RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9944
(183 letters)
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
ARAPs. ARAPs (also known as centaurin deltas) contain,
besides the RhoGAP domain, an Arf GAP, ankyrin repeat
ras-associating, and PH domains. Since their ArfGAP
activity is PIP3-dependent, ARAPs are considered
integration points for phosphoinositide, Arf and Rho
signaling. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 184
Score = 178 bits (453), Expect = 2e-57
Identities = 68/133 (51%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G MSEGIYR++G ++V KLL FR+DA VQL +YT HDV+ VLKRF RDLP+PLL+
Sbjct: 30 GLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLT 89
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
+ELH AA +E E ++ Y+ L+ +L PI+ T++ L+GHLY +Q+ D N+MSV
Sbjct: 90 SELHAEWIEAAELENKDE-RIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSV 148
Query: 124 ENLASIWGPTLMH 136
NLA ++GPTL
Sbjct: 149 HNLALVFGPTLFQ 161
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain. GTPase activator proteins
towards Rho/Rac/Cdc42-like small GTPases.
Length = 152
Score = 142 bits (360), Expect = 8e-44
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGI+R SGS + + +L F E+ H V+++LK F R+LPEPLL+
Sbjct: 15 GLDTEGIFRVSGSASRIKELREAFDSGEDVDLDL-EEEDVHVVASLLKLFLRELPEPLLT 73
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
EL+ AA E E++V R LL KL P + T+R L+ HL + + + NKM+
Sbjct: 74 FELYEEFIEAAKSEDE-EERVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNA 132
Query: 124 ENLASIWGPTLMH 136
NLA ++GPTL+
Sbjct: 133 HNLAIVFGPTLLR 145
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases.
GTPase activator proteins towards Rho/Rac/Cdc42-like
small GTPases. etter domain limits and outliers.
Length = 174
Score = 126 bits (320), Expect = 2e-37
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+EGIYR SGS + V +L F L +Y HDV+ +LK F R+LPEPL++ EL
Sbjct: 21 TEGIYRVSGSKSRVKELRDAFDSG-PDPDLDLSEYDVHDVAGLLKLFLRELPEPLITYEL 79
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
+ AA +E TE ++ R LL L P + T+R L+ HL + E + NKM+ NL
Sbjct: 80 YEEFIEAAKLEDETE-RLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNL 138
Query: 127 ASIWGPTLMH 136
A ++GPTL+
Sbjct: 139 AIVFGPTLLR 148
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for
Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small
GTPases. Small GTPases (G proteins) cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when bound
to GDP. The Rho family of small G proteins, which
includes Cdc42Hs, activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. G proteins generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude. The
RhoGAPs are one of the major classes of regulators of
Rho G proteins.
Length = 169
Score = 118 bits (298), Expect = 3e-34
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPL 61
G +EGI+R SGS + + +L +F D + E Y HDV+++LK + R+LPEPL
Sbjct: 13 KNGLNTEGIFRVSGSASKIEELKKKF--DRGEDIDDLEDYDVHDVASLLKLYLRELPEPL 70
Query: 62 LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
+ EL+ A +E E + + LL+ L P + ++ L+ L+ I + + NKM
Sbjct: 71 IPFELYDEFIELAKIEDEEERIEAL-KELLKSLPPENRDLLKYLLKLLHKISQNSEVNKM 129
Query: 122 SVENLASIWGPTLMH 136
+ NLA ++ PTL+
Sbjct: 130 TASNLAIVFAPTLLR 144
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein
for Rho3 and Rho4 and plays a role in low-pH response.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 110 bits (277), Expect = 6e-31
Identities = 59/134 (44%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEPLLS 63
EGIYR SG+ + V+KL F +D V L + E D+ +V LK FFR+LPEPLL+
Sbjct: 34 LEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPEPLLT 93
Query: 64 TELHVHLCNAAGMECAT--EDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
L AA +E + D +H L+ L +Y T+R LM HL I+E + N+M
Sbjct: 94 KALSREFIEAAKIEDESRRRDALH---GLINDLPDANYATLRALMFHLARIKEHESVNRM 150
Query: 122 SVENLASIWGPTLM 135
SV NLA IWGPTLM
Sbjct: 151 SVNNLAIIWGPTLM 164
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of GMIP (Gem
interacting protein). GMIP plays important roles in
neurite growth and axonal guidance, and interacts with
Gem, a member of the RGK subfamily of the Ras small
GTPase superfamily, through the N-terminal half of the
protein. GMIP contains a C-terminal RhoGAP domain. GMIP
inhibits RhoA function, but is inactive towards Rac1 and
Cdc41. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 98.7 bits (246), Expect = 4e-26
Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL----- 62
+GIYR SGS V KL F V LS ++ HD+++VLK F ++LPEP+L
Sbjct: 35 QGIYRISGSKARVEKLCQAFENGRDLVDLS--GHSPHDITSVLKHFLKELPEPVLPFQLY 92
Query: 63 ------STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK 116
+ EL AA E+ + + LL +L +Y T+R LM HLY + E+
Sbjct: 93 DDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERF 152
Query: 117 DRNKMSVENLASIWGPTLM 135
+ NKMS NL ++GPTL+
Sbjct: 153 EDNKMSPNNLGIVFGPTLL 171
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of GMIP (Gem interacting protein) and
PARG1 (PTPL1-associated RhoGAP1). GMIP plays important
roles in neurite growth and axonal guidance, and
interacts with Gem, a member of the RGK subfamily of the
Ras small GTPase superfamily, through the N-terminal
half of the protein. GMIP contains a C-terminal RhoGAP
domain. GMIP inhibits RhoA function, but is inactive
towards Rac1 and Cdc41. PARG1 interacts with Rap2, also
a member of the Ras small GTPase superfamily whose exact
function is unknown, and shows strong preference for
Rho. Small GTPases cluster into distinct families, and
all act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 203
Score = 97.5 bits (243), Expect = 1e-25
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 15/141 (10%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
+GIYR SGS V KL F V+LS + + HD+S+VLK F R LPEPL+ L+
Sbjct: 35 QGIYRVSGSKARVEKLCQAFENGKDLVELS--ELSPHDISSVLKLFLRQLPEPLILFRLY 92
Query: 68 VHL-------------CNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQE 114
A + + LL +L +Y T++ L+ HLY + E
Sbjct: 93 NDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAE 152
Query: 115 KKDRNKMSVENLASIWGPTLM 135
+ + NKMS NL ++GPTL+
Sbjct: 153 QFEENKMSPNNLGIVFGPTLI 173
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of p190-like
proteins. p190, also named RhoGAP5, plays a role in
neuritogenesis and axon branch stability. p190 shows a
preference for Rho, over Rac and Cdc42, and consists of
an N-terminal GTPase domain and a C-terminal GAP domain.
The central portion of p190 contains important
regulatory phosphorylation sites. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 185
Score = 93.3 bits (232), Expect = 3e-24
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
G +EGIYR SG+ T++ L +F QD + L + +T + V+ LK FF +LP+PL+
Sbjct: 29 TGLETEGIYRVSGNKTHLDSLQKQFDQDH-NLDLVSKDFTVNAVAGALKSFFSELPDPLI 87
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
+H+ L AA + + ++H + LL+K P ++ + ++ HL + + N M+
Sbjct: 88 PYSMHLELVEAAKINDREQ-RLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMT 146
Query: 123 VENLASIWGPTLM 135
ENL+ + PTLM
Sbjct: 147 SENLSICFWPTLM 159
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in class IX myosins. Class IX
myosins contain a characteristic head domain, a neck
domain, a tail domain which contains a C6H2-zinc binding
motif and a RhoGAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 92.5 bits (230), Expect = 7e-24
Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGIYR+SGS + +L D V L E Y H +++VLK++ R+LPEPL++
Sbjct: 30 GLYTEGIYRKSGSANKIKELRQGLDTDPDSVNL--EDYPIHVITSVLKQWLRELPEPLMT 87
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
EL+ + A +E E +Y S+LE+L + T+ +L+ HL + +++ N+MS
Sbjct: 88 FELYENFLRAMELEEKQERVRALY-SVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSA 146
Query: 124 ENLASIWGPTLM 135
LA ++ P ++
Sbjct: 147 NALAIVFAPCIL 158
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP21-like proteins. ArhGAP21 is a multi-domain
protein, containing RhoGAP, PH and PDZ domains, and is
believed to play a role in the organization of the
cell-cell junction complex. It has been shown to
function as a GAP of Cdc42 and RhoA, and to interact
with alpha-catenin and Arf6. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 196
Score = 91.3 bits (227), Expect = 2e-23
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTELH 67
GIYR G+ +S L E + + + L ++ + + VS++LK FFR LPEPL + EL+
Sbjct: 38 GIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELY 97
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
A +E E ++ R L+ L HY T++ L+ HL + + + NKM NLA
Sbjct: 98 PDFIEANRIEDPVE-RLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLA 156
Query: 128 SIWGPTLMHVENWTTVIVVT 147
++GPTL+ + +VT
Sbjct: 157 IVFGPTLVRTSDDNMETMVT 176
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP
domain and a C-terminal proline-rich region, and it is
active on both Cdc42 and Rac1 but not RhoA. CdGAP is
recruited to focal adhesions via the interaction with
the scaffold protein actopaxin (alpha-parvin). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 195
Score = 89.1 bits (221), Expect = 2e-22
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPLLSTE 65
+GIYR SG +N+ +L EF + L+++ Y + H VS++ K +FR+LP PLL+ +
Sbjct: 36 DGIYRLSGIASNIQRLRHEFDSEQ-IPDLTKDVYIQDIHSVSSLCKLYFRELPNPLLTYQ 94
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
L+ A E+++ ++++L P HY T+ LM HL + + M +N
Sbjct: 95 LYEKFSEAVSAASD-EERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKN 153
Query: 126 LASIWGPTLM 135
LA +W P L+
Sbjct: 154 LAIVWAPNLL 163
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP]
protein for Rho-like small GTPases) domain of fungal
BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and
is specifically involved in the control of the initial
assembly of the septin ring in yeast bud formation.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 190
Score = 83.2 bits (206), Expect = 2e-20
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 6 MSEGIYRRSGSTTNVSKLLAEFRQDAWQVQL--SREQYTEHDVSTVLKRFFRDLPEPLLS 63
EGI+R SGS + + +L F + V L S H V+ +LK + R+LP +L
Sbjct: 40 YEEGIFRLSGSASVIKQLKERF-NTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPTLILG 98
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
ELH + + L+ +L +Y + L L I E D NKM++
Sbjct: 99 GELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNL 158
Query: 124 ENLASIWGPTL 134
N+ ++ PTL
Sbjct: 159 RNVCIVFSPTL 169
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP27 (also called CAMGAP1),
ARHGAP15, 12 and 9-like proteins; This subgroup of
ARHGAPs are multidomain proteins that contain RhoGAP,
PH, SH3 and WW domains. Most members that are studied
show GAP activity towards Rac1, some additionally show
activity towards Cdc42. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 187
Score = 82.8 bits (205), Expect = 3e-20
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+GIYR SG+ + KL D + H ++ LK FFR+LPEPL L
Sbjct: 34 VDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEPLFPYSL 93
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
A + E +V + L++ L ++ T++ L HL + E ++N+M+ +NL
Sbjct: 94 FNDFVAAIKLSDY-EQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL 152
Query: 127 ASIWGPTLMHVENWTTVIVV-TYYQ 150
A ++GPTL+ E T I V YQ
Sbjct: 153 AIVFGPTLLRPEQETGNIAVHMVYQ 177
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP)
domain for Rho-like GTPases found in GRAF (GTPase
regulator associated with focal adhesion kinase); Graf
is a multi-domain protein, containing SH3 and PH
domains, that binds focal adhesion kinase and influences
cytoskeletal changes mediated by Rho proteins. Graf
exhibits GAP activity toward RhoA and Cdc42, but only
weakly activates Rac1. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 81.3 bits (201), Expect = 2e-19
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 23/141 (16%)
Query: 8 EGIYRRSGSTTNVSKLLA-------------EFRQDAWQVQLSREQYTEHDVSTVLKRFF 54
+G+YR G + V KLL+ + W+++ +++ LK +
Sbjct: 47 QGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIK---------TITSALKTYL 97
Query: 55 RDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQE 114
R+LPEPL++ ELH NAA E E +V+ SL+ KL + + L+ HL + +
Sbjct: 98 RNLPEPLMTYELHNDFINAAKSENL-ESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSD 156
Query: 115 KKDRNKMSVENLASIWGPTLM 135
+N M+V NL ++GPTL+
Sbjct: 157 HSKKNLMTVSNLGVVFGPTLL 177
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXA. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing
neurons. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 79.7 bits (196), Expect = 6e-19
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGIYR+SGST + +L DA V L + Y H +++V K++ RDLP PL++
Sbjct: 30 GLYTEGIYRKSGSTNKIKELRQGLDTDANSVNL--DDYNIHVIASVFKQWLRDLPNPLMT 87
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
EL+ A G++ E +Y S++++L H T+ +L+ HL I +++ N+MS
Sbjct: 88 FELYEEFLRAMGLQERRETVRGVY-SVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSA 146
Query: 124 ENLASIWGPTLMHVENWT 141
LA ++ P ++ + T
Sbjct: 147 NALAIVFAPCILRCPDTT 164
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP6-like proteins. ArhGAP6 shows GAP activity
towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is
often deleted in microphthalmia with linear skin defects
syndrome (MLS); MLS is a severe X-linked developmental
disorder. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 206
Score = 79.8 bits (197), Expect = 6e-19
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
GI+R S V +L EF + V L + HDV+ +LK FFRD+P+PLL EL+
Sbjct: 29 GIFRVGSSKKRVRQLREEFDR-GIDVVLDENH-SVHDVAALLKEFFRDMPDPLLPRELYT 86
Query: 69 HLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEK-KDR--------- 118
A +E ++++ + L+ L P + T+ +L+ L+ + E D
Sbjct: 87 AFIGTALLE--PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVS 144
Query: 119 -NKMSVENLASIWGPTLMHVE 138
NKM+ NLA+I+GP L+H +
Sbjct: 145 GNKMTSLNLATIFGPNLLHKQ 165
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of chimaerins. Chimaerins are a family
of phorbolester- and diacylglycerol-responsive GAPs
specific for the Rho-like GTPase Rac. Chimaerins exist
in two alternative splice forms that each contain a
C-terminal GAP domain, and a central C1 domain which
binds phorbol esters, inducing a conformational change
that activates the protein; one splice form is lacking
the N-terminal Src homology-2 (SH2) domain. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 194
Score = 79.1 bits (195), Expect = 1e-18
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEPLL 62
G SEG+YR SG + + F +D + +S Y + +V T LK +FRDLP P++
Sbjct: 31 GLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIPVI 90
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
+ + + +AA + E ++ L L P HY T+R LM HL + + NKM+
Sbjct: 91 TYDTYPKFIDAAKISNPDE-RLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMN 149
Query: 123 VENLASIWGPTLM 135
ENL ++GPTLM
Sbjct: 150 AENLGIVFGPTLM 162
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of Bcr
(breakpoint cluster region protein)-like proteins. Bcr
is a multidomain protein with a variety of enzymatic
functions. It contains a RhoGAP and a Rho GEF domain, a
Ser/Thr kinase domain, an N-terminal oligomerization
domain, and a C-terminal PDZ binding domain, in addition
to PH and C2 domains. Bcr is a negative regulator of:
i) RacGTPase, via the Rho GAP domain, ii) the
Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras
binding protein AF-6, and iii) the Wnt signaling pathway
through binding beta-catenin. Bcr can form a complex
with beta-catenin and Tcf1. The Wnt signaling pathway
is involved in cell proliferation, differentiation, and
cell renewal. Bcr was discovered as a fusion partner of
Abl. The Bcr-Abl fusion is characteristic for a large
majority of chronic myelogenous leukemias (CML). Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 196
Score = 76.1 bits (187), Expect = 2e-17
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G GIYR SG T++ L A F + V + + + ++ LK +FR+LPEPL +
Sbjct: 31 GMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYFRELPEPLFT 90
Query: 64 TELHVHLCNAAGME--CATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
EL+ + + A E + +LL L + VT L+ HL + E+++ NKM
Sbjct: 91 DELYPNFAEGIALSDPVAKESCM---LNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKM 147
Query: 122 SVENLASIWGPTLM 135
S+ NLA+++GPTL+
Sbjct: 148 SLHNLATVFGPTLL 161
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of ArhGAP11A-like proteins. The mouse
homolog of human ArhGAP11A has been detected as a gene
exclusively expressed in immature ganglion cells,
potentially playing a role in retinal development. The
exact function of ArhGAP11A is unknown. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 202
Score = 75.6 bits (186), Expect = 2e-17
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+EG++R+SGS +L A+ + DV+ +LK+FFR+LPEPLL +L
Sbjct: 37 TEGLFRKSGSVVRQKELKAKLEGG----EACLSSALPCDVAGLLKQFFRELPEPLLPYDL 92
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYV-TVRKLMGHLYFIQEKKDRNKMSVEN 125
H L A + E K LL L P +V T+R LY + ++ NKM N
Sbjct: 93 HEALLKAQELPTDEERKSATL--LLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSN 150
Query: 126 LASIWGPTLMHVE 138
LA I+ P L E
Sbjct: 151 LAVIFAPNLFQSE 163
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally
cloned as an interaction partner of PTPL1, an
intracellular protein-tyrosine phosphatase. PARG1
interacts with Rap2, also a member of the Ras small
GTPase superfamily whose exact function is unknown, and
shows strong preference for Rho. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 211
Score = 75.2 bits (185), Expect = 5e-17
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
+GIYR +G+ + V KL F V+LS + + HD+S VLK + R LPEPL+ L+
Sbjct: 35 KGIYRVNGAKSRVEKLCQAFENGKDLVELS--ELSPHDISNVLKLYLRQLPEPLILFRLY 92
Query: 68 VHLCNAA---------------------GMECATEDKVHIYRSLLEKLHPIHYVTVRKLM 106
A M + + LL +L +Y T++ L+
Sbjct: 93 NEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLI 152
Query: 107 GHLYFIQEKKDRNKMSVENLASIWGPTLM 135
HL+ + E+ + NKMS NL I+GPTL+
Sbjct: 153 VHLHRVSEQAEENKMSASNLGIIFGPTLI 181
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
Nadrin-like proteins. Nadrin, also named Rich-1, has
been shown to be involved in the regulation of
Ca2+-dependent exocytosis in neurons and recently has
been implicated in tight junction maintenance in
mammalian epithelium. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 203
Score = 74.8 bits (184), Expect = 5e-17
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPL 61
G EG++R G + + +L A DA L +++ H V++ LK + R+LP+PL
Sbjct: 35 GMNEEGLFRVGGGASKLKRLKAAL--DAGTFSLPLDEFYSDPHAVASALKSYLRELPDPL 92
Query: 62 LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
L+ L+ AA E I+R +L KL + +R L+ L + +K D NKM
Sbjct: 93 LTYNLYEDWVQAANKPDEDERLQAIWR-ILNKLPRENRDNLRYLIKFLSKLAQKSDENKM 151
Query: 122 SVENLASIWGPTLM 135
S N+A + P L+
Sbjct: 152 SPSNIAIVLAPNLL 165
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in
SYD-1_like proteins. Syd-1, first identified and best
studied in C.elegans, has been shown to play an
important role in neuronal development by specifying
axonal properties. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 207
Score = 74.0 bits (182), Expect = 1e-16
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVST-VLKRFFRDLPEPLLSTELH 67
G+YR GS +L F +++ V+LS E Y + +V T VLK + R+LPEPL++ +L+
Sbjct: 38 GLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLITPQLY 97
Query: 68 VHLCNAAGMECATEDKV---HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
+ A + D H+ S+++ L T+ L+ HL + +RNKM+ +
Sbjct: 98 EMVLEALAV-ALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQ 156
Query: 125 NLASIWGPTLM 135
NLA +GP LM
Sbjct: 157 NLAVCFGPVLM 167
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP19-like proteins. The function of ArhGAP19 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 208
Score = 74.0 bits (182), Expect = 1e-16
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
EG++R+ G++ +L + L + HD +TVLK F +LPEPLL T H
Sbjct: 27 EGLFRKPGNSARQQELRDLLNSGT-DLDLESGGFHAHDCATVLKGFLGELPEPLL-THAH 84
Query: 68 VH-------LCNA--AGMECATEDKVHIYRS---LLEKLHPIHYVTVRKLMGHLYFIQEK 115
LC G + + DK + + LL L + ++ ++ LY +
Sbjct: 85 YPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKH 144
Query: 116 KDRNKMSVENLASIWGPTLM 135
+D+NKMS +NLA ++ P L+
Sbjct: 145 EDKNKMSADNLALLFTPHLI 164
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in MgcRacGAP proteins. MgcRacGAP
plays an important dual role in cytokinesis: i) it is
part of centralspindlin-complex, together with the
mitotic kinesin MKLP1, which is critical for the
structure of the central spindle by promoting microtuble
bundling. ii) after phosphorylation by aurora B
MgcRacGAP becomes an effective regulator of RhoA and
plays an important role in the assembly of the
contractile ring and the initiation of cytokinesis.
MgcRacGAP-like proteins contain a N-terminal C1-like
domain, and a C-terminal RhoGAP domain. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 193
Score = 73.5 bits (181), Expect = 1e-16
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEP 60
G EG+YR SGS V L +F + LS+ D+ + LK F R L EP
Sbjct: 32 GLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSK-----VDIHVICGCLKDFLRSLKEP 86
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
L++ L AA + + +Y+++ E L + T+ L+ HL + + K
Sbjct: 87 LITFALWKEFMEAAEILDEDNSRAALYQAISE-LPQPNRDTLAFLILHLQRVAQSP-ECK 144
Query: 121 MSVENLASIWGPTLM 135
M + NLA ++GPT++
Sbjct: 145 MDINNLARVFGPTIV 159
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP,
also known as RhoGAP-1, contains a C-terminal RhoGAP
domain and an N-terminal Sec14 domain which binds
phosphatidylinositol 3,4,5-trisphosphate
(PtdIns(3,4,5)P3). It is ubiquitously expressed and
preferentially active on Cdc42. This subgroup also
contains closely related ARHGAP8. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 195
Score = 71.6 bits (176), Expect = 6e-16
Identities = 40/129 (31%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
EGI+RRS +T V ++ ++ + +QY + H + +LK F R+LPEPLL+ +L
Sbjct: 42 EGIFRRSANTQVVKEVQQKYNMG---EPVDFDQYEDVHLPAVILKTFLRELPEPLLTFDL 98
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
+ + ++ E++V + LL+ L +Y ++ L+ L + D+NKM+ NL
Sbjct: 99 YDDIVGFLNVD--KEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNL 156
Query: 127 ASIWGPTLM 135
A ++GP L+
Sbjct: 157 AVVFGPNLL 165
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in srGAPs. srGAPs are components of the intracellular
part of Slit-Robo signalling pathway that is important
for axon guidance and cell migration. srGAPs contain an
N-terminal FCH domain, a central RhoGAP domain and a
C-terminal SH3 domain; this SH3 domain interacts with
the intracellular proline-rich-tail of the Roundabout
receptor (Robo). This interaction with Robo then
activates the rhoGAP domain which in turn inhibits Cdc42
activity. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 188
Score = 69.8 bits (171), Expect = 3e-15
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHD---VSTVLKRFFRDLPEPLLST 64
+GI+R SGS V+ + F + + L+ +Q +HD V+ VLK +FR L PL
Sbjct: 37 QGIFRVSGSQVEVNDIKNAFERG--EDPLADDQ-NDHDINSVAGVLKLYFRGLENPLFPK 93
Query: 65 ELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
E L + +E TE +VH R +L L + +R L L + + D N M
Sbjct: 94 ERFEDLMSCVKLENPTE-RVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPY 152
Query: 125 NLASIWGPTLMHVEN 139
NLA +GPTLM V
Sbjct: 153 NLAICFGPTLMPVPE 167
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391
and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain,
and ANXL repeats. ArhGAP20 is activated by Rap1 and
induces inactivation of Rho, which in turn leads to
neurite outgrowth. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 192
Score = 68.9 bits (169), Expect = 6e-15
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 3 EGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
+G +EGI+RRS + K L E +V L E +++VLK F R++P LL
Sbjct: 29 KGPSTEGIFRRSANAKAC-KELKEKLNSGVEVDLKAE--PVLLLASVLKDFLRNIPGSLL 85
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
S++L+ +A E E+K+ + LL+KL + + ++ L+ L+ I + + NKM
Sbjct: 86 SSDLYEEWMSALDQE-NEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMD 144
Query: 123 VENLASIWGPTLMH 136
NLA P+L+
Sbjct: 145 AFNLAVCIAPSLLW 158
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain present in myosins IXB. Class IX myosins
contain a characteristic head domain, a neck domain and
a tail domain which contains a C6H2-zinc binding motif
and a Rho-GAP domain. Class IX myosins are
single-headed, processive myosins that are partly
cytoplasmic, and partly associated with membranes and
the actin cytoskeleton. Class IX myosins are implicated
in the regulation of neuronal morphogenesis and function
of sensory systems, like the inner ear. There are two
major isoforms, myosin IXA and IXB with several splice
variants, which are both expressed in developing neurons
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 186
Score = 67.3 bits (164), Expect = 3e-14
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGIYR+SGS + +L + D V+L E Y H ++ +LK++ R+LPEPL++
Sbjct: 30 GLYTEGIYRKSGSANRMKELHQLLQADPENVKL--ENYPIHAITGLLKQWLRELPEPLMT 87
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
+ A + E IYR +LE+L ++ T+ +L+ HL + ++D N+MS
Sbjct: 88 FAQYNDFLRAVELPEKQEQLQAIYR-VLEQLPTANHNTLERLIFHLVKVALEEDVNRMSP 146
Query: 124 ENLASIWGPTLM 135
LA ++ P L+
Sbjct: 147 NALAIVFAPCLL 158
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
ArhGAP18-like proteins. The function of ArhGAP18 is
unknown. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 216
Score = 67.4 bits (165), Expect = 3e-14
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +EGI R GS V L E ++ +Q +HD +++LK F R+LP+PLL+
Sbjct: 37 GLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLT 96
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
E ++ + + +D++ L+ L + T++ L+ L + + +++NKM++
Sbjct: 97 VE-YLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNL 155
Query: 124 ENLASIWGPTL 134
N+A I P L
Sbjct: 156 WNVAMIMAPNL 166
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in RalBP1 proteins, also known as RLIP, RLIP76 or
cytocentrin. RalBP1 plays an important role in
endocytosis during interphase. During mitosis, RalBP1
transiently associates with the centromere and has been
shown to play an essential role in the proper assembly
of the mitotic apparatus. RalBP1 is an effector of the
Ral GTPase which itself is an effector of Ras. RalBP1
contains a RhoGAP domain, which shows weak activity
towards Rac1 and Cdc42, but not towards Ral, and a Ral
effector domain binding motif. Small GTPases cluster
into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 182
Score = 64.0 bits (156), Expect = 4e-13
Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
EGIY+ SG + V +L A + + + E+Y V+++LK++ R+LPEPLL+ EL
Sbjct: 39 EGIYKVSGIKSKVDELKAAYNRRE---SPNLEEYEPPTVASLLKQYLRELPEPLLTKELM 95
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
A G E + + R LL++L + + + L+ H+ + ++ KM+++N++
Sbjct: 96 PRFEEACGRPTEAEREQELQR-LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNIS 154
Query: 128 SIWGPTL 134
+ PT+
Sbjct: 155 IVLSPTV 161
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 60.2 bits (146), Expect = 1e-11
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G EG++R +G+ V L +V LS+E +++L+ F ++LPE L+
Sbjct: 35 GLEQEGLFRVNGNAETVEWLRQRL-DSGEEVDLSKEA-DVCSAASLLRLFLQELPEGLIP 92
Query: 64 TELHVHL------CNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKD 117
L + L N R LL++L P++Y ++ L L + +
Sbjct: 93 ASLQIRLMQLYQDYNGEDEFGRK------LRDLLQQLPPVNYSLLKFLCHFLSNVASQHH 146
Query: 118 RNKMSVENLASIWGPTLMHV 137
N+M+ ENLA+++GP + HV
Sbjct: 147 ENRMTAENLAAVFGPDVFHV 166
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP
(GTPase-activator protein [GAP] for Rho-like small
GTPases) domain of fungal SAC7 and BAG7-like proteins.
Both proteins are GTPase activating proteins of Rho1,
but differ functionally in vivo: SAC7, but not BAG7, is
involved in the control of Rho1-mediated activation of
the PKC-MPK1 pathway. Small GTPases cluster into
distinct families, and all act as molecular switches,
active in their GTP-bound form but inactive when
GDP-bound. The Rho family of GTPases activates effectors
involved in a wide variety of developmental processes,
including regulation of cytoskeleton formation, cell
proliferation and the JNK signaling pathway. GTPases
generally have a low intrinsic GTPase hydrolytic
activity but there are family-specific groups of GAPs
that enhance the rate of GTP hydrolysis by several
orders of magnitude.
Length = 225
Score = 55.1 bits (133), Expect = 1e-09
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQ-DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
+ EGI+R +GS+ + +L F + + YT HD ++VL+R+ +LPEPL+
Sbjct: 47 ATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSFDWDGYTVHDAASVLRRYLNNLPEPLV 106
Query: 63 STELH-------------VHLCNAAGMECATEDK---VHIYRSLLEKLHPIHYVTVRKLM 106
+L+ + E D + YR L+ +L ++ + L+
Sbjct: 107 PLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLL 166
Query: 107 GHLYFIQEKKDRNKMSVENLASIWGPTLM 135
L D+N M+ NLA+I+ P ++
Sbjct: 167 DLLAVFARNSDKNLMTASNLAAIFQPGIL 195
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25:
GTPase-activator protein (GAP) domain for Rho-like
GTPases found in ARHGAP22, 24 and 25-like proteins;
longer isoforms of these proteins contain an additional
N-terminal pleckstrin homology (PH) domain. ARHGAP25
(KIA0053) has been identified as a GAP for Rac1 and
Cdc42. Short isoforms (without the PH domain) of
ARHGAP24, called RC-GAP72 and p73RhoGAP, and of
ARHGAP22, called p68RacGAP, has been shown to be
involved in angiogenesis and endothelial cell capillary
formation. Small GTPases cluster into distinct families,
and all act as molecular switches, active in their
GTP-bound form but inactive when GDP-bound. The Rho
family of GTPases activates effectors involved in a wide
variety of developmental processes, including regulation
of cytoskeleton formation, cell proliferation and the
JNK signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 199
Score = 51.7 bits (124), Expect = 1e-08
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G EG++R G V +L F DA + H V+++LK + R+LPEP++
Sbjct: 37 GLKEEGLFRLPGQANLVKQLQDAF--DAGERPSFDSDTDVHTVASLLKLYLRELPEPVIP 94
Query: 64 TELHVHLCNAAGMECATEDKVHI-YRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
+ + A + E+K + L ++Y + + L +Q NKMS
Sbjct: 95 WAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMS 154
Query: 123 VENLASIWGPTLM 135
V+NLA+++GP ++
Sbjct: 155 VQNLATVFGPNIL 167
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain present in the
p85 isoforms of the regulatory subunit of the class IA
PI3K (phosphatidylinositol 3'-kinase). This domain is
also called Bcr (breakpoint cluster region protein)
homology (BH) domain. Class IA PI3Ks are heterodimers,
containing a regulatory subunit (p85) and a catalytic
subunit (p110) and are activated by growth factor
receptor tyrosine kinases (RTKs); this activation is
mediated by the p85 subunit. p85 isoforms, alpha and
beta, contain a C-terminal p110-binding domain flanked
by two SH2 domains, an N-terminal SH3 domain, and a
RhoGAP domain flanked by two proline-rich regions. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 200
Score = 49.5 bits (118), Expect = 1e-07
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQ----DAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLL 62
S +YR T S L E RQ DA V L EQ+ ++ LKR+ DLP P++
Sbjct: 33 SSTLYR-----TQSSSSLTELRQILDCDAASVDL--EQFDVAALADALKRYLLDLPNPVI 85
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLH-PIHY-VTVRKLMGHLYFIQEKKDRNK 120
++ + + A ++++ + R L+ + P Y +T++ L+ H + + + +N
Sbjct: 86 PAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNL 145
Query: 121 MSVENLASIWGPTLM 135
+S LA I+ P L
Sbjct: 146 LSARALAEIFSPLLF 160
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
fungal LRG1-like proteins. Yeast Lrg1p is required for
efficient cell fusion, and mother-daughter cell
separation, possibly through acting as a RhoGAP
specifically regulating 1,3-beta-glucan synthesis. Small
GTPases cluster into distinct families, and all act as
molecular switches, active in their GTP-bound form but
inactive when GDP-bound. The Rho family of GTPases
activates effectors involved in a wide variety of
developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 213
Score = 48.9 bits (117), Expect = 1e-07
Identities = 40/148 (27%), Positives = 80/148 (54%), Gaps = 14/148 (9%)
Query: 1 MSEGSMS-EGIYRRSGSTTNVSKLLAEFRQDAWQVQ-LSREQYTEHDVSTVLKRFFRDLP 58
M + MS EG++R++G+ + +L E ++ +V LS+E ++ +LK+F R+LP
Sbjct: 38 MRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKE--NPVQLAALLKKFLRELP 95
Query: 59 EPLLSTELHVHLCNAAGMECATEDK--VHIYRSLLEKLHPIHYVTVRKLMGHLYFIQ--- 113
+PLL+ +L+ ++ +E E K +H+ LL K H T+ L L ++
Sbjct: 96 DPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKY---HRDTMEVLFSFLKWVSSFS 152
Query: 114 --EKKDRNKMSVENLASIWGPTLMHVEN 139
+++ +KM + NLA++ P +++ +
Sbjct: 153 HIDEETGSKMDIHNLATVITPNILYSKT 180
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein
[GAP] for Rho-like small GTPases) domain of DLC1-like
proteins. DLC1 shows in vitro GAP activity towards RhoA
and CDC42. Beside its C-terminal GAP domain, DLC1 also
contains a SAM (sterile alpha motif) and a START
(StAR-related lipid transfer action) domain. DLC1 has
tumor suppressor activity in cell culture. Small GTPases
cluster into distinct families, and all act as molecular
switches, active in their GTP-bound form but inactive
when GDP-bound. The Rho family of GTPases activates
effectors involved in a wide variety of developmental
processes, including regulation of cytoskeleton
formation, cell proliferation and the JNK signaling
pathway. GTPases generally have a low intrinsic GTPase
hydrolytic activity but there are family-specific groups
of GAPs that enhance the rate of GTP hydrolysis by
several orders of magnitude.
Length = 220
Score = 48.2 bits (115), Expect = 3e-07
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 31/142 (21%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHV 68
G++R+SG + + KL + V + +DV+ +LK++FRDLPEPLL+ +L
Sbjct: 40 GLFRKSGVKSRIQKLRSMIESSTDNVNY--DGQQAYDVADMLKQYFRDLPEPLLTNKL-- 95
Query: 69 HLCNAAGMECATEDKVHIYRSLLEK-----------LHPIHYVTVRKLMGHLYF---IQE 114
+E + I++ + ++ L P V + + LYF +
Sbjct: 96 -----------SETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTL--LYFLSDVAA 142
Query: 115 KKDRNKMSVENLASIWGPTLMH 136
N+M+ NLA P+L H
Sbjct: 143 NSQENQMTATNLAVCLAPSLFH 164
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein
(GAP) domain for Rho-like GTPases found in KIAA1688-like
proteins; KIAA1688 is a protein of unknown function that
contains a RhoGAP domain and a myosin tail homology 4
(MyTH4) domain. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 187
Score = 40.8 bits (96), Expect = 9e-05
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEP 60
G +EGI+R G V++L + R D W LS D LK + R+L EP
Sbjct: 37 GFQTEGIFRVPGDIDEVNEL--KLRVDQWDYPLS----GLEDPHVPASLLKLWLRELEEP 90
Query: 61 LLSTELHVHLCNAAGMEC--ATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLY-FIQEKK- 116
L+ L+ +C A+ED +++KL I+ + + L+ L F Q +
Sbjct: 91 LIPDALY--------QQCISASEDPDKAVE-IVQKLPIINRLVLCYLINFLQVFAQPENV 141
Query: 117 DRNKMSVENLASIWGP 132
KM V NLA ++ P
Sbjct: 142 AHTKMDVSNLAMVFAP 157
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain present
in OCRL1-like proteins. OCRL1 (oculocerebrorenal
syndrome of Lowe 1)-like proteins contain two conserved
domains: a central inositol polyphosphate 5-phosphatase
domain and a C-terminal Rho GAP domain, this GAP domain
lacks the catalytic residue and therefore maybe
inactive. OCRL-like proteins are type II inositol
polyphosphate 5-phosphatases that can hydrolyze lipid
PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and
Ins(1,3,4,5)P4, but their individual specificities vary.
The functionality of the RhoGAP domain is still unclear.
Small GTPases cluster into distinct families, and all
act as molecular switches, active in their GTP-bound
form but inactive when GDP-bound. The Rho family of
GTPases activates effectors involved in a wide variety
of developmental processes, including regulation of
cytoskeleton formation, cell proliferation and the JNK
signaling pathway. GTPases generally have a low
intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by several orders of magnitude.
Length = 220
Score = 38.1 bits (89), Expect = 0.001
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 9/137 (6%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQ--DAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59
+ G EG++ G + +LLAE R D S V+ L F LP+
Sbjct: 63 TRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFNSPGSA--ESVAEALLLFLESLPD 120
Query: 60 PLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRN 119
P++ L+ L +E ++ + + L P+H L L + +
Sbjct: 121 PIIPYSLYERL-----LEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSESADR 175
Query: 120 KMSVENLASIWGPTLMH 136
+ LA+I+G L+
Sbjct: 176 GLDENTLATIFGRVLLR 192
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 29.3 bits (66), Expect = 1.0
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 39 EQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLE-KLHPI 97
+ F P+ LS E V LC + G EC +++ R LL+ K PI
Sbjct: 12 CSIKVGLREELETGFRGSPPQSKLSLEERVKLCLSIGEECIQPEEL---RELLKLKERPI 68
Query: 98 HY 99
Y
Sbjct: 69 CY 70
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 29.5 bits (65), Expect = 1.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 85 HIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLAS 128
HIYR L K + R LM H++ ++ +K + + E LA+
Sbjct: 118 HIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAA 161
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 28.2 bits (62), Expect = 3.0
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 104 KLMGHLYFIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGI 163
K M Q +K+R ENL +I P + W I+ ++KG I +
Sbjct: 697 KFME-----QYQKEREAHISENLINILQPCIAGDRKWDVPIIDKIEELKGSPFDIAIIDS 751
Query: 164 ITIILSESVLESH 176
I I + V +SH
Sbjct: 752 IGWIF-KHVAKSH 763
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 28.0 bits (62), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 52 RFFRDLPEPLLSTELHVHLCNAAGMEC 78
R F LP P+ + HV L +A M C
Sbjct: 169 RHFEPLPPPMYAVPGHVVLARSASMLC 195
>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase
NTA1, and related proteins (class 3 nitrilases).
Saccharomyces cerevisiae NTA1 functions in the N-end
rule protein degradation pathway. It specifically
deaminates the N-terminal asparagine and glutamine
residues of substrates of this pathway, to aspartate and
glutamate respectively, these latter are the
destabilizing residues. This subgroup belongs to a
larger nitrilase superfamily comprised of nitrile- or
amide-hydrolyzing enzymes and amide-condensing enzymes,
which depend on a Glu-Lys-Cys catalytic triad. This
superfamily has been classified in the literature based
on global and structure based sequence analysis into
thirteen different enzyme classes (referred to as 1-13),
this subgroup corresponds to class 3.
Length = 295
Score = 27.3 bits (61), Expect = 4.2
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 31 AWQVQLSREQYTE-------HDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGME 77
AW LS + T VS L+RF EPL V CN G E
Sbjct: 201 AWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPL--EGTQVVFCNRIGTE 252
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 27.4 bits (61), Expect = 4.4
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 22/96 (22%)
Query: 86 IYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK----------------MSVENLASI 129
IY L+K + G YF+ ++ +N+ +SV + +
Sbjct: 68 IYE--LKKEAIVIEEDYVFFFGIPYFVPVRRMQNEKTVIAVNLGGAVIPLAVSVFLMTKL 125
Query: 130 WGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIIT 165
++ + N +V+Y + IP VGI+
Sbjct: 126 QSYIVLAIINILVTAIVSYAFAR----VIPGVGIVV 157
>gnl|CDD|130763 TIGR01702, CO_DH_cata, carbon-monoxide dehydrogenase, catalytic
subunit. This model represents the carbon-monoxide
dehydrogenase catalytic subunit. This protein is related
to prismane (also called hybrid cluster protein), a
complex whose activity is not yet fully described; the
two share similar sets of ligands to unusual
metal-containing clusters.
Length = 621
Score = 27.4 bits (61), Expect = 5.1
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 67 HVHLCNAAGMECATEDKVHIYRSLL-----EKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
+ AAG + H R+L + + I K + I + D N++
Sbjct: 73 NFLRMIAAGTAAYSHHAEHAARALKATAEGKTPYSIKDEAKLKWLAKKLGIDTEGDSNEL 132
Query: 122 SVE 124
+VE
Sbjct: 133 AVE 135
>gnl|CDD|179073 PRK00588, rnpA, ribonuclease P; Reviewed.
Length = 118
Score = 25.9 bits (57), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 85 HIYRSLLEKLHPIHYVTVRKL 105
H+ R +L++LHP V +R L
Sbjct: 68 HVARPILKELHPSDRVVIRAL 88
>gnl|CDD|201519 pfam00943, Alpha_E2_glycop, Alphavirus E2 glycoprotein. E2 forms a
heterodimer with E1. The virus spikes are made up of 80
trimers of these heterodimers (sindbis virus).
Length = 403
Score = 26.5 bits (59), Expect = 10.0
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 85 HIYRSLLEKLHPIH--YVTVRKLMGHLYF----IQEKKDRN-KMSVENLASIWG 131
H +R + LHP H +T R L I RN ++ E L +WG
Sbjct: 264 HGFREVTLHLHPDHPTLLTTRSLGAEPNPTHEWITGPTTRNFTVTEEGLEYVWG 317
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.388
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,986,150
Number of extensions: 796502
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 56
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)