RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9944
(183 letters)
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 102 bits (255), Expect = 2e-28
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE-HDVSTVLKRFFRDLPEP 60
+ G SEG+YR SG T ++ + F +D + +S Y + + ++ LK +FRDLP P
Sbjct: 31 ARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIITGALKLYFRDLPIP 90
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
+++ + + +AA + ++++ +L L P HY T+R LM HL + + N
Sbjct: 91 VITYDTYSKFIDAAKISN-ADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNF 149
Query: 121 MSVENLASIWGPTLMH 136
M+ ENL ++GPTLM
Sbjct: 150 MNAENLGIVFGPTLMR 165
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 97.9 bits (243), Expect = 1e-26
Identities = 28/135 (20%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLS 63
G +YR S+ N+++L D V L E H ++ KR+ DLP P++
Sbjct: 29 GLECSTLYRTQSSS-NLAELRQLLDCDTPSVDL--EMIDVHVLADAFKRYLLDLPNPVIP 85
Query: 64 TELHVHLCNAAGMECATEDKVHIYRSLLE--KLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
++ + + A ++E+ + + + L+ + +++T++ L+ H + + + +N +
Sbjct: 86 AAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLL 145
Query: 122 SVENLASIWGPTLMH 136
+ L+ I+ P L
Sbjct: 146 NARVLSEIFSPMLFR 160
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 191
Score = 96.0 bits (238), Expect = 7e-26
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 4 GSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTE---HDVSTVLKRFFRDLPEP 60
G +G+YR G + V KLL+ + E E +++ LK + R LP P
Sbjct: 22 GINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGP 81
Query: 61 LLSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNK 120
L+ + AA + E +V SL+ +L + + LM HL + + +N
Sbjct: 82 LMMYQFQRSFIKAAKL-ENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNL 140
Query: 121 MSVENLASIWGPTLMH 136
M+V NL ++GPTL+
Sbjct: 141 MTVANLGVVFGPTLLR 156
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 95.2 bits (236), Expect = 2e-25
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 2 SEGSMSEGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPL 61
+ +EGI+RRS +T V ++ ++ + + H + +LK F R+LPEPL
Sbjct: 37 AHALTTEGIFRRSANTQVVREVQQKY--NMGLPVDFDQYNALHLPAVILKTFLRELPEPL 94
Query: 62 LSTELHVHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKKDRNKM 121
L+ +L+ H+ ++ +V +L+ L +Y +R L L I D+NKM
Sbjct: 95 LTFDLYPHVVGFLNIDE--SQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKM 152
Query: 122 SVENLASIWGPTLMHVEN 139
+ NLA ++GP L+ ++
Sbjct: 153 TNTNLAVVFGPNLLWAKD 170
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium
yoelii [TaxId: 5861]}
Length = 357
Score = 26.4 bits (57), Expect = 2.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 48 TVLKRFFRDLPEPLLSTELHVHL 70
+R +P+ ELH HL
Sbjct: 21 KERYEIWRRIPK----VELHCHL 39
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 24.9 bits (53), Expect = 5.7
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 1/109 (0%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELH 67
EG+ R+G +T KL+ + +L R ++ +L + + + +
Sbjct: 9 EGV-DRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHL 67
Query: 68 VHLCNAAGMECATEDKVHIYRSLLEKLHPIHYVTVRKLMGHLYFIQEKK 116
+ N ++K+ +L+ + V + K+
Sbjct: 68 LFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ 116
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 25.0 bits (54), Expect = 6.3
Identities = 7/56 (12%), Positives = 19/56 (33%)
Query: 32 WQVQLSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIY 87
+ +L+R D++ ++ + +P +++V H Y
Sbjct: 68 YFPELNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIAHCY 123
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 24.8 bits (54), Expect = 6.3
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 130 WGPTLMHVENWTTVIVVTYYQVKGPSS-----------PIPAVGIITIIL 168
WGP ++ VE+W + + + S+ P AVGI I+L
Sbjct: 126 WGPLMLEVESWVLSGIASSVALGIFSATLGAYALSLGVPAIAVGIAGILL 175
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 24.9 bits (52), Expect = 7.8
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 54 FRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEKL---HPIHYVTVRKLMGHLY 110
+D+ E + E + A + ++ + + LE+L + ++G +
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 61
Query: 111 FIQEKKDR 118
+ + R
Sbjct: 62 HCKGELTR 69
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 24.1 bits (52), Expect = 8.0
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGH 108
E +H+ +K P +V ++ +G
Sbjct: 61 EIILHLPLLCEDKNVPYVFVRSKQALGR 88
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein
MecI {Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 23.8 bits (51), Expect = 8.8
Identities = 5/58 (8%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 36 LSREQYTEHDVSTVLKRFFRDLPEPLLSTELHVHLCNAAGMECATEDKVHIYRSLLEK 93
+ + + ++ L+ + + ++D++ R++L K
Sbjct: 70 VEESDIKYKTSKNFINKVYKGGFNSLVL-----NFVEKEDL---SQDEIEELRNILNK 119
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 23.7 bits (51), Expect = 8.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 81 EDKVHIYRSLLEKLHPIHYVTVRKLMGHL 109
E +H+ +K P +V + +G
Sbjct: 54 EILLHLPLVCEDKNTPYVFVRSKVALGRA 82
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 24.4 bits (53), Expect = 9.8
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 8 EGIYRRSGSTTNVSKLLAEFRQDAWQVQLSREQYTEHDVSTVLKRFFRDL---PEPLLST 64
+ + V+ +L R +H+++ ++ R + LL
Sbjct: 149 ADFHEKDTPVLWVTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLG 208
Query: 65 ELHVHLCNAAGMECATE 81
L L + AG T+
Sbjct: 209 GLRCSLADLAGCYMGTD 225
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.388
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,540
Number of extensions: 28083
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)