118 (253)
T ss_dssp CHHHHHHHHHHHHHHTBCSSSCCTTCBCHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCCcccccHHHHHHHhhH
Confidence 99999999999999888888778889999999999986
No 20
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=37.84 E-value=43 Score=21.35 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHH
Q psy9944 16 STTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFF 54 (183)
Q Consensus 16 ~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fL 54 (183)
+..+|.+|+..+..|.+ ..|+..+|.-+..|+
T Consensus 56 r~~kV~~iK~aI~~GtY-------~vd~~~iA~kml~~~ 87 (88)
T 1rp3_B 56 LEKKVKELKEKIEKGEY-------EVSDEKVVKGLIEFF 87 (88)
T ss_dssp HHHHHHHHHHHHHTTCC-------CCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-------CCCHHHHHHHHHHHh
Confidence 45679999999999974 347788887665554
No 21
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.89 E-value=81 Score=19.51 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
.....+..++..||+..+.+|.... ...|+...+|..+|-
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~-----------~~g~s~~eIA~~lgi 65 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSY-----------YRGWSTAQIATDLGI 65 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH-----------TSCCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HcCCCHHHHHHHHCc
Confidence 3456788899999999999885432 356788888887763
No 22
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=32.77 E-value=43 Score=22.04 Aligned_cols=42 Identities=5% Similarity=-0.042 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhc
Q psy9944 84 VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWG 131 (183)
Q Consensus 84 ~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~ 131 (183)
...++.....|++..+.+..|++.+...+.. |+...||.--+
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil~~~~~~~~------~si~elA~~~~ 46 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFILNYPHKVVN------MTSQEIANQLE 46 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHCHHHHTT------CCHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhCHHHHHH------CCHHHHHHHHC
Confidence 4567778889999999999999999887765 78888885543
No 23
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=32.43 E-value=55 Score=21.56 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhh
Q psy9944 85 HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIW 130 (183)
Q Consensus 85 ~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f 130 (183)
..++.....|++..+.+..|++.+...+.. ||...||.--
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~------~si~elA~~~ 49 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIE------STVNEISALA 49 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHT------CCHHHHHHHT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHh------cCHHHHHHHH
Confidence 456667788999999999999999888876 6777777543
No 24
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=32.38 E-value=32 Score=21.35 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p 60 (183)
.+|-|.+.|... +..+.+.+... +..+ +..++++++...|..+|..
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~-----l~~~--~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE-----FSDE--EFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC-----CCTT--TCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC-----CCCC--CCcCHHHHHHHHhCcCCCC
Confidence 467888888654 66777777532 2222 5679999999999999863
No 25
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=27.31 E-value=49 Score=18.99 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 82 DKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 82 ~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
+....+..++..||+..+.++.... ...++...+|..+|-
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~-----------~~g~s~~eIA~~lgi 43 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQ-----------LLGLSYADAAAVCGC 43 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHH-----------TSCCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----------HcCCCHHHHHHHHCc
Confidence 4456678888999999998875432 246888888888864
No 26
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=26.53 E-value=38 Score=20.91 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=32.0
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCC
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~ 59 (183)
.+|-|.+.|... +..+.+.+... +..+ +..++++++...|..+|+
T Consensus 7 ~dg~~~v~g~~~-l~dl~~~l~~~-----l~~~--~~~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 7 SDGSMIIDGSAN-LRDLNKMFNWE-----LDTE--DARTFNGLILEHLEEIPD 51 (81)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC-----CCCS--SCSBHHHHHHHHCSSCCC
T ss_pred CCCEEEEEeeCC-HHHHHHHhCCC-----CCCC--CCccHHHHHHHHhCCCCC
Confidence 467888888553 66777777542 2222 667999999999999885
No 27
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=26.06 E-value=1.1e+02 Score=18.40 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=32.5
Q ss_pred CHHhHHHHHHHhccCCCHHHHHHHHHHHHHhhChhHHHHHHHHH
Q psy9944 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106 (183)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~Lp~~~~~~L~~L~ 106 (183)
+.+.|...++-...+.+..+....+++.+.+++...|..+.-++
T Consensus 17 s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l 60 (70)
T 1utg_A 17 TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLT 60 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67778877777765344456778889999999999887765544
No 28
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.15 E-value=1.2e+02 Score=21.80 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 84 VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 84 ~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
...+..++..||+..+.++.... ...|+...+|..+|-
T Consensus 178 ~~~l~~~l~~L~~~~r~vl~l~~-----------~~g~s~~EIA~~lgi 215 (239)
T 1rp3_A 178 TEKVKEAVSKLPEREKLVIQLIF-----------YEELPAKEVAKILET 215 (239)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH-----------TSCCCHHHHHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-----------hcCCCHHHHHHHhCC
Confidence 45678889999999999885432 357899999988873
No 29
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=23.12 E-value=43 Score=21.16 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p 60 (183)
+|-|.+.|.. .+..+.+.+... +..+ +..++++++...|..+|..
T Consensus 17 dg~~~v~G~~-~l~dl~~~l~~~-----l~~~--~~dTlgG~i~~~lg~iP~~ 61 (91)
T 2pli_A 17 SERWRIHAAT-EIEDINTFFGTE-----YSSE--EADTIGGLVIQELGHLPVR 61 (91)
T ss_dssp TTEEEEETTC-BHHHHHHHHCCC-----CCCS--SCCBHHHHHHHHHSSCCCT
T ss_pred CCEEEEEcCC-CHHHHHHHhCCC-----CCCC--CCccHHHHHHHHhCCCCCC
Confidence 5778888743 455666666442 2222 5679999999999999863
No 30
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=22.67 E-value=45 Score=21.09 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p 60 (183)
+|-|.+.|.. .+..+.+.+... +..+ +..++++++...|..+|..
T Consensus 15 dg~~~v~G~~-~l~dl~~~l~~~-----l~~~--~~~TlgG~i~~~lg~iP~~ 59 (93)
T 2r2z_A 15 DNEYLVQGRM-LIDEFNEVFETD-----LHMS--DVDTMAGYLITALGTIPDE 59 (93)
T ss_dssp TTEEEEETTS-BHHHHHHHHTCC-----CCCT--TCCBHHHHHHHHHSSCCCT
T ss_pred CCEEEEECCC-CHHHHHHHhCCC-----CCCC--CcccHHHHHHHHhCCCCCC
Confidence 5778888743 455666666542 2222 5679999999999999863
No 31
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.04 E-value=1.4e+02 Score=19.12 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhccc
Q psy9944 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGPT 133 (183)
Q Consensus 81 ~~~~~~l~~ll~~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P~ 133 (183)
.+....+..++..||+..+.++..-.. + .....||...+|..+|=+
T Consensus 7 ~el~~~l~~aL~~Lp~reR~Vi~Lry~-l------~~~e~~s~~EIA~~lgiS 52 (99)
T 3t72_q 7 ESLRAATHDVLAGLTAREAKVLRMRFG-I------DMNTDYTLEEVGKQFDVT 52 (99)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-c------CCCCCCCHHHHHHHHCcC
Confidence 345577889999999999998854321 1 122568888888887644
No 32
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=21.96 E-value=52 Score=20.67 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCC
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~ 59 (183)
.+|-|.+.|.. .+..+.+.+... +..+.-+..++++++...|..+|.
T Consensus 13 ~dg~~~v~G~~-~l~dl~~~l~~~-----l~~~~~~~~TlgG~i~~~lg~iP~ 59 (90)
T 2p13_A 13 ADGTWLMDGWI-SIRKASNLLEHD-----LVDEAERYSTLGGYLLWQFGYIPA 59 (90)
T ss_dssp TTSCEEEETTS-BHHHHHHHHTSC-----CCCTTCCCCBHHHHHHHHHSSCCC
T ss_pred CCCEEEEECcC-CHHHHHHHHCCC-----CCCcCCCCccHHHHHHHHhCCCCC
Confidence 35778888843 456676666542 221102578999999999999986
No 33
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=21.44 E-value=48 Score=20.70 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCC
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~ 59 (183)
+|-|.+.|.. .++.+.+.+... +..+ +..++++++..-|..+|.
T Consensus 7 dg~~~v~G~~-~l~dl~~~l~~~-----l~~~--~~dTl~G~v~~~lg~iP~ 50 (87)
T 2rk5_A 7 DNTYIVLGTM-TLNDFNEYFETD-----LESD--NVDTIAGFYLTGVGTIPS 50 (87)
T ss_dssp TTEEEEETTS-BHHHHHHHHTCC-----CCCT--TCCBHHHHHHHHHCSCCC
T ss_pred CCEEEEEccC-CHHHHHHHhCCC-----CCCC--CcccHHHHHHHHhCcCCC
Confidence 5778888743 455666666542 2222 567999999999999986
No 34
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=21.24 E-value=57 Score=20.24 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCccccCCCHHHHHHHHHHHhccCccccCCcCC-cCHHHHHHHHHHHHhhCCCC
Q psy9944 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQ-YTEHDVSTVLKRFFRDLPEP 60 (183)
Q Consensus 7 ~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~-~d~~~va~~lK~fLr~Lp~p 60 (183)
.+|-|.+.|.. .+..+.+.+.... +..+. -+..++++++...|..+|..
T Consensus 7 ~dg~~~v~G~~-~l~dl~~~l~~~~----l~~~~~~~~~Tl~G~i~~~lg~iP~~ 56 (86)
T 2pls_A 7 EDGSWLLDGLI-AVPELKDTLGLRA----VPEEEKGVYHTLSGMIMWLLGRLPQT 56 (86)
T ss_dssp TTSCEEEETTC-BHHHHHHHHTCSC----CTTTTSCSCCBHHHHHHHHHTSCCCT
T ss_pred CCCeEEEEccc-CHHHHHHHhCCCc----CCCccCCCcccHHHHHHHHhCCCCCC
Confidence 36788888843 4566777675431 22100 25789999999999999863
No 35
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=21.07 E-value=49 Score=21.61 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCccccCCCHHHHHHHHHHHhccCccccCCcCCcCHHHHHHHHHHHHhhCCCC
Q psy9944 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60 (183)
Q Consensus 8 eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~d~~~va~~lK~fLr~Lp~p 60 (183)
+|-|++.|.. .++.+.+.+... +..+ +..++++++-..|..+|..
T Consensus 11 dg~~~v~G~~-~l~dl~~~lg~~-----l~~e--~~dTlgGli~~~lg~iP~~ 55 (101)
T 2p3h_A 11 PDKWLIDGDT-PLDEVERAIGYE-----LPEG--DYETISGLLFDHANALLKT 55 (101)
T ss_dssp TTEEEEETTC-BHHHHHHHHTSC-----CCCS--SCCBHHHHHHHHHCSCCCT
T ss_pred CCEEEEEccC-CHHHHHHHhCCC-----CCCC--CCccHHHHHHHHhCCCCCC
Confidence 5778888843 455666666542 2222 6789999999999999863
No 36
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.11 E-value=1.5e+02 Score=19.64 Aligned_cols=39 Identities=10% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH-hhChhHHHHHHHHHHHHHHHHhhcccCCCCchhhhHhhcc
Q psy9944 82 DKVHIYRSLLE-KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132 (183)
Q Consensus 82 ~~~~~l~~ll~-~Lp~~~~~~L~~L~~~l~~v~~~~~~nkM~~~nLa~~f~P 132 (183)
+....+...+. .||+..+.++. . ++ ..|+...+|..+|-
T Consensus 97 e~~~~l~~~l~~~L~~~~r~v~~-~--~~---------~g~s~~EIA~~lgi 136 (164)
T 3mzy_A 97 EEIEEFKKFSENNFSKFEKEVLT-Y--LI---------RGYSYREIATILSK 136 (164)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-H--HT---------TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHH-H--HH---------cCCCHHHHHHHHCC
Confidence 34456778888 99999999886 2 11 56888888888873
Done!