Query psy9948
Match_columns 203
No_of_seqs 107 out of 196
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:45:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ou1_A Apolipoprotein A-II; hi 62.6 1.5 5.2E-05 30.5 -0.1 23 141-163 47-69 (77)
2 2f3y_B Voltage-dependent L-typ 34.0 23 0.00079 19.7 1.8 15 181-195 7-21 (26)
3 3flj_A Uncharacterized protein 32.2 22 0.00076 27.6 2.1 27 175-201 123-149 (155)
4 2l1p_A DNA-binding protein SAT 27.1 23 0.00077 25.2 1.2 16 176-191 63-78 (83)
5 1j03_A Putative steroid bindin 24.5 23 0.0008 25.6 0.9 16 179-194 80-95 (102)
6 1loi_A Cyclic 3',5'-AMP specif 24.1 12 0.00042 20.4 -0.5 10 182-191 16-25 (26)
7 1n6z_A Hypothetical 12.3 kDa p 22.9 49 0.0017 24.2 2.4 18 178-195 49-66 (105)
8 2ejx_A ST0812; arcaea, unknown 20.7 39 0.0013 26.2 1.5 20 176-195 109-128 (139)
9 3ghf_A Septum site-determining 20.6 34 0.0012 25.3 1.2 28 175-202 20-47 (120)
10 2lon_A HIG1 domain family memb 25.8 21 0.00073 26.0 0.0 22 178-199 8-31 (99)
11 2lom_A HIG1 domain family memb 23.2 26 0.00088 25.3 0.0 17 183-199 14-30 (93)
No 1
>2ou1_A Apolipoprotein A-II; high density lipoproteins, helix, cholesterol metabolism X-RAY diffraction, lipid binding protein; 2.00A {Homo sapiens} PDB: 1l6l_A
Probab=62.56 E-value=1.5 Score=30.52 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHhHhhhhhcccC
Q psy9948 141 SNFVQFCQKMVTSFVNYISSFST 163 (203)
Q Consensus 141 ~~~~~~A~ki~~nlfNyl~SF~~ 163 (203)
+...-|++|.+.|++||++||..
T Consensus 47 eqltPlvkkagTdl~nFlS~~~~ 69 (77)
T 2ou1_A 47 EQLTPLIKKAGTELVNFLSYFVE 69 (77)
T ss_dssp TTTSHHHHTHHHHTTC-CHHHHH
T ss_pred HHHhHHHHHhhhHHHHHHHHHcC
Confidence 34556899999999999999975
No 2
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=33.99 E-value=23 Score=19.74 Aligned_cols=15 Identities=13% Similarity=0.578 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhc
Q psy9948 181 SVQNWYQNFERKLAL 195 (203)
Q Consensus 181 ~~~~W~~kF~~kl~~ 195 (203)
.+++||++|.+|-+.
T Consensus 7 LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 7 LIQEYFRKFKKRKEQ 21 (26)
T ss_pred hHHHHHHHHHHhHHh
Confidence 579999999988754
No 3
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=32.22 E-value=22 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=24.8
Q ss_pred eeeehhHHHHHHHHHHHHHhcCCcccc
Q psy9948 175 TYVPISSVQNWYQNFERKLALNPNFWQ 201 (203)
Q Consensus 175 ~~VP~~~~~~W~~kF~~kl~~dP~Fl~ 201 (203)
++=|++.++.=.++.-.||.+||.|++
T Consensus 123 m~rP~k~l~al~~~m~~~l~~~~~~~~ 149 (155)
T 3flj_A 123 VMRPYKTVGALRDAMNARVMTDARFLK 149 (155)
T ss_dssp EEECHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred EEChHHHHHHHHHHHHHHHcCCchhhh
Confidence 556999999999999999999999986
No 4
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=27.15 E-value=23 Score=25.20 Aligned_cols=16 Identities=19% Similarity=0.659 Sum_probs=12.4
Q ss_pred eeehhHHHHHHHHHHH
Q psy9948 176 YVPISSVQNWYQNFER 191 (203)
Q Consensus 176 ~VP~~~~~~W~~kF~~ 191 (203)
+==.++|++||.+|.+
T Consensus 63 ~kIAk~fg~w~~~~~~ 78 (83)
T 2l1p_A 63 AAKCQEFGRWYKHFKK 78 (83)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4446789999999874
No 5
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=24.46 E-value=23 Score=25.61 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHh
Q psy9948 179 ISSVQNWYQNFERKLA 194 (203)
Q Consensus 179 ~~~~~~W~~kF~~kl~ 194 (203)
++.+++|.+.|++|+.
T Consensus 80 ~~~l~~W~~~f~~kY~ 95 (102)
T 1j03_A 80 INTLNDWETKFEAKYP 95 (102)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhccCC
Confidence 5899999999998863
No 6
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.09 E-value=12 Score=20.43 Aligned_cols=10 Identities=30% Similarity=1.116 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q psy9948 182 VQNWYQNFER 191 (203)
Q Consensus 182 ~~~W~~kF~~ 191 (203)
+--||+.|+|
T Consensus 16 lvgwwdqfkr 25 (26)
T 1loi_A 16 LVGWWDQFKR 25 (26)
T ss_dssp GGGGHHHHTC
T ss_pred hhhhHHHhcc
Confidence 4569999875
No 7
>1n6z_A Hypothetical 12.3 kDa protein in ZDS2-URA5 intergenic region; structural proteomics, structural genomics, OCSP, NESG; NMR {Saccharomyces cerevisiae} SCOP: d.263.1.1
Probab=22.85 E-value=49 Score=24.21 Aligned_cols=18 Identities=11% Similarity=0.804 Sum_probs=15.0
Q ss_pred ehhHHHHHHHHHHHHHhc
Q psy9948 178 PISSVQNWYQNFERKLAL 195 (203)
Q Consensus 178 P~~~~~~W~~kF~~kl~~ 195 (203)
-+..++.|++||-.++.-
T Consensus 49 ~~d~lN~~FDkFDE~I~i 66 (105)
T 1n6z_A 49 ELDELNTWFDKFDAEICI 66 (105)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhccceec
Confidence 467899999999999853
No 8
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=20.74 E-value=39 Score=26.17 Aligned_cols=20 Identities=5% Similarity=0.114 Sum_probs=15.7
Q ss_pred eeehhHHHHHHHHHHHHHhc
Q psy9948 176 YVPISSVQNWYQNFERKLAL 195 (203)
Q Consensus 176 ~VP~~~~~~W~~kF~~kl~~ 195 (203)
+.++.++++|.++|.+++.-
T Consensus 109 ~~~~~~i~k~i~~f~k~ldE 128 (139)
T 2ejx_A 109 FLGKPYVSSNLDRLAENIDE 128 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhhhH
Confidence 44566799999999998853
No 9
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.60 E-value=34 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.1
Q ss_pred eeeehhHHHHHHHHHHHHHhcCCccccc
Q psy9948 175 TYVPISSVQNWYQNFERKLALNPNFWQS 202 (203)
Q Consensus 175 ~~VP~~~~~~W~~kF~~kl~~dP~Fl~~ 202 (203)
..++-.-++.|.+...+|+++.|+|.+.
T Consensus 20 l~l~~~d~~~l~~~L~~ki~~aP~FF~~ 47 (120)
T 3ghf_A 20 VHLHEAEPEVIRQALEDKIAQAPAFLKH 47 (120)
T ss_dssp EEEESCCHHHHHHHHHHHHHHSHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHHHHhChHhhCC
Confidence 4456777999999999999999999864
No 10
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=25.76 E-value=21 Score=26.02 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.1
Q ss_pred ehhHH--HHHHHHHHHHHhcCCcc
Q psy9948 178 PISSV--QNWYQNFERKLALNPNF 199 (203)
Q Consensus 178 P~~~~--~~W~~kF~~kl~~dP~F 199 (203)
++..+ +.+.+||.||++.||-.
T Consensus 8 ~~~~~~ees~~~K~~rk~ke~Plv 31 (99)
T 2lon_A 8 WVPPDDEDCVSEKLLRKTRESPLV 31 (99)
Confidence 33445 48999999999999853
No 11
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=23.23 E-value=26 Score=25.28 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCcc
Q psy9948 183 QNWYQNFERKLALNPNF 199 (203)
Q Consensus 183 ~~W~~kF~~kl~~dP~F 199 (203)
+.+++||.||++.||-.
T Consensus 14 e~~~~K~~rk~ke~Plv 30 (93)
T 2lom_A 14 EDQGSKLIRKAKEAPFV 30 (93)
Confidence 78999999999999853
Done!