RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9944
(183 letters)
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 134 bits (340), Expect = 3e-40
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+EG+YR SG+ T+ + +F QD + L + T + V+ LK FF DLP+PL+ L
Sbjct: 45 TEGLYRVSGNKTDQDNIQKQFDQDH-NINLVSMEVTVNAVAGALKAFFADLPDPLIPYSL 103
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
H L AA + TE ++H + +++K HP++Y R ++ HL + ++ N M+ +NL
Sbjct: 104 HPELLEAAKIPDKTE-RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNL 162
Query: 127 ASIWGPTLM 135
+ + PTLM
Sbjct: 163 SICFWPTLM 171
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 133 bits (338), Expect = 5e-40
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTE 65
SEG+YR SG + + + F +D + +S Y + + ++ LK +FRDLP PL++ +
Sbjct: 42 SEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYD 101
Query: 66 LHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVEN 125
+ +A + E ++ L+ L P H T+R LM HL + + N M+ EN
Sbjct: 102 AYPKFIESAKIMDPDE-QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAEN 160
Query: 126 LASIWGPTLM 135
L ++GPTLM
Sbjct: 161 LGIVFGPTLM 170
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 133 bits (338), Expect = 6e-40
Identities = 26/132 (19%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+YR S+ N+++L D V L H ++ KR+ DLP P++ +
Sbjct: 43 CSTLYRTQSSS-NLAELRQLLDCDTPSVDLE--MIDVHVLADAFKRYLLDLPNPVIPAAV 99
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVE 124
+ + + A ++E+ + + + L+ + +++T++ L+ H + + + +N ++
Sbjct: 100 YSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNAR 159
Query: 125 NLASIWGPTLMH 136
L+ I+ P L
Sbjct: 160 VLSEIFSPMLFR 171
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 134 bits (340), Expect = 7e-40
Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
+EGIYR SG+ + + L +F QD + L+ + +T + V+ +K FF +LP+PL+ +
Sbjct: 86 TEGIYRVSGNKSEMESLQRQFDQDH-NLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNM 144
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
+ L A + + K+H + +L+K ++ + ++ HL + N M+ ENL
Sbjct: 145 QIDLVEAHKINDREQ-KLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENL 203
Query: 127 ASIWGPTLM 135
+ + PTLM
Sbjct: 204 SICFWPTLM 212
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 133 bits (336), Expect = 2e-39
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTV---LKRFFRDLPEPLLS 63
+G+YR G + V KLL+ + E E ++ T+ LK + R LP PL+
Sbjct: 55 EQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMM 114
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
+ AA +E E +V SL+ +L + + LM HL + + +N M+V
Sbjct: 115 YQFQRSFIKAAKLENQ-ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTV 173
Query: 124 ENLASIWGPTLM 135
NL ++GPTL+
Sbjct: 174 ANLGVVFGPTLL 185
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 132 bits (333), Expect = 4e-39
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Query: 6 MSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE--HDVSTVLKRFFRDLPEPLLS 63
+ +GIYR SG +N+ +L EF + L++E Y + H V ++ K +FR+LP PLL+
Sbjct: 53 IVDGIYRLSGVASNIQRLRHEFDSEH-VPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLT 111
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
+L+ +A E ++ ++++L P HY T+ LM HL + + M
Sbjct: 112 YQLYEKFSDAVSAATDEE-RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHA 170
Query: 124 ENLASIWGPTLM 135
+NLA +W P L+
Sbjct: 171 KNLAIVWAPNLL 182
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 129 bits (326), Expect = 3e-38
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLLSTEL 66
+GIYR SG+ + KL Q+ ++ L Q+ + H V+ LK FFR+LPEPL
Sbjct: 54 DGIYRVSGNLATIQKLRFIVNQEE-KLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSF 112
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
A + ++ +SL++KL P + T++ L GHL I K +N MS ++L
Sbjct: 113 FEQFVEAIKKQDN-NTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSL 171
Query: 127 ASIWGPTLMHVEN 139
++GPTL+ EN
Sbjct: 172 GIVFGPTLLRAEN 184
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 128 bits (323), Expect = 7e-38
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
EGI+RRS +T V ++ ++ V + H + +LK F R+LPEPLL+ +L+
Sbjct: 45 EGIFRRSANTQVVREVQQKYNMGL-PVDFDQYNAL-HLPAVILKTFLRELPEPLLTFDLY 102
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
H+ ++ +V +L+ L +Y +R L L I D+NKM+ NLA
Sbjct: 103 PHVVGFLNID--ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 160
Query: 128 SIWGPTLMHVEN 139
++GP L+ ++
Sbjct: 161 VVFGPNLLWAKD 172
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 127 bits (322), Expect = 1e-37
Identities = 34/136 (25%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +++GI+R+S + + +L + +V L + + +++VLK F R++P + S
Sbjct: 41 GPLTKGIFRQSANVKSCRELKEKLNSGV-EVHL--DCESIFVIASVLKDFLRNIPGSIFS 97
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
++L+ H + E+K++ + LL++L + V +R L G L+ I++ N+M+
Sbjct: 98 SDLYDHWVSVMDQGND-EEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTA 156
Query: 124 ENLASIWGPTLMHVEN 139
NLA P+++
Sbjct: 157 FNLAVCVAPSILWPPA 172
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 133 bits (336), Expect = 2e-37
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEPLL 62
G SEG+YR SG + + + F +D + +S Y + + ++ LK +FRDLP PL+
Sbjct: 300 GLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLPIPLI 359
Query: 63 STELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMS 122
+ + + +A + E ++ L+ L P H T+R LM HL + + N M+
Sbjct: 360 TYDAYPKFIESAKIMDPDE-QLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMN 418
Query: 123 VENLASIWGPTLM 135
ENL ++GPTLM
Sbjct: 419 AENLGIVFGPTLM 431
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 126 bits (318), Expect = 5e-37
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
G+YR SG V +L +F + LS+ H + ++LK F R+L EPLL+ L+
Sbjct: 36 TGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDI-HAICSLLKDFLRNLKEPLLTFRLN 94
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
AA + ++ + + +L + T+ LM HL + + KM V NLA
Sbjct: 95 RAFMEAAEITDE-DNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQ-SPHTKMDVANLA 152
Query: 128 SIWGPTLM 135
++GPT++
Sbjct: 153 KVFGPTIV 160
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 126 bits (319), Expect = 5e-37
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
G++R+SG + + L V E + +DV+ +LK++FRDLPEPL++ +L
Sbjct: 55 VGLFRKSGVKSRIQALRQMNEGAIDCVNY--EGQSAYDVADMLKQYFRDLPEPLMTNKLS 112
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
+ ++ ++ + L + ++ L+ L + N+M+ NLA
Sbjct: 113 ETFLQIYQYVPKDQ-RLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLA 171
Query: 128 SIWGPTLMH 136
P+L H
Sbjct: 172 VCLAPSLFH 180
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 126 bits (319), Expect = 9e-37
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
EGI+RRS +T V ++ ++ V + H + +LK F R+LPEPLL+ +L+
Sbjct: 81 EGIFRRSANTQVVREVQQKYNMGL-PVDFDQYNEL-HLPAVILKTFLRELPEPLLTFDLY 138
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLA 127
H+ ++ +V +L+ L +Y +R L L I D+NKM+ NLA
Sbjct: 139 PHVVGFLNID--ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA 196
Query: 128 SIWGPTLMHVEN 139
++GP L+ ++
Sbjct: 197 VVFGPNLLWAKD 208
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 127 bits (320), Expect = 1e-36
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1 MSEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEP 60
+ + +EG++R+SGS + L + + D++ +LK+FFR+LPEP
Sbjct: 94 LEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCL----SSAPPCDIAGLLKQFFRELPEP 149
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
+L +LH L A + TE+K L L +R L + + NK
Sbjct: 150 ILPADLHEALLKAQQLG--TEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENK 207
Query: 121 MSVENLASIWGPTLMHV 137
M NLA I+ P L+
Sbjct: 208 MDSSNLAVIFAPNLLQT 224
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 109 bits (275), Expect = 1e-30
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 15/168 (8%)
Query: 7 SEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTEL 66
SE YR L++ Q W ++ +K F LP PL++ E
Sbjct: 58 SESHYRPELPAPRTDWSLSDVDQ--WDT---------AALADGIKSFLLALPAPLVTPEA 106
Query: 67 HVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENL 126
A E A + L +T+R L+ HL + + +V L
Sbjct: 107 SAEARRAL-REAAGPVGPAL---EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRAL 162
Query: 127 ASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSESVLE 174
+ +GP L+ + SP ++ +L E + E
Sbjct: 163 GATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLEE 210
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 105 bits (262), Expect = 2e-27
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
E +++ G + +++ D + + H V+ L F LPEP++
Sbjct: 214 ACHQEDLFQTPGMQEELQQIIDCL--DTSIPET--IPGSNHSVAEALLIFLEALPEPVIC 269
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSV 123
EL+ ++A I R ++ +L H R LM L + + + N ++
Sbjct: 270 YELYQRCLDSA-------YDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNA 322
Query: 124 ENLASIWGPTLMH 136
+A+++ L+
Sbjct: 323 NMIATLFTSLLLR 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.28
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 21/98 (21%)
Query: 8 EGIYRR---SGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLST 64
E + ++ N L++ + + Q + Y E R + D +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-----RDRLYND-NQVF--A 127
Query: 65 ELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTV 102
+ +V + R L +L P V +
Sbjct: 128 KYNV----------SRLQPYLKLRQALLELRPAKNVLI 155
Score = 27.5 bits (60), Expect = 3.1
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 3 EGSMSEGIY----RRSGSTTNV----SKLLAEFRQDAWQV--QLSREQYTEHDVSTVLKR 52
+ M I+ + S V KLL + + S + H + L+R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 53 FF--RDLPEPLL 62
+ LL
Sbjct: 237 LLKSKPYENCLL 248
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 28.8 bits (65), Expect = 1.1
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 36 LSREQYTEHDVSTVLKR----FFRDLPEPLLSTELHVHL 70
L +E+ D+S + K+ ++ +P+ ELH HL
Sbjct: 19 LKKEELKNIDLSQMSKKERYKIWKRIPK----CELHCHL 53
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 28.0 bits (61), Expect = 2.0
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 51 KRFF-----RDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKL 105
+R PL LHV A + +DK + P +TVR
Sbjct: 1024 RRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDT 1083
Query: 106 MGHLYFIQEKKDRNKMS 122
M L IQ +++
Sbjct: 1084 MSDLPEIQNGASNSEIP 1100
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport
protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A*
2v3n_A* 2v3p_A* 2bb5_A*
Length = 414
Score = 26.7 bits (58), Expect = 4.5
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 18/148 (12%)
Query: 20 VSKLLAEFRQDAW-------QVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCN 72
+ L A + + Q+ Q + D+ + + R L EP L T +
Sbjct: 256 KAALQASLQHKTFQNPLMISQLLPVLNQKSYVDLISPDCQAPRALLEPALETPPQAKVPK 315
Query: 73 AAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKMSVENLASIWGP 132
+ YR H V+V ++ ++ + AS+ GP
Sbjct: 316 FIDVLLKVSGISPSYR---------HSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGP 366
Query: 133 TLMHVENWTTVIVVTYYQV-KGPSSPIP 159
L V ++QV + P +P+
Sbjct: 367 FLTSV-LGRKAGEREFWQVLRDPDTPLQ 393
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase,
head-TO-head synth cholesterol biosynthesis,
oxidoreductase, transferase; 1.52A {Homo sapiens} PDB:
3vj9_A 3vja_A 3vjb_A 3vjc_A* 3asx_A* 3lee_A* 3q2z_A*
3q30_A* 1ezf_A*
Length = 343
Score = 26.8 bits (59), Expect = 5.1
Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 22 KLLAEFRQDAWQVQLSREQYTEHDVSTVLKRF------FRDLPEPLLSTELHVHLCNAAG 75
LL F +Q + E D VL+ F FR+L E + + G
Sbjct: 68 PLLHNFHSFLYQPDWRFMESKEKD-RQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIG 126
Query: 76 MECATEDKVHIYRSLLEKLHPIHYV--TVRKLMGHLYFIQEKKDRNKMSVENLA 127
M E S E HYV V + L+ E +D A
Sbjct: 127 MA---EFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERA 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 5.8
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 29/80 (36%)
Query: 44 HDVSTVLK-RFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTV 102
+++ L+ +F + LPEP TE A +D E P V
Sbjct: 27 FFIASQLQEQFNKILPEP---TE-----------GFAADD---------EPTTPAELVG- 62
Query: 103 RKLMGHLYFIQEKKDRNKMS 122
K +G ++ + +K+
Sbjct: 63 -KFLG---YVSSLVEPSKVG 78
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics, nysgxrc; HET: ADE; 2.49A
{Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 26.4 bits (59), Expect = 6.4
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 50 LKRFFRDLPEPLLSTELHVHL 70
L + LP+ ELH+HL
Sbjct: 3 LYEWLNALPK----AELHLHL 19
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 26.4 bits (57), Expect = 7.8
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 51 KRFF-----RDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKL 105
+R PL LHV A + +DK + P +TVR
Sbjct: 713 RRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDT 772
Query: 106 MGHLYFIQEKKDRNKMSVENLASIW 130
M L ++ ++S W
Sbjct: 773 MSDLPEVRNGASALEISYNGEPQSW 797
>2q82_A Core protein P7; NESG, OC1, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 1.83A {Pseudomonas phage PHI12}
Length = 129
Score = 25.5 bits (55), Expect = 8.2
Identities = 9/73 (12%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 111 FIQEKKDRNKMSVENLASIWGPTLMHVENWTTVIVVTYYQVKGPSSPIPAVGIITIILSE 170
FI + ++ ++N + + T+++V+++ + +P + ++
Sbjct: 3 FITDMSKNQRLELQNRLAQYE---------TSLMVMSH------NGDVPVITGFNVMRVT 47
Query: 171 SVLESHKFETSRI 183
++L++ K E +
Sbjct: 48 TMLDALKVELPAV 60
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 26.0 bits (58), Expect = 8.7
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 47 STVLKRFFRDLPEPLLSTELHVHL 70
+ K P ELH+H+
Sbjct: 3 TFGEKTTSTAPPV----AELHLHI 22
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 25.8 bits (57), Expect = 8.9
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 9 GIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPE 59
GI + VS+++++ +Q+ + + ++ LKR+ L E
Sbjct: 180 GIAHS----SAVSRIISKLKQEKV-IVYKNSCFYVQNLD-YLKRYAPKLDE 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.388
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,684,054
Number of extensions: 146704
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 31
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)