Query psy9948
Match_columns 203
No_of_seqs 107 out of 196
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:45:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05603 DUF775: Protein of un 100.0 1E-71 2.2E-76 469.8 21.7 184 1-200 1-202 (202)
2 KOG4067|consensus 100.0 1.9E-66 4.1E-71 426.4 16.7 192 1-203 1-193 (195)
3 PF04711 ApoA-II: Apolipoprote 67.9 2.1 4.6E-05 30.9 0.5 23 141-163 47-69 (76)
4 PF15187 Augurin: Oesophageal 47.8 9.6 0.00021 29.4 1.1 22 181-202 49-76 (114)
5 PF03475 3-alpha: 3-alpha doma 37.0 25 0.00055 22.5 1.7 14 182-195 31-44 (47)
6 PF10730 DUF2521: Protein of u 36.7 41 0.0009 27.4 3.2 62 119-191 75-137 (147)
7 PF09195 Endonuc-BglII: Restri 36.5 17 0.00037 29.8 1.0 43 149-195 97-149 (164)
8 PF07888 CALCOCO1: Calcium bin 32.2 84 0.0018 30.8 5.0 44 37-89 7-50 (546)
9 smart00674 CENPB Putative DNA- 31.7 1.2E+02 0.0026 20.0 4.5 35 141-195 28-62 (66)
10 PF08987 DUF1892: Protein of u 29.3 49 0.0011 25.9 2.4 17 178-194 50-66 (115)
11 KOG4439|consensus 24.2 60 0.0013 33.1 2.5 22 175-196 388-409 (901)
12 PRK06330 transcript cleavage f 23.2 58 0.0013 32.9 2.3 26 175-200 239-264 (718)
13 PF06145 Corona_NS1: Coronavir 22.9 55 0.0012 19.2 1.2 13 21-33 3-15 (29)
14 KOG1110|consensus 21.6 56 0.0012 27.6 1.5 20 175-194 129-148 (183)
15 PF01846 FF: FF domain; Inter 20.6 57 0.0012 20.7 1.1 15 186-200 21-35 (51)
No 1
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=1e-71 Score=469.82 Aligned_cols=184 Identities=43% Similarity=0.771 Sum_probs=158.4
Q ss_pred CeeEEecCCcccccceEecCceEEEecCCCCCccEEEEeecCCCCCCCCceeEEEEecCCCCCCCCceEeeeccCCCCce
Q psy9948 1 MFAILVSGRLVQTNYELVAENRFLFTIPEADTINHIAVFMTGTTPFPEGTGGMVYFNWPEPDSPSNWKLLGVIANEKPSS 80 (203)
Q Consensus 1 MFG~iv~Grpv~t~f~qv~~t~f~~~l~~~~~v~hivVFLl~~~pfP~g~~a~VY~~~p~~~~~~~w~~LG~isn~KPSA 80 (203)
|||||+|||||+|++++|++|||+++|+++++||||||||||++||||||||+|||+|| ++.++|||||+|+|+||||
T Consensus 1 MFGviv~Grpv~t~~~~v~~t~f~~~l~~~~~v~hivVFLl~~~p~P~g~aa~VY~~~P--~~~~~w~~LG~Isn~KPSA 78 (202)
T PF05603_consen 1 MFGVIVPGRPVQTDFQQVDETKFVFDLPNADSVNHIVVFLLPNVPFPPGYAAAVYFQWP--AGGPEWQLLGAISNEKPSA 78 (202)
T ss_pred CeEEEeCCCcccccceEcCCCEEEEECCCCCCCCEEEEEECCCCCCCcceeEEEEEEcC--CCCCCeEEeccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999 2237999999999999999
Q ss_pred EEEeCCCCCCCcccccCcccccccCCCCCCCCCceEEEEEecCcHHHHHHHhhhcccCCc------------------ch
Q psy9948 81 IFKISNLKSTENTLVNGCTSVALYNPFGQQPISRNAQIGISVEPIEVVNQHLASKSNESL------------------SN 142 (203)
Q Consensus 81 IFki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~IGISiEpl~~i~~~~~~~~~~~~------------------~~ 142 (203)
||||+|+...... .+. .+......+|+|||||||+++|+++++.+.++.. .+
T Consensus 79 IFki~~~~~~~~~-------~~~---~~~~~~~~~a~IGISiEp~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (202)
T PF05603_consen 79 IFKISWPEDDMLD-------SGS---PSSNNSSGTAQIGISIEPLAQIAQQLAALKAQQSSQSSSAMSSSSSSSAQSPDS 148 (202)
T ss_pred EEEcCCccccccc-------ccC---cccCCCCceEEEEEeeCcHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 9999994332100 000 0112456889999999999999999876444221 48
Q ss_pred HHHHHHHHHHhHhhhhhcccCCCCCCCCCCCceeeehhHHHHHHHHHHHHHhcCCccc
Q psy9948 143 FVQFCQKMVTSFVNYISSFSTTQASMVPNPNETYVPISSVQNWYQNFERKLALNPNFW 200 (203)
Q Consensus 143 ~~~~A~ki~~nlfNyl~SF~~~~~~~~~~~~~~~VP~~~~~~W~~kF~~kl~~dP~Fl 200 (203)
+++||+||++||||||+||+++..+ +++++||+++||+||+|||+||++||+||
T Consensus 149 ~~~~A~ki~~NlfNyl~SF~~~~~~----~~~~~VP~~~~~~W~~kFe~Kl~~dP~Fl 202 (202)
T PF05603_consen 149 TKEFAQKIAENLFNYLSSFSGSQPQ----GGEEVVPLSVFDKWWEKFERKLRNDPNFL 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCC----CCceEEeHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999986432 47899999999999999999999999998
No 2
>KOG4067|consensus
Probab=100.00 E-value=1.9e-66 Score=426.36 Aligned_cols=192 Identities=41% Similarity=0.766 Sum_probs=167.6
Q ss_pred CeeEEecCCcccccceEecCceEEEecCCCCCccEEEEeecCCCCCCCCceeEEEEecCCCCCCCCceEeeeccCCCCce
Q psy9948 1 MFAILVSGRLVQTNYELVAENRFLFTIPEADTINHIAVFMTGTTPFPEGTGGMVYFNWPEPDSPSNWKLLGVIANEKPSS 80 (203)
Q Consensus 1 MFG~iv~Grpv~t~f~qv~~t~f~~~l~~~~~v~hivVFLl~~~pfP~g~~a~VY~~~p~~~~~~~w~~LG~isn~KPSA 80 (203)
||||||+||++|++++||+++||+++++++++||||||||||++|||+|+||+|||+||+. ++|+|||+|+|+||||
T Consensus 1 mFG~IvsGR~~q~~~~qv~~~~~v~~l~~~esinhvvvFLl~n~pfP~g~~asVYf~~P~~---~~f~~lG~vtneKPSA 77 (195)
T KOG4067|consen 1 MFGVIVSGRLPQSEVVQVDDTQFVFDLPDYESINHVVVFLLGNSPFPVGMGASVYFQWPGQ---PEFQLLGFVTNEKPSA 77 (195)
T ss_pred CeeEEecCCCCccceeeecCcEEEEeeCChhHhcEEEEEEeCCcCCCCCceeEEEEeCCCC---CceEEEeeecCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999995 6999999999999999
Q ss_pred EEEeCCCCCCCcccccCcccccccCCCCCCCCCceEEEEEecCcHHHHHHHhhhcccCCcchHHHHHHHHHHhHhhhhhc
Q psy9948 81 IFKISNLKSTENTLVNGCTSVALYNPFGQQPISRNAQIGISVEPIEVVNQHLASKSNESLSNFVQFCQKMVTSFVNYISS 160 (203)
Q Consensus 81 IFki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~IGISiEpl~~i~~~~~~~~~~~~~~~~~~A~ki~~nlfNyl~S 160 (203)
||||.++++.+... -..++|.. +..+..++|||||||++..+++++. .-......+.+|+||.+|+||||+|
T Consensus 78 Ifkv~~~~~~dgs~--~~~~fg~~-----n~~s~ia~iGVSvEp~~~~a~~~~N-~vs~~~~~~~~aqki~~nf~Nf~qs 149 (195)
T KOG4067|consen 78 IFKVQQPKSGDGSG--HADPFGDT-----NISSNIAQIGVSVEPLETSAQSTPN-AVSLSRPNKSFAQKILTNFFNFMQS 149 (195)
T ss_pred eEEEecccccchhh--ccCccccc-----cccchhheeeeeeccchhhhhcCCC-ceeecCchHHHHHHHHHHHHHHHHH
Confidence 99999998763210 01122211 1112459999999999988888773 1233467899999999999999999
Q ss_pred ccCCCCCCCCC-CCceeeehhHHHHHHHHHHHHHhcCCcccccC
Q psy9948 161 FSTTQASMVPN-PNETYVPISSVQNWYQNFERKLALNPNFWQSL 203 (203)
Q Consensus 161 F~~~~~~~~~~-~~~~~VP~~~~~~W~~kF~~kl~~dP~Fl~~l 203 (203)
|++..+|++|+ +++++||++++|+||+||++|+++||+|||+.
T Consensus 150 fa~~~~q~~~n~~s~~~VP~~v~~~W~~kFq~rl~~npnFlk~~ 193 (195)
T KOG4067|consen 150 FAVSIAQIPPNLPSETFVPIRVFDDWYDKFQNRLANNPNFLKSV 193 (195)
T ss_pred HhhhhhccCCCCcccccccHHHHHHHHHHHHHHHhcCCchHhhh
Confidence 99999999999 89999999999999999999999999999963
No 3
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=67.85 E-value=2.1 Score=30.89 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHhHhhhhhcccC
Q psy9948 141 SNFVQFCQKMVTSFVNYISSFST 163 (203)
Q Consensus 141 ~~~~~~A~ki~~nlfNyl~SF~~ 163 (203)
..+.=+++|...+|+||++||..
T Consensus 47 eQltPlvkKagtdl~nflS~~v~ 69 (76)
T PF04711_consen 47 EQLTPLVKKAGTDLMNFLSSFVE 69 (76)
T ss_dssp HHHHHHHHGGHHTHHHHHHHHHH
T ss_pred HHHhHHHHHHhHHHHHHHHHhhc
Confidence 35667899999999999999974
No 4
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=47.84 E-value=9.6 Score=29.40 Aligned_cols=22 Identities=41% Similarity=0.967 Sum_probs=19.2
Q ss_pred HHHHHHHHH------HHHHhcCCccccc
Q psy9948 181 SVQNWYQNF------ERKLALNPNFWQS 202 (203)
Q Consensus 181 ~~~~W~~kF------~~kl~~dP~Fl~~ 202 (203)
-+++||+.| |.|++.|-++|-.
T Consensus 49 dVQQW~qQFlYmGFDEak~E~DlsYWm~ 76 (114)
T PF15187_consen 49 DVQQWYQQFLYMGFDEAKFEDDLSYWMN 76 (114)
T ss_pred HHHHHHHHHHHhcchHHHhhhhHHHHHh
Confidence 589999999 7899999998853
No 5
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=37.02 E-value=25 Score=22.49 Aligned_cols=14 Identities=29% Similarity=0.842 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhc
Q psy9948 182 VQNWYQNFERKLAL 195 (203)
Q Consensus 182 ~~~W~~kF~~kl~~ 195 (203)
=..|.++|++||++
T Consensus 31 a~~Wr~~~~kRL~~ 44 (47)
T PF03475_consen 31 AESWRKSFEKRLEK 44 (47)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc
Confidence 46899999999975
No 6
>PF10730 DUF2521: Protein of unknown function (DUF2521); InterPro: IPR019667 This entry represents a protein of unknown function specific to Bacillus.
Probab=36.68 E-value=41 Score=27.40 Aligned_cols=62 Identities=15% Similarity=0.335 Sum_probs=33.6
Q ss_pred EEecCcHHHHHHHhhhcccCCcchHHHHHHHHHHhHhhhhhcccCCCCCCCCCCCceeeehhHHHHHHHH-HHH
Q psy9948 119 GISVEPIEVVNQHLASKSNESLSNFVQFCQKMVTSFVNYISSFSTTQASMVPNPNETYVPISSVQNWYQN-FER 191 (203)
Q Consensus 119 GISiEpl~~i~~~~~~~~~~~~~~~~~~A~ki~~nlfNyl~SF~~~~~~~~~~~~~~~VP~~~~~~W~~k-F~~ 191 (203)
|--=||.+++...+.. |. +-++.-||||+.+...-........+--+---..++.||++ |++
T Consensus 75 GYYGE~~~~v~~Rc~~----------Ee-~~l~~~L~~~l~~W~~~~~~~~~~esly~ac~~fI~~WW~EGf~~ 137 (147)
T PF10730_consen 75 GYYGESAEDVKKRCEQ----------EE-KQLIDTLYNFLCYWGHIGEEDFDQESLYYACEQFIDSWWKEGFEK 137 (147)
T ss_pred cccCCCHHHHHHHHHH----------HH-HHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445788887666541 22 24678999999998741100000111111223467899975 544
No 7
>PF09195 Endonuc-BglII: Restriction endonuclease BglII; InterPro: IPR015278 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents BglII restriction endonucleases, which recognise AGATCT and cleaves after A-1 [, ]. BglII adopts a structure consisting of an alpha/beta core containing a six-stranded beta-sheet surrounded by five alpha-helices, two of which are involved in homodimerisation of the endonuclease.; PDB: 1DFM_B 1D2I_B 1ES8_A 2P0J_B 1VRR_A 1SDO_A.
Probab=36.53 E-value=17 Score=29.77 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHhHhhhhhcccCCCCCCCCCCCceeeehhHHHH----------HHHHHHHHHhc
Q psy9948 149 KMVTSFVNYISSFSTTQASMVPNPNETYVPISSVQN----------WYQNFERKLAL 195 (203)
Q Consensus 149 ki~~nlfNyl~SF~~~~~~~~~~~~~~~VP~~~~~~----------W~~kF~~kl~~ 195 (203)
.+..||++|...|..+.- +.+-.++|++.+++ ||+|...||++
T Consensus 97 ~~~~DL~~~~~~~~~~~I----dvGIiIt~~~~l~~~~~~~~s~~~~~ek~~~~l~~ 149 (164)
T PF09195_consen 97 FFYRDLLKFQLFYESGAI----DVGIIITPTKSLQKRSDKMGSGTTYYEKLVYRLRR 149 (164)
T ss_dssp HHHHHHHCHHHHHHTTS-----SEEEEEEE-CCCHT---TSSTTB--HHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhcCCc----eEEEEEecCHHHHhhcccCCcceeeHHHHHHHHHc
Confidence 355899999888876421 23668999999999 99999999954
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.20 E-value=84 Score=30.82 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=30.8
Q ss_pred EEeecCCCCCCCCceeEEEEecCCCCCCCCceEeeeccCCCCceEEEeCCCCC
Q psy9948 37 AVFMTGTTPFPEGTGGMVYFNWPEPDSPSNWKLLGVIANEKPSSIFKISNLKS 89 (203)
Q Consensus 37 vVFLl~~~pfP~g~~a~VY~~~p~~~~~~~w~~LG~isn~KPSAIFki~~~~~ 89 (203)
|||.==.--.+||....+||.+.+.-....|-.+| ||||+|...
T Consensus 7 ViF~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIG---------iFKVGw~s~ 50 (546)
T PF07888_consen 7 VIFNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIG---------IFKVGWSST 50 (546)
T ss_pred EEEeccccccCCCCCeEEEEecCCCCCCCCCCeeE---------EeecCCCch
Confidence 66763223457888888999987643345677787 999999744
No 9
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=31.75 E-value=1.2e+02 Score=20.05 Aligned_cols=35 Identities=9% Similarity=0.397 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHhHhhhhhcccCCCCCCCCCCCceeeehhHHHHHHHHHHHHHhc
Q psy9948 141 SNFVQFCQKMVTSFVNYISSFSTTQASMVPNPNETYVPISSVQNWYQNFERKLAL 195 (203)
Q Consensus 141 ~~~~~~A~ki~~nlfNyl~SF~~~~~~~~~~~~~~~VP~~~~~~W~~kF~~kl~~ 195 (203)
....+.|+.|++.+= +..|.. =..|..+|.+|...
T Consensus 28 ~~i~~~A~~i~~~~~--~~~f~~------------------s~~Wl~rF~~Rh~~ 62 (66)
T smart00674 28 EQIREKALEILQRLG--LENFKA------------------SNGWLTRFKKRHNI 62 (66)
T ss_pred HHHHHHHHHHHHHcC--CCCCCC------------------CHHHHHHHHHHcCC
Confidence 456667777766652 233432 25799999999753
No 10
>PF08987 DUF1892: Protein of unknown function (DUF1892); InterPro: IPR015080 Proteins in this entry, which are synthesised by Saccharomycetes, adopt a structure consisting of a four-stranded beta-sheet, with strand order beta2-beta1-beta4-beta3, and two alpha-helices, with an overall topology of beta-beta-alpha-beta-beta-alpha. They have no known function []. ; PDB: 1N6Z_A.
Probab=29.31 E-value=49 Score=25.87 Aligned_cols=17 Identities=12% Similarity=0.788 Sum_probs=14.2
Q ss_pred ehhHHHHHHHHHHHHHh
Q psy9948 178 PISSVQNWYQNFERKLA 194 (203)
Q Consensus 178 P~~~~~~W~~kF~~kl~ 194 (203)
-+..++.|++||-.++.
T Consensus 50 ~~d~lN~wFDkFDEeIc 66 (115)
T PF08987_consen 50 EFDELNEWFDKFDEEIC 66 (115)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcceee
Confidence 46789999999999885
No 11
>KOG4439|consensus
Probab=24.24 E-value=60 Score=33.14 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.6
Q ss_pred eeeehhHHHHHHHHHHHHHhcC
Q psy9948 175 TYVPISSVQNWYQNFERKLALN 196 (203)
Q Consensus 175 ~~VP~~~~~~W~~kF~~kl~~d 196 (203)
.++|++++..|+.-+++|++.|
T Consensus 388 II~PaSli~qW~~Ev~~rl~~n 409 (901)
T KOG4439|consen 388 IICPASLIHQWEAEVARRLEQN 409 (901)
T ss_pred EeCcHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999876
No 12
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=23.24 E-value=58 Score=32.93 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=24.2
Q ss_pred eeeehhHHHHHHHHHHHHHhcCCccc
Q psy9948 175 TYVPISSVQNWYQNFERKLALNPNFW 200 (203)
Q Consensus 175 ~~VP~~~~~~W~~kF~~kl~~dP~Fl 200 (203)
.++|-+-..+||++=..+|+.||.|-
T Consensus 239 ~vi~~~~W~kWW~~aKk~lKkd~~i~ 264 (718)
T PRK06330 239 LVIPEADWSRWWQSAKAKIKKDTRIE 264 (718)
T ss_pred hhCCHHHHHHHHHHHHHHHhhCCccc
Confidence 68999999999999999999999884
No 13
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=22.93 E-value=55 Score=19.17 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.6
Q ss_pred ceEEEecCCCCCc
Q psy9948 21 NRFLFTIPEADTI 33 (203)
Q Consensus 21 t~f~~~l~~~~~v 33 (203)
|+|+|++-.++++
T Consensus 3 tkfvfdll~pddi 15 (29)
T PF06145_consen 3 TKFVFDLLAPDDI 15 (29)
T ss_pred eEEEEeecCcccc
Confidence 7999999665443
No 14
>KOG1110|consensus
Probab=21.61 E-value=56 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=16.8
Q ss_pred eeeehhHHHHHHHHHHHHHh
Q psy9948 175 TYVPISSVQNWYQNFERKLA 194 (203)
Q Consensus 175 ~~VP~~~~~~W~~kF~~kl~ 194 (203)
.-.=++++++|-.+|+.|+.
T Consensus 129 ~a~e~eal~eWE~~fk~KY~ 148 (183)
T KOG1110|consen 129 TAEELEALNEWETKFKAKYP 148 (183)
T ss_pred CHHHHHHHHHHHHHHhhcCc
Confidence 34568899999999999974
No 15
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=20.56 E-value=57 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCccc
Q psy9948 186 YQNFERKLALNPNFW 200 (203)
Q Consensus 186 ~~kF~~kl~~dP~Fl 200 (203)
|+.+.+++..||.|+
T Consensus 21 W~~~~~~l~~dpry~ 35 (51)
T PF01846_consen 21 WEEVKPKLSKDPRYK 35 (51)
T ss_dssp HHHHHHHHTTSCHHH
T ss_pred HHHHHHHHccCHHHH
Confidence 569999999999885
Done!